Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0604420 | XP_039684413.1 | 74.101 | 278 | 19 | 3 | 1 | 225 | 1 | 278 | 1.98e-136 | 394 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0604420 | sp|Q6NLW5|XRI1_ARATH | 45.679 | 81 | 38 | 2 | 145 | 225 | 226 | 300 | 2.79e-14 | 73.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0604420 | A0A396GQ56 | 74.101 | 278 | 19 | 3 | 1 | 225 | 1 | 278 | 9.44e-137 | 394 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0604420 | Msa0644410 | 0.815245 | 1.020286e-51 | -8.615850e-47 |
| Msa0604420 | Msa0655630 | 0.852828 | 3.573974e-61 | -8.615850e-47 |
| Msa0604420 | Msa0699490 | 0.829155 | 6.029176e-55 | -8.615850e-47 |
| Msa0604420 | Msa1096960 | 0.818337 | 2.066113e-52 | -8.615850e-47 |
| Msa0472950 | Msa0604420 | 0.820932 | 5.281169e-53 | -8.615850e-47 |
| Msa0519830 | Msa0604420 | 0.800365 | 1.491203e-48 | -8.615850e-47 |
| Msa0548470 | Msa0604420 | 0.815670 | 8.208316e-52 | -8.615850e-47 |
| Msa0562290 | Msa0604420 | 0.840518 | 8.287544e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0604420 | MtrunA17_Chr8g0375391 | 74.101 | 278 | 19 | 3 | 1 | 225 | 1 | 278 | 1.82e-140 | 394 |
| Msa0604420 | MtrunA17_Chr3g0109931 | 36.788 | 193 | 92 | 7 | 50 | 225 | 21 | 200 | 3.04e-28 | 105 |
| Msa0604420 | MtrunA17_Chr7g0236031 | 40.566 | 106 | 53 | 2 | 122 | 225 | 209 | 306 | 7.41e-17 | 77.8 |
| Msa0604420 | MtrunA17_Chr8g0340041 | 38.384 | 99 | 52 | 2 | 129 | 225 | 209 | 300 | 1.75e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0604420 | AT2G01990.2 | 47.131 | 244 | 80 | 8 | 21 | 225 | 11 | 244 | 2.49e-58 | 184 |
| Msa0604420 | AT1G14630.1 | 47.257 | 237 | 87 | 7 | 13 | 225 | 4 | 226 | 2.49e-57 | 181 |
| Msa0604420 | AT2G01990.1 | 50.725 | 207 | 61 | 6 | 50 | 225 | 17 | 213 | 4.55e-56 | 178 |
| Msa0604420 | AT5G48720.1 | 45.679 | 81 | 38 | 2 | 145 | 225 | 192 | 266 | 2.40e-15 | 73.6 |
| Msa0604420 | AT5G48720.3 | 45.679 | 81 | 38 | 2 | 145 | 225 | 192 | 266 | 2.40e-15 | 73.6 |
| Msa0604420 | AT5G48720.2 | 45.679 | 81 | 38 | 2 | 145 | 225 | 226 | 300 | 2.84e-15 | 73.6 |
| Msa0604420 | AT5G48720.4 | 45.679 | 81 | 38 | 2 | 145 | 225 | 226 | 300 | 2.84e-15 | 73.6 |
Find 62 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACAAGGTCCAGGCCTTTC+AGG | 0.243748 | 4_2:-50021425 | Msa0604420:CDS |
| AAACGTAGACGCTTGCTTAC+TGG | 0.250603 | 4_2:-50022645 | Msa0604420:CDS |
| TCACCAACTGGATGCCTTAC+TGG | 0.271694 | 4_2:+50021473 | None:intergenic |
| CCACTGGTTGGTGCCATATA+GGG | 0.272649 | 4_2:+50022461 | None:intergenic |
| TCTGGAATTTCAACCCTATA+TGG | 0.295231 | 4_2:-50022474 | Msa0604420:CDS |
| TTGAATGAGTTTAGTATAGT+TGG | 0.332190 | 4_2:+50023080 | None:intergenic |
| CTATGGTTCTTCCCTAGGTT+GGG | 0.351214 | 4_2:-50022925 | Msa0604420:CDS |
| TCCACTGGTTGGTGCCATAT+AGG | 0.356387 | 4_2:+50022460 | None:intergenic |
| CTTGAGTGTGGATTCTAGTA+AGG | 0.359570 | 4_2:+50021387 | None:intergenic |
| GGATGCCTTACTGGCCTTGT+TGG | 0.361970 | 4_2:+50021482 | None:intergenic |
| GGTGATGAGAAAGAAGAAAA+AGG | 0.363465 | 4_2:-50021618 | Msa0604420:CDS |
| ACATGAAAACAAAGCAAATC+AGG | 0.370570 | 4_2:+50021234 | None:intergenic |
| CAAGAGTCTGATTTCTCAAC+TGG | 0.388114 | 4_2:-50022708 | Msa0604420:CDS |
| AGTAAGCAAGCGTCTACGTT+TGG | 0.390270 | 4_2:+50022647 | None:intergenic |
| GAAGATGCTTTGGTTGAGTT+TGG | 0.397664 | 4_2:-50022678 | Msa0604420:CDS |
| GTCTATTTATGTACAAGTTA+TGG | 0.405893 | 4_2:+50023030 | None:intergenic |
| TGGTTATCTAGAAGATGCTT+TGG | 0.413523 | 4_2:-50022688 | Msa0604420:CDS |
| GCTATGGTTCTTCCCTAGGT+TGG | 0.416564 | 4_2:-50022926 | Msa0604420:CDS |
| CCACCACTGCTTTGCCTGAA+AGG | 0.422228 | 4_2:+50021411 | None:intergenic |
| TTCGATCTTTACAATTTAGC+AGG | 0.422270 | 4_2:+50021211 | None:intergenic |
| ACATCACCTTCTTCTCCTCC+TGG | 0.426500 | 4_2:+50021542 | None:intergenic |
| GTACTGTGAATGTTAGCCTT+TGG | 0.428209 | 4_2:+50021334 | None:intergenic |
| TGCCTTACTGGCCTTGTTGG+AGG | 0.444848 | 4_2:+50021485 | None:intergenic |
| CTCAGCTATGGTTCTTCCCT+AGG | 0.445329 | 4_2:-50022930 | Msa0604420:CDS |
| CCTGGCTTCACTAATGCAAA+TGG | 0.448137 | 4_2:+50021560 | None:intergenic |
| TACCTTATCAAAATCATCAA+TGG | 0.460583 | 4_2:+50022596 | None:intergenic |
| TGCCTCCAACAAGGCCAGTA+AGG | 0.471163 | 4_2:-50021487 | Msa0604420:CDS |
| ACTGCTTTGCCTGAAAGGCC+TGG | 0.473365 | 4_2:+50021416 | None:intergenic |
| TGCGTATCTGCACAAGGTCC+AGG | 0.484327 | 4_2:-50021434 | Msa0604420:CDS |
| GATCAGATAGAAAGGATTTG+TGG | 0.485973 | 4_2:-50022421 | Msa0604420:CDS |
| GTGAAGCCAGGAGGAGAAGA+AGG | 0.488620 | 4_2:-50021548 | Msa0604420:CDS |
| GGTTGGGATTATCACAGTCT+TGG | 0.489249 | 4_2:-50022909 | Msa0604420:CDS |
| TGAGGCTATTAGTATAAGCT+AGG | 0.491943 | 4_2:+50022949 | None:intergenic |
| CGACATGCAAAGTCACCAAC+TGG | 0.501594 | 4_2:+50021461 | None:intergenic |
| TGCCTCTTCTTCCTTGAGTG+TGG | 0.502866 | 4_2:+50021375 | None:intergenic |
| CCATTTGCATTAGTGAAGCC+AGG | 0.517544 | 4_2:-50021560 | Msa0604420:CDS |
| ACTGCATGGATCAGATAGAA+AGG | 0.538926 | 4_2:-50022429 | Msa0604420:CDS |
| CCTTTCAGGCAAAGCAGTGG+TGG | 0.557492 | 4_2:-50021411 | Msa0604420:CDS |
| TTGAGTGTGGATTCTAGTAA+GGG | 0.559111 | 4_2:+50021388 | None:intergenic |
| AGTGGAGAATTTCTACTGCA+TGG | 0.572678 | 4_2:-50022443 | Msa0604420:CDS |
| CCCTATATGGCACCAACCAG+TGG | 0.576336 | 4_2:-50022461 | Msa0604420:CDS |
| ATCACTATTATCAGAACCAA+AGG | 0.578340 | 4_2:-50021350 | Msa0604420:CDS |
| ATCCACACTCAAGGAAGAAG+AGG | 0.597837 | 4_2:-50021377 | Msa0604420:CDS |
| CATTGAATGACATAAATGAA+AGG | 0.598530 | 4_2:-50021517 | Msa0604420:CDS |
| GACTGTGATAATCCCAACCT+AGG | 0.598608 | 4_2:+50022913 | None:intergenic |
| ATGCAGTAGAAATTCTCCAC+TGG | 0.600169 | 4_2:+50022445 | None:intergenic |
| GGACCTTGTGCAGATACGCA+TGG | 0.608397 | 4_2:+50021437 | None:intergenic |
| CAGTTGGTGACTTTGCATGT+CGG | 0.613753 | 4_2:-50021460 | Msa0604420:CDS |
| TTTGGTTCTGATAATAGTGA+TGG | 0.613771 | 4_2:+50021352 | None:intergenic |
| CGGCCATGCGTATCTGCACA+AGG | 0.617785 | 4_2:-50021440 | Msa0604420:CDS |
| ACTGTGATAATCCCAACCTA+GGG | 0.623967 | 4_2:+50022914 | None:intergenic |
| TATACTAATAGCCTCAGCTA+TGG | 0.624938 | 4_2:-50022942 | Msa0604420:CDS |
| AGTAGAAATTCTCCACTGGT+TGG | 0.629919 | 4_2:+50022449 | None:intergenic |
| GGATCTTAATGCCTCCAACA+AGG | 0.630736 | 4_2:-50021496 | Msa0604420:CDS |
| GAGGCTATTAGTATAAGCTA+GGG | 0.637394 | 4_2:+50022950 | None:intergenic |
| TAGTACTACTACTAGTGATG+AGG | 0.645618 | 4_2:-50021639 | Msa0604420:CDS |
| CTTACTAGAATCCACACTCA+AGG | 0.649499 | 4_2:-50021386 | Msa0604420:CDS |
| AGGCCTTTCAGGCAAAGCAG+TGG | 0.658996 | 4_2:-50021414 | Msa0604420:CDS |
| AGGCCAGTAAGGCATCCAGT+TGG | 0.681142 | 4_2:-50021476 | Msa0604420:CDS |
| GAAACTATATTGTATACACA+TGG | 0.690384 | 4_2:+50021141 | None:intergenic |
| CTAGGGAAGAACCATAGCTG+AGG | 0.694216 | 4_2:+50022931 | None:intergenic |
| TTTGCATTAGTGAAGCCAGG+AGG | 0.731178 | 4_2:-50021557 | Msa0604420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTAATGTAGTAAAATA+CGG | - | chr4_2:50022390-50022409 | Msa0604420:intron | 10.0% |
| !! | TATATTAATGTAGTAAAATA+CGG | - | chr4_2:50022390-50022409 | Msa0604420:intron | 10.0% |
| !! | TGATATTGAATTATATGATA+TGG | - | chr4_2:50021425-50021444 | Msa0604420:CDS | 15.0% |
| !! | AATTTCAAACTTAAAATGAA+AGG | + | chr4_2:50021647-50021666 | None:intergenic | 15.0% |
| !! | AAATCAAAAGAAAAGAATAA+AGG | - | chr4_2:50021954-50021973 | Msa0604420:intron | 15.0% |
| !! | TTTATATACTCTATTACATA+TGG | - | chr4_2:50022326-50022345 | Msa0604420:intron | 15.0% |
| !! | TGATATTGAATTATATGATA+TGG | - | chr4_2:50021425-50021444 | Msa0604420:CDS | 15.0% |
| !! | AATTTCAAACTTAAAATGAA+AGG | + | chr4_2:50021647-50021666 | None:intergenic | 15.0% |
| !! | AAATCAAAAGAAAAGAATAA+AGG | - | chr4_2:50021954-50021973 | Msa0604420:intron | 15.0% |
| !! | TTTATATACTCTATTACATA+TGG | - | chr4_2:50022326-50022345 | Msa0604420:intron | 15.0% |
| !!! | AAGAAAATAGAAAAAGCATA+TGG | + | chr4_2:50021141-50021160 | None:intergenic | 20.0% |
| !! | ATTATATGATATGGTAGTTA+TGG | - | chr4_2:50021434-50021453 | Msa0604420:CDS | 20.0% |
| !! | TATGTAACTATATATAGTTC+TGG | - | chr4_2:50021699-50021718 | Msa0604420:intron | 20.0% |
| !! | AATTGATTGAGAATTGAAAA+AGG | - | chr4_2:50021922-50021941 | Msa0604420:intron | 20.0% |
| !!! | TCTTTTCTTTTGATTTCTTT+GGG | + | chr4_2:50021950-50021969 | None:intergenic | 20.0% |
| !!! | TTCTTTTCTTTTGATTTCTT+TGG | + | chr4_2:50021951-50021970 | None:intergenic | 20.0% |
| !!! | TATATAAAAGTATACCAAGT+GGG | + | chr4_2:50022314-50022333 | None:intergenic | 20.0% |
| !!! | AAGAAAATAGAAAAAGCATA+TGG | + | chr4_2:50021141-50021160 | None:intergenic | 20.0% |
| !! | ATTATATGATATGGTAGTTA+TGG | - | chr4_2:50021434-50021453 | Msa0604420:CDS | 20.0% |
| !! | TATGTAACTATATATAGTTC+TGG | - | chr4_2:50021699-50021718 | Msa0604420:intron | 20.0% |
| !! | AATTGATTGAGAATTGAAAA+AGG | - | chr4_2:50021922-50021941 | Msa0604420:intron | 20.0% |
| !!! | TCTTTTCTTTTGATTTCTTT+GGG | + | chr4_2:50021950-50021969 | None:intergenic | 20.0% |
| !!! | TTCTTTTCTTTTGATTTCTT+TGG | + | chr4_2:50021951-50021970 | None:intergenic | 20.0% |
| !!! | TATATAAAAGTATACCAAGT+GGG | + | chr4_2:50022314-50022333 | None:intergenic | 20.0% |
| ! | TTGAATGAGTTTAGTATAGT+TGG | + | chr4_2:50021114-50021133 | None:intergenic | 25.0% |
| ! | GTCTATTTATGTACAAGTTA+TGG | + | chr4_2:50021164-50021183 | None:intergenic | 25.0% |
| !!! | TTCCATTGATGATTTTGATA+AGG | - | chr4_2:50021593-50021612 | Msa0604420:CDS | 25.0% |
| ! | TACCTTATCAAAATCATCAA+TGG | + | chr4_2:50021598-50021617 | None:intergenic | 25.0% |
| !!! | TTTGAAATTCTTGTTGTTCT+TGG | - | chr4_2:50021658-50021677 | Msa0604420:intron | 25.0% |
| ! | TAATTCTTTGTATGAAGATG+AGG | + | chr4_2:50022256-50022275 | None:intergenic | 25.0% |
| !! | ATATAAAAGTATACCAAGTG+GGG | + | chr4_2:50022313-50022332 | None:intergenic | 25.0% |
| !! | GTATATAAAAGTATACCAAG+TGG | + | chr4_2:50022315-50022334 | None:intergenic | 25.0% |
| ! | CATTGAATGACATAAATGAA+AGG | - | chr4_2:50022674-50022693 | Msa0604420:CDS | 25.0% |
| !!! | TTTTGTTATCATGCATGTTA+TGG | - | chr4_2:50022892-50022911 | Msa0604420:CDS | 25.0% |
| ! | GAAACTATATTGTATACACA+TGG | + | chr4_2:50023053-50023072 | None:intergenic | 25.0% |
| ! | TTGAATGAGTTTAGTATAGT+TGG | + | chr4_2:50021114-50021133 | None:intergenic | 25.0% |
| ! | GTCTATTTATGTACAAGTTA+TGG | + | chr4_2:50021164-50021183 | None:intergenic | 25.0% |
| !!! | TTCCATTGATGATTTTGATA+AGG | - | chr4_2:50021593-50021612 | Msa0604420:CDS | 25.0% |
| ! | TACCTTATCAAAATCATCAA+TGG | + | chr4_2:50021598-50021617 | None:intergenic | 25.0% |
| !!! | TTTGAAATTCTTGTTGTTCT+TGG | - | chr4_2:50021658-50021677 | Msa0604420:intron | 25.0% |
| ! | TAATTCTTTGTATGAAGATG+AGG | + | chr4_2:50022256-50022275 | None:intergenic | 25.0% |
| !! | ATATAAAAGTATACCAAGTG+GGG | + | chr4_2:50022313-50022332 | None:intergenic | 25.0% |
| !! | GTATATAAAAGTATACCAAG+TGG | + | chr4_2:50022315-50022334 | None:intergenic | 25.0% |
| ! | CATTGAATGACATAAATGAA+AGG | - | chr4_2:50022674-50022693 | Msa0604420:CDS | 25.0% |
| !!! | TTTTGTTATCATGCATGTTA+TGG | - | chr4_2:50022892-50022911 | Msa0604420:CDS | 25.0% |
| ! | GAAACTATATTGTATACACA+TGG | + | chr4_2:50023053-50023072 | None:intergenic | 25.0% |
| ! | ATATGACGTGATGATCATTT+TGG | - | chr4_2:50021843-50021862 | Msa0604420:intron | 30.0% |
| !!! | GATGATCATTTTGGTTCAAA+AGG | - | chr4_2:50021852-50021871 | Msa0604420:intron | 30.0% |
| ATGAACATATAAGCACATTG+AGG | - | chr4_2:50022142-50022161 | Msa0604420:intron | 30.0% | |
| !!! | CTGGTTTTGGATATTGTTAA+TGG | + | chr4_2:50022282-50022301 | None:intergenic | 30.0% |
| !! | TTTGGTTCTGATAATAGTGA+TGG | + | chr4_2:50022842-50022861 | None:intergenic | 30.0% |
| ATCACTATTATCAGAACCAA+AGG | - | chr4_2:50022841-50022860 | Msa0604420:intron | 30.0% | |
| ACATGAAAACAAAGCAAATC+AGG | + | chr4_2:50022960-50022979 | None:intergenic | 30.0% | |
| TTCGATCTTTACAATTTAGC+AGG | + | chr4_2:50022983-50023002 | None:intergenic | 30.0% | |
| ! | ATATGACGTGATGATCATTT+TGG | - | chr4_2:50021843-50021862 | Msa0604420:intron | 30.0% |
| !!! | GATGATCATTTTGGTTCAAA+AGG | - | chr4_2:50021852-50021871 | Msa0604420:intron | 30.0% |
| ATGAACATATAAGCACATTG+AGG | - | chr4_2:50022142-50022161 | Msa0604420:intron | 30.0% | |
| !!! | CTGGTTTTGGATATTGTTAA+TGG | + | chr4_2:50022282-50022301 | None:intergenic | 30.0% |
| !! | TTTGGTTCTGATAATAGTGA+TGG | + | chr4_2:50022842-50022861 | None:intergenic | 30.0% |
| ATCACTATTATCAGAACCAA+AGG | - | chr4_2:50022841-50022860 | Msa0604420:intron | 30.0% | |
| ACATGAAAACAAAGCAAATC+AGG | + | chr4_2:50022960-50022979 | None:intergenic | 30.0% | |
| TTCGATCTTTACAATTTAGC+AGG | + | chr4_2:50022983-50023002 | None:intergenic | 30.0% | |
| TGACAAAAAATGATGAGGAG+GGG | + | chr4_2:50021186-50021205 | None:intergenic | 35.0% | |
| GTGACAAAAAATGATGAGGA+GGG | + | chr4_2:50021187-50021206 | None:intergenic | 35.0% | |
| TGTGACAAAAAATGATGAGG+AGG | + | chr4_2:50021188-50021207 | None:intergenic | 35.0% | |
| GTGTGTGACAAAAAATGATG+AGG | + | chr4_2:50021191-50021210 | None:intergenic | 35.0% | |
| GAGGCTATTAGTATAAGCTA+GGG | + | chr4_2:50021244-50021263 | None:intergenic | 35.0% | |
| TGAGGCTATTAGTATAAGCT+AGG | + | chr4_2:50021245-50021264 | None:intergenic | 35.0% | |
| TATACTAATAGCCTCAGCTA+TGG | - | chr4_2:50021249-50021268 | Msa0604420:three_prime_UTR | 35.0% | |
| TGGTTATCTAGAAGATGCTT+TGG | - | chr4_2:50021503-50021522 | Msa0604420:CDS | 35.0% | |
| ! | TCTGGAATTTCAACCCTATA+TGG | - | chr4_2:50021717-50021736 | Msa0604420:intron | 35.0% |
| GATCAGATAGAAAGGATTTG+TGG | - | chr4_2:50021770-50021789 | Msa0604420:intron | 35.0% | |
| ! | GAAAGGATTTGTGGATTTTC+AGG | - | chr4_2:50021779-50021798 | Msa0604420:intron | 35.0% |
| ! | GTGTCTTCTAGAAGAATGTT+TGG | + | chr4_2:50022186-50022205 | None:intergenic | 35.0% |
| TATGAAGATGAGGAGGAATT+TGG | + | chr4_2:50022246-50022265 | None:intergenic | 35.0% | |
| TTCTTTGTATGAAGATGAGG+AGG | + | chr4_2:50022253-50022272 | None:intergenic | 35.0% | |
| TAAAATACGGACCACAATTG+CGG | - | chr4_2:50022403-50022422 | Msa0604420:intron | 35.0% | |
| TAGTACTACTACTAGTGATG+AGG | - | chr4_2:50022552-50022571 | Msa0604420:intron | 35.0% | |
| GGTGATGAGAAAGAAGAAAA+AGG | - | chr4_2:50022573-50022592 | Msa0604420:intron | 35.0% | |
| GATGAGAAAGAAGAAAAAGG+TGG | - | chr4_2:50022576-50022595 | Msa0604420:intron | 35.0% | |
| GAAAGAAGAAAAAGGTGGTA+AGG | - | chr4_2:50022581-50022600 | Msa0604420:intron | 35.0% | |
| TTGAGTGTGGATTCTAGTAA+GGG | + | chr4_2:50022806-50022825 | None:intergenic | 35.0% | |
| TGACAAAAAATGATGAGGAG+GGG | + | chr4_2:50021186-50021205 | None:intergenic | 35.0% | |
| GTGACAAAAAATGATGAGGA+GGG | + | chr4_2:50021187-50021206 | None:intergenic | 35.0% | |
| TGTGACAAAAAATGATGAGG+AGG | + | chr4_2:50021188-50021207 | None:intergenic | 35.0% | |
| GTGTGTGACAAAAAATGATG+AGG | + | chr4_2:50021191-50021210 | None:intergenic | 35.0% | |
| GAGGCTATTAGTATAAGCTA+GGG | + | chr4_2:50021244-50021263 | None:intergenic | 35.0% | |
| TGAGGCTATTAGTATAAGCT+AGG | + | chr4_2:50021245-50021264 | None:intergenic | 35.0% | |
| TATACTAATAGCCTCAGCTA+TGG | - | chr4_2:50021249-50021268 | Msa0604420:three_prime_UTR | 35.0% | |
| TGGTTATCTAGAAGATGCTT+TGG | - | chr4_2:50021503-50021522 | Msa0604420:CDS | 35.0% | |
| ! | TCTGGAATTTCAACCCTATA+TGG | - | chr4_2:50021717-50021736 | Msa0604420:intron | 35.0% |
| GATCAGATAGAAAGGATTTG+TGG | - | chr4_2:50021770-50021789 | Msa0604420:intron | 35.0% | |
| ! | GAAAGGATTTGTGGATTTTC+AGG | - | chr4_2:50021779-50021798 | Msa0604420:intron | 35.0% |
| ! | GTGTCTTCTAGAAGAATGTT+TGG | + | chr4_2:50022186-50022205 | None:intergenic | 35.0% |
| TATGAAGATGAGGAGGAATT+TGG | + | chr4_2:50022246-50022265 | None:intergenic | 35.0% | |
| TTCTTTGTATGAAGATGAGG+AGG | + | chr4_2:50022253-50022272 | None:intergenic | 35.0% | |
| TAAAATACGGACCACAATTG+CGG | - | chr4_2:50022403-50022422 | Msa0604420:intron | 35.0% | |
| TAGTACTACTACTAGTGATG+AGG | - | chr4_2:50022552-50022571 | Msa0604420:intron | 35.0% | |
| GGTGATGAGAAAGAAGAAAA+AGG | - | chr4_2:50022573-50022592 | Msa0604420:intron | 35.0% | |
| GATGAGAAAGAAGAAAAAGG+TGG | - | chr4_2:50022576-50022595 | Msa0604420:intron | 35.0% | |
| GAAAGAAGAAAAAGGTGGTA+AGG | - | chr4_2:50022581-50022600 | Msa0604420:intron | 35.0% | |
| TTGAGTGTGGATTCTAGTAA+GGG | + | chr4_2:50022806-50022825 | None:intergenic | 35.0% | |
| ACTGTGATAATCCCAACCTA+GGG | + | chr4_2:50021280-50021299 | None:intergenic | 40.0% | |
| CAAGAGTCTGATTTCTCAAC+TGG | - | chr4_2:50021483-50021502 | Msa0604420:CDS | 40.0% | |
| GAAGATGCTTTGGTTGAGTT+TGG | - | chr4_2:50021513-50021532 | Msa0604420:CDS | 40.0% | |
| AGTAGAAATTCTCCACTGGT+TGG | + | chr4_2:50021745-50021764 | None:intergenic | 40.0% | |
| ATGCAGTAGAAATTCTCCAC+TGG | + | chr4_2:50021749-50021768 | None:intergenic | 40.0% | |
| AGTGGAGAATTTCTACTGCA+TGG | - | chr4_2:50021748-50021767 | Msa0604420:intron | 40.0% | |
| ACTGCATGGATCAGATAGAA+AGG | - | chr4_2:50021762-50021781 | Msa0604420:intron | 40.0% | |
| ! | ATGGTTTGCAACTGCAATTG+CGG | + | chr4_2:50022473-50022492 | None:intergenic | 40.0% |
| GACAACAACAACAACAAGAG+TGG | - | chr4_2:50022603-50022622 | Msa0604420:CDS | 40.0% | |
| CTTGAGTGTGGATTCTAGTA+AGG | + | chr4_2:50022807-50022826 | None:intergenic | 40.0% | |
| CTTACTAGAATCCACACTCA+AGG | - | chr4_2:50022805-50022824 | Msa0604420:intron | 40.0% | |
| !! | GTACTGTGAATGTTAGCCTT+TGG | + | chr4_2:50022860-50022879 | None:intergenic | 40.0% |
| GCAAATCAGGCTAAAAAAGC+TGG | + | chr4_2:50022947-50022966 | None:intergenic | 40.0% | |
| ACTGTGATAATCCCAACCTA+GGG | + | chr4_2:50021280-50021299 | None:intergenic | 40.0% | |
| CAAGAGTCTGATTTCTCAAC+TGG | - | chr4_2:50021483-50021502 | Msa0604420:CDS | 40.0% | |
| GAAGATGCTTTGGTTGAGTT+TGG | - | chr4_2:50021513-50021532 | Msa0604420:CDS | 40.0% | |
| AGTAGAAATTCTCCACTGGT+TGG | + | chr4_2:50021745-50021764 | None:intergenic | 40.0% | |
| ATGCAGTAGAAATTCTCCAC+TGG | + | chr4_2:50021749-50021768 | None:intergenic | 40.0% | |
| AGTGGAGAATTTCTACTGCA+TGG | - | chr4_2:50021748-50021767 | Msa0604420:intron | 40.0% | |
| ACTGCATGGATCAGATAGAA+AGG | - | chr4_2:50021762-50021781 | Msa0604420:intron | 40.0% | |
| ! | ATGGTTTGCAACTGCAATTG+CGG | + | chr4_2:50022473-50022492 | None:intergenic | 40.0% |
| GACAACAACAACAACAAGAG+TGG | - | chr4_2:50022603-50022622 | Msa0604420:CDS | 40.0% | |
| CTTGAGTGTGGATTCTAGTA+AGG | + | chr4_2:50022807-50022826 | None:intergenic | 40.0% | |
| CTTACTAGAATCCACACTCA+AGG | - | chr4_2:50022805-50022824 | Msa0604420:intron | 40.0% | |
| !! | GTACTGTGAATGTTAGCCTT+TGG | + | chr4_2:50022860-50022879 | None:intergenic | 40.0% |
| GCAAATCAGGCTAAAAAAGC+TGG | + | chr4_2:50022947-50022966 | None:intergenic | 40.0% | |
| CTATGGTTCTTCCCTAGGTT+GGG | - | chr4_2:50021266-50021285 | Msa0604420:three_prime_UTR | 45.0% | |
| GACTGTGATAATCCCAACCT+AGG | + | chr4_2:50021281-50021300 | None:intergenic | 45.0% | |
| GGTTGGGATTATCACAGTCT+TGG | - | chr4_2:50021282-50021301 | Msa0604420:three_prime_UTR | 45.0% | |
| AGTAAGCAAGCGTCTACGTT+TGG | + | chr4_2:50021547-50021566 | None:intergenic | 45.0% | |
| AAACGTAGACGCTTGCTTAC+TGG | - | chr4_2:50021546-50021565 | Msa0604420:CDS | 45.0% | |
| CCTGGCTTCACTAATGCAAA+TGG | + | chr4_2:50022634-50022653 | None:intergenic | 45.0% | |
| CCATTTGCATTAGTGAAGCC+AGG | - | chr4_2:50022631-50022650 | Msa0604420:CDS | 45.0% | |
| TTTGCATTAGTGAAGCCAGG+AGG | - | chr4_2:50022634-50022653 | Msa0604420:CDS | 45.0% | |
| GGATCTTAATGCCTCCAACA+AGG | - | chr4_2:50022695-50022714 | Msa0604420:CDS | 45.0% | |
| !! | CAGTTGGTGACTTTGCATGT+CGG | - | chr4_2:50022731-50022750 | Msa0604420:CDS | 45.0% |
| ATCCACACTCAAGGAAGAAG+AGG | - | chr4_2:50022814-50022833 | Msa0604420:intron | 45.0% | |
| CTATGGTTCTTCCCTAGGTT+GGG | - | chr4_2:50021266-50021285 | Msa0604420:three_prime_UTR | 45.0% | |
| GACTGTGATAATCCCAACCT+AGG | + | chr4_2:50021281-50021300 | None:intergenic | 45.0% | |
| GGTTGGGATTATCACAGTCT+TGG | - | chr4_2:50021282-50021301 | Msa0604420:three_prime_UTR | 45.0% | |
| AGTAAGCAAGCGTCTACGTT+TGG | + | chr4_2:50021547-50021566 | None:intergenic | 45.0% | |
| AAACGTAGACGCTTGCTTAC+TGG | - | chr4_2:50021546-50021565 | Msa0604420:CDS | 45.0% | |
| CCTGGCTTCACTAATGCAAA+TGG | + | chr4_2:50022634-50022653 | None:intergenic | 45.0% | |
| CCATTTGCATTAGTGAAGCC+AGG | - | chr4_2:50022631-50022650 | Msa0604420:CDS | 45.0% | |
| TTTGCATTAGTGAAGCCAGG+AGG | - | chr4_2:50022634-50022653 | Msa0604420:CDS | 45.0% | |
| GGATCTTAATGCCTCCAACA+AGG | - | chr4_2:50022695-50022714 | Msa0604420:CDS | 45.0% | |
| !! | CAGTTGGTGACTTTGCATGT+CGG | - | chr4_2:50022731-50022750 | Msa0604420:CDS | 45.0% |
| ATCCACACTCAAGGAAGAAG+AGG | - | chr4_2:50022814-50022833 | Msa0604420:intron | 45.0% | |
| !!! | TATTATTTTAATTTACTAAT+TGG | - | chr4_2:50022100-50022119 | Msa0604420:intron | 5.0% |
| !!! | ATATTTATAGTTTTAATTTA+TGG | + | chr4_2:50022492-50022511 | None:intergenic | 5.0% |
| !! | TATTATAAATTATTAAAAAC+AGG | - | chr4_2:50022526-50022545 | Msa0604420:intron | 5.0% |
| !!! | TATTATTTTAATTTACTAAT+TGG | - | chr4_2:50022100-50022119 | Msa0604420:intron | 5.0% |
| !!! | ATATTTATAGTTTTAATTTA+TGG | + | chr4_2:50022492-50022511 | None:intergenic | 5.0% |
| !! | TATTATAAATTATTAAAAAC+AGG | - | chr4_2:50022526-50022545 | Msa0604420:intron | 5.0% |
| CTAGGGAAGAACCATAGCTG+AGG | + | chr4_2:50021263-50021282 | None:intergenic | 50.0% | |
| CTCAGCTATGGTTCTTCCCT+AGG | - | chr4_2:50021261-50021280 | Msa0604420:three_prime_UTR | 50.0% | |
| GCTATGGTTCTTCCCTAGGT+TGG | - | chr4_2:50021265-50021284 | Msa0604420:three_prime_UTR | 50.0% | |
| !! | CCACTGGTTGGTGCCATATA+GGG | + | chr4_2:50021733-50021752 | None:intergenic | 50.0% |
| !! | TCCACTGGTTGGTGCCATAT+AGG | + | chr4_2:50021734-50021753 | None:intergenic | 50.0% |
| GCACATTGCAACCGCAATTG+TGG | + | chr4_2:50022417-50022436 | None:intergenic | 50.0% | |
| ACATCACCTTCTTCTCCTCC+TGG | + | chr4_2:50022652-50022671 | None:intergenic | 50.0% | |
| TCACCAACTGGATGCCTTAC+TGG | + | chr4_2:50022721-50022740 | None:intergenic | 50.0% | |
| CGACATGCAAAGTCACCAAC+TGG | + | chr4_2:50022733-50022752 | None:intergenic | 50.0% | |
| TGCCTCTTCTTCCTTGAGTG+TGG | + | chr4_2:50022819-50022838 | None:intergenic | 50.0% | |
| CTAGGGAAGAACCATAGCTG+AGG | + | chr4_2:50021263-50021282 | None:intergenic | 50.0% | |
| CTCAGCTATGGTTCTTCCCT+AGG | - | chr4_2:50021261-50021280 | Msa0604420:three_prime_UTR | 50.0% | |
| GCTATGGTTCTTCCCTAGGT+TGG | - | chr4_2:50021265-50021284 | Msa0604420:three_prime_UTR | 50.0% | |
| !! | CCACTGGTTGGTGCCATATA+GGG | + | chr4_2:50021733-50021752 | None:intergenic | 50.0% |
| !! | TCCACTGGTTGGTGCCATAT+AGG | + | chr4_2:50021734-50021753 | None:intergenic | 50.0% |
| GCACATTGCAACCGCAATTG+TGG | + | chr4_2:50022417-50022436 | None:intergenic | 50.0% | |
| ACATCACCTTCTTCTCCTCC+TGG | + | chr4_2:50022652-50022671 | None:intergenic | 50.0% | |
| TCACCAACTGGATGCCTTAC+TGG | + | chr4_2:50022721-50022740 | None:intergenic | 50.0% | |
| CGACATGCAAAGTCACCAAC+TGG | + | chr4_2:50022733-50022752 | None:intergenic | 50.0% | |
| TGCCTCTTCTTCCTTGAGTG+TGG | + | chr4_2:50022819-50022838 | None:intergenic | 50.0% | |
| CCCTATATGGCACCAACCAG+TGG | - | chr4_2:50021730-50021749 | Msa0604420:intron | 55.0% | |
| !!! | TGGGGTGTCTCTGCTGGTTT+TGG | + | chr4_2:50022295-50022314 | None:intergenic | 55.0% |
| GTGAAGCCAGGAGGAGAAGA+AGG | - | chr4_2:50022643-50022662 | Msa0604420:CDS | 55.0% | |
| TGCCTCCAACAAGGCCAGTA+AGG | - | chr4_2:50022704-50022723 | Msa0604420:CDS | 55.0% | |
| !! | TGCCTTACTGGCCTTGTTGG+AGG | + | chr4_2:50022709-50022728 | None:intergenic | 55.0% |
| !! | GGATGCCTTACTGGCCTTGT+TGG | + | chr4_2:50022712-50022731 | None:intergenic | 55.0% |
| ! | AGGCCAGTAAGGCATCCAGT+TGG | - | chr4_2:50022715-50022734 | Msa0604420:CDS | 55.0% |
| GGACCTTGTGCAGATACGCA+TGG | + | chr4_2:50022757-50022776 | None:intergenic | 55.0% | |
| TGCGTATCTGCACAAGGTCC+AGG | - | chr4_2:50022757-50022776 | Msa0604420:intron | 55.0% | |
| ACTGCTTTGCCTGAAAGGCC+TGG | + | chr4_2:50022778-50022797 | None:intergenic | 55.0% | |
| AGGCCTTTCAGGCAAAGCAG+TGG | - | chr4_2:50022777-50022796 | Msa0604420:intron | 55.0% | |
| CCACCACTGCTTTGCCTGAA+AGG | + | chr4_2:50022783-50022802 | None:intergenic | 55.0% | |
| CCTTTCAGGCAAAGCAGTGG+TGG | - | chr4_2:50022780-50022799 | Msa0604420:intron | 55.0% | |
| CCCTATATGGCACCAACCAG+TGG | - | chr4_2:50021730-50021749 | Msa0604420:intron | 55.0% | |
| !!! | TGGGGTGTCTCTGCTGGTTT+TGG | + | chr4_2:50022295-50022314 | None:intergenic | 55.0% |
| GTGAAGCCAGGAGGAGAAGA+AGG | - | chr4_2:50022643-50022662 | Msa0604420:CDS | 55.0% | |
| TGCCTCCAACAAGGCCAGTA+AGG | - | chr4_2:50022704-50022723 | Msa0604420:CDS | 55.0% | |
| !! | TGCCTTACTGGCCTTGTTGG+AGG | + | chr4_2:50022709-50022728 | None:intergenic | 55.0% |
| !! | GGATGCCTTACTGGCCTTGT+TGG | + | chr4_2:50022712-50022731 | None:intergenic | 55.0% |
| ! | AGGCCAGTAAGGCATCCAGT+TGG | - | chr4_2:50022715-50022734 | Msa0604420:CDS | 55.0% |
| GGACCTTGTGCAGATACGCA+TGG | + | chr4_2:50022757-50022776 | None:intergenic | 55.0% | |
| TGCGTATCTGCACAAGGTCC+AGG | - | chr4_2:50022757-50022776 | Msa0604420:intron | 55.0% | |
| ACTGCTTTGCCTGAAAGGCC+TGG | + | chr4_2:50022778-50022797 | None:intergenic | 55.0% | |
| AGGCCTTTCAGGCAAAGCAG+TGG | - | chr4_2:50022777-50022796 | Msa0604420:intron | 55.0% | |
| CCACCACTGCTTTGCCTGAA+AGG | + | chr4_2:50022783-50022802 | None:intergenic | 55.0% | |
| CCTTTCAGGCAAAGCAGTGG+TGG | - | chr4_2:50022780-50022799 | Msa0604420:intron | 55.0% | |
| ACCAGCAGAGACACCCCACT+TGG | - | chr4_2:50022297-50022316 | Msa0604420:intron | 60.0% | |
| ! | ACCAAGTGGGGTGTCTCTGC+TGG | + | chr4_2:50022301-50022320 | None:intergenic | 60.0% |
| CGGCCATGCGTATCTGCACA+AGG | - | chr4_2:50022751-50022770 | Msa0604420:intron | 60.0% | |
| GCACAAGGTCCAGGCCTTTC+AGG | - | chr4_2:50022766-50022785 | Msa0604420:intron | 60.0% | |
| ACCAGCAGAGACACCCCACT+TGG | - | chr4_2:50022297-50022316 | Msa0604420:intron | 60.0% | |
| ! | ACCAAGTGGGGTGTCTCTGC+TGG | + | chr4_2:50022301-50022320 | None:intergenic | 60.0% |
| CGGCCATGCGTATCTGCACA+AGG | - | chr4_2:50022751-50022770 | Msa0604420:intron | 60.0% | |
| GCACAAGGTCCAGGCCTTTC+AGG | - | chr4_2:50022766-50022785 | Msa0604420:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 50021108 | 50023105 | 50021108 | ID=Msa0604420;Name=Msa0604420 |
| chr4_2 | mRNA | 50021108 | 50023105 | 50021108 | ID=Msa0604420-mRNA-1;Parent=Msa0604420;Name=Msa0604420-mRNA-1;_AED=0.19;_eAED=0.19;_QI=117|0.66|1|1|1|1|4|238|225 |
| chr4_2 | exon | 50021108 | 50021665 | 50021108 | ID=Msa0604420-mRNA-1:exon:11682;Parent=Msa0604420-mRNA-1 |
| chr4_2 | exon | 50022413 | 50022497 | 50022413 | ID=Msa0604420-mRNA-1:exon:11681;Parent=Msa0604420-mRNA-1 |
| chr4_2 | exon | 50022599 | 50022762 | 50022599 | ID=Msa0604420-mRNA-1:exon:11680;Parent=Msa0604420-mRNA-1 |
| chr4_2 | exon | 50022880 | 50023105 | 50022880 | ID=Msa0604420-mRNA-1:exon:11679;Parent=Msa0604420-mRNA-1 |
| chr4_2 | five_prime_UTR | 50022989 | 50023105 | 50022989 | ID=Msa0604420-mRNA-1:five_prime_utr;Parent=Msa0604420-mRNA-1 |
| chr4_2 | CDS | 50022880 | 50022988 | 50022880 | ID=Msa0604420-mRNA-1:cds;Parent=Msa0604420-mRNA-1 |
| chr4_2 | CDS | 50022599 | 50022762 | 50022599 | ID=Msa0604420-mRNA-1:cds;Parent=Msa0604420-mRNA-1 |
| chr4_2 | CDS | 50022413 | 50022497 | 50022413 | ID=Msa0604420-mRNA-1:cds;Parent=Msa0604420-mRNA-1 |
| chr4_2 | CDS | 50021346 | 50021665 | 50021346 | ID=Msa0604420-mRNA-1:cds;Parent=Msa0604420-mRNA-1 |
| chr4_2 | three_prime_UTR | 50021108 | 50021345 | 50021108 | ID=Msa0604420-mRNA-1:three_prime_utr;Parent=Msa0604420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
