Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656020 | XP_013455822.1 | 98.347 | 363 | 3 | 1 | 1 | 360 | 142 | 504 | 0.0 | 745 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656020 | sp|Q9ASP6|HNRPQ_ARATH | 51.639 | 366 | 153 | 7 | 1 | 360 | 148 | 495 | 7.35e-126 | 373 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0039330 | Msa0656020 | -0.802758 | 4.819846e-49 | -8.615850e-47 |
| Msa0632730 | Msa0656020 | -0.813294 | 2.753649e-51 | -8.615850e-47 |
| Msa0656020 | Msa1105450 | -0.819262 | 1.274009e-52 | -8.615850e-47 |
| Msa0656020 | Msa1162550 | 0.829890 | 3.995609e-55 | -8.615850e-47 |
| Msa0656020 | Msa1205130 | -0.822020 | 2.960979e-53 | -8.615850e-47 |
| Msa0426640 | Msa0656020 | -0.804274 | 2.336872e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656020 | MtrunA17_Chr4g0026301 | 98.347 | 363 | 3 | 1 | 1 | 360 | 142 | 504 | 0.0 | 745 |
| Msa0656020 | MtrunA17_Chr7g0217261 | 84.762 | 315 | 48 | 0 | 1 | 315 | 381 | 695 | 0.0 | 555 |
| Msa0656020 | MtrunA17_Chr7g0266451 | 70.724 | 304 | 85 | 2 | 1 | 303 | 133 | 433 | 4.91e-140 | 406 |
| Msa0656020 | MtrunA17_Chr7g0276201 | 53.994 | 313 | 137 | 4 | 1 | 307 | 136 | 447 | 3.20e-111 | 332 |
| Msa0656020 | MtrunA17_Chr8g0372111 | 29.362 | 235 | 158 | 5 | 2 | 228 | 451 | 685 | 2.76e-27 | 113 |
| Msa0656020 | MtrunA17_Chr8g0335981 | 29.902 | 204 | 140 | 3 | 9 | 209 | 255 | 458 | 9.27e-24 | 102 |
| Msa0656020 | MtrunA17_Chr8g0335981 | 26.590 | 173 | 110 | 6 | 40 | 209 | 206 | 364 | 2.33e-11 | 65.1 |
| Msa0656020 | MtrunA17_Chr1g0201151 | 25.654 | 382 | 226 | 13 | 8 | 357 | 156 | 511 | 4.33e-15 | 76.6 |
| Msa0656020 | MtrunA17_Chr7g0250221 | 26.500 | 200 | 142 | 4 | 9 | 203 | 234 | 433 | 4.90e-15 | 76.6 |
| Msa0656020 | MtrunA17_Chr4g0044541 | 24.925 | 333 | 199 | 10 | 8 | 311 | 160 | 470 | 2.44e-14 | 74.3 |
| Msa0656020 | MtrunA17_Chr8g0375101 | 23.864 | 264 | 176 | 7 | 48 | 298 | 3 | 254 | 6.48e-14 | 72.4 |
| Msa0656020 | MtrunA17_Chr0c09g0493511 | 24.309 | 362 | 203 | 14 | 9 | 336 | 70 | 394 | 6.39e-13 | 69.7 |
| Msa0656020 | MtrunA17_Chr6g0466501 | 27.016 | 248 | 164 | 7 | 11 | 249 | 67 | 306 | 3.68e-12 | 67.4 |
| Msa0656020 | MtrunA17_Chr6g0466501 | 22.409 | 357 | 205 | 10 | 9 | 308 | 152 | 493 | 2.55e-11 | 65.1 |
| Msa0656020 | MtrunA17_Chr6g0465751 | 26.613 | 248 | 165 | 7 | 11 | 249 | 67 | 306 | 1.11e-11 | 66.2 |
| Msa0656020 | MtrunA17_Chr6g0465751 | 22.951 | 244 | 155 | 5 | 9 | 227 | 152 | 387 | 8.41e-11 | 63.5 |
| Msa0656020 | MtrunA17_Chr6g0465631 | 25.356 | 351 | 195 | 14 | 11 | 323 | 56 | 377 | 1.25e-11 | 65.9 |
| Msa0656020 | MtrunA17_Chr6g0465691 | 22.472 | 356 | 204 | 10 | 9 | 307 | 70 | 410 | 1.85e-11 | 65.5 |
| Msa0656020 | MtrunA17_Chr3g0134141 | 28.426 | 197 | 123 | 7 | 6 | 191 | 61 | 250 | 3.69e-11 | 64.3 |
| Msa0656020 | MtrunA17_Chr6g0466451 | 25.071 | 351 | 196 | 14 | 11 | 323 | 56 | 377 | 4.05e-11 | 64.3 |
| Msa0656020 | MtrunA17_Chr1g0153181 | 24.706 | 340 | 182 | 13 | 8 | 306 | 158 | 464 | 4.88e-11 | 64.3 |
| Msa0656020 | MtrunA17_Chr5g0402191 | 23.113 | 212 | 152 | 4 | 48 | 259 | 3 | 203 | 6.03e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656020 | AT3G52660.3 | 60.586 | 307 | 115 | 3 | 1 | 302 | 124 | 429 | 8.26e-136 | 395 |
| Msa0656020 | AT3G52660.1 | 60.586 | 307 | 115 | 3 | 1 | 302 | 124 | 429 | 8.26e-136 | 395 |
| Msa0656020 | AT3G52660.2 | 60.586 | 307 | 115 | 3 | 1 | 302 | 124 | 429 | 8.26e-136 | 395 |
| Msa0656020 | AT4G00830.2 | 51.639 | 366 | 153 | 7 | 1 | 360 | 148 | 495 | 7.47e-127 | 373 |
| Msa0656020 | AT4G00830.1 | 51.639 | 366 | 153 | 7 | 1 | 360 | 148 | 495 | 7.47e-127 | 373 |
| Msa0656020 | AT4G00830.6 | 51.639 | 366 | 153 | 7 | 1 | 360 | 148 | 495 | 7.47e-127 | 373 |
| Msa0656020 | AT4G00830.3 | 50.546 | 366 | 149 | 8 | 1 | 360 | 148 | 487 | 9.07e-121 | 357 |
| Msa0656020 | AT4G00830.5 | 50.546 | 366 | 149 | 8 | 1 | 360 | 148 | 487 | 9.07e-121 | 357 |
| Msa0656020 | AT4G00830.4 | 50.000 | 366 | 159 | 7 | 1 | 360 | 148 | 495 | 3.36e-120 | 356 |
| Msa0656020 | AT5G28390.1 | 48.454 | 194 | 44 | 3 | 112 | 302 | 1 | 141 | 1.70e-53 | 175 |
| Msa0656020 | AT2G44710.4 | 26.754 | 228 | 160 | 4 | 1 | 221 | 161 | 388 | 1.25e-21 | 97.1 |
| Msa0656020 | AT2G44710.2 | 26.754 | 228 | 160 | 4 | 1 | 221 | 246 | 473 | 2.39e-21 | 96.3 |
| Msa0656020 | AT2G44710.1 | 26.754 | 228 | 160 | 4 | 1 | 221 | 246 | 473 | 2.39e-21 | 96.3 |
| Msa0656020 | AT1G71770.1 | 28.070 | 228 | 146 | 5 | 11 | 226 | 100 | 321 | 2.04e-16 | 81.3 |
| Msa0656020 | AT1G71770.1 | 25.378 | 331 | 189 | 14 | 9 | 288 | 185 | 508 | 1.20e-12 | 69.7 |
| Msa0656020 | AT1G71770.2 | 28.070 | 228 | 146 | 5 | 11 | 226 | 100 | 321 | 2.04e-16 | 81.3 |
| Msa0656020 | AT1G71770.2 | 25.378 | 331 | 189 | 14 | 9 | 288 | 185 | 508 | 1.20e-12 | 69.7 |
| Msa0656020 | AT2G23350.1 | 26.225 | 347 | 208 | 12 | 8 | 320 | 172 | 504 | 7.67e-15 | 76.3 |
| Msa0656020 | AT2G23350.1 | 25.610 | 246 | 163 | 8 | 4 | 236 | 79 | 317 | 2.65e-14 | 74.7 |
| Msa0656020 | AT4G34110.1 | 26.106 | 226 | 151 | 7 | 11 | 226 | 78 | 297 | 2.06e-14 | 75.1 |
| Msa0656020 | AT4G34110.1 | 26.506 | 332 | 193 | 12 | 8 | 310 | 162 | 471 | 3.54e-14 | 74.3 |
| Msa0656020 | AT1G49760.1 | 25.526 | 333 | 196 | 11 | 8 | 311 | 171 | 480 | 3.15e-13 | 71.2 |
| Msa0656020 | AT1G49760.1 | 27.861 | 201 | 129 | 6 | 11 | 201 | 87 | 281 | 2.00e-11 | 65.9 |
| Msa0656020 | AT1G49760.2 | 25.526 | 333 | 196 | 11 | 8 | 311 | 171 | 480 | 3.15e-13 | 71.2 |
| Msa0656020 | AT1G49760.2 | 27.861 | 201 | 129 | 6 | 11 | 201 | 87 | 281 | 2.00e-11 | 65.9 |
| Msa0656020 | AT1G22760.1 | 26.800 | 250 | 143 | 9 | 9 | 227 | 175 | 415 | 3.29e-13 | 71.2 |
| Msa0656020 | AT4G36960.1 | 23.116 | 199 | 133 | 6 | 48 | 246 | 2 | 180 | 7.56e-11 | 63.5 |
| Msa0656020 | AT4G36960.2 | 23.116 | 199 | 133 | 6 | 48 | 246 | 2 | 180 | 7.56e-11 | 63.5 |
| Msa0656020 | AT2G36660.1 | 23.868 | 243 | 155 | 6 | 8 | 226 | 150 | 386 | 7.61e-11 | 63.9 |
Find 123 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCTTACATTCATGATTT+GGG | 0.198909 | 4_3:+65060106 | Msa0656020:three_prime_UTR |
| GCTGAATAATACCGAATTTA+AGG | 0.200173 | 4_3:+65056641 | Msa0656020:CDS |
| AAAAGATGCTTCTGAGAATA+AGG | 0.213550 | 4_3:+65056563 | Msa0656020:CDS |
| AGGAGTGGCGGCGGTGGTGG+TGG | 0.219239 | 4_3:+65059872 | Msa0656020:CDS |
| TGTGGGGTGTGCGGGGTGTG+TGG | 0.229589 | 4_3:-65059830 | None:intergenic |
| ACATTAAAGACCATCTAATA+TGG | 0.235438 | 4_3:-65059977 | None:intergenic |
| TCTTGCTTACATTCATGATT+TGG | 0.235513 | 4_3:+65060105 | Msa0656020:three_prime_UTR |
| GTGGGGTGTGCGGGGTGTGT+GGG | 0.245795 | 4_3:-65059829 | None:intergenic |
| TAGATGGTCTTTAATGTATT+GGG | 0.279633 | 4_3:+65059983 | Msa0656020:exon |
| GGCGATGATGCCGATGCTTC+TGG | 0.295005 | 4_3:+65059571 | Msa0656020:CDS |
| GGCAGGAGTGGCGGCGGTGG+TGG | 0.306131 | 4_3:+65059869 | Msa0656020:CDS |
| TGCGGGGTGTGTGGGGTGTG+TGG | 0.314209 | 4_3:-65059821 | None:intergenic |
| TGTAAGCAAGACTGAAACTA+TGG | 0.315805 | 4_3:-65060093 | None:intergenic |
| TATCCGCCACCTGTTGGTTA+TGG | 0.346369 | 4_3:+65058830 | Msa0656020:CDS |
| TTAGATGGTCTTTAATGTAT+TGG | 0.347515 | 4_3:+65059982 | Msa0656020:exon |
| CTGCTCTTGAGTCACATTCT+TGG | 0.350540 | 4_3:-65058475 | None:intergenic |
| TTTACTCAGCCTTTGATGTA+TGG | 0.351303 | 4_3:+65059524 | Msa0656020:intron |
| TGGGGTGTGCGGGGTGTGTG+GGG | 0.362329 | 4_3:-65059828 | None:intergenic |
| GGTGCACTTGGTGCAGGATA+TGG | 0.362461 | 4_3:+65058872 | Msa0656020:CDS |
| CCAACAGGTGGCGGATAACT+TGG | 0.370029 | 4_3:-65058824 | None:intergenic |
| TGCTCTTGAGTCACATTCTT+GGG | 0.380390 | 4_3:-65058474 | None:intergenic |
| GGGCCGTGTGGCTGCAATCC+TGG | 0.386883 | 4_3:-65059800 | None:intergenic |
| GGAGTGGCGGCGGTGGTGGT+GGG | 0.397931 | 4_3:+65059873 | Msa0656020:CDS |
| TGTCAGTCACAACCTTCTTC+AGG | 0.399189 | 4_3:-65056921 | None:intergenic |
| GTGGGAGTGGTAGTGGCAAC+AGG | 0.399618 | 4_3:+65059891 | Msa0656020:CDS |
| TTGGTAATATTCCTAGAAGC+TGG | 0.401173 | 4_3:+65056887 | Msa0656020:CDS |
| ATATCATATTACCTTAAATT+CGG | 0.410368 | 4_3:-65056652 | None:intergenic |
| GGTGGCAGGAGTGGCGGCGG+TGG | 0.414554 | 4_3:+65059866 | Msa0656020:CDS |
| TACTTATAGAAATGTGGAAC+TGG | 0.415437 | 4_3:+65056599 | Msa0656020:CDS |
| GGCGGCGGTGGTGGTGGGAG+TGG | 0.418537 | 4_3:+65059878 | Msa0656020:CDS |
| GATGTGAATGTGGGGTGTGC+GGG | 0.422760 | 4_3:-65059838 | None:intergenic |
| GGTCAGCCCAGCTCACTGTT+GGG | 0.423646 | 4_3:-65057880 | None:intergenic |
| CCTGTTGGTTATGGTTTGGT+TGG | 0.436777 | 4_3:+65058839 | Msa0656020:CDS |
| GGTGGTGGTGGGAGTGGTAG+TGG | 0.437497 | 4_3:+65059884 | Msa0656020:CDS |
| GGTAGTGGCAACAGGAGTAC+AGG | 0.437526 | 4_3:+65059899 | Msa0656020:CDS |
| ACTGAAAGATATGAATTAGA+TGG | 0.444319 | 4_3:+65058633 | Msa0656020:CDS |
| CTGTTGGTTATGGTTTGGTT+GGG | 0.444871 | 4_3:+65058840 | Msa0656020:CDS |
| CAGATACCGCCCATATTAGA+TGG | 0.449739 | 4_3:+65059967 | Msa0656020:exon |
| GTTCTACCGCCACCAAAGTC+TGG | 0.452167 | 4_3:+65058540 | Msa0656020:CDS |
| CTTGAGTCACATTCTTGGGA+AGG | 0.453398 | 4_3:-65058470 | None:intergenic |
| TGATTCCTCTGCTTCATCCC+AGG | 0.456779 | 4_3:+65057913 | Msa0656020:CDS |
| GCGGGGTGTGTGGGGTGTGT+GGG | 0.458579 | 4_3:-65059820 | None:intergenic |
| AGAGGTGGCAGGAGTGGCGG+CGG | 0.459052 | 4_3:+65059863 | Msa0656020:CDS |
| ATTATATGCAATTCTGCGAC+TGG | 0.459506 | 4_3:-65060152 | None:intergenic |
| CCACCTCTTTGATGTGAATG+TGG | 0.459961 | 4_3:-65059848 | None:intergenic |
| ATGCCGATGCTTCTGGCTGA+TGG | 0.460199 | 4_3:+65059578 | Msa0656020:CDS |
| GGTTTGGTTGGGAATCCATA+TGG | 0.472566 | 4_3:+65058851 | Msa0656020:CDS |
| CACCTCTTTGATGTGAATGT+GGG | 0.474178 | 4_3:-65059847 | None:intergenic |
| GCCACCTGTTGGTTATGGTT+TGG | 0.476814 | 4_3:+65058835 | Msa0656020:CDS |
| GGTATTATTCAGCTCCTCAA+TGG | 0.480446 | 4_3:-65056631 | None:intergenic |
| ACAATTCCCCAACAGTGAGC+TGG | 0.482296 | 4_3:+65057873 | Msa0656020:CDS |
| CATTAAAGACCATCTAATAT+GGG | 0.483236 | 4_3:-65059976 | None:intergenic |
| CCTGCACCAAGTGCACCATA+TGG | 0.484549 | 4_3:-65058866 | None:intergenic |
| GGTGCAGGATATGGTGCTCC+TGG | 0.485631 | 4_3:+65058881 | Msa0656020:CDS |
| GGGTCAGCCCAGCTCACTGT+TGG | 0.486511 | 4_3:-65057881 | None:intergenic |
| CCATATGGTGCACTTGGTGC+AGG | 0.490417 | 4_3:+65058866 | Msa0656020:CDS |
| AAAGATGCTTCTGAGAATAA+GGG | 0.490724 | 4_3:+65056564 | Msa0656020:CDS |
| TCAGCCTTTGATGTATGGAC+CGG | 0.491896 | 4_3:+65059529 | Msa0656020:intron |
| TGGTGCTCCTGGTCTTGCTC+AGG | 0.493057 | 4_3:+65058892 | Msa0656020:CDS |
| TGGTAATATTCCTAGAAGCT+GGG | 0.494736 | 4_3:+65056888 | Msa0656020:CDS |
| ATGGGCGGTATCTGCGCCCT+TGG | 0.495543 | 4_3:-65059958 | None:intergenic |
| TTGCTTACATTCATGATTTG+GGG | 0.499158 | 4_3:+65060107 | Msa0656020:three_prime_UTR |
| TATGGACCGGGTCAAACTCC+TGG | 0.500903 | 4_3:+65059542 | Msa0656020:CDS |
| ACCGCCACCAAAGTCTGGTC+AGG | 0.501499 | 4_3:+65058545 | Msa0656020:CDS |
| GGTCAGGAAAAGAACAGAAT+CGG | 0.514873 | 4_3:+65058561 | Msa0656020:CDS |
| CAATTCCCCAACAGTGAGCT+GGG | 0.520023 | 4_3:+65057874 | Msa0656020:CDS |
| CCAAGTTATCCGCCACCTGT+TGG | 0.524145 | 4_3:+65058824 | Msa0656020:CDS |
| CGTCTGTGTATTTGATACTA+CGG | 0.526755 | 4_3:-65058789 | None:intergenic |
| CCAACCAAACCATAACCAAC+AGG | 0.529349 | 4_3:-65058839 | None:intergenic |
| GGAAGGCACAACAATGATAG+TGG | 0.530070 | 4_3:+65059935 | Msa0656020:CDS |
| GGGTCAAACTCCTGGTGGAA+TGG | 0.533060 | 4_3:+65059550 | Msa0656020:CDS |
| TGCTTACATTCATGATTTGG+GGG | 0.534149 | 4_3:+65060108 | Msa0656020:three_prime_UTR |
| ATGAACCCGTCATTTAAGCT+TGG | 0.534802 | 4_3:+65057848 | Msa0656020:CDS |
| TGTCACCAAGCTTAAATGAC+GGG | 0.538870 | 4_3:-65057853 | None:intergenic |
| CACAACAATGATAGTGGCCA+AGG | 0.539081 | 4_3:+65059941 | Msa0656020:CDS |
| CATCAAAGAGGTGGCAGGAG+TGG | 0.541172 | 4_3:+65059857 | Msa0656020:CDS |
| CGTCCATCAGCCAGAAGCAT+CGG | 0.547362 | 4_3:-65059581 | None:intergenic |
| TGATGTGAATGTGGGGTGTG+CGG | 0.553606 | 4_3:-65059839 | None:intergenic |
| TCCTGACCAGACTTTGGTGG+CGG | 0.557563 | 4_3:-65058546 | None:intergenic |
| AAGAAGGTTGTGACTGACAT+TGG | 0.557751 | 4_3:+65056925 | Msa0656020:CDS |
| GGCATCATCGCCATTCCACC+AGG | 0.559593 | 4_3:-65059560 | None:intergenic |
| GGGAATCCATATGGTGCACT+TGG | 0.560561 | 4_3:+65058860 | Msa0656020:CDS |
| CAAAGAGGTGGCAGGAGTGG+CGG | 0.561139 | 4_3:+65059860 | Msa0656020:CDS |
| AGTACAGGCAGTTCAAGTAA+AGG | 0.561504 | 4_3:+65059914 | Msa0656020:CDS |
| TACTGCTGTTGAACTAGTCA+AGG | 0.567757 | 4_3:+65056957 | Msa0656020:CDS |
| ATCAGTGTGCTGAATATGCA+AGG | 0.569348 | 4_3:+65057816 | Msa0656020:CDS |
| ATGTGAATGTGGGGTGTGCG+GGG | 0.570602 | 4_3:-65059837 | None:intergenic |
| AAAGCCACAGGCTGATCAGA+AGG | 0.571982 | 4_3:+65058766 | Msa0656020:CDS |
| AAACCATAACCAACAGGTGG+CGG | 0.573239 | 4_3:-65058833 | None:intergenic |
| GTGTTCTTTAGCAAAGCCAC+AGG | 0.575206 | 4_3:+65058754 | Msa0656020:CDS |
| AAGATCACCTGAGCAAGACC+AGG | 0.576660 | 4_3:-65058899 | None:intergenic |
| ATTCACATCAAAGAGGTGGC+AGG | 0.578741 | 4_3:+65059852 | Msa0656020:CDS |
| GTCAGCCCAGCTCACTGTTG+GGG | 0.581711 | 4_3:-65057879 | None:intergenic |
| ACTGGCTTCTAAAGCCATTG+AGG | 0.587483 | 4_3:+65056617 | Msa0656020:CDS |
| CAGCCTTTGATGTATGGACC+GGG | 0.587599 | 4_3:+65059530 | Msa0656020:intron |
| TGTGGGGTGTGTGGGCCGTG+TGG | 0.587741 | 4_3:-65059812 | None:intergenic |
| CCACCTTTGTGATCTTCCCA+TGG | 0.594029 | 4_3:-65058518 | None:intergenic |
| TAAAATAATCTAGCTCGCAA+AGG | 0.599139 | 4_3:-65060026 | None:intergenic |
| TTGTCACCAAGCTTAAATGA+CGG | 0.599245 | 4_3:-65057854 | None:intergenic |
| CAACCAGGATTGCAGCCACA+CGG | 0.601565 | 4_3:+65059797 | Msa0656020:CDS |
| CTTCTGGCTGATGGACGCAT+CGG | 0.601935 | 4_3:+65059587 | Msa0656020:CDS |
| TTATATGCAATTCTGCGACT+GGG | 0.603618 | 4_3:-65060151 | None:intergenic |
| TGAAACCTGGGATGAAGCAG+AGG | 0.607973 | 4_3:-65057918 | None:intergenic |
| GTTGTGACTGACATTGGACC+TGG | 0.613238 | 4_3:+65056931 | Msa0656020:CDS |
| AGTTCAACAGCAGTAACTCC+AGG | 0.614866 | 4_3:-65056949 | None:intergenic |
| ATTCCACCAGGAGTTTGACC+CGG | 0.615378 | 4_3:-65059548 | None:intergenic |
| ACCTCTTTGATGTGAATGTG+GGG | 0.617289 | 4_3:-65059846 | None:intergenic |
| CAGGCAGTTCAAGTAAAGGA+AGG | 0.621598 | 4_3:+65059918 | Msa0656020:CDS |
| GGTAATATTCCTAGAAGCTG+GGG | 0.632899 | 4_3:+65056889 | Msa0656020:CDS |
| TGACCCGGTCCATACATCAA+AGG | 0.637581 | 4_3:-65059533 | None:intergenic |
| GTATAGGTACGAACTACTTG+AGG | 0.639531 | 4_3:-65060203 | None:intergenic |
| AGTCGATAAAAGCAAAGCCA+CGG | 0.657500 | 4_3:-65057784 | None:intergenic |
| GTATCAAATACACAGACGCA+AGG | 0.658627 | 4_3:+65058794 | Msa0656020:CDS |
| ACGGCCTTCTGATCAGCCTG+TGG | 0.664260 | 4_3:-65058770 | None:intergenic |
| CCACATTCACATCAAAGAGG+TGG | 0.664299 | 4_3:+65059848 | Msa0656020:CDS |
| GGACCGGGTCAAACTCCTGG+TGG | 0.664975 | 4_3:+65059545 | Msa0656020:CDS |
| ACCCCACATTCACATCAAAG+AGG | 0.667671 | 4_3:+65059845 | Msa0656020:CDS |
| ACCAAACCATAACCAACAGG+TGG | 0.672729 | 4_3:-65058836 | None:intergenic |
| ACAACAATGATAGTGGCCAA+GGG | 0.680477 | 4_3:+65059942 | Msa0656020:CDS |
| TAAAGACCATCTAATATGGG+CGG | 0.689612 | 4_3:-65059973 | None:intergenic |
| CCATGGGAAGATCACAAAGG+TGG | 0.690491 | 4_3:+65058518 | Msa0656020:CDS |
| AAGAACATTAGCAATAACCG+TGG | 0.725163 | 4_3:+65057767 | Msa0656020:CDS |
| ACACCATGGGAAGATCACAA+AGG | 0.771325 | 4_3:+65058515 | Msa0656020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAACTTTCAATTAAAAA+TGG | - | chr4_3:65057012-65057031 | None:intergenic | 10.0% |
| !!! | ATTTTTAATTGAAAGTTTTT+AGG | + | chr4_3:65057011-65057030 | Msa0656020:intron | 10.0% |
| !!! | TTTTTAATTGAAAGTTTTTA+GGG | + | chr4_3:65057012-65057031 | Msa0656020:intron | 10.0% |
| !! | TATCAAATAATATCTTTAAA+GGG | - | chr4_3:65057475-65057494 | None:intergenic | 10.0% |
| !! | TTATCAAATAATATCTTTAA+AGG | - | chr4_3:65057476-65057495 | None:intergenic | 10.0% |
| !! | AATATTATATATTAAGTAGA+TGG | - | chr4_3:65057643-65057662 | None:intergenic | 10.0% |
| !! | ATATCATATTACCTTAAATT+CGG | - | chr4_3:65056655-65056674 | None:intergenic | 15.0% |
| !!! | AAAGATATTATTTGATAATG+AGG | + | chr4_3:65057279-65057298 | Msa0656020:intron | 15.0% |
| !!! | AAGATATTATTTGATAATGA+GGG | + | chr4_3:65057280-65057299 | Msa0656020:intron | 15.0% |
| !!! | TTATTCATTAACTAGTTTAA+AGG | - | chr4_3:65059147-65059166 | None:intergenic | 15.0% |
| !!! | TTTTGTTACTTATAGAAATG+TGG | + | chr4_3:65056593-65056612 | Msa0656020:CDS | 20.0% |
| !! | CTTTCAATTAAAAATGGAAA+AGG | - | chr4_3:65057006-65057025 | None:intergenic | 20.0% |
| !!! | TTTTTAGGGATTATTTGTTA+TGG | + | chr4_3:65057026-65057045 | Msa0656020:intron | 20.0% |
| !!! | AGATATTATTTGATAATGAG+GGG | + | chr4_3:65057281-65057300 | Msa0656020:intron | 20.0% |
| !!! | ATTATTTGATAATATCTCCT+TGG | + | chr4_3:65057484-65057503 | Msa0656020:intron | 20.0% |
| !!! | GTTGATAGTATTGATATTTA+TGG | + | chr4_3:65057970-65057989 | Msa0656020:intron | 20.0% |
| !!! | GTATTGATATTTATGGTTAA+TGG | + | chr4_3:65057977-65057996 | Msa0656020:intron | 20.0% |
| !! | TAACAATAGTCATGAAAAAT+TGG | + | chr4_3:65058143-65058162 | Msa0656020:intron | 20.0% |
| !! | GTCATATTTCTCTTATAAAA+AGG | - | chr4_3:65059100-65059119 | None:intergenic | 20.0% |
| !! | TAAACTTACAAGTAAAATAG+AGG | + | chr4_3:65059248-65059267 | Msa0656020:intron | 20.0% |
| !! | AACTTCTATGTAAAATACTT+GGG | - | chr4_3:65059423-65059442 | None:intergenic | 20.0% |
| !! | GCAAAAAATCGTCTTTTTAT+TGG | + | chr4_3:65056868-65056887 | Msa0656020:CDS | 25.0% |
| ! | ACTTATATAGAATACTACCA+AGG | - | chr4_3:65057504-65057523 | None:intergenic | 25.0% |
| !!! | TTATTTGTTAGTAGCCTTTT+AGG | + | chr4_3:65057555-65057574 | Msa0656020:intron | 25.0% |
| !!! | TATTTGTTAGTAGCCTTTTA+GGG | + | chr4_3:65057556-65057575 | Msa0656020:intron | 25.0% |
| ! | CAATAGAAACTAGAGAATAA+TGG | - | chr4_3:65057668-65057687 | None:intergenic | 25.0% |
| !! | ATTGATTTCTTCTGTGTTAT+TGG | + | chr4_3:65057684-65057703 | Msa0656020:intron | 25.0% |
| ! | TATCAACAGAGCTTAAAATA+AGG | - | chr4_3:65057957-65057976 | None:intergenic | 25.0% |
| ! | TTGACATTGATGTACATTAA+AGG | - | chr4_3:65058066-65058085 | None:intergenic | 25.0% |
| ! | ATGAAAAATTGGAAACGTTT+GGG | + | chr4_3:65058154-65058173 | Msa0656020:intron | 25.0% |
| ! | TTTAATCCTTGATTACTCTA+AGG | - | chr4_3:65058266-65058285 | None:intergenic | 25.0% |
| ! | ACTGAAAGATATGAATTAGA+TGG | + | chr4_3:65058633-65058652 | Msa0656020:CDS | 25.0% |
| ! | AACTGTTGCAAAAATTGATT+AGG | + | chr4_3:65058700-65058719 | Msa0656020:intron | 25.0% |
| !!! | TAGGTTTGTTATAAGTTTTC+AGG | + | chr4_3:65058719-65058738 | Msa0656020:intron | 25.0% |
| ! | ATTTCTCTTATAAAAAGGAC+CGG | - | chr4_3:65059095-65059114 | None:intergenic | 25.0% |
| !! | ATAAATGACAACGGTATTTT+TGG | - | chr4_3:65059184-65059203 | None:intergenic | 25.0% |
| ! | GAGACATTAATAAATGACAA+CGG | - | chr4_3:65059193-65059212 | None:intergenic | 25.0% |
| !!! | AAGTAAAATAGAGGTATTGA+AGG | + | chr4_3:65059257-65059276 | Msa0656020:intron | 25.0% |
| !! | TAAGAGACATTGAGTATTTT+TGG | - | chr4_3:65059319-65059338 | None:intergenic | 25.0% |
| ! | CAACTTCTATGTAAAATACT+TGG | - | chr4_3:65059424-65059443 | None:intergenic | 25.0% |
| ! | CATTAAAGACCATCTAATAT+GGG | - | chr4_3:65059979-65059998 | None:intergenic | 25.0% |
| ! | ACATTAAAGACCATCTAATA+TGG | - | chr4_3:65059980-65059999 | None:intergenic | 25.0% |
| ! | TTAGATGGTCTTTAATGTAT+TGG | + | chr4_3:65059982-65060001 | Msa0656020:exon | 25.0% |
| ! | TAGATGGTCTTTAATGTATT+GGG | + | chr4_3:65059983-65060002 | Msa0656020:exon | 25.0% |
| ! | AAAAGATGCTTCTGAGAATA+AGG | + | chr4_3:65056563-65056582 | Msa0656020:CDS | 30.0% |
| ! | AAAGATGCTTCTGAGAATAA+GGG | + | chr4_3:65056564-65056583 | Msa0656020:CDS | 30.0% |
| TACTTATAGAAATGTGGAAC+TGG | + | chr4_3:65056599-65056618 | Msa0656020:CDS | 30.0% | |
| GCTGAATAATACCGAATTTA+AGG | + | chr4_3:65056641-65056660 | Msa0656020:CDS | 30.0% | |
| TAAGTAGCTAACAACTTCAA+AGG | - | chr4_3:65056707-65056726 | None:intergenic | 30.0% | |
| CTATCATTATGGAATTGCAT+TGG | + | chr4_3:65057084-65057103 | Msa0656020:intron | 30.0% | |
| TTCTGATACGATACTATGTA+TGG | + | chr4_3:65057149-65057168 | Msa0656020:intron | 30.0% | |
| TCTGATACGATACTATGTAT+GGG | + | chr4_3:65057150-65057169 | Msa0656020:intron | 30.0% | |
| ATTCTCTTACTCTCTCTATT+GGG | - | chr4_3:65057182-65057201 | None:intergenic | 30.0% | |
| TATTCTCTTACTCTCTCTAT+TGG | - | chr4_3:65057183-65057202 | None:intergenic | 30.0% | |
| TATTCTATATAAGTGCGTAG+AGG | + | chr4_3:65057510-65057529 | Msa0656020:intron | 30.0% | |
| ATTCTATATAAGTGCGTAGA+GGG | + | chr4_3:65057511-65057530 | Msa0656020:intron | 30.0% | |
| !!! | TTTTTTCTATTCCTTGACTC+AGG | + | chr4_3:65057739-65057758 | Msa0656020:intron | 30.0% |
| ! | CAGAGGAATCAGAATTTTTA+GGG | - | chr4_3:65057904-65057923 | None:intergenic | 30.0% |
| CATGAAAAATTGGAAACGTT+TGG | + | chr4_3:65058153-65058172 | Msa0656020:intron | 30.0% | |
| AAGCAAAACACAATTTCTTC+CGG | - | chr4_3:65058221-65058240 | None:intergenic | 30.0% | |
| AGCTATGAACTACATTACTA+TGG | + | chr4_3:65058307-65058326 | Msa0656020:intron | 30.0% | |
| ATTCTTAAACATGCATGAAC+AGG | + | chr4_3:65058425-65058444 | Msa0656020:intron | 30.0% | |
| !! | TGTTTTCATTGTGTTACTGT+TGG | + | chr4_3:65058990-65059009 | Msa0656020:intron | 30.0% |
| ! | AATGTCACTATTTGCTAGAA+TGG | - | chr4_3:65059026-65059045 | None:intergenic | 30.0% |
| GAGTGTCAAATATGTAAAAG+AGG | - | chr4_3:65059069-65059088 | None:intergenic | 30.0% | |
| CTAGTTTAAAGGAATTTCTG+TGG | - | chr4_3:65059136-65059155 | None:intergenic | 30.0% | |
| TCTCTTATAAACAAGATCAG+AGG | + | chr4_3:65059332-65059351 | Msa0656020:intron | 30.0% | |
| CTCTTATAAACAAGATCAGA+GGG | + | chr4_3:65059333-65059352 | Msa0656020:intron | 30.0% | |
| ATTAATATATGCTGAACGTG+GGG | - | chr4_3:65059475-65059494 | None:intergenic | 30.0% | |
| GATTAATATATGCTGAACGT+GGG | - | chr4_3:65059476-65059495 | None:intergenic | 30.0% | |
| AGATTAATATATGCTGAACG+TGG | - | chr4_3:65059477-65059496 | None:intergenic | 30.0% | |
| GCAAAAGAAAACATATTCTC+AGG | - | chr4_3:65059771-65059790 | None:intergenic | 30.0% | |
| ! | GAGAATATGTTTTCTTTTGC+AGG | + | chr4_3:65059771-65059790 | Msa0656020:intron | 30.0% |
| ! | TAAAATAATCTAGCTCGCAA+AGG | - | chr4_3:65060029-65060048 | None:intergenic | 30.0% |
| TCTTGCTTACATTCATGATT+TGG | + | chr4_3:65060105-65060124 | Msa0656020:three_prime_UTR | 30.0% | |
| CTTGCTTACATTCATGATTT+GGG | + | chr4_3:65060106-65060125 | Msa0656020:three_prime_UTR | 30.0% | |
| TTGCTTACATTCATGATTTG+GGG | + | chr4_3:65060107-65060126 | Msa0656020:three_prime_UTR | 30.0% | |
| AGTTGTTAGCTACTTAGCTT+CGG | + | chr4_3:65056711-65056730 | Msa0656020:intron | 35.0% | |
| AATTGATCATTGACACAGTC+AGG | - | chr4_3:65056811-65056830 | None:intergenic | 35.0% | |
| TGTCAATGATCAATTGTCTC+AGG | + | chr4_3:65056816-65056835 | Msa0656020:intron | 35.0% | |
| GTCAATGATCAATTGTCTCA+GGG | + | chr4_3:65056817-65056836 | Msa0656020:intron | 35.0% | |
| ! | TTGGTAATATTCCTAGAAGC+TGG | + | chr4_3:65056887-65056906 | Msa0656020:CDS | 35.0% |
| TGGTAATATTCCTAGAAGCT+GGG | + | chr4_3:65056888-65056907 | Msa0656020:CDS | 35.0% | |
| !!! | CGATTTTTTGACGATGATTC+AGG | - | chr4_3:65057057-65057076 | None:intergenic | 35.0% |
| ATCATCGTCAAAAAATCGCT+TGG | + | chr4_3:65057059-65057078 | Msa0656020:intron | 35.0% | |
| ATCGCTTGGAACTATCATTA+TGG | + | chr4_3:65057073-65057092 | Msa0656020:intron | 35.0% | |
| ! | AATATCTTTAAAGGGCAACC+CGG | - | chr4_3:65057467-65057486 | None:intergenic | 35.0% |
| AAGAACATTAGCAATAACCG+TGG | + | chr4_3:65057767-65057786 | Msa0656020:CDS | 35.0% | |
| TTGTCACCAAGCTTAAATGA+CGG | - | chr4_3:65057857-65057876 | None:intergenic | 35.0% | |
| ! | GCAGAGGAATCAGAATTTTT+AGG | - | chr4_3:65057905-65057924 | None:intergenic | 35.0% |
| ACACATGTGAATTGAAACCT+GGG | - | chr4_3:65057933-65057952 | None:intergenic | 35.0% | |
| AACACATGTGAATTGAAACC+TGG | - | chr4_3:65057934-65057953 | None:intergenic | 35.0% | |
| TAAGACATCTGCAACTATGA+TGG | + | chr4_3:65058026-65058045 | Msa0656020:intron | 35.0% | |
| ACGATAGAGAAATTTGTGTC+CGG | + | chr4_3:65058199-65058218 | Msa0656020:intron | 35.0% | |
| !! | TACTCTAAGGTGACTTAAGA+TGG | - | chr4_3:65058253-65058272 | None:intergenic | 35.0% |
| AAGTCACCTTAGAGTAATCA+AGG | + | chr4_3:65058257-65058276 | Msa0656020:intron | 35.0% | |
| ! | CAATGCATCTAGGATAGAAA+TGG | - | chr4_3:65058381-65058400 | None:intergenic | 35.0% |
| ! | AAGAAGCTTTTTGAACACCA+TGG | + | chr4_3:65058501-65058520 | Msa0656020:CDS | 35.0% |
| ! | AGAAGCTTTTTGAACACCAT+GGG | + | chr4_3:65058502-65058521 | Msa0656020:CDS | 35.0% |
| CGTCTGTGTATTTGATACTA+CGG | - | chr4_3:65058792-65058811 | None:intergenic | 35.0% | |
| ! | AAAGAGGTATGCATGCAATA+AGG | - | chr4_3:65059053-65059072 | None:intergenic | 35.0% |
| TATTAATGTCTCCACTTACC+TGG | + | chr4_3:65059201-65059220 | Msa0656020:intron | 35.0% | |
| ATTAATGTCTCCACTTACCT+GGG | + | chr4_3:65059202-65059221 | Msa0656020:intron | 35.0% | |
| ! | TAATCTGAGATTCTGATGAC+TGG | + | chr4_3:65059491-65059510 | Msa0656020:intron | 35.0% |
| TTTACTCAGCCTTTGATGTA+TGG | + | chr4_3:65059524-65059543 | Msa0656020:intron | 35.0% | |
| TAAAGACCATCTAATATGGG+CGG | - | chr4_3:65059976-65059995 | None:intergenic | 35.0% | |
| TGTAAGCAAGACTGAAACTA+TGG | - | chr4_3:65060096-65060115 | None:intergenic | 35.0% | |
| ! | TGCTTACATTCATGATTTGG+GGG | + | chr4_3:65060108-65060127 | Msa0656020:three_prime_UTR | 35.0% |
| TTATATGCAATTCTGCGACT+GGG | - | chr4_3:65060154-65060173 | None:intergenic | 35.0% | |
| ATTATATGCAATTCTGCGAC+TGG | - | chr4_3:65060155-65060174 | None:intergenic | 35.0% | |
| GGTATTATTCAGCTCCTCAA+TGG | - | chr4_3:65056634-65056653 | None:intergenic | 40.0% | |
| CTTCAAAGGAGAAGGATCTA+TGG | - | chr4_3:65056693-65056712 | None:intergenic | 40.0% | |
| GCTAACAACTTCAAAGGAGA+AGG | - | chr4_3:65056701-65056720 | None:intergenic | 40.0% | |
| ATGATCAATTGTCTCAGGGT+AGG | + | chr4_3:65056821-65056840 | Msa0656020:intron | 40.0% | |
| GGTAATATTCCTAGAAGCTG+GGG | + | chr4_3:65056889-65056908 | Msa0656020:CDS | 40.0% | |
| AAGAAGGTTGTGACTGACAT+TGG | + | chr4_3:65056925-65056944 | Msa0656020:CDS | 40.0% | |
| TACTGCTGTTGAACTAGTCA+AGG | + | chr4_3:65056957-65056976 | Msa0656020:CDS | 40.0% | |
| AGATCCTGACATTGAGTACT+TGG | - | chr4_3:65057124-65057143 | None:intergenic | 40.0% | |
| AAGTACTCAATGTCAGGATC+TGG | + | chr4_3:65057123-65057142 | Msa0656020:intron | 40.0% | |
| TTACTCTCTCTATTGGGCTA+AGG | - | chr4_3:65057176-65057195 | None:intergenic | 40.0% | |
| !! | TTGATAATGAGGGGTAACCT+TGG | + | chr4_3:65057290-65057309 | Msa0656020:intron | 40.0% |
| GTTGTTGTCATGTGACTGAA+AGG | + | chr4_3:65057326-65057345 | Msa0656020:intron | 40.0% | |
| AACAGCCTCTTGTGTAAAAC+AGG | + | chr4_3:65057369-65057388 | Msa0656020:intron | 40.0% | |
| ACAGCCTCTTGTGTAAAACA+GGG | + | chr4_3:65057370-65057389 | Msa0656020:intron | 40.0% | |
| ! | CTTACCCTGTTTTACACAAG+AGG | - | chr4_3:65057377-65057396 | None:intergenic | 40.0% |
| CTCTTGTGTAAAACAGGGTA+AGG | + | chr4_3:65057375-65057394 | Msa0656020:intron | 40.0% | |
| GTTGCGTACAATACACCAAA+TGG | + | chr4_3:65057397-65057416 | Msa0656020:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | + | chr4_3:65057401-65057420 | Msa0656020:intron | 40.0% | |
| GTTCTTCATATCCTGAGTCA+AGG | - | chr4_3:65057753-65057772 | None:intergenic | 40.0% | |
| AGTCGATAAAAGCAAAGCCA+CGG | - | chr4_3:65057787-65057806 | None:intergenic | 40.0% | |
| ATCAGTGTGCTGAATATGCA+AGG | + | chr4_3:65057816-65057835 | Msa0656020:CDS | 40.0% | |
| ATGAACCCGTCATTTAAGCT+TGG | + | chr4_3:65057848-65057867 | Msa0656020:CDS | 40.0% | |
| TGTCACCAAGCTTAAATGAC+GGG | - | chr4_3:65057856-65057875 | None:intergenic | 40.0% | |
| !! | AAACGTTTGGGTTGTCAGAT+AGG | + | chr4_3:65058166-65058185 | Msa0656020:intron | 40.0% |
| ! | AGATACTAGATTGCTGTTGC+TGG | + | chr4_3:65058335-65058354 | Msa0656020:intron | 40.0% |
| AAACATGCATGAACAGGTGA+AGG | + | chr4_3:65058431-65058450 | Msa0656020:intron | 40.0% | |
| TGCTCTTGAGTCACATTCTT+GGG | - | chr4_3:65058477-65058496 | None:intergenic | 40.0% | |
| ! | TTCTTTTCCTGACCAGACTT+TGG | - | chr4_3:65058555-65058574 | None:intergenic | 40.0% |
| GGTCAGGAAAAGAACAGAAT+CGG | + | chr4_3:65058561-65058580 | Msa0656020:CDS | 40.0% | |
| GTATCAAATACACAGACGCA+AGG | + | chr4_3:65058794-65058813 | Msa0656020:CDS | 40.0% | |
| !! | CTGTTGGTTATGGTTTGGTT+GGG | + | chr4_3:65058840-65058859 | Msa0656020:CDS | 40.0% |
| TCTCTTATAAAAAGGACCGG+CGG | - | chr4_3:65059092-65059111 | None:intergenic | 40.0% | |
| TTAATGTCTCCACTTACCTG+GGG | + | chr4_3:65059203-65059222 | Msa0656020:intron | 40.0% | |
| ! | ACAAAATTCCCATTTTCCCC+AGG | - | chr4_3:65059222-65059241 | None:intergenic | 40.0% |
| TGAACGTGGGGATAAATCAA+TGG | - | chr4_3:65059463-65059482 | None:intergenic | 40.0% | |
| GAAAACATATTCTCAGGCTC+TGG | - | chr4_3:65059765-65059784 | None:intergenic | 40.0% | |
| ACCTCTTTGATGTGAATGTG+GGG | - | chr4_3:65059849-65059868 | None:intergenic | 40.0% | |
| CACCTCTTTGATGTGAATGT+GGG | - | chr4_3:65059850-65059869 | None:intergenic | 40.0% | |
| AGTACAGGCAGTTCAAGTAA+AGG | + | chr4_3:65059914-65059933 | Msa0656020:CDS | 40.0% | |
| !! | ACAACAATGATAGTGGCCAA+GGG | + | chr4_3:65059942-65059961 | Msa0656020:CDS | 40.0% |
| !! | ACTGGCTTCTAAAGCCATTG+AGG | + | chr4_3:65056617-65056636 | Msa0656020:CDS | 45.0% |
| TGTCAGTCACAACCTTCTTC+AGG | - | chr4_3:65056924-65056943 | None:intergenic | 45.0% | |
| AGTTCAACAGCAGTAACTCC+AGG | - | chr4_3:65056952-65056971 | None:intergenic | 45.0% | |
| ACCTCCAAGTACTCAATGTC+AGG | + | chr4_3:65057117-65057136 | Msa0656020:intron | 45.0% | |
| TCCTGACATTGAGTACTTGG+AGG | - | chr4_3:65057121-65057140 | None:intergenic | 45.0% | |
| GTCATGTGACTGAAAGGTCA+CGG | + | chr4_3:65057332-65057351 | Msa0656020:intron | 45.0% | |
| TCATGTGACTGAAAGGTCAC+GGG | + | chr4_3:65057333-65057352 | Msa0656020:intron | 45.0% | |
| ! | TTACACAAGAGGCTGTTTCC+AGG | - | chr4_3:65057366-65057385 | None:intergenic | 45.0% |
| GCGTACAATACACCAAATGG+TGG | + | chr4_3:65057400-65057419 | Msa0656020:intron | 45.0% | |
| !!! | TGTTAGTAGCCTTTTAGGGC+CGG | + | chr4_3:65057560-65057579 | Msa0656020:intron | 45.0% |
| GACATCTGCAACTATGATGG+AGG | + | chr4_3:65058029-65058048 | Msa0656020:intron | 45.0% | |
| !! | CTTGCAAAGTGCTGCTTTCT+AGG | + | chr4_3:65058095-65058114 | Msa0656020:intron | 45.0% |
| GCGTACAAAGCAATGCATCT+AGG | - | chr4_3:65058391-65058410 | None:intergenic | 45.0% | |
| CTTGAGTCACATTCTTGGGA+AGG | - | chr4_3:65058473-65058492 | None:intergenic | 45.0% | |
| CTGCTCTTGAGTCACATTCT+TGG | - | chr4_3:65058478-65058497 | None:intergenic | 45.0% | |
| ACACCATGGGAAGATCACAA+AGG | + | chr4_3:65058515-65058534 | Msa0656020:CDS | 45.0% | |
| ! | TTTTCCTGACCAGACTTTGG+TGG | - | chr4_3:65058552-65058571 | None:intergenic | 45.0% |
| GTGTTCTTTAGCAAAGCCAC+AGG | + | chr4_3:65058754-65058773 | Msa0656020:CDS | 45.0% | |
| AAACCATAACCAACAGGTGG+CGG | - | chr4_3:65058836-65058855 | None:intergenic | 45.0% | |
| ACCAAACCATAACCAACAGG+TGG | - | chr4_3:65058839-65058858 | None:intergenic | 45.0% | |
| CCAACCAAACCATAACCAAC+AGG | - | chr4_3:65058842-65058861 | None:intergenic | 45.0% | |
| !! | CCTGTTGGTTATGGTTTGGT+TGG | + | chr4_3:65058839-65058858 | Msa0656020:CDS | 45.0% |
| ! | GGTTTGGTTGGGAATCCATA+TGG | + | chr4_3:65058851-65058870 | Msa0656020:CDS | 45.0% |
| TACATATTTGACACTCCCGC+CGG | + | chr4_3:65059073-65059092 | Msa0656020:intron | 45.0% | |
| CTCTTATAAAAAGGACCGGC+GGG | - | chr4_3:65059091-65059110 | None:intergenic | 45.0% | |
| TCCACTTACCTGGGGAAAAT+GGG | + | chr4_3:65059211-65059230 | Msa0656020:intron | 45.0% | |
| TCAGCCTTTGATGTATGGAC+CGG | + | chr4_3:65059529-65059548 | Msa0656020:intron | 45.0% | |
| ! | TTCTTTTGCAGGCAACAACC+AGG | + | chr4_3:65059782-65059801 | Msa0656020:intron | 45.0% |
| ACCCCACATTCACATCAAAG+AGG | + | chr4_3:65059845-65059864 | Msa0656020:CDS | 45.0% | |
| CCACCTCTTTGATGTGAATG+TGG | - | chr4_3:65059851-65059870 | None:intergenic | 45.0% | |
| CCACATTCACATCAAAGAGG+TGG | + | chr4_3:65059848-65059867 | Msa0656020:CDS | 45.0% | |
| ATTCACATCAAAGAGGTGGC+AGG | + | chr4_3:65059852-65059871 | Msa0656020:CDS | 45.0% | |
| CAGGCAGTTCAAGTAAAGGA+AGG | + | chr4_3:65059918-65059937 | Msa0656020:CDS | 45.0% | |
| ! | GGAAGGCACAACAATGATAG+TGG | + | chr4_3:65059935-65059954 | Msa0656020:CDS | 45.0% |
| !! | CACAACAATGATAGTGGCCA+AGG | + | chr4_3:65059941-65059960 | Msa0656020:CDS | 45.0% |
| CAGATACCGCCCATATTAGA+TGG | + | chr4_3:65059967-65059986 | Msa0656020:exon | 45.0% | |
| !! | TCTTTTTCGCCCCAGCTTCT+AGG | - | chr4_3:65056901-65056920 | None:intergenic | 50.0% |
| GGGCGAAAAAGACCTGAAGA+AGG | + | chr4_3:65056909-65056928 | Msa0656020:CDS | 50.0% | |
| GTTGTGACTGACATTGGACC+TGG | + | chr4_3:65056931-65056950 | Msa0656020:CDS | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | - | chr4_3:65057310-65057329 | None:intergenic | 50.0% | |
| TCAGCAAAGTCTCTTGCTGC+CGG | - | chr4_3:65057582-65057601 | None:intergenic | 50.0% | |
| TTTGCTGAGGAGCTTTGCTC+TGG | + | chr4_3:65057594-65057613 | Msa0656020:intron | 50.0% | |
| ACAATTCCCCAACAGTGAGC+TGG | + | chr4_3:65057873-65057892 | Msa0656020:CDS | 50.0% | |
| CAATTCCCCAACAGTGAGCT+GGG | + | chr4_3:65057874-65057893 | Msa0656020:CDS | 50.0% | |
| TGATTCCTCTGCTTCATCCC+AGG | + | chr4_3:65057913-65057932 | Msa0656020:CDS | 50.0% | |
| TGAAACCTGGGATGAAGCAG+AGG | - | chr4_3:65057921-65057940 | None:intergenic | 50.0% | |
| CCACCTTTGTGATCTTCCCA+TGG | - | chr4_3:65058521-65058540 | None:intergenic | 50.0% | |
| CCATGGGAAGATCACAAAGG+TGG | + | chr4_3:65058518-65058537 | Msa0656020:CDS | 50.0% | |
| AAAGCCACAGGCTGATCAGA+AGG | + | chr4_3:65058766-65058785 | Msa0656020:CDS | 50.0% | |
| ! | TATCCGCCACCTGTTGGTTA+TGG | + | chr4_3:65058830-65058849 | Msa0656020:CDS | 50.0% |
| ! | GCCACCTGTTGGTTATGGTT+TGG | + | chr4_3:65058835-65058854 | Msa0656020:CDS | 50.0% |
| GGGAATCCATATGGTGCACT+TGG | + | chr4_3:65058860-65058879 | Msa0656020:CDS | 50.0% | |
| AAGATCACCTGAGCAAGACC+AGG | - | chr4_3:65058902-65058921 | None:intergenic | 50.0% | |
| CTCCACTTACCTGGGGAAAA+TGG | + | chr4_3:65059210-65059229 | Msa0656020:intron | 50.0% | |
| ! | TCCCATTTTCCCCAGGTAAG+TGG | - | chr4_3:65059215-65059234 | None:intergenic | 50.0% |
| CAGCCTTTGATGTATGGACC+GGG | + | chr4_3:65059530-65059549 | Msa0656020:intron | 50.0% | |
| TGACCCGGTCCATACATCAA+AGG | - | chr4_3:65059536-65059555 | None:intergenic | 50.0% | |
| ATTCCACCAGGAGTTTGACC+CGG | - | chr4_3:65059551-65059570 | None:intergenic | 50.0% | |
| !! | GGCTCTGGATTCAAGCAACT+AGG | - | chr4_3:65059750-65059769 | None:intergenic | 50.0% |
| TGATGTGAATGTGGGGTGTG+CGG | - | chr4_3:65059842-65059861 | None:intergenic | 50.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | + | chr4_3:65057345-65057364 | Msa0656020:intron | 55.0% | |
| CTAGAGCTCCCGCATATGCA+GGG | - | chr4_3:65057440-65057459 | None:intergenic | 55.0% | |
| ACTAGAGCTCCCGCATATGC+AGG | - | chr4_3:65057441-65057460 | None:intergenic | 55.0% | |
| AAGTGCGTAGAGGGAGTTCG+AGG | + | chr4_3:65057520-65057539 | Msa0656020:intron | 55.0% | |
| GGCAGCAAGAGACTTTGCTG+AGG | + | chr4_3:65057581-65057600 | Msa0656020:intron | 55.0% | |
| GTTCTACCGCCACCAAAGTC+TGG | + | chr4_3:65058540-65058559 | Msa0656020:CDS | 55.0% | |
| TCCTGACCAGACTTTGGTGG+CGG | - | chr4_3:65058549-65058568 | None:intergenic | 55.0% | |
| !! | CCAACAGGTGGCGGATAACT+TGG | - | chr4_3:65058827-65058846 | None:intergenic | 55.0% |
| CCAAGTTATCCGCCACCTGT+TGG | + | chr4_3:65058824-65058843 | Msa0656020:CDS | 55.0% | |
| CCTGCACCAAGTGCACCATA+TGG | - | chr4_3:65058869-65058888 | None:intergenic | 55.0% | |
| !! | CCATATGGTGCACTTGGTGC+AGG | + | chr4_3:65058866-65058885 | Msa0656020:CDS | 55.0% |
| !! | GGTGCACTTGGTGCAGGATA+TGG | + | chr4_3:65058872-65058891 | Msa0656020:CDS | 55.0% |
| TATGGACCGGGTCAAACTCC+TGG | + | chr4_3:65059542-65059561 | Msa0656020:CDS | 55.0% | |
| GGGTCAAACTCCTGGTGGAA+TGG | + | chr4_3:65059550-65059569 | Msa0656020:CDS | 55.0% | |
| ! | ATGCCGATGCTTCTGGCTGA+TGG | + | chr4_3:65059578-65059597 | Msa0656020:CDS | 55.0% |
| ! | CGTCCATCAGCCAGAAGCAT+CGG | - | chr4_3:65059584-65059603 | None:intergenic | 55.0% |
| ! | CTTCTGGCTGATGGACGCAT+CGG | + | chr4_3:65059587-65059606 | Msa0656020:CDS | 55.0% |
| CAACCAGGATTGCAGCCACA+CGG | + | chr4_3:65059797-65059816 | Msa0656020:CDS | 55.0% | |
| ATGTGAATGTGGGGTGTGCG+GGG | - | chr4_3:65059840-65059859 | None:intergenic | 55.0% | |
| GATGTGAATGTGGGGTGTGC+GGG | - | chr4_3:65059841-65059860 | None:intergenic | 55.0% | |
| CATCAAAGAGGTGGCAGGAG+TGG | + | chr4_3:65059857-65059876 | Msa0656020:CDS | 55.0% | |
| ! | GGTAGTGGCAACAGGAGTAC+AGG | + | chr4_3:65059899-65059918 | Msa0656020:CDS | 55.0% |
| AGGGGTAACCTTGGCGCAAC+TGG | + | chr4_3:65057299-65057318 | Msa0656020:intron | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | + | chr4_3:65057413-65057432 | Msa0656020:intron | 60.0% |
| CATATGCAGGGTCCGGGAAG+GGG | - | chr4_3:65057428-65057447 | None:intergenic | 60.0% | |
| GCATATGCAGGGTCCGGGAA+GGG | - | chr4_3:65057429-65057448 | None:intergenic | 60.0% | |
| CTTCCCGGACCCTGCATATG+CGG | + | chr4_3:65057428-65057447 | Msa0656020:intron | 60.0% | |
| TTCCCGGACCCTGCATATGC+GGG | + | chr4_3:65057429-65057448 | Msa0656020:intron | 60.0% | |
| ! | ATGCGGGAGCTCTAGTGCAC+CGG | + | chr4_3:65057445-65057464 | Msa0656020:intron | 60.0% |
| CTCTTGCTGCCGGCCCTAAA+AGG | - | chr4_3:65057572-65057591 | None:intergenic | 60.0% | |
| GTCAGCCCAGCTCACTGTTG+GGG | - | chr4_3:65057882-65057901 | None:intergenic | 60.0% | |
| GGTCAGCCCAGCTCACTGTT+GGG | - | chr4_3:65057883-65057902 | None:intergenic | 60.0% | |
| ACCGCCACCAAAGTCTGGTC+AGG | + | chr4_3:65058545-65058564 | Msa0656020:CDS | 60.0% | |
| ACGGCCTTCTGATCAGCCTG+TGG | - | chr4_3:65058773-65058792 | None:intergenic | 60.0% | |
| GGTGCAGGATATGGTGCTCC+TGG | + | chr4_3:65058881-65058900 | Msa0656020:CDS | 60.0% | |
| !! | TGGTGCTCCTGGTCTTGCTC+AGG | + | chr4_3:65058892-65058911 | Msa0656020:CDS | 60.0% |
| GGCATCATCGCCATTCCACC+AGG | - | chr4_3:65059563-65059582 | None:intergenic | 60.0% | |
| GGCGATGATGCCGATGCTTC+TGG | + | chr4_3:65059571-65059590 | Msa0656020:CDS | 60.0% | |
| CAAAGAGGTGGCAGGAGTGG+CGG | + | chr4_3:65059860-65059879 | Msa0656020:CDS | 60.0% | |
| !! | GTGGGAGTGGTAGTGGCAAC+AGG | + | chr4_3:65059891-65059910 | Msa0656020:CDS | 60.0% |
| CGGGAAGGGGTCCCACCATT+TGG | - | chr4_3:65057415-65057434 | None:intergenic | 65.0% | |
| CGCATATGCAGGGTCCGGGA+AGG | - | chr4_3:65057430-65057449 | None:intergenic | 65.0% | |
| CTCCCGCATATGCAGGGTCC+GGG | - | chr4_3:65057434-65057453 | None:intergenic | 65.0% | |
| GCTCCCGCATATGCAGGGTC+CGG | - | chr4_3:65057435-65057454 | None:intergenic | 65.0% | |
| ! | TGCGGGAGCTCTAGTGCACC+GGG | + | chr4_3:65057446-65057465 | Msa0656020:intron | 65.0% |
| GGGTCAGCCCAGCTCACTGT+TGG | - | chr4_3:65057884-65057903 | None:intergenic | 65.0% | |
| GGACCGGGTCAAACTCCTGG+TGG | + | chr4_3:65059545-65059564 | Msa0656020:CDS | 65.0% | |
| !! | GGTGGTGGTGGGAGTGGTAG+TGG | + | chr4_3:65059884-65059903 | Msa0656020:CDS | 65.0% |
| ATGGGCGGTATCTGCGCCCT+TGG | - | chr4_3:65059961-65059980 | None:intergenic | 65.0% | |
| GGGCCGTGTGGCTGCAATCC+TGG | - | chr4_3:65059803-65059822 | None:intergenic | 70.0% | |
| TGTGGGGTGTGTGGGCCGTG+TGG | - | chr4_3:65059815-65059834 | None:intergenic | 70.0% | |
| GCGGGGTGTGTGGGGTGTGT+GGG | - | chr4_3:65059823-65059842 | None:intergenic | 70.0% | |
| TGCGGGGTGTGTGGGGTGTG+TGG | - | chr4_3:65059824-65059843 | None:intergenic | 70.0% | |
| TGGGGTGTGCGGGGTGTGTG+GGG | - | chr4_3:65059831-65059850 | None:intergenic | 70.0% | |
| GTGGGGTGTGCGGGGTGTGT+GGG | - | chr4_3:65059832-65059851 | None:intergenic | 70.0% | |
| TGTGGGGTGTGCGGGGTGTG+TGG | - | chr4_3:65059833-65059852 | None:intergenic | 70.0% | |
| AGAGGTGGCAGGAGTGGCGG+CGG | + | chr4_3:65059863-65059882 | Msa0656020:CDS | 70.0% | |
| ! | AGGAGTGGCGGCGGTGGTGG+TGG | + | chr4_3:65059872-65059891 | Msa0656020:CDS | 75.0% |
| ! | GGAGTGGCGGCGGTGGTGGT+GGG | + | chr4_3:65059873-65059892 | Msa0656020:CDS | 75.0% |
| ! | GGTGGCAGGAGTGGCGGCGG+TGG | + | chr4_3:65059866-65059885 | Msa0656020:CDS | 80.0% |
| ! | GGCAGGAGTGGCGGCGGTGG+TGG | + | chr4_3:65059869-65059888 | Msa0656020:CDS | 80.0% |
| !!! | GGCGGCGGTGGTGGTGGGAG+TGG | + | chr4_3:65059878-65059897 | Msa0656020:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 65056546 | 65060215 | 65056546 | ID=Msa0656020;Name=Msa0656020 |
| chr4_3 | mRNA | 65056546 | 65060215 | 65056546 | ID=Msa0656020-mRNA-1;Parent=Msa0656020;Name=Msa0656020-mRNA-1;_AED=0.35;_eAED=0.35;_QI=9|1|1|1|1|1|7|230|360 |
| chr4_3 | exon | 65056546 | 65056662 | 65056546 | ID=Msa0656020-mRNA-1:exon:18434;Parent=Msa0656020-mRNA-1 |
| chr4_3 | exon | 65056838 | 65056978 | 65056838 | ID=Msa0656020-mRNA-1:exon:18435;Parent=Msa0656020-mRNA-1 |
| chr4_3 | exon | 65057761 | 65057934 | 65057761 | ID=Msa0656020-mRNA-1:exon:18436;Parent=Msa0656020-mRNA-1 |
| chr4_3 | exon | 65058447 | 65058654 | 65058447 | ID=Msa0656020-mRNA-1:exon:18437;Parent=Msa0656020-mRNA-1 |
| chr4_3 | exon | 65058741 | 65058913 | 65058741 | ID=Msa0656020-mRNA-1:exon:18438;Parent=Msa0656020-mRNA-1 |
| chr4_3 | exon | 65059533 | 65059618 | 65059533 | ID=Msa0656020-mRNA-1:exon:18439;Parent=Msa0656020-mRNA-1 |
| chr4_3 | exon | 65059793 | 65060215 | 65059793 | ID=Msa0656020-mRNA-1:exon:18440;Parent=Msa0656020-mRNA-1 |
| chr4_3 | five_prime_UTR | 65056546 | 65056554 | 65056546 | ID=Msa0656020-mRNA-1:five_prime_utr;Parent=Msa0656020-mRNA-1 |
| chr4_3 | CDS | 65056555 | 65056662 | 65056555 | ID=Msa0656020-mRNA-1:cds;Parent=Msa0656020-mRNA-1 |
| chr4_3 | CDS | 65056838 | 65056978 | 65056838 | ID=Msa0656020-mRNA-1:cds;Parent=Msa0656020-mRNA-1 |
| chr4_3 | CDS | 65057761 | 65057934 | 65057761 | ID=Msa0656020-mRNA-1:cds;Parent=Msa0656020-mRNA-1 |
| chr4_3 | CDS | 65058447 | 65058654 | 65058447 | ID=Msa0656020-mRNA-1:cds;Parent=Msa0656020-mRNA-1 |
| chr4_3 | CDS | 65058741 | 65058913 | 65058741 | ID=Msa0656020-mRNA-1:cds;Parent=Msa0656020-mRNA-1 |
| chr4_3 | CDS | 65059533 | 65059618 | 65059533 | ID=Msa0656020-mRNA-1:cds;Parent=Msa0656020-mRNA-1 |
| chr4_3 | CDS | 65059793 | 65059985 | 65059793 | ID=Msa0656020-mRNA-1:cds;Parent=Msa0656020-mRNA-1 |
| chr4_3 | three_prime_UTR | 65059986 | 65060215 | 65059986 | ID=Msa0656020-mRNA-1:three_prime_utr;Parent=Msa0656020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
