AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0039330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0039330 MtrunA17_Chr1g0203401 93.333 210 9 2 1 209 1 206 8.93e-113 327
Msa0039330 MtrunA17_Chr1g0203401 79.042 167 6 1 211 377 72 209 2.40e-78 239
Msa0039330 MtrunA17_Chr8g0349271 60.227 176 61 2 34 209 31 197 2.20e-61 196
Msa0039330 MtrunA17_Chr8g0349271 66.942 121 40 0 257 377 80 200 2.87e-49 164
Msa0039330 MtrunA17_Chr5g0397781 61.157 121 47 0 257 377 87 207 9.98e-43 148
Msa0039330 MtrunA17_Chr5g0397781 61.345 119 46 0 91 209 86 204 3.43e-41 144
Msa0039330 MtrunA17_Chr8g0386521 58.197 122 51 0 88 209 74 195 1.66e-42 147
Msa0039330 MtrunA17_Chr8g0386521 57.851 121 51 0 257 377 78 198 7.41e-42 145
Msa0039330 MtrunA17_Chr7g0247121 69.231 65 20 0 313 377 34 98 3.18e-24 95.5
Msa0039330 MtrunA17_Chr7g0247121 71.667 60 17 0 148 207 34 93 2.64e-22 90.5
Msa0039330 MtrunA17_Chr1g0173571 35.000 120 78 0 253 372 150 269 1.13e-14 73.6
Msa0039330 MtrunA17_Chr1g0173571 33.607 122 81 0 86 207 148 269 1.09e-13 70.9
Msa0039330 MtrunA17_Chr7g0257771 34.959 123 79 1 85 207 154 275 1.83e-11 64.3
Msa0039330 MtrunA17_Chr7g0257771 34.513 113 74 0 260 372 163 275 5.73e-11 62.8
Msa0039330 MtrunA17_Chr1g0153281 35.577 104 66 1 274 377 513 615 5.13e-11 64.3
Msa0039330 MtrunA17_Chr1g0153281 36.170 94 60 0 109 202 513 606 8.91e-11 63.5
Msa0039330 MtrunA17_Chr8g0376741 38.532 109 64 1 97 205 412 517 8.75e-11 63.5
Msa0039330 MtrunA17_Chr8g0376741 38.532 109 64 1 262 370 412 517 8.75e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0039330 AT5G23750.2 71.429 147 36 2 64 209 57 198 3.17e-61 196
Msa0039330 AT5G23750.2 78.512 121 26 0 257 377 81 201 5.56e-58 187
Msa0039330 AT3G61260.1 63.855 166 53 3 42 206 47 206 6.40e-61 196
Msa0039330 AT3G61260.1 68.595 121 38 0 257 377 92 212 2.43e-50 168
Msa0039330 AT5G23750.3 78.862 123 26 0 87 209 104 226 7.46e-60 193
Msa0039330 AT5G23750.3 78.512 121 26 0 257 377 109 229 8.17e-58 188
Msa0039330 AT5G23750.1 78.862 123 26 0 87 209 77 199 8.83e-60 192
Msa0039330 AT5G23750.1 78.512 121 26 0 257 377 82 202 1.04e-57 187
Msa0039330 AT3G48940.1 61.538 169 58 3 46 209 6 172 1.73e-59 191
Msa0039330 AT3G48940.1 73.554 121 32 0 257 377 55 175 2.52e-55 180
Msa0039330 AT2G45820.1 66.216 148 48 1 59 206 39 184 8.10e-50 166
Msa0039330 AT2G45820.1 70.248 121 36 0 257 377 70 190 1.15e-44 152
Msa0039330 AT1G63295.1 42.748 131 72 1 250 377 21 151 7.10e-22 91.3
Msa0039330 AT1G63295.1 46.364 110 59 0 95 204 31 140 9.00e-21 88.2
Msa0039330 AT1G63295.2 44.167 120 67 0 250 369 61 180 1.74e-21 91.3
Msa0039330 AT1G63295.2 46.364 110 59 0 95 204 71 180 1.27e-20 89.0
Msa0039330 AT4G00670.1 42.157 102 59 0 106 207 16 117 3.77e-19 82.8
Msa0039330 AT4G00670.1 42.157 102 59 0 271 372 16 117 3.77e-19 82.8
Msa0039330 AT2G41870.1 33.884 121 79 1 258 377 153 273 5.68e-12 66.2
Msa0039330 AT2G41870.1 33.913 115 76 0 93 207 153 267 8.41e-12 65.5
Msa0039330 AT3G57540.1 32.258 124 82 1 255 376 172 295 9.21e-12 65.9
Msa0039330 AT3G57540.1 33.043 115 77 0 93 207 175 289 1.91e-11 64.7

Find 88 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAAGACCAAAGAGTTTCTT+TGG 0.217523 1_1:+68865118 None:intergenic
AAAAGACCAAAGAGTTTCTT+TGG 0.217523 1_1:+68867029 None:intergenic
ATTACAAGTGTTGGAGAGTT+AGG 0.248611 1_1:+68869294 None:intergenic
TCTTAGCTGGGTGGGTTTAT+TGG 0.252899 1_1:+68869399 None:intergenic
TCCTCAGCTACATCTTTCTT+TGG 0.259226 1_1:+68869037 None:intergenic
GGAACAACTAGAGAAGAAAA+AGG 0.285933 1_1:-68865287 Msa0039330:CDS
GGAACAACTAGAGAAGAAAA+AGG 0.285933 1_1:-68867198 Msa0039330:CDS
TCGATAGAGCCGCCCTCTTT+TGG 0.297765 1_1:+68865795 None:intergenic
TCGATAGAGCCGCCCTCTTT+TGG 0.297765 1_1:+68867708 None:intergenic
ACTTCATATGCTAACATTAC+AGG 0.305508 1_1:-68865727 Msa0039330:CDS
TCTTTCTAAGAAAGAAGAAT+TGG 0.340874 1_1:+68869192 None:intergenic
ACATCTTTCTTTGGAGCCTC+AGG 0.378728 1_1:+68869046 None:intergenic
ACTGTTCTCCCATGCTGTTA+TGG 0.379485 1_1:+68865434 None:intergenic
ACTGTTCTCCCATGCTGTTA+TGG 0.379485 1_1:+68867345 None:intergenic
ATTCTACTAAAAGTCTTAGC+TGG 0.382428 1_1:+68869386 None:intergenic
GCCTCAGGGAGAGGAGGAGA+AGG 0.390077 1_1:+68869061 None:intergenic
ACAGCTCCAAAGAAACTCTT+TGG 0.398417 1_1:-68865124 Msa0039330:CDS
ACAGCTCCAAAGAAACTCTT+TGG 0.398417 1_1:-68867035 Msa0039330:intron
AGTTGGCACAGCGCACCAAT+AGG 0.402374 1_1:+68869436 None:intergenic
AAGAAAGATATTACAAGTGT+TGG 0.420015 1_1:+68869285 None:intergenic
AAGAGGTAGCTGCAAAATAC+AGG 0.425184 1_1:-68865156 Msa0039330:CDS
AAGAGGTAGCTGCAAAATAC+AGG 0.425184 1_1:-68867067 Msa0039330:CDS
CTGAGCTATGACAAGAGCTT+TGG 0.429684 1_1:+68868958 None:intergenic
GCTGCAAAATACAGGGCAAC+TGG 0.430234 1_1:-68865148 Msa0039330:CDS
GCTGCAAAATACAGGGCAAC+TGG 0.430234 1_1:-68867059 Msa0039330:CDS
TTCTTTGGAGCCTCAGGGAG+AGG 0.442969 1_1:+68869052 None:intergenic
TTACAAGTGTTGGAGAGTTA+GGG 0.454246 1_1:+68869295 None:intergenic
AATAAGTTGTCTGTCCCTAT+TGG 0.457363 1_1:-68869451 None:intergenic
TTAGCATATGAAGTGCATAA+AGG 0.463045 1_1:+68865736 None:intergenic
AGCTGGGTGGGTTTATTGGT+AGG 0.476393 1_1:+68869403 None:intergenic
TCAGTTGAAGCAGGTGGTGG+TGG 0.488620 1_1:+68869100 None:intergenic
GCTTTGGAGTCATCAACAAC+AGG 0.488845 1_1:+68868974 None:intergenic
GTTGAAGCAGGTGGTGGTGG+AGG 0.497469 1_1:+68869103 None:intergenic
GTTGGCACAGCGCACCAATA+GGG 0.504102 1_1:+68869437 None:intergenic
TATTATAGTTGTAGAATGAA+AGG 0.511225 1_1:+68869328 None:intergenic
ATTATAGTTGTAGAATGAAA+GGG 0.515536 1_1:+68869329 None:intergenic
CAAGGCAGCTGAAGAAAAGA+AGG 0.521517 1_1:-68865221 Msa0039330:CDS
CAAGGCAGCTGAAGAAAAGA+AGG 0.521517 1_1:-68867132 Msa0039330:CDS
TCATCAACAACAGGAGGAGG+AGG 0.524276 1_1:+68868983 None:intergenic
TTCTACTAAAAGTCTTAGCT+GGG 0.524449 1_1:+68869387 None:intergenic
TCAACAACAGGAGGAGGAGG+AGG 0.529147 1_1:+68868986 None:intergenic
CCTCAGGGAGAGGAGGAGAA+GGG 0.530917 1_1:+68869062 None:intergenic
TGGTAGGTACTCTTGTGAGT+TGG 0.531008 1_1:+68869419 None:intergenic
GGCTGTCACTAATCAAAGCA+TGG 0.531510 1_1:-68865647 Msa0039330:CDS
GGCTGTCACTAATCAAAGCA+TGG 0.531510 1_1:-68867559 Msa0039330:CDS
CTCAGGGAGAGGAGGAGAAG+GGG 0.532056 1_1:+68869063 None:intergenic
GTCTCAGTTGAAGCAGGTGG+TGG 0.537604 1_1:+68869097 None:intergenic
GGAGGAGGATTATTATCTTG+TGG 0.541469 1_1:+68869001 None:intergenic
CAAGAGTTGCAACAGAAAAG+AGG 0.549164 1_1:-68865668 Msa0039330:CDS
CAAGAGTTGCAACAGAAAAG+AGG 0.549164 1_1:-68867580 Msa0039330:CDS
ACTAAAAGTCTTAGCTGGGT+GGG 0.558329 1_1:+68869391 None:intergenic
TTTGGAGCCTCAGGGAGAGG+AGG 0.558769 1_1:+68869055 None:intergenic
CATCTTTCTTTGGAGCCTCA+GGG 0.563937 1_1:+68869047 None:intergenic
TGCTGAAGAGAAACCAAAAG+AGG 0.570519 1_1:-68865808 Msa0039330:CDS
TGCTGAAGAGAAACCAAAAG+AGG 0.570519 1_1:-68867721 Msa0039330:CDS
GAGTCATCAACAACAGGAGG+AGG 0.575285 1_1:+68868980 None:intergenic
TCCAAAGAAAGATGTAGCTG+AGG 0.578942 1_1:-68869038 Msa0039330:CDS
GCTATGATTGAGGCAAAGAA+AGG 0.579579 1_1:-68865199 Msa0039330:CDS
GCTATGATTGAGGCAAAGAA+AGG 0.579579 1_1:-68867110 Msa0039330:CDS
AACTTTCATCCATAACAGCA+TGG 0.579782 1_1:-68865443 Msa0039330:CDS
AACTTTCATCCATAACAGCA+TGG 0.579782 1_1:-68867354 Msa0039330:CDS
TACTAAAAGTCTTAGCTGGG+TGG 0.586125 1_1:+68869390 None:intergenic
AGAATTACTCAAAGCAGAAG+AGG 0.586549 1_1:-68865173 Msa0039330:CDS
AGAATTACTCAAAGCAGAAG+AGG 0.586549 1_1:-68867084 Msa0039330:CDS
CAAAATAGCAGCACTTCACA+AGG 0.592299 1_1:-68865239 Msa0039330:CDS
CAAAATAGCAGCACTTCACA+AGG 0.592299 1_1:-68867150 Msa0039330:CDS
AAGTGTTGGAGAGTTAGGGT+TGG 0.592661 1_1:+68869299 None:intergenic
AGAAAAGAAGGCTATGATTG+AGG 0.593916 1_1:-68865209 Msa0039330:CDS
AGAAAAGAAGGCTATGATTG+AGG 0.593916 1_1:-68867120 Msa0039330:CDS
GTAGTCGTCTCAGTTGAAGC+AGG 0.595047 1_1:+68869091 None:intergenic
AGCTGAATTGAGAAAACTTG+AGG 0.599321 1_1:-68865394 Msa0039330:intron
AGCTGAATTGAGAAAACTTG+AGG 0.599321 1_1:-68867305 Msa0039330:intron
GCTGTCACTAATCAAAGCAT+GGG 0.606143 1_1:-68865646 Msa0039330:CDS
GCTGTCACTAATCAAAGCAT+GGG 0.606143 1_1:-68867558 Msa0039330:CDS
ACTTTCATCCATAACAGCAT+GGG 0.613867 1_1:-68865442 Msa0039330:CDS
ACTTTCATCCATAACAGCAT+GGG 0.613867 1_1:-68867353 Msa0039330:CDS
CCCTTCTCCTCCTCTCCCTG+AGG 0.617803 1_1:-68869062 Msa0039330:CDS
AGAGGTAGCTGCAAAATACA+GGG 0.626640 1_1:-68865155 Msa0039330:CDS
AGAGGTAGCTGCAAAATACA+GGG 0.626640 1_1:-68867066 Msa0039330:CDS
GTCGTCTCAGTTGAAGCAGG+TGG 0.640903 1_1:+68869094 None:intergenic
GCTGAAGAGAAACCAAAAGA+GGG 0.649888 1_1:-68865807 Msa0039330:CDS
GCTGAAGAGAAACCAAAAGA+GGG 0.649888 1_1:-68867720 Msa0039330:CDS
TTGGAGTCATCAACAACAGG+AGG 0.656015 1_1:+68868977 None:intergenic
GAAGAGAAACCAAAAGAGGG+CGG 0.689508 1_1:-68865804 Msa0039330:CDS
GAAGAGAAACCAAAAGAGGG+CGG 0.689508 1_1:-68867717 Msa0039330:CDS
CAATGACAAGATATATACCA+CGG 0.717648 1_1:+68865772 None:intergenic
GAGGGCGGCTCTATCGACCG+TGG 0.735676 1_1:-68865789 Msa0039330:CDS
GAGGGCGGCTCTATCGACCG+TGG 0.735676 1_1:-68867702 Msa0039330:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTGTTTAAATTTTATTTTAT+TGG - chr1_1:68865662-68865681 Msa0039330:CDS 10.0%
!!! ACAATTTTATTATAGAAAAA+AGG - chr1_1:68865696-68865715 Msa0039330:CDS 10.0%
!! TTTGAAAAAAATCAATTATA+GGG + chr1_1:68865835-68865854 None:intergenic 10.0%
!!! AAATTATTACTTTTAATAGA+AGG - chr1_1:68866073-68866092 Msa0039330:intron 10.0%
!!! AATTATTACTTTTAATAGAA+GGG - chr1_1:68866074-68866093 Msa0039330:intron 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_1:68866165-68866184 Msa0039330:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_1:68866165-68866184 Msa0039330:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_1:68866165-68866184 Msa0039330:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_1:68866165-68866184 Msa0039330:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_1:68866165-68866184 Msa0039330:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_1:68866165-68866184 Msa0039330:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_1:68866165-68866184 Msa0039330:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_1:68866165-68866184 Msa0039330:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_1:68866165-68866184 Msa0039330:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_1:68866165-68866184 Msa0039330:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_1:68866165-68866184 Msa0039330:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_1:68866165-68866184 Msa0039330:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_1:68866165-68866184 Msa0039330:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_1:68866165-68866184 Msa0039330:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_1:68866165-68866184 Msa0039330:intron 100.0%
! GGCGGGGGGGGGGGGGGGGG+GGG - chr1_1:68868090-68868109 Msa0039330:intron 100.0%
! GCGGGGGGGGGGGGGGGGGG+GGG - chr1_1:68868091-68868110 Msa0039330:intron 100.0%
! CGGGGGGGGGGGGGGGGGGG+GGG - chr1_1:68868092-68868111 Msa0039330:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_1:68866165-68866184 Msa0039330:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_1:68866165-68866184 Msa0039330:intron 100.0%
!!! TATGTTTTATCTATCTATTT+TGG - chr1_1:68865736-68865755 Msa0039330:CDS 15.0%
!!! CTTTGAAAAAAATCAATTAT+AGG + chr1_1:68865836-68865855 None:intergenic 15.0%
!!! ATCAATACATATTTTTTATC+TGG - chr1_1:68865884-68865903 Msa0039330:intron 15.0%
!!! TTTAAATTTGTGCATATTTT+TGG + chr1_1:68866562-68866581 None:intergenic 15.0%
!! TGACTTAAAAACAAATATTA+CGG + chr1_1:68866739-68866758 None:intergenic 15.0%
!! ATATAATTCTGTTGTTAATT+TGG - chr1_1:68866789-68866808 Msa0039330:intron 15.0%
!!! TTTAAATTTGTGCATATTTT+TGG + chr1_1:68866562-68866581 None:intergenic 15.0%
!! TGACTTAAAAACAAATATTA+CGG + chr1_1:68866739-68866758 None:intergenic 15.0%
!! ATTATAGTTGTAGAATGAAA+GGG + chr1_1:68865231-68865250 None:intergenic 20.0%
!! TATTATAGTTGTAGAATGAA+AGG + chr1_1:68865232-68865251 None:intergenic 20.0%
!! CTATAATAAAATTGTTTCCT+TGG + chr1_1:68865691-68865710 None:intergenic 20.0%
!!! TCTATTTTGGTTTGTTTTAT+TGG - chr1_1:68865749-68865768 Msa0039330:CDS 20.0%
!! TAATAGCAAAATTGAATTGA+AGG - chr1_1:68865983-68866002 Msa0039330:intron 20.0%
!! TTAATTGATTAGATTGTAGT+TGG + chr1_1:68866406-68866425 None:intergenic 20.0%
!! AATCTAATCAATTAAGTGTA+TGG - chr1_1:68866411-68866430 Msa0039330:intron 20.0%
!!! TAATGCTTAATGTGTATTTT+TGG - chr1_1:68867071-68867090 Msa0039330:CDS 20.0%
!! TTGTATATATCCATTACTTT+GGG - chr1_1:68867689-68867708 Msa0039330:intron 20.0%
!! CAAATTGAATGAGAATTAAA+TGG + chr1_1:68867723-68867742 None:intergenic 20.0%
!! AAAATGAAGATATCACAAAA+AGG - chr1_1:68868069-68868088 Msa0039330:intron 20.0%
!! TTAATTGATTAGATTGTAGT+TGG + chr1_1:68866406-68866425 None:intergenic 20.0%
!! AATCTAATCAATTAAGTGTA+TGG - chr1_1:68866411-68866430 Msa0039330:intron 20.0%
!!! GATATAATTCTGTTGTTATT+TGG - chr1_1:68868702-68868721 Msa0039330:intron 20.0%
! AAGAAAGATATTACAAGTGT+TGG + chr1_1:68865275-68865294 None:intergenic 25.0%
!!! AAGAATTGGAACAACTTTTT+TGG + chr1_1:68865354-68865373 None:intergenic 25.0%
!! TCTTTCTAAGAAAGAAGAAT+TGG + chr1_1:68865368-68865387 None:intergenic 25.0%
!!! GATTCAGATTCTATCTTTTT+TGG + chr1_1:68865424-68865443 None:intergenic 25.0%
!!! TTTTATTTTATTGGTTGCCA+AGG - chr1_1:68865671-68865690 Msa0039330:CDS 25.0%
! TTATAGGGAAAATTTGAAGA+TGG + chr1_1:68865820-68865839 None:intergenic 25.0%
! AAACATGCATTAAGATTCTA+GGG - chr1_1:68866511-68866530 Msa0039330:intron 25.0%
!!! AAAACGGTAAAGGTTATTTT+GGG + chr1_1:68866695-68866714 None:intergenic 25.0%
! AAACAAATATTACGGATGAA+TGG + chr1_1:68866731-68866750 None:intergenic 25.0%
! TATATCAATGTGATTATACG+CGG + chr1_1:68866774-68866793 None:intergenic 25.0%
! AATACACATTAAGCATTAGA+TGG + chr1_1:68867069-68867088 None:intergenic 25.0%
! TACTAATCTCCTTAGAATTA+TGG + chr1_1:68867134-68867153 None:intergenic 25.0%
! ACATTGAATGTGACAAAATA+TGG - chr1_1:68867301-68867320 Msa0039330:intron 25.0%
! CATTGAATGTGACAAAATAT+GGG - chr1_1:68867302-68867321 Msa0039330:intron 25.0%
! ATTGAATGTGACAAAATATG+GGG - chr1_1:68867303-68867322 Msa0039330:intron 25.0%
!!! TTAATTACTTTTCACTGTGT+AGG - chr1_1:68867338-68867357 Msa0039330:CDS 25.0%
! GTTGTATATATCCATTACTT+TGG - chr1_1:68867688-68867707 Msa0039330:intron 25.0%
!!! TATTCACAAAGTGTTTTCAT+TGG + chr1_1:68867815-68867834 None:intergenic 25.0%
! ATGTGTAATTATAATGTCTC+AGG + chr1_1:68867860-68867879 None:intergenic 25.0%
! ACATAATCAATAGTTGTTGA+AGG - chr1_1:68867876-68867895 Msa0039330:intron 25.0%
! AAACATGCATTAAGATTCTA+GGG - chr1_1:68866511-68866530 Msa0039330:intron 25.0%
! AAACAAATATTACGGATGAA+TGG + chr1_1:68866731-68866750 None:intergenic 25.0%
! TATATCAATGTGATTATACG+CGG + chr1_1:68866774-68866793 None:intergenic 25.0%
! AATACACATTAAGCATTAGA+TGG + chr1_1:68867069-68867088 None:intergenic 25.0%
!! CTAATGCTTAATGTGTATTT+TGG - chr1_1:68867070-68867089 Msa0039330:CDS 25.0%
! TACTAATCTCCTTAGAATTA+TGG + chr1_1:68867134-68867153 None:intergenic 25.0%
! ACATTGAATGTGACAAAATA+TGG - chr1_1:68867301-68867320 Msa0039330:intron 25.0%
! CATTGAATGTGACAAAATAT+GGG - chr1_1:68867302-68867321 Msa0039330:intron 25.0%
! ATTGAATGTGACAAAATATG+GGG - chr1_1:68867303-68867322 Msa0039330:intron 25.0%
!!! TTAATTACTTTTCACTGTGT+AGG - chr1_1:68867338-68867357 Msa0039330:CDS 25.0%
TTCTACTAAAAGTCTTAGCT+GGG + chr1_1:68865173-68865192 None:intergenic 30.0%
ATTCTACTAAAAGTCTTAGC+TGG + chr1_1:68865174-68865193 None:intergenic 30.0%
!!! TTTGGTTTGTTTTATTGGAC+TGG - chr1_1:68865754-68865773 Msa0039330:CDS 30.0%
!!! TGTTTTATTGGACTGGTATA+AGG - chr1_1:68865761-68865780 Msa0039330:CDS 30.0%
ATATAAGCGAAATAGTTGAG+AGG - chr1_1:68865927-68865946 Msa0039330:intron 30.0%
GGAAACTGAGAAAAATACAA+GGG + chr1_1:68866306-68866325 None:intergenic 30.0%
TGGAAACTGAGAAAAATACA+AGG + chr1_1:68866307-68866326 None:intergenic 30.0%
ATCAGAAAAATTCCAGGAAA+TGG + chr1_1:68866327-68866346 None:intergenic 30.0%
ACAATCATCAGAAAAATTCC+AGG + chr1_1:68866333-68866352 None:intergenic 30.0%
TTTCTGATGATTGTTCTCTT+AGG - chr1_1:68866339-68866358 Msa0039330:intron 30.0%
TTGATTAGATTGTAGTTGGA+TGG + chr1_1:68866402-68866421 None:intergenic 30.0%
CTAGAATCTTAATGCATGTT+TGG + chr1_1:68866512-68866531 None:intergenic 30.0%
CAAACATGCATTAAGATTCT+AGG - chr1_1:68866510-68866529 Msa0039330:intron 30.0%
AGAAAAGAAACACATTAGCT+TGG - chr1_1:68866581-68866600 Msa0039330:intron 30.0%
! GAAAACGGTAAAGGTTATTT+TGG + chr1_1:68866696-68866715 None:intergenic 30.0%
CTAAAACATGAAAACGGTAA+AGG + chr1_1:68866705-68866724 None:intergenic 30.0%
! CTTTACCGTTTTCATGTTTT+AGG - chr1_1:68866703-68866722 Msa0039330:intron 30.0%
TGGTTCCTAAAACATGAAAA+CGG + chr1_1:68866711-68866730 None:intergenic 30.0%
CAATGACAAGATATATACCA+CGG + chr1_1:68866875-68866894 None:intergenic 30.0%
TAGCATATGAAGTGCATAAA+GGG + chr1_1:68866911-68866930 None:intergenic 30.0%
TTAGCATATGAAGTGCATAA+AGG + chr1_1:68866912-68866931 None:intergenic 30.0%
ACTTCATATGCTAACATTAC+AGG - chr1_1:68866918-68866937 Msa0039330:intron 30.0%
TATGGTGACTCAATGTAATA+AGG + chr1_1:68867116-68867135 None:intergenic 30.0%
ATTGAGTCACCATAATTCTA+AGG - chr1_1:68867122-68867141 Msa0039330:CDS 30.0%
TTGAATGTGACAAAATATGG+GGG - chr1_1:68867304-68867323 Msa0039330:intron 30.0%
GAACAACTAGAGAAGAAAAA+GGG - chr1_1:68867360-68867379 Msa0039330:CDS 30.0%
AAAAGACCAAAGAGTTTCTT+TGG + chr1_1:68867531-68867550 None:intergenic 30.0%
! TGTTTTCTTCATGTGTGATT+TGG - chr1_1:68867610-68867629 Msa0039330:intron 30.0%
! GGTTTTTATTCCCAAAGTAA+TGG + chr1_1:68867702-68867721 None:intergenic 30.0%
GTAGAGTATAGTTAGATCAA+TGG + chr1_1:68867929-68867948 None:intergenic 30.0%
ATACTCTACATCCTATAAAC+TGG - chr1_1:68867940-68867959 Msa0039330:intron 30.0%
AAGTTTACCTACCAGTTTAT+AGG + chr1_1:68867954-68867973 None:intergenic 30.0%
ATGAAGATATCACAAAAAGG+CGG - chr1_1:68868072-68868091 Msa0039330:intron 30.0%
GGAAACTGAGAAAAATACAA+GGG + chr1_1:68866306-68866325 None:intergenic 30.0%
TGGAAACTGAGAAAAATACA+AGG + chr1_1:68866307-68866326 None:intergenic 30.0%
ATCAGAAAAATTCCAGGAAA+TGG + chr1_1:68866327-68866346 None:intergenic 30.0%
ACAATCATCAGAAAAATTCC+AGG + chr1_1:68866333-68866352 None:intergenic 30.0%
TTTCTGATGATTGTTCTCTT+AGG - chr1_1:68866339-68866358 Msa0039330:intron 30.0%
TTGATTAGATTGTAGTTGGA+TGG + chr1_1:68866402-68866421 None:intergenic 30.0%
CTAGAATCTTAATGCATGTT+TGG + chr1_1:68866512-68866531 None:intergenic 30.0%
CAAACATGCATTAAGATTCT+AGG - chr1_1:68866510-68866529 Msa0039330:intron 30.0%
AGAAAAGAAACACATTAGCT+TGG - chr1_1:68866581-68866600 Msa0039330:intron 30.0%
! GAAAACGGTAAAGGTTATTT+TGG + chr1_1:68866696-68866715 None:intergenic 30.0%
CTAAAACATGAAAACGGTAA+AGG + chr1_1:68866705-68866724 None:intergenic 30.0%
! CTTTACCGTTTTCATGTTTT+AGG - chr1_1:68866703-68866722 Msa0039330:intron 30.0%
TGGTTCCTAAAACATGAAAA+CGG + chr1_1:68866711-68866730 None:intergenic 30.0%
CAATGACAAGATATATACCA+CGG + chr1_1:68866875-68866894 None:intergenic 30.0%
TTAGCATATGAAGTGCATAA+AGG + chr1_1:68866912-68866931 None:intergenic 30.0%
ACTTCATATGCTAACATTAC+AGG - chr1_1:68866918-68866937 Msa0039330:intron 30.0%
TATGGTGACTCAATGTAATA+AGG + chr1_1:68867116-68867135 None:intergenic 30.0%
ATTGAGTCACCATAATTCTA+AGG - chr1_1:68867122-68867141 Msa0039330:CDS 30.0%
TTGAATGTGACAAAATATGG+GGG - chr1_1:68867304-68867323 Msa0039330:intron 30.0%
GAACAACTAGAGAAGAAAAA+GGG - chr1_1:68867360-68867379 Msa0039330:CDS 30.0%
AAAAGACCAAAGAGTTTCTT+TGG + chr1_1:68867531-68867550 None:intergenic 30.0%
!! TTACAAGTGTTGGAGAGTTA+GGG + chr1_1:68865265-68865284 None:intergenic 35.0%
!! ATTACAAGTGTTGGAGAGTT+AGG + chr1_1:68865266-68865285 None:intergenic 35.0%
! TTTTCTCAGTTTCCATTTCC+TGG - chr1_1:68866312-68866331 Msa0039330:intron 35.0%
GATTGTAGTTGGATGGTAAT+TGG + chr1_1:68866395-68866414 None:intergenic 35.0%
GGGTAGGTTTAAAGAAATCA+AGG + chr1_1:68866477-68866496 None:intergenic 35.0%
TTAATGCATGTTTGGATGCA+CGG + chr1_1:68866504-68866523 None:intergenic 35.0%
TCACTTATAAACTCGTGTTC+AGG + chr1_1:68866627-68866646 None:intergenic 35.0%
!! ACTGATAAAACCGGTTTGTA+AGG + chr1_1:68866662-68866681 None:intergenic 35.0%
CGAACTCAAACTGATAAAAC+CGG + chr1_1:68866671-68866690 None:intergenic 35.0%
!! CGGTTTTATCAGTTTGAGTT+CGG - chr1_1:68866669-68866688 Msa0039330:intron 35.0%
AACTTTCATCCATAACAGCA+TGG - chr1_1:68867203-68867222 Msa0039330:intron 35.0%
ACTTTCATCCATAACAGCAT+GGG - chr1_1:68867204-68867223 Msa0039330:intron 35.0%
AGCTGAATTGAGAAAACTTG+AGG - chr1_1:68867252-68867271 Msa0039330:intron 35.0%
GGAACAACTAGAGAAGAAAA+AGG - chr1_1:68867359-68867378 Msa0039330:CDS 35.0%
AGAAAAGAAGGCTATGATTG+AGG - chr1_1:68867437-68867456 Msa0039330:intron 35.0%
AGAATTACTCAAAGCAGAAG+AGG - chr1_1:68867473-68867492 Msa0039330:intron 35.0%
TGCTACAATGTTCAAGATTG+TGG - chr1_1:68867555-68867574 Msa0039330:CDS 35.0%
ACTCACTCATTCTTAGATGT+TGG - chr1_1:68867775-68867794 Msa0039330:intron 35.0%
TCTACATCCTATAAACTGGT+AGG - chr1_1:68867944-68867963 Msa0039330:intron 35.0%
TGAAGATATCACAAAAAGGC+GGG - chr1_1:68868073-68868092 Msa0039330:intron 35.0%
! TTTTCTCAGTTTCCATTTCC+TGG - chr1_1:68866312-68866331 Msa0039330:intron 35.0%
GATTGTAGTTGGATGGTAAT+TGG + chr1_1:68866395-68866414 None:intergenic 35.0%
GGGTAGGTTTAAAGAAATCA+AGG + chr1_1:68866477-68866496 None:intergenic 35.0%
TTAATGCATGTTTGGATGCA+CGG + chr1_1:68866504-68866523 None:intergenic 35.0%
TCACTTATAAACTCGTGTTC+AGG + chr1_1:68866627-68866646 None:intergenic 35.0%
!! ACTGATAAAACCGGTTTGTA+AGG + chr1_1:68866662-68866681 None:intergenic 35.0%
CGAACTCAAACTGATAAAAC+CGG + chr1_1:68866671-68866690 None:intergenic 35.0%
!! CGGTTTTATCAGTTTGAGTT+CGG - chr1_1:68866669-68866688 Msa0039330:intron 35.0%
AACTTTCATCCATAACAGCA+TGG - chr1_1:68867203-68867222 Msa0039330:intron 35.0%
ACTTTCATCCATAACAGCAT+GGG - chr1_1:68867204-68867223 Msa0039330:intron 35.0%
AGCTGAATTGAGAAAACTTG+AGG - chr1_1:68867252-68867271 Msa0039330:intron 35.0%
GGAACAACTAGAGAAGAAAA+AGG - chr1_1:68867359-68867378 Msa0039330:CDS 35.0%
AGAAAAGAAGGCTATGATTG+AGG - chr1_1:68867437-68867456 Msa0039330:intron 35.0%
AGAATTACTCAAAGCAGAAG+AGG - chr1_1:68867473-68867492 Msa0039330:intron 35.0%
ACTAAAAGTCTTAGCTGGGT+GGG + chr1_1:68865169-68865188 None:intergenic 40.0%
TACTAAAAGTCTTAGCTGGG+TGG + chr1_1:68865170-68865189 None:intergenic 40.0%
TCCAAAGAAAGATGTAGCTG+AGG - chr1_1:68865519-68865538 Msa0039330:intron 40.0%
TCCTCAGCTACATCTTTCTT+TGG + chr1_1:68865523-68865542 None:intergenic 40.0%
GGAGGAGGATTATTATCTTG+TGG + chr1_1:68865559-68865578 None:intergenic 40.0%
TGTCCTATTGAGTTTCCTGA+AGG - chr1_1:68866144-68866163 Msa0039330:intron 40.0%
GTCCTATTGAGTTTCCTGAA+GGG - chr1_1:68866145-68866164 Msa0039330:intron 40.0%
TCCTATTGAGTTTCCTGAAG+GGG - chr1_1:68866146-68866165 Msa0039330:intron 40.0%
ATGTTTGGATGCACGGTATT+GGG + chr1_1:68866497-68866516 None:intergenic 40.0%
!! TGGTCTTGTAATCAGTGCAT+TGG - chr1_1:68866601-68866620 Msa0039330:intron 40.0%
!! TAAAACCGGTTTGTAAGGTG+AGG + chr1_1:68866657-68866676 None:intergenic 40.0%
TGCTGAAGAGAAACCAAAAG+AGG - chr1_1:68866836-68866855 Msa0039330:intron 40.0%
GCTGAAGAGAAACCAAAAGA+GGG - chr1_1:68866837-68866856 Msa0039330:intron 40.0%
CAAGAGTTGCAACAGAAAAG+AGG - chr1_1:68866977-68866996 Msa0039330:intron 40.0%
GCTGTCACTAATCAAAGCAT+GGG - chr1_1:68866999-68867018 Msa0039330:intron 40.0%
CAAAATAGCAGCACTTCACA+AGG - chr1_1:68867407-68867426 Msa0039330:intron 40.0%
GCTATGATTGAGGCAAAGAA+AGG - chr1_1:68867447-68867466 Msa0039330:intron 40.0%
AAGAGGTAGCTGCAAAATAC+AGG - chr1_1:68867490-68867509 Msa0039330:intron 40.0%
AGAGGTAGCTGCAAAATACA+GGG - chr1_1:68867491-68867510 Msa0039330:intron 40.0%
ACAGCTCCAAAGAAACTCTT+TGG - chr1_1:68867522-68867541 Msa0039330:intron 40.0%
GAGTCAGTGGTCTAATACAA+AGG + chr1_1:68867759-68867778 None:intergenic 40.0%
TCTAAGAATGAGTGAGTCAG+TGG + chr1_1:68867772-68867791 None:intergenic 40.0%
TCCATGTTTAGAGGGGAAAA+GGG + chr1_1:68868002-68868021 None:intergenic 40.0%
! ATAGCTGACTTCCAAAGGTA+AGG + chr1_1:68868030-68868049 None:intergenic 40.0%
! ACCTTTGGAAGTCAGCTATA+TGG - chr1_1:68868031-68868050 Msa0039330:intron 40.0%
! ACCATATAGCTGACTTCCAA+AGG + chr1_1:68868035-68868054 None:intergenic 40.0%
TTTGGAAGTCAGCTATATGG+TGG - chr1_1:68868034-68868053 Msa0039330:intron 40.0%
GAAGATATCACAAAAAGGCG+GGG - chr1_1:68868074-68868093 Msa0039330:intron 40.0%
AAGATATCACAAAAAGGCGG+GGG - chr1_1:68868075-68868094 Msa0039330:intron 40.0%
ATGTTTGGATGCACGGTATT+GGG + chr1_1:68866497-68866516 None:intergenic 40.0%
!! TGGTCTTGTAATCAGTGCAT+TGG - chr1_1:68866601-68866620 Msa0039330:intron 40.0%
!! TAAAACCGGTTTGTAAGGTG+AGG + chr1_1:68866657-68866676 None:intergenic 40.0%
TGCTGAAGAGAAACCAAAAG+AGG - chr1_1:68866836-68866855 Msa0039330:intron 40.0%
GCTGAAGAGAAACCAAAAGA+GGG - chr1_1:68866837-68866856 Msa0039330:intron 40.0%
CAAGAGTTGCAACAGAAAAG+AGG - chr1_1:68866977-68866996 Msa0039330:intron 40.0%
GCTGTCACTAATCAAAGCAT+GGG - chr1_1:68866999-68867018 Msa0039330:intron 40.0%
CAAAATAGCAGCACTTCACA+AGG - chr1_1:68867407-68867426 Msa0039330:intron 40.0%
GCTATGATTGAGGCAAAGAA+AGG - chr1_1:68867447-68867466 Msa0039330:intron 40.0%
AAGAGGTAGCTGCAAAATAC+AGG - chr1_1:68867490-68867509 Msa0039330:intron 40.0%
AGAGGTAGCTGCAAAATACA+GGG - chr1_1:68867491-68867510 Msa0039330:intron 40.0%
ACAGCTCCAAAGAAACTCTT+TGG - chr1_1:68867522-68867541 Msa0039330:intron 40.0%
TGGTAGGTACTCTTGTGAGT+TGG + chr1_1:68865141-68865160 None:intergenic 45.0%
! TCTTAGCTGGGTGGGTTTAT+TGG + chr1_1:68865161-68865180 None:intergenic 45.0%
!! AAGTGTTGGAGAGTTAGGGT+TGG + chr1_1:68865261-68865280 None:intergenic 45.0%
!! CATCTTTCTTTGGAGCCTCA+GGG + chr1_1:68865513-68865532 None:intergenic 45.0%
!! ACATCTTTCTTTGGAGCCTC+AGG + chr1_1:68865514-68865533 None:intergenic 45.0%
TTGGAGTCATCAACAACAGG+AGG + chr1_1:68865583-68865602 None:intergenic 45.0%
!! GCTTTGGAGTCATCAACAAC+AGG + chr1_1:68865586-68865605 None:intergenic 45.0%
CTGAGCTATGACAAGAGCTT+TGG + chr1_1:68865602-68865621 None:intergenic 45.0%
CCTATTGAGTTTCCTGAAGG+GGG - chr1_1:68866147-68866166 Msa0039330:intron 45.0%
CTATTGAGTTTCCTGAAGGG+GGG - chr1_1:68866148-68866167 Msa0039330:intron 45.0%
TATTGAGTTTCCTGAAGGGG+GGG - chr1_1:68866149-68866168 Msa0039330:intron 45.0%
CATGTTTGGATGCACGGTAT+TGG + chr1_1:68866498-68866517 None:intergenic 45.0%
CGAATCCTCACCTTACAAAC+CGG - chr1_1:68866649-68866668 Msa0039330:intron 45.0%
ATTATACGCGGTCGATGTGA+AGG + chr1_1:68866762-68866781 None:intergenic 45.0%
GAAGAGAAACCAAAAGAGGG+CGG - chr1_1:68866840-68866859 Msa0039330:intron 45.0%
GGCTGTCACTAATCAAAGCA+TGG - chr1_1:68866998-68867017 Msa0039330:intron 45.0%
ACTGTTCTCCCATGCTGTTA+TGG + chr1_1:68867215-68867234 None:intergenic 45.0%
CAAGGCAGCTGAAGAAAAGA+AGG - chr1_1:68867425-68867444 Msa0039330:intron 45.0%
GAAAAGGGTGGACAGAGAAA+TGG + chr1_1:68867987-68868006 None:intergenic 45.0%
ATGTTTAGAGGGGAAAAGGG+TGG + chr1_1:68867999-68868018 None:intergenic 45.0%
! ACCCTTTTCCCCTCTAAACA+TGG - chr1_1:68867998-68868017 Msa0039330:intron 45.0%
GTCCATGTTTAGAGGGGAAA+AGG + chr1_1:68868003-68868022 None:intergenic 45.0%
AGGTGAGGTCCATGTTTAGA+GGG + chr1_1:68868010-68868029 None:intergenic 45.0%
AAGGTGAGGTCCATGTTTAG+AGG + chr1_1:68868011-68868030 None:intergenic 45.0%
TGACTTCCAAAGGTAAGGTG+AGG + chr1_1:68868025-68868044 None:intergenic 45.0%
AGATATCACAAAAAGGCGGG+GGG - chr1_1:68868076-68868095 Msa0039330:intron 45.0%
CATGTTTGGATGCACGGTAT+TGG + chr1_1:68866498-68866517 None:intergenic 45.0%
CGAATCCTCACCTTACAAAC+CGG - chr1_1:68866649-68866668 Msa0039330:intron 45.0%
ATTATACGCGGTCGATGTGA+AGG + chr1_1:68866762-68866781 None:intergenic 45.0%
GAAGAGAAACCAAAAGAGGG+CGG - chr1_1:68866840-68866859 Msa0039330:intron 45.0%
GGCTGTCACTAATCAAAGCA+TGG - chr1_1:68866998-68867017 Msa0039330:intron 45.0%
ACTGTTCTCCCATGCTGTTA+TGG + chr1_1:68867215-68867234 None:intergenic 45.0%
CAAGGCAGCTGAAGAAAAGA+AGG - chr1_1:68867425-68867444 Msa0039330:intron 45.0%
! AGCTGGGTGGGTTTATTGGT+AGG + chr1_1:68865157-68865176 None:intergenic 50.0%
GTAGTCGTCTCAGTTGAAGC+AGG + chr1_1:68865469-68865488 None:intergenic 50.0%
TCATCAACAACAGGAGGAGG+AGG + chr1_1:68865577-68865596 None:intergenic 50.0%
GAGTCATCAACAACAGGAGG+AGG + chr1_1:68865580-68865599 None:intergenic 50.0%
CCCCCTTCAGGAAACTCAAT+AGG + chr1_1:68866150-68866169 None:intergenic 50.0%
ATTGAGTTTCCTGAAGGGGG+GGG - chr1_1:68866150-68866169 Msa0039330:intron 50.0%
! TTGGATGCACGGTATTGGGT+AGG + chr1_1:68866493-68866512 None:intergenic 50.0%
GCTGCAAAATACAGGGCAAC+TGG - chr1_1:68867498-68867517 Msa0039330:intron 50.0%
GGTGAGGTCCATGTTTAGAG+GGG + chr1_1:68868009-68868028 None:intergenic 50.0%
CATGGACCTCACCTTACCTT+TGG - chr1_1:68868016-68868035 Msa0039330:intron 50.0%
GATATCACAAAAAGGCGGGG+GGG - chr1_1:68868077-68868096 Msa0039330:intron 50.0%
ATATCACAAAAAGGCGGGGG+GGG - chr1_1:68868078-68868097 Msa0039330:intron 50.0%
! TTGGATGCACGGTATTGGGT+AGG + chr1_1:68866493-68866512 None:intergenic 50.0%
GCTGCAAAATACAGGGCAAC+TGG - chr1_1:68867498-68867517 Msa0039330:intron 50.0%
GTTGGCACAGCGCACCAATA+GGG + chr1_1:68865123-68865142 None:intergenic 55.0%
AGTTGGCACAGCGCACCAAT+AGG + chr1_1:68865124-68865143 None:intergenic 55.0%
! TCAGTTGAAGCAGGTGGTGG+TGG + chr1_1:68865460-68865479 None:intergenic 55.0%
GTCTCAGTTGAAGCAGGTGG+TGG + chr1_1:68865463-68865482 None:intergenic 55.0%
GTCGTCTCAGTTGAAGCAGG+TGG + chr1_1:68865466-68865485 None:intergenic 55.0%
!! TTCTTTGGAGCCTCAGGGAG+AGG + chr1_1:68865508-68865527 None:intergenic 55.0%
TCAACAACAGGAGGAGGAGG+AGG + chr1_1:68865574-68865593 None:intergenic 55.0%
TTGAGTTTCCTGAAGGGGGG+GGG - chr1_1:68866151-68866170 Msa0039330:intron 55.0%
! TCGATAGAGCCGCCCTCTTT+TGG + chr1_1:68866852-68866871 None:intergenic 55.0%
TATCACAAAAAGGCGGGGGG+GGG - chr1_1:68868079-68868098 Msa0039330:intron 55.0%
! TCGATAGAGCCGCCCTCTTT+TGG + chr1_1:68866852-68866871 None:intergenic 55.0%
!! GTTGAAGCAGGTGGTGGTGG+AGG + chr1_1:68865457-68865476 None:intergenic 60.0%
CTCAGGGAGAGGAGGAGAAG+GGG + chr1_1:68865497-68865516 None:intergenic 60.0%
CCTCAGGGAGAGGAGGAGAA+GGG + chr1_1:68865498-68865517 None:intergenic 60.0%
! TTTGGAGCCTCAGGGAGAGG+AGG + chr1_1:68865505-68865524 None:intergenic 60.0%
TGAGTTTCCTGAAGGGGGGG+GGG - chr1_1:68866152-68866171 Msa0039330:intron 60.0%
ATCACAAAAAGGCGGGGGGG+GGG - chr1_1:68868080-68868099 Msa0039330:intron 60.0%
CCCTTCTCCTCCTCTCCCTG+AGG - chr1_1:68865495-68865514 Msa0039330:intron 65.0%
GCCTCAGGGAGAGGAGGAGA+AGG + chr1_1:68865499-68865518 None:intergenic 65.0%
GAGTTTCCTGAAGGGGGGGG+GGG - chr1_1:68866153-68866172 Msa0039330:intron 65.0%
AGTTTCCTGAAGGGGGGGGG+GGG - chr1_1:68866154-68866173 Msa0039330:intron 65.0%
TCACAAAAAGGCGGGGGGGG+GGG - chr1_1:68868081-68868100 Msa0039330:intron 65.0%
GTTTCCTGAAGGGGGGGGGG+GGG - chr1_1:68866155-68866174 Msa0039330:intron 70.0%
TTTCCTGAAGGGGGGGGGGG+GGG - chr1_1:68866156-68866175 Msa0039330:intron 70.0%
GAGGGCGGCTCTATCGACCG+TGG - chr1_1:68866855-68866874 Msa0039330:intron 70.0%
CACAAAAAGGCGGGGGGGGG+GGG - chr1_1:68868082-68868101 Msa0039330:intron 70.0%
ACAAAAAGGCGGGGGGGGGG+GGG - chr1_1:68868083-68868102 Msa0039330:intron 70.0%
GAGGGCGGCTCTATCGACCG+TGG - chr1_1:68866855-68866874 Msa0039330:intron 70.0%
TTCCTGAAGGGGGGGGGGGG+GGG - chr1_1:68866157-68866176 Msa0039330:intron 75.0%
CAAAAAGGCGGGGGGGGGGG+GGG - chr1_1:68868084-68868103 Msa0039330:intron 75.0%
AAAAAGGCGGGGGGGGGGGG+GGG - chr1_1:68868085-68868104 Msa0039330:intron 75.0%
! TCCTGAAGGGGGGGGGGGGG+GGG - chr1_1:68866158-68866177 Msa0039330:intron 80.0%
! AAAAGGCGGGGGGGGGGGGG+GGG - chr1_1:68868086-68868105 Msa0039330:intron 80.0%
! CCTGAAGGGGGGGGGGGGGG+GGG - chr1_1:68866159-68866178 Msa0039330:intron 85.0%
! CTGAAGGGGGGGGGGGGGGG+GGG - chr1_1:68866160-68866179 Msa0039330:intron 85.0%
! TGAAGGGGGGGGGGGGGGGG+GGG - chr1_1:68866161-68866180 Msa0039330:intron 85.0%
! AAAGGCGGGGGGGGGGGGGG+GGG - chr1_1:68868087-68868106 Msa0039330:intron 85.0%
! CCCCCCCCCCCCCCCCCTTC+AGG + chr1_1:68866162-68866181 None:intergenic 90.0%
! GAAGGGGGGGGGGGGGGGGG+GGG - chr1_1:68866162-68866181 Msa0039330:intron 90.0%
! AAGGGGGGGGGGGGGGGGGG+GGG - chr1_1:68866163-68866182 Msa0039330:intron 90.0%
! AAGGCGGGGGGGGGGGGGGG+GGG - chr1_1:68868088-68868107 Msa0039330:intron 90.0%
! AGGGGGGGGGGGGGGGGGGG+GGG - chr1_1:68866164-68866183 Msa0039330:intron 95.0%
! AGGCGGGGGGGGGGGGGGGG+GGG - chr1_1:68868089-68868108 Msa0039330:intron 95.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 68865114 68869465 68865114 ID=Msa0039330;Name=Msa0039330
chr1_1 mRNA 68865114 68869465 68865114 ID=Msa0039330-mRNA-1;Parent=Msa0039330;Name=Msa0039330-mRNA-1;_AED=0.16;_eAED=0.18;_QI=289|0.57|0.5|1|1|1|8|0|377
chr1_1 exon 68865114 68865308 68865114 ID=Msa0039330-mRNA-1:exon:22569;Parent=Msa0039330-mRNA-1
chr1_1 exon 68865395 68865476 68865395 ID=Msa0039330-mRNA-1:exon:22568;Parent=Msa0039330-mRNA-1
chr1_1 exon 68865615 68865843 68865615 ID=Msa0039330-mRNA-1:exon:22567;Parent=Msa0039330-mRNA-1
chr1_1 exon 68867036 68867219 68867036 ID=Msa0039330-mRNA-1:exon:22566;Parent=Msa0039330-mRNA-1
chr1_1 exon 68867306 68867387 68867306 ID=Msa0039330-mRNA-1:exon:22565;Parent=Msa0039330-mRNA-1
chr1_1 exon 68867527 68867614 68867527 ID=Msa0039330-mRNA-1:exon:22564;Parent=Msa0039330-mRNA-1
chr1_1 exon 68867703 68867756 68867703 ID=Msa0039330-mRNA-1:exon:22563;Parent=Msa0039330-mRNA-1
chr1_1 exon 68868957 68869465 68868957 ID=Msa0039330-mRNA-1:exon:22562;Parent=Msa0039330-mRNA-1
chr1_1 five_prime_UTR 68869177 68869465 68869177 ID=Msa0039330-mRNA-1:five_prime_utr;Parent=Msa0039330-mRNA-1
chr1_1 CDS 68868957 68869176 68868957 ID=Msa0039330-mRNA-1:cds;Parent=Msa0039330-mRNA-1
chr1_1 CDS 68867703 68867756 68867703 ID=Msa0039330-mRNA-1:cds;Parent=Msa0039330-mRNA-1
chr1_1 CDS 68867527 68867614 68867527 ID=Msa0039330-mRNA-1:cds;Parent=Msa0039330-mRNA-1
chr1_1 CDS 68867306 68867387 68867306 ID=Msa0039330-mRNA-1:cds;Parent=Msa0039330-mRNA-1
chr1_1 CDS 68867036 68867219 68867036 ID=Msa0039330-mRNA-1:cds;Parent=Msa0039330-mRNA-1
chr1_1 CDS 68865615 68865843 68865615 ID=Msa0039330-mRNA-1:cds;Parent=Msa0039330-mRNA-1
chr1_1 CDS 68865395 68865476 68865395 ID=Msa0039330-mRNA-1:cds;Parent=Msa0039330-mRNA-1
chr1_1 CDS 68865114 68865308 68865114 ID=Msa0039330-mRNA-1:cds;Parent=Msa0039330-mRNA-1
Gene Sequence

>Msa0039330

ATGACAGATCAAGAGCAACCAAAAAAGATAGAATCTGAATCAACATCGAATCCTCCACCACCACCTGCTTCAACTGAGACGACTACTACTACCCCTTCTCCTCCTCTCCCTGAGGCTCCAAAGAAAGATGTAGCTGAGGAGAAAGCTGTAATTCCACAAGATAATAATCCTCCTCCTCCTCCTGTTGTTGATGACTCCAAAGCTCTTGTCATAGCTCAGAAGACTGATGAAGTTGCTGAAGAGAAACCAAAAGAGGGCGGCTCTATCGACCGTGATGCTGTGCTTACAAGAGTTGCAACAGAAAAGAGGCTGTCACTAATCAAAGCATGGGAAGAAAGTGAAAAGTCAAAAGCAGAGAACAAAGCTCAGAGAAAACTTTCATCCATAACAGCATGGGAGAACAGTAAGAAAGCTGCTAAAGAAGCTGAATTGAGAAAACTTGAGGAACAACTAGAGAAGAAAAAGGGAGAATATGCTGAGAAAATGAAAAACAAAATAGCAGCACTTCACAAGGCAGCTGAAGAAAAGAAGGCTATGATTGAGGCAAAGAAAGGTGAAGAATTACTCAAAGCAGAAGAGGTAGCTGCAAAATACAGGGCAACTGGAACAGCTCCAAAGAAACTCTTTGAGACTGATGAAGTTGCTGAAGAGAAACCAAAAGAGGGCGGCTCTATCGACCGTGGTATATATCTTGTCATTGTGACACTCAATTTCCTTTATGCACTTCATATGCTAACATTACAGGTTATGACATTTCATTCTTGTTCAGATGCTGTGCTTACAAGAGTTGCAACAGAAAAGAGGCTGTCACTAATCAAAGCATGGGAAGAAAGTGAAAAGTCAAAAGCAGAGAACAAAGCTCAGAGAAAACTTTCATCCATAACAGCATGGGAGAACAGTAAGAAAGCTGCTAAAGAAGCTGAATTGAGAAAACTTGAGGAACAACTAGAGAAGAAAAAGGGAGAATATGCTGAGAAAATGAAAAACAAAATAGCAGCACTTCACAAGGCAGCTGAAGAAAAGAAGGCTATGATTGAGGCAAAGAAAGGTGAAGAATTACTCAAAGCAGAAGAGGTAGCTGCAAAATACAGGGCAACTGGAACAGCTCCAAAGAAACTCTTTGGTCTTTTCTAA

Protein sequence

>Msa0039330

MTDQEQPKKIESESTSNPPPPPASTETTTTTPSPPLPEAPKKDVAEEKAVIPQDNNPPPPPVVDDSKALVIAQKTDEVAEEKPKEGGSIDRDAVLTRVATEKRLSLIKAWEESEKSKAENKAQRKLSSITAWENSKKAAKEAELRKLEEQLEKKKGEYAEKMKNKIAALHKAAEEKKAMIEAKKGEELLKAEEVAAKYRATGTAPKKLFETDEVAEEKPKEGGSIDRGIYLVIVTLNFLYALHMLTLQVMTFHSCSDAVLTRVATEKRLSLIKAWEESEKSKAENKAQRKLSSITAWENSKKAAKEAELRKLEEQLEKKKGEYAEKMKNKIAALHKAAEEKKAMIEAKKGEELLKAEEVAAKYRATGTAPKKLFGLF*