Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0657890 | XP_003629897.2 | 95.987 | 299 | 10 | 1 | 1 | 297 | 1 | 299 | 0.0 | 585 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0657890 | sp|Q8L7A0|TAUE3_ARATH | 59.916 | 237 | 90 | 2 | 62 | 297 | 64 | 296 | 7.26e-87 | 271 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0657890 | Msa0701770 | 0.863249 | 2.849502e-64 | -8.615850e-47 |
| Msa0657890 | Msa1287160 | 0.828429 | 9.034424e-55 | -8.615850e-47 |
| Msa0657890 | Msa1287340 | 0.817178 | 3.773392e-52 | -8.615850e-47 |
| Msa0164660 | Msa0657890 | 0.900802 | 5.088218e-78 | -8.615850e-47 |
| Msa0251670 | Msa0657890 | 0.811847 | 5.704303e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0657890 | MtrunA17_Chr8g0380211 | 95.987 | 299 | 10 | 1 | 1 | 297 | 1 | 299 | 0.0 | 585 |
| Msa0657890 | MtrunA17_Chr3g0139541 | 53.898 | 295 | 110 | 5 | 20 | 297 | 5 | 290 | 1.88e-89 | 275 |
| Msa0657890 | MtrunA17_Chr8g0373471 | 57.511 | 233 | 95 | 2 | 65 | 297 | 62 | 290 | 9.79e-86 | 265 |
| Msa0657890 | MtrunA17_Chr5g0403901 | 50.350 | 286 | 124 | 5 | 21 | 297 | 16 | 292 | 3.57e-82 | 256 |
| Msa0657890 | MtrunA17_Chr1g0157751 | 49.286 | 280 | 131 | 4 | 24 | 297 | 5 | 279 | 3.73e-78 | 245 |
| Msa0657890 | MtrunA17_Chr8g0380191 | 68.786 | 173 | 15 | 1 | 125 | 297 | 10 | 143 | 5.20e-73 | 228 |
| Msa0657890 | MtrunA17_Chr7g0265481 | 46.792 | 265 | 126 | 3 | 39 | 297 | 22 | 277 | 1.25e-67 | 218 |
| Msa0657890 | MtrunA17_Chr1g0179621 | 45.494 | 233 | 116 | 2 | 69 | 297 | 55 | 280 | 3.92e-59 | 196 |
| Msa0657890 | MtrunA17_Chr2g0280401 | 31.429 | 210 | 126 | 6 | 101 | 297 | 85 | 289 | 1.98e-21 | 94.0 |
| Msa0657890 | MtrunA17_Chr8g0380201 | 76.923 | 52 | 11 | 1 | 72 | 123 | 1 | 51 | 2.35e-13 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0657890 | AT2G25737.2 | 59.916 | 237 | 90 | 2 | 62 | 297 | 64 | 296 | 7.34e-89 | 270 |
| Msa0657890 | AT2G25737.1 | 59.916 | 237 | 90 | 2 | 62 | 297 | 64 | 296 | 7.38e-88 | 271 |
| Msa0657890 | AT2G36630.1 | 44.404 | 277 | 136 | 3 | 25 | 297 | 12 | 274 | 5.10e-67 | 217 |
| Msa0657890 | AT1G61740.1 | 31.120 | 241 | 138 | 6 | 66 | 294 | 47 | 271 | 5.35e-23 | 99.0 |
| Msa0657890 | AT1G11540.2 | 30.702 | 228 | 136 | 6 | 79 | 297 | 56 | 270 | 2.85e-22 | 97.1 |
| Msa0657890 | AT1G11540.1 | 30.000 | 200 | 118 | 6 | 107 | 297 | 1 | 187 | 8.96e-22 | 94.7 |
| Msa0657890 | AT4G21250.1 | 33.191 | 235 | 133 | 6 | 72 | 297 | 52 | 271 | 1.09e-20 | 92.4 |
| Msa0657890 | AT4G21260.1 | 26.047 | 215 | 115 | 7 | 24 | 224 | 4 | 188 | 2.56e-17 | 82.0 |
Find 65 sgRNAs with CRISPR-Local
Find 378 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAAGCAACCTTCTTAATT+AGG | 0.114343 | 4_3:-67854829 | None:intergenic |
| TTGCATCAAATCCAACAATT+AGG | 0.193443 | 4_3:-67850418 | None:intergenic |
| TTCAGTTAACGCTTTCTTAA+AGG | 0.219446 | 4_3:+67854781 | Msa0657890:CDS |
| ATTATAGTAGGCACCATAAT+TGG | 0.247950 | 4_3:+67850326 | Msa0657890:CDS |
| AAATTTGTGCCTCAGATATT+AGG | 0.252420 | 4_3:+67855229 | Msa0657890:intron |
| CAACTTGCTCTGTGATATAT+TGG | 0.267366 | 4_3:+67855645 | Msa0657890:CDS |
| CTGTTATTGAGAATGTTTAT+TGG | 0.304503 | 4_3:+67855428 | Msa0657890:CDS |
| TTAAGCAACCTTCTTAATTA+GGG | 0.308535 | 4_3:-67854828 | None:intergenic |
| TCAGTTAACGCTTTCTTAAA+GGG | 0.319947 | 4_3:+67854782 | Msa0657890:CDS |
| AAGGACAATTCACAATTAAA+TGG | 0.329730 | 4_3:+67854954 | Msa0657890:CDS |
| ATCAACCCCTTTGGTCTCAT+TGG | 0.333284 | 4_3:-67849936 | None:intergenic |
| TGTATCCAGGGGATGAAATT+TGG | 0.334894 | 4_3:+67850296 | Msa0657890:intron |
| GGCACCATAATTGGATTTCT+AGG | 0.338037 | 4_3:+67850335 | Msa0657890:CDS |
| TGATCCTAGAAATCCAATTA+TGG | 0.365400 | 4_3:-67850339 | None:intergenic |
| TTGGATATTGAATCTACTTC+AGG | 0.367111 | 4_3:+67855664 | Msa0657890:CDS |
| CCCATGCTTACCCTAATTGT+TGG | 0.368742 | 4_3:+67850407 | Msa0657890:CDS |
| TGCATCAAATCCAACAATTA+GGG | 0.369369 | 4_3:-67850417 | None:intergenic |
| GCACTGTAGGAGGTGTTGGC+GGG | 0.372369 | 4_3:+67850369 | Msa0657890:CDS |
| TATATAAATATATAGATATA+CGG | 0.382605 | 4_3:-67849761 | None:intergenic |
| TGGTGTGAAGTCATGATTAC+AGG | 0.393803 | 4_3:+67854467 | Msa0657890:intron |
| GGATTTCTAGGATCATCATT+TGG | 0.421957 | 4_3:+67850347 | Msa0657890:CDS |
| GGCACTGTAGGAGGTGTTGG+CGG | 0.422371 | 4_3:+67850368 | Msa0657890:CDS |
| ACTGTAGGAGGTGTTGGCGG+GGG | 0.427739 | 4_3:+67850371 | Msa0657890:CDS |
| TTCCAACCAATGTTAATGCT+TGG | 0.430788 | 4_3:+67854578 | Msa0657890:CDS |
| TTGAGAAACTAATACAAAGC+TGG | 0.434504 | 4_3:-67855972 | Msa0657900:three_prime_UTR |
| TTTGGTTGGAGAATTATAGT+AGG | 0.441512 | 4_3:+67850314 | Msa0657890:CDS |
| TTCCAAGCATTAACATTGGT+TGG | 0.444141 | 4_3:-67854580 | None:intergenic |
| AGCATGAATATCAACCCCTT+TGG | 0.447045 | 4_3:-67849945 | None:intergenic |
| AATGTTTATTGGAAGGAACT+TGG | 0.447909 | 4_3:+67855439 | Msa0657890:CDS |
| CACTGTAGGAGGTGTTGGCG+GGG | 0.461011 | 4_3:+67850370 | Msa0657890:CDS |
| ATGATACTTGCATTACAGAT+AGG | 0.472420 | 4_3:+67855484 | Msa0657890:CDS |
| CCTTTGGTCTCATTGGAAGC+TGG | 0.479702 | 4_3:-67849929 | None:intergenic |
| GACATGAAATGGGTAATTCT+CGG | 0.482560 | 4_3:+67849818 | Msa0657890:CDS |
| CAGCTTCCAATGAGACCAAA+GGG | 0.488935 | 4_3:+67849930 | Msa0657890:CDS |
| GGGTAATTCTCGGAAGATCA+AGG | 0.491898 | 4_3:+67849828 | Msa0657890:CDS |
| TCCAACAATTAGGGTAAGCA+TGG | 0.493163 | 4_3:-67850408 | None:intergenic |
| TCTTAAAGGGTGTTAACACT+TGG | 0.497473 | 4_3:+67854795 | Msa0657890:CDS |
| TCACAGGAAGGTCAAGGGTT+GGG | 0.499471 | 4_3:-67854532 | None:intergenic |
| GTCATGATTACAGGTGGAGC+AGG | 0.500271 | 4_3:+67854476 | Msa0657890:intron |
| AAAGTTGTTATCATCCAGTC+AGG | 0.505433 | 4_3:-67854635 | None:intergenic |
| TTTGGCACTGTAGGAGGTGT+TGG | 0.507733 | 4_3:+67850365 | Msa0657890:CDS |
| AAAAGAAACCCTAATTAAGA+AGG | 0.512933 | 4_3:+67854820 | Msa0657890:CDS |
| GGATCATCATTTGGCACTGT+AGG | 0.523691 | 4_3:+67850356 | Msa0657890:CDS |
| TATATTTATATACATGATGA+TGG | 0.524752 | 4_3:+67849772 | Msa0657890:exon |
| TCCAGGGGATGAAATTTGGT+TGG | 0.525775 | 4_3:+67850300 | Msa0657890:intron |
| TATTGAGAATGTTTATTGGA+AGG | 0.526737 | 4_3:+67855432 | Msa0657890:CDS |
| GCTAAATCATAGTCAATCAC+AGG | 0.528690 | 4_3:-67854548 | None:intergenic |
| TGAGAAACTAATACAAAGCT+GGG | 0.537349 | 4_3:-67855971 | Msa0657900:three_prime_UTR |
| TCATCATTTGGCACTGTAGG+AGG | 0.542570 | 4_3:+67850359 | Msa0657890:CDS |
| ATCACAGGAAGGTCAAGGGT+TGG | 0.551848 | 4_3:-67854533 | None:intergenic |
| GCTACACATGATCTTCAAGA+AGG | 0.556897 | 4_3:+67855261 | Msa0657890:CDS |
| CTACACATGATCTTCAAGAA+GGG | 0.558961 | 4_3:+67855262 | Msa0657890:CDS |
| GCTACAATTCCAGGAAGCTA+AGG | 0.564231 | 4_3:+67854935 | Msa0657890:intron |
| CTGATTCCAAGCATTAACAT+TGG | 0.568778 | 4_3:-67854584 | None:intergenic |
| TTAATGCTTGGAATCAGTCT+TGG | 0.581697 | 4_3:+67854590 | Msa0657890:CDS |
| AGTCAATCACAGGAAGGTCA+AGG | 0.596559 | 4_3:-67854538 | None:intergenic |
| GTCAATCACAGGAAGGTCAA+GGG | 0.619378 | 4_3:-67854537 | None:intergenic |
| TACATGATGATGGCTATGCA+TGG | 0.626660 | 4_3:+67849782 | Msa0657890:exon |
| TACACATGATCTTCAAGAAG+GGG | 0.631347 | 4_3:+67855263 | Msa0657890:CDS |
| CCAGCTTCCAATGAGACCAA+AGG | 0.634848 | 4_3:+67849929 | Msa0657890:CDS |
| CCAACAATTAGGGTAAGCAT+GGG | 0.643147 | 4_3:-67850407 | None:intergenic |
| AATCATAGTCAATCACAGGA+AGG | 0.653054 | 4_3:-67854544 | None:intergenic |
| TGGGATCAAATTGAGTGTTG+TGG | 0.680418 | 4_3:-67855952 | Msa0657900:three_prime_UTR |
| TGTGAAGTCATGATTACAGG+TGG | 0.702559 | 4_3:+67854470 | Msa0657890:intron |
| AGCTTCCAATGAGACCAAAG+GGG | 0.761463 | 4_3:+67849931 | Msa0657890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+TGG | + | chr4_3:67850022-67850041 | Msa0657890:intron | 0.0% |
| !! | AAAAAAAAAATCAAAGAATA+AGG | - | chr4_3:67850503-67850522 | None:intergenic | 10.0% |
| !!! | TATTCTTTGATTTTTTTTTT+TGG | + | chr4_3:67850503-67850522 | Msa0657890:intron | 10.0% |
| !!! | ATTCTTTGATTTTTTTTTTT+GGG | + | chr4_3:67850504-67850523 | Msa0657890:intron | 10.0% |
| !!! | ATATTATTTTTATATTGCTT+TGG | - | chr4_3:67850881-67850900 | None:intergenic | 10.0% |
| !!! | ATATCACAATTAAATAATTT+TGG | - | chr4_3:67850997-67851016 | None:intergenic | 10.0% |
| !!! | CTTAATTATATCTAATTTTA+TGG | - | chr4_3:67851045-67851064 | None:intergenic | 10.0% |
| !!! | AATAAAATTAATTTTTTGAG+AGG | + | chr4_3:67851149-67851168 | Msa0657890:intron | 10.0% |
| !!! | TTATTATTAGCTTTTTTTAT+CGG | + | chr4_3:67851236-67851255 | Msa0657890:intron | 10.0% |
| !!! | ACAAATTGTTTTTTTTTTTA+AGG | + | chr4_3:67851264-67851283 | Msa0657890:intron | 10.0% |
| !! | TTATAAAGTAGTAAAATTTA+GGG | - | chr4_3:67851503-67851522 | None:intergenic | 10.0% |
| !! | TTTATAAAGTAGTAAAATTT+AGG | - | chr4_3:67851504-67851523 | None:intergenic | 10.0% |
| !!! | ATGTTAATACTTTTTTTTTT+TGG | - | chr4_3:67852403-67852422 | None:intergenic | 10.0% |
| !! | AGTAAAAATATGAAATTATA+GGG | - | chr4_3:67853137-67853156 | None:intergenic | 10.0% |
| !! | AAGTAAAAATATGAAATTAT+AGG | - | chr4_3:67853138-67853157 | None:intergenic | 10.0% |
| !!! | ATAATTTCATATTTTTACTT+TGG | + | chr4_3:67853138-67853157 | Msa0657890:intron | 10.0% |
| !!! | AACTTTTTTAATAATATACT+TGG | + | chr4_3:67853574-67853593 | Msa0657890:intron | 10.0% |
| !! | GACAAAAATAAAAATAATTT+AGG | + | chr4_3:67853596-67853615 | Msa0657890:intron | 10.0% |
| !! | TAGAAAAAATATATATATGT+TGG | - | chr4_3:67855372-67855391 | None:intergenic | 10.0% |
| !! | TGATTAATTTATTCTATTTA+TGG | - | chr4_3:67855884-67855903 | Msa0657900:three_prime_UTR | 10.0% |
| !! | TATATTTATATACATGATGA+TGG | + | chr4_3:67849772-67849791 | Msa0657890:exon | 15.0% |
| !!! | ATTTAAATGCATTTTTCTAA+AGG | - | chr4_3:67850573-67850592 | None:intergenic | 15.0% |
| !! | AAATGCATTTAAATTATGTT+AGG | + | chr4_3:67850579-67850598 | Msa0657890:intron | 15.0% |
| !!! | TTTTTTTCTTTGTGAAAAAA+CGG | + | chr4_3:67850955-67850974 | Msa0657890:intron | 15.0% |
| !!! | AATTGTTTTTTTTTTTAAGG+AGG | + | chr4_3:67851267-67851286 | Msa0657890:intron | 15.0% |
| !! | AATAAAATGAAAACTAACTA+AGG | - | chr4_3:67851454-67851473 | None:intergenic | 15.0% |
| !!! | TAGTTAGTTTTCATTTTATT+TGG | + | chr4_3:67851454-67851473 | Msa0657890:intron | 15.0% |
| !! | TATAAAGTAGTAAAATTTAG+GGG | - | chr4_3:67851502-67851521 | None:intergenic | 15.0% |
| !!! | AATACTTTTTTTTTTTGGTT+TGG | - | chr4_3:67852398-67852417 | None:intergenic | 15.0% |
| !!! | GTATTAACATCAATTATTTT+TGG | + | chr4_3:67852413-67852432 | Msa0657890:intron | 15.0% |
| !!! | AATAAGATACGTTTTTTTTA+GGG | - | chr4_3:67852639-67852658 | None:intergenic | 15.0% |
| !!! | AAATAAGATACGTTTTTTTT+AGG | - | chr4_3:67852640-67852659 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTACAACTCAAT+AGG | + | chr4_3:67852714-67852733 | Msa0657890:intron | 15.0% |
| !! | GAAGATCTATAAAATAAAAA+AGG | - | chr4_3:67852760-67852779 | None:intergenic | 15.0% |
| !! | ATAAGATGATATATTTGATA+GGG | - | chr4_3:67852807-67852826 | None:intergenic | 15.0% |
| !! | TATAAGATGATATATTTGAT+AGG | - | chr4_3:67852808-67852827 | None:intergenic | 15.0% |
| !! | TATACATATAAAGGAATAAT+CGG | - | chr4_3:67852874-67852893 | None:intergenic | 15.0% |
| !! | ATATGAACTTATACATATAA+AGG | - | chr4_3:67852883-67852902 | None:intergenic | 15.0% |
| !!! | AATTTTAAAATGAAATGTCA+AGG | + | chr4_3:67852936-67852955 | Msa0657890:intron | 15.0% |
| !! | CAATATTAAGATGATAAATT+AGG | + | chr4_3:67853046-67853065 | Msa0657890:intron | 15.0% |
| !! | GGTATTAAAATAAGTTAATT+TGG | - | chr4_3:67853212-67853231 | None:intergenic | 15.0% |
| !! | TATTATTAAAAAAGTTGACT+AGG | - | chr4_3:67853570-67853589 | None:intergenic | 15.0% |
| !! | TGTATATCTTAACATAAAAA+AGG | - | chr4_3:67853954-67853973 | None:intergenic | 15.0% |
| !!! | AAATTAAGATTCAATTTTGT+AGG | - | chr4_3:67854698-67854717 | None:intergenic | 15.0% |
| !!! | AAGTATTTTATAAACACACT+TGG | + | chr4_3:67849969-67849988 | Msa0657890:CDS | 20.0% |
| !! | TAGGATTATATATGATTATG+TGG | + | chr4_3:67850249-67850268 | Msa0657890:intron | 20.0% |
| !! | ATAGTTCAAATCAAAGAATA+AGG | - | chr4_3:67850537-67850556 | None:intergenic | 20.0% |
| !!! | TTTTTTCTTTGTGAAAAAAC+GGG | + | chr4_3:67850956-67850975 | Msa0657890:intron | 20.0% |
| !!! | TTAAATAATTTTGGTAAGCA+TGG | - | chr4_3:67850988-67851007 | None:intergenic | 20.0% |
| !! | AATTAAGAATAAGAGAAAAG+CGG | + | chr4_3:67851058-67851077 | Msa0657890:intron | 20.0% |
| !!! | AAAAATATCTATCTTTTCAC+TGG | + | chr4_3:67851118-67851137 | Msa0657890:intron | 20.0% |
| !!! | TTCTTGAAGATTTTTTTTTG+AGG | + | chr4_3:67851202-67851221 | Msa0657890:intron | 20.0% |
| !!! | TCTTGAAGATTTTTTTTTGA+GGG | + | chr4_3:67851203-67851222 | Msa0657890:intron | 20.0% |
| !! | ATAAAGTAGTAAAATTTAGG+GGG | - | chr4_3:67851501-67851520 | None:intergenic | 20.0% |
| !!! | ATTTCCCTATATTTTTTTCA+CGG | - | chr4_3:67851602-67851621 | None:intergenic | 20.0% |
| !!! | TCAAGGAATGTTATATTTTT+GGG | - | chr4_3:67851802-67851821 | None:intergenic | 20.0% |
| !!! | TTCAAGGAATGTTATATTTT+TGG | - | chr4_3:67851803-67851822 | None:intergenic | 20.0% |
| !!! | TTTTGTTGTTAGTTTTTATC+AGG | + | chr4_3:67852533-67852552 | Msa0657890:intron | 20.0% |
| !! | AGATAACTCAATAAATTTAG+AGG | - | chr4_3:67852583-67852602 | None:intergenic | 20.0% |
| !! | TAAGATGATATATTTGATAG+GGG | - | chr4_3:67852806-67852825 | None:intergenic | 20.0% |
| !! | CATCATAAAAAATTGTGATA+TGG | + | chr4_3:67853500-67853519 | Msa0657890:intron | 20.0% |
| !!! | TACTTTAAAAAATGTTGACT+CGG | - | chr4_3:67853530-67853549 | None:intergenic | 20.0% |
| !! | AAGATAAAAATGACTATGTA+GGG | - | chr4_3:67854192-67854211 | None:intergenic | 20.0% |
| !! | CTCTATTAAATTACCTAATA+TGG | + | chr4_3:67854406-67854425 | Msa0657890:intron | 20.0% |
| !!! | TTGCTAATCATATTTTTTAC+TGG | + | chr4_3:67854656-67854675 | Msa0657890:CDS | 20.0% |
| !!! | TTTTTACCAGAACTAAATTT+TGG | - | chr4_3:67855027-67855046 | None:intergenic | 20.0% |
| !! | AAATATATATATGTTGGACA+TGG | - | chr4_3:67855366-67855385 | None:intergenic | 20.0% |
| ! | TGAATATTGAAAACACTTAC+CGG | - | chr4_3:67849995-67850014 | None:intergenic | 25.0% |
| !!! | TAGTAGTATTGAGATCTTTT+AGG | + | chr4_3:67850230-67850249 | Msa0657890:intron | 25.0% |
| ! | TTGGAATTGTTTAAATCACA+AGG | - | chr4_3:67850862-67850881 | None:intergenic | 25.0% |
| !! | TTTTTCTTTGTGAAAAAACG+GGG | + | chr4_3:67850957-67850976 | Msa0657890:intron | 25.0% |
| !!! | TCTTTATTCCTTGTTTTTTC+TGG | + | chr4_3:67851349-67851368 | Msa0657890:intron | 25.0% |
| ! | AAAACTAACTAAGGAAAAGA+AGG | - | chr4_3:67851445-67851464 | None:intergenic | 25.0% |
| !!! | TTTCCCTATATTTTTTTCAC+GGG | - | chr4_3:67851601-67851620 | None:intergenic | 25.0% |
| ! | ATTGGTTAAGGATATGAAAA+AGG | + | chr4_3:67851643-67851662 | Msa0657890:intron | 25.0% |
| !! | TCAAAAACAGTTTCCTTTTA+TGG | + | chr4_3:67851718-67851737 | Msa0657890:intron | 25.0% |
| !!! | TTTTTTGTAAGGTAGTCTAA+TGG | + | chr4_3:67851973-67851992 | Msa0657890:intron | 25.0% |
| !!! | GAATTCACCTTTTTTTTGTA+AGG | + | chr4_3:67852021-67852040 | Msa0657890:intron | 25.0% |
| ! | TAGACTACCTTACAAAAAAA+AGG | - | chr4_3:67851972-67851991 | None:intergenic | 25.0% |
| !!! | TTTTTTGTAAGGTAGTCTAA+TGG | + | chr4_3:67851973-67851992 | Msa0657890:intron | 25.0% |
| !!! | TTTTTTGTAAGGTAGTCTAA+TGG | + | chr4_3:67851973-67851992 | Msa0657890:intron | 25.0% |
| !!! | GAATTCACCTTTTTTTTGTA+AGG | + | chr4_3:67852021-67852040 | Msa0657890:intron | 25.0% |
| ! | TAGACTACCTTACAAAAAAA+AGG | - | chr4_3:67851972-67851991 | None:intergenic | 25.0% |
| !!! | TTTTTTGTAAGGTAGTCTAA+TGG | + | chr4_3:67851973-67851992 | Msa0657890:intron | 25.0% |
| ! | TAAGTGAATAAGTGAATAAG+TGG | + | chr4_3:67852253-67852272 | Msa0657890:intron | 25.0% |
| ! | AAGTGAATAAGTGAATAAGT+GGG | + | chr4_3:67852254-67852273 | Msa0657890:intron | 25.0% |
| ! | TATTGAGTTATCTCTAAATC+AGG | + | chr4_3:67852590-67852609 | Msa0657890:intron | 25.0% |
| !! | TAGATCTTCTTTGTTGTATT+TGG | + | chr4_3:67852771-67852790 | Msa0657890:intron | 25.0% |
| ! | TATCATCTTATATGCTTAAG+AGG | + | chr4_3:67852816-67852835 | Msa0657890:intron | 25.0% |
| ! | TAGGTAAAAATAATCGGATT+AGG | - | chr4_3:67852849-67852868 | None:intergenic | 25.0% |
| !! | TCGGATTAGGTAAAAATAAT+CGG | - | chr4_3:67852855-67852874 | None:intergenic | 25.0% |
| ! | TATAAAGGAATAATCGGATT+AGG | - | chr4_3:67852868-67852887 | None:intergenic | 25.0% |
| !! | TCTGGAATATAAGTCAAATA+TGG | + | chr4_3:67853088-67853107 | Msa0657890:intron | 25.0% |
| ! | TGGTGTATATATGTGAAAAT+TGG | + | chr4_3:67853759-67853778 | Msa0657890:intron | 25.0% |
| ! | GGTGTATATATGTGAAAATT+GGG | + | chr4_3:67853760-67853779 | Msa0657890:intron | 25.0% |
| ! | CAAGAAAATAAGATAGGAAT+TGG | - | chr4_3:67853841-67853860 | None:intergenic | 25.0% |
| !!! | CAATTCCTATCTTATTTTCT+TGG | + | chr4_3:67853839-67853858 | Msa0657890:intron | 25.0% |
| ! | TATCTTACTTTGAACTAGAT+GGG | - | chr4_3:67853984-67854003 | None:intergenic | 25.0% |
| !!! | ATGCGGTTTTAAGATATTTT+TGG | - | chr4_3:67854014-67854033 | None:intergenic | 25.0% |
| ! | CAAGATAAAAATGACTATGT+AGG | - | chr4_3:67854193-67854212 | None:intergenic | 25.0% |
| ! | AATATCAAGATCAACCAAAA+AGG | + | chr4_3:67854309-67854328 | Msa0657890:intron | 25.0% |
| !! | ATGTTATATTGGTTAGAAAG+AGG | - | chr4_3:67854343-67854362 | None:intergenic | 25.0% |
| ! | ATATGCATTCAATCCATATT+AGG | - | chr4_3:67854422-67854441 | None:intergenic | 25.0% |
| ! | TGTTTGTTTGTTTGTTTGTT+TGG | + | chr4_3:67854443-67854462 | Msa0657890:intron | 25.0% |
| ! | TATCGAAAACTACATCAATA+TGG | - | chr4_3:67854746-67854765 | None:intergenic | 25.0% |
| !! | TTGATGTAGTTTTCGATATA+TGG | + | chr4_3:67854748-67854767 | Msa0657890:intron | 25.0% |
| !! | TGATGTAGTTTTCGATATAT+GGG | + | chr4_3:67854749-67854768 | Msa0657890:intron | 25.0% |
| ! | AAAAGAAACCCTAATTAAGA+AGG | + | chr4_3:67854820-67854839 | Msa0657890:CDS | 25.0% |
| ! | TTAAGCAACCTTCTTAATTA+GGG | - | chr4_3:67854831-67854850 | None:intergenic | 25.0% |
| ! | TTTAAGCAACCTTCTTAATT+AGG | - | chr4_3:67854832-67854851 | None:intergenic | 25.0% |
| ! | AAGGACAATTCACAATTAAA+TGG | + | chr4_3:67854954-67854973 | Msa0657890:CDS | 25.0% |
| ! | ATTCACTTGTCACTAAATTT+AGG | + | chr4_3:67855064-67855083 | Msa0657890:intron | 25.0% |
| ! | TTCACTTGTCACTAAATTTA+GGG | + | chr4_3:67855065-67855084 | Msa0657890:intron | 25.0% |
| ! | ACATAATGTATAGAAAATGC+AGG | - | chr4_3:67855171-67855190 | None:intergenic | 25.0% |
| !! | TTTTCTTGGTAGATTAGTAT+TGG | - | chr4_3:67855310-67855329 | None:intergenic | 25.0% |
| ! | TACTAATCTACCAAGAAAAA+AGG | + | chr4_3:67855311-67855330 | Msa0657890:CDS | 25.0% |
| ! | CTGTTATTGAGAATGTTTAT+TGG | + | chr4_3:67855428-67855447 | Msa0657890:CDS | 25.0% |
| ! | TATTGAGAATGTTTATTGGA+AGG | + | chr4_3:67855432-67855451 | Msa0657890:CDS | 25.0% |
| ! | ATCTACTTCAGGTATATATA+TGG | + | chr4_3:67855675-67855694 | Msa0657890:intron | 25.0% |
| TATGCATGGATCAAAAAGAA+GGG | + | chr4_3:67849796-67849815 | Msa0657890:CDS | 30.0% | |
| AAAAAGAAGGGACATGAAAT+GGG | + | chr4_3:67849808-67849827 | Msa0657890:CDS | 30.0% | |
| ! | ATTTTATAAACACACTTGGC+CGG | + | chr4_3:67849973-67849992 | Msa0657890:CDS | 30.0% |
| ! | TTTTGAACTGATGATCTTTG+TGG | + | chr4_3:67850273-67850292 | Msa0657890:intron | 30.0% |
| TTTGGTTGGAGAATTATAGT+AGG | + | chr4_3:67850314-67850333 | Msa0657890:CDS | 30.0% | |
| ATTATAGTAGGCACCATAAT+TGG | + | chr4_3:67850326-67850345 | Msa0657890:CDS | 30.0% | |
| TGATCCTAGAAATCCAATTA+TGG | - | chr4_3:67850342-67850361 | None:intergenic | 30.0% | |
| TGCATCAAATCCAACAATTA+GGG | - | chr4_3:67850420-67850439 | None:intergenic | 30.0% | |
| TTGCATCAAATCCAACAATT+AGG | - | chr4_3:67850421-67850440 | None:intergenic | 30.0% | |
| ATAGCATTCTGAATGTTATG+AGG | - | chr4_3:67850673-67850692 | None:intergenic | 30.0% | |
| GTTAGTTGAGAGATCTTATT+TGG | + | chr4_3:67850921-67850940 | Msa0657890:intron | 30.0% | |
| TATGCGTGCAAGTAAATATT+TGG | + | chr4_3:67851319-67851338 | Msa0657890:intron | 30.0% | |
| CCAATATTCCAGAAAAAACA+AGG | - | chr4_3:67851360-67851379 | None:intergenic | 30.0% | |
| !!! | CCTTGTTTTTTCTGGAATAT+TGG | + | chr4_3:67851357-67851376 | Msa0657890:intron | 30.0% |
| TAGTAAAATTTAGGGGGAAA+AGG | - | chr4_3:67851495-67851514 | None:intergenic | 30.0% | |
| TTCTCCCGTGAAAAAAATAT+AGG | + | chr4_3:67851594-67851613 | Msa0657890:intron | 30.0% | |
| TCTCCCGTGAAAAAAATATA+GGG | + | chr4_3:67851595-67851614 | Msa0657890:intron | 30.0% | |
| AAATATAGGGAAATGCTAAC+TGG | + | chr4_3:67851608-67851627 | Msa0657890:intron | 30.0% | |
| !! | AAGGGTATTGTTACCATAAA+AGG | - | chr4_3:67851734-67851753 | None:intergenic | 30.0% |
| ! | ATGGTAACAATACCCTTTTA+TGG | + | chr4_3:67851737-67851756 | Msa0657890:intron | 30.0% |
| AGGTTAAGCATACCATAAAA+GGG | - | chr4_3:67851752-67851771 | None:intergenic | 30.0% | |
| ACTTTCTCTCTAATTAAGCT+AGG | + | chr4_3:67851855-67851874 | Msa0657890:intron | 30.0% | |
| ! | CTTAAAAAGTTTGAAGCCTA+AGG | - | chr4_3:67851929-67851948 | None:intergenic | 30.0% |
| ! | CTTAGGCTTCAAACTTTTTA+AGG | + | chr4_3:67851927-67851946 | Msa0657890:intron | 30.0% |
| ! | GTTTTGTAAGGTAGTCTAAT+GGG | + | chr4_3:67851995-67852014 | Msa0657890:intron | 30.0% |
| ! | GTTTTGTAAGGTAGTCTAAT+GGG | + | chr4_3:67851995-67852014 | Msa0657890:intron | 30.0% |
| AGTGAATAAGTGAATAAGTG+GGG | + | chr4_3:67852255-67852274 | Msa0657890:intron | 30.0% | |
| !! | GTATTAGTGTTATTTGTCTC+TGG | + | chr4_3:67853070-67853089 | Msa0657890:intron | 30.0% |
| ! | ATTCATCAGTTTTCGTTTCA+GGG | - | chr4_3:67853187-67853206 | None:intergenic | 30.0% |
| ! | TATTCATCAGTTTTCGTTTC+AGG | - | chr4_3:67853188-67853207 | None:intergenic | 30.0% |
| TCATTTACATGAAACATGGA+TGG | - | chr4_3:67853237-67853256 | None:intergenic | 30.0% | |
| ATCCATGTTTCATGTAAATG+AGG | + | chr4_3:67853236-67853255 | Msa0657890:intron | 30.0% | |
| ! | TTTTTACGTGTCTATCATGA+AGG | + | chr4_3:67853337-67853356 | Msa0657890:intron | 30.0% |
| ! | TTTTACGTGTCTATCATGAA+GGG | + | chr4_3:67853338-67853357 | Msa0657890:intron | 30.0% |
| GTAAAGTTATTTAGTGCGAA+TGG | - | chr4_3:67853417-67853436 | None:intergenic | 30.0% | |
| GTAAAGTTATTTAGTGCGAA+TGG | - | chr4_3:67853417-67853436 | None:intergenic | 30.0% | |
| ATAGTAAAGAGGAAGATGAT+TGG | - | chr4_3:67853640-67853659 | None:intergenic | 30.0% | |
| GGAAAAAGATGATAGTAAAG+AGG | - | chr4_3:67853651-67853670 | None:intergenic | 30.0% | |
| !! | GATAGGAATTGGAAAGTATT+TGG | - | chr4_3:67853830-67853849 | None:intergenic | 30.0% |
| CGGAAAATGTTAATTAGTAG+AGG | + | chr4_3:67853882-67853901 | Msa0657890:intron | 30.0% | |
| CTATCTTACTTTGAACTAGA+TGG | - | chr4_3:67853985-67854004 | None:intergenic | 30.0% | |
| GATATTCAACATATACCATG+AGG | - | chr4_3:67854295-67854314 | None:intergenic | 30.0% | |
| ! | AAGAGGAATTTTGTCCTTTT+TGG | - | chr4_3:67854326-67854345 | None:intergenic | 30.0% |
| TGTTGTAGCACATGTTATAT+TGG | - | chr4_3:67854354-67854373 | None:intergenic | 30.0% | |
| TTCAGTTAACGCTTTCTTAA+AGG | + | chr4_3:67854781-67854800 | Msa0657890:CDS | 30.0% | |
| TCAGTTAACGCTTTCTTAAA+GGG | + | chr4_3:67854782-67854801 | Msa0657890:CDS | 30.0% | |
| ! | TTACCAGAACTAAATTTTGG+TGG | - | chr4_3:67855024-67855043 | None:intergenic | 30.0% |
| TAGAAAATGCAGGATTACTA+GGG | - | chr4_3:67855161-67855180 | None:intergenic | 30.0% | |
| ATAGAAAATGCAGGATTACT+AGG | - | chr4_3:67855162-67855181 | None:intergenic | 30.0% | |
| AAATTTGTGCCTCAGATATT+AGG | + | chr4_3:67855229-67855248 | Msa0657890:intron | 30.0% | |
| !!! | TTTCCTACTACCTTTTTTCT+TGG | - | chr4_3:67855324-67855343 | None:intergenic | 30.0% |
| AATGTTTATTGGAAGGAACT+TGG | + | chr4_3:67855439-67855458 | Msa0657890:CDS | 30.0% | |
| ATGATACTTGCATTACAGAT+AGG | + | chr4_3:67855484-67855503 | Msa0657890:CDS | 30.0% | |
| TACTCATGCATACAAGAATA+TGG | - | chr4_3:67855574-67855593 | None:intergenic | 30.0% | |
| TTGGATATTGAATCTACTTC+AGG | + | chr4_3:67855664-67855683 | Msa0657890:CDS | 30.0% | |
| TATATATATGGCCTCAAAGT+TGG | + | chr4_3:67855687-67855706 | Msa0657890:intron | 30.0% | |
| ATATATATGGCCTCAAAGTT+GGG | + | chr4_3:67855688-67855707 | Msa0657890:intron | 30.0% | |
| CATATGCAAGTTCAATTATG+TGG | - | chr4_3:67855854-67855873 | Msa0657900:three_prime_UTR | 30.0% | |
| CACATAATTGAACTTGCATA+TGG | + | chr4_3:67855852-67855871 | Msa0657890:intron | 30.0% | |
| TAGAAAGGTTAAAGTGTACT+CGG | - | chr4_3:67855923-67855942 | Msa0657900:three_prime_UTR | 30.0% | |
| AGTACACTTTAACCTTTCTA+AGG | + | chr4_3:67855923-67855942 | Msa0657890:intron | 30.0% | |
| CTATGCATGGATCAAAAAGA+AGG | + | chr4_3:67849795-67849814 | Msa0657890:CDS | 35.0% | |
| CAAAAAGAAGGGACATGAAA+TGG | + | chr4_3:67849807-67849826 | Msa0657890:CDS | 35.0% | |
| GACATGAAATGGGTAATTCT+CGG | + | chr4_3:67849818-67849837 | Msa0657890:CDS | 35.0% | |
| !! | GGATTTCTAGGATCATCATT+TGG | + | chr4_3:67850347-67850366 | Msa0657890:CDS | 35.0% |
| AATAAAATGCATGTGTGCTG+TGG | + | chr4_3:67850623-67850642 | Msa0657890:intron | 35.0% | |
| TTCTGAATGTTATGAGGCAA+TGG | - | chr4_3:67850667-67850686 | None:intergenic | 35.0% | |
| AATAAGAGAAAAGCGGACAA+AGG | + | chr4_3:67851065-67851084 | Msa0657890:intron | 35.0% | |
| CAGGTTAAGCATACCATAAA+AGG | - | chr4_3:67851753-67851772 | None:intergenic | 35.0% | |
| AAGCTAGGTTTGATTATGAC+AGG | + | chr4_3:67851870-67851889 | Msa0657890:intron | 35.0% | |
| AGCTAGGTTTGATTATGACA+GGG | + | chr4_3:67851871-67851890 | Msa0657890:intron | 35.0% | |
| !!! | GGTAGTCTAATGGTTTTGTA+AGG | + | chr4_3:67851983-67852002 | Msa0657890:intron | 35.0% |
| !! | GGTTTTGTAAGGTAGTCTAA+TGG | + | chr4_3:67851994-67852013 | Msa0657890:intron | 35.0% |
| !!! | GGTAGTCTAATGGTTTTGTA+AGG | + | chr4_3:67851983-67852002 | Msa0657890:intron | 35.0% |
| ! | GTTTTGTAAGGTAGTCTGTA+AGG | + | chr4_3:67852054-67852073 | Msa0657890:intron | 35.0% |
| TAGTCTGTAAGGTAGTCTAA+TGG | + | chr4_3:67852065-67852084 | Msa0657890:intron | 35.0% | |
| AGTCTGTAAGGTAGTCTAAT+GGG | + | chr4_3:67852066-67852085 | Msa0657890:intron | 35.0% | |
| !!! | GGTAGTCTAATGGTTTTGTA+AGG | + | chr4_3:67851983-67852002 | Msa0657890:intron | 35.0% |
| !! | GGTTTTGTAAGGTAGTCTAA+TGG | + | chr4_3:67851994-67852013 | Msa0657890:intron | 35.0% |
| !!! | GGTAGTCTAATGGTTTTGTA+AGG | + | chr4_3:67851983-67852002 | Msa0657890:intron | 35.0% |
| ! | GTTTTGTAAGGTAGTCTGTA+AGG | + | chr4_3:67852054-67852073 | Msa0657890:intron | 35.0% |
| GTAGTGTAAGGTAGTCTAAT+GGG | + | chr4_3:67852223-67852242 | Msa0657890:intron | 35.0% | |
| TTACATGAAACATGGATGGT+TGG | - | chr4_3:67853233-67853252 | None:intergenic | 35.0% | |
| AGCCTCATTTACATGAAACA+TGG | - | chr4_3:67853241-67853260 | None:intergenic | 35.0% | |
| CATTTGAGGAATACATGAAG+AGG | - | chr4_3:67853306-67853325 | None:intergenic | 35.0% | |
| CTCTTCATGTATTCCTCAAA+TGG | + | chr4_3:67853304-67853323 | Msa0657890:intron | 35.0% | |
| TTCATGTATTCCTCAAATGG+AGG | + | chr4_3:67853307-67853326 | Msa0657890:intron | 35.0% | |
| AAATATCACACCTCCATTTG+AGG | - | chr4_3:67853320-67853339 | None:intergenic | 35.0% | |
| AAAGAGGAAGATGATTGGAA+GGG | - | chr4_3:67853635-67853654 | None:intergenic | 35.0% | |
| TAAAGAGGAAGATGATTGGA+AGG | - | chr4_3:67853636-67853655 | None:intergenic | 35.0% | |
| CTGGTCCAAGAAAATAAGAT+AGG | - | chr4_3:67853847-67853866 | None:intergenic | 35.0% | |
| !!! | ACCAGTGCATGCTTTTTTAT+CGG | + | chr4_3:67853862-67853881 | Msa0657890:intron | 35.0% |
| TCGGTAATCATGAAACACAT+TGG | - | chr4_3:67854255-67854274 | None:intergenic | 35.0% | |
| AATGTGTTTCATGATTACCG+AGG | + | chr4_3:67854254-67854273 | Msa0657890:intron | 35.0% | |
| ATTCAACATATACCATGAGG+TGG | - | chr4_3:67854292-67854311 | None:intergenic | 35.0% | |
| AATCATAGTCAATCACAGGA+AGG | - | chr4_3:67854547-67854566 | None:intergenic | 35.0% | |
| GCTAAATCATAGTCAATCAC+AGG | - | chr4_3:67854551-67854570 | None:intergenic | 35.0% | |
| TTCCAACCAATGTTAATGCT+TGG | + | chr4_3:67854578-67854597 | Msa0657890:CDS | 35.0% | |
| TTCCAAGCATTAACATTGGT+TGG | - | chr4_3:67854583-67854602 | None:intergenic | 35.0% | |
| CTGATTCCAAGCATTAACAT+TGG | - | chr4_3:67854587-67854606 | None:intergenic | 35.0% | |
| TTAATGCTTGGAATCAGTCT+TGG | + | chr4_3:67854590-67854609 | Msa0657890:CDS | 35.0% | |
| !! | TCAATCTCATTTTTCCTGAC+TGG | + | chr4_3:67854621-67854640 | Msa0657890:CDS | 35.0% |
| AAAGTTGTTATCATCCAGTC+AGG | - | chr4_3:67854638-67854657 | None:intergenic | 35.0% | |
| ! | AGTTTTCGATATATGGGAAC+AGG | + | chr4_3:67854755-67854774 | Msa0657890:intron | 35.0% |
| !! | TCTTAAAGGGTGTTAACACT+TGG | + | chr4_3:67854795-67854814 | Msa0657890:CDS | 35.0% |
| ! | TAGCCACCAAAATTTAGTTC+TGG | + | chr4_3:67855018-67855037 | Msa0657890:intron | 35.0% |
| ATCTTCTGTCCTAATATCTG+AGG | - | chr4_3:67855241-67855260 | None:intergenic | 35.0% | |
| CTACACATGATCTTCAAGAA+GGG | + | chr4_3:67855262-67855281 | Msa0657890:CDS | 35.0% | |
| TACACATGATCTTCAAGAAG+GGG | + | chr4_3:67855263-67855282 | Msa0657890:CDS | 35.0% | |
| CTACCAAGAAAAAAGGTAGT+AGG | + | chr4_3:67855318-67855337 | Msa0657890:intron | 35.0% | |
| AAAAGATGCCATGAATGTGT+AGG | + | chr4_3:67855402-67855421 | Msa0657890:intron | 35.0% | |
| AACAGAAACCTACACATTCA+TGG | - | chr4_3:67855413-67855432 | None:intergenic | 35.0% | |
| ! | TTGGACTTCTTTTCTCTGTT+TGG | + | chr4_3:67855458-67855477 | Msa0657890:CDS | 35.0% |
| CTTGTATGCATGAGTAAACA+AGG | + | chr4_3:67855578-67855597 | Msa0657890:intron | 35.0% | |
| ! | CAACTTGCTCTGTGATATAT+TGG | + | chr4_3:67855645-67855664 | Msa0657890:CDS | 35.0% |
| ATTCTTAAGACCCAACTTTG+AGG | - | chr4_3:67855701-67855720 | None:intergenic | 35.0% | |
| !! | TACATGATGATGGCTATGCA+TGG | + | chr4_3:67849782-67849801 | Msa0657890:exon | 40.0% |
| AGCATGAATATCAACCCCTT+TGG | - | chr4_3:67849948-67849967 | None:intergenic | 40.0% | |
| ATGATCTTTGTGGTGTATCC+AGG | + | chr4_3:67850283-67850302 | Msa0657890:intron | 40.0% | |
| TGATCTTTGTGGTGTATCCA+GGG | + | chr4_3:67850284-67850303 | Msa0657890:intron | 40.0% | |
| TGTATCCAGGGGATGAAATT+TGG | + | chr4_3:67850296-67850315 | Msa0657890:intron | 40.0% | |
| GGCACCATAATTGGATTTCT+AGG | + | chr4_3:67850335-67850354 | Msa0657890:CDS | 40.0% | |
| CCAACAATTAGGGTAAGCAT+GGG | - | chr4_3:67850410-67850429 | None:intergenic | 40.0% | |
| TCCAACAATTAGGGTAAGCA+TGG | - | chr4_3:67850411-67850430 | None:intergenic | 40.0% | |
| TGAATGTTATGAGGCAATGG+AGG | - | chr4_3:67850664-67850683 | None:intergenic | 40.0% | |
| !!! | TATTTTTGGGTCCTGCTAAC+CGG | - | chr4_3:67851789-67851808 | None:intergenic | 40.0% |
| CATTGAGTTTCGGATGAGTT+GGG | - | chr4_3:67851828-67851847 | None:intergenic | 40.0% | |
| ACATTGAGTTTCGGATGAGT+TGG | - | chr4_3:67851829-67851848 | None:intergenic | 40.0% | |
| AACTCATCCGAAACTCAATG+TGG | + | chr4_3:67851828-67851847 | Msa0657890:intron | 40.0% | |
| ACTCATCCGAAACTCAATGT+GGG | + | chr4_3:67851829-67851848 | Msa0657890:intron | 40.0% | |
| !! | AGGTAGTCTAATGGGTTAGA+AGG | + | chr4_3:67852003-67852022 | Msa0657890:intron | 40.0% |
| GTAGTCTGTAAGGTAGTGTA+AGG | + | chr4_3:67852211-67852230 | Msa0657890:intron | 40.0% | |
| GGTAGTGTAAGGTAGTCTAA+TGG | + | chr4_3:67852222-67852241 | Msa0657890:intron | 40.0% | |
| AAGTGAATAAGTGGGGATTC+CGG | + | chr4_3:67852262-67852281 | Msa0657890:intron | 40.0% | |
| ATATGTGAAAATTGGGCCAG+TGG | + | chr4_3:67853767-67853786 | Msa0657890:intron | 40.0% | |
| ! | TCCGATAAAAAAGCATGCAC+TGG | - | chr4_3:67853866-67853885 | None:intergenic | 40.0% |
| TACTTTGAACTAGATGGGAG+TGG | - | chr4_3:67853979-67853998 | None:intergenic | 40.0% | |
| ! | GCATTTTTCTTGTGCAGATG+CGG | - | chr4_3:67854031-67854050 | None:intergenic | 40.0% |
| TGGTGTGAAGTCATGATTAC+AGG | + | chr4_3:67854467-67854486 | Msa0657890:intron | 40.0% | |
| TGTGAAGTCATGATTACAGG+TGG | + | chr4_3:67854470-67854489 | Msa0657890:intron | 40.0% | |
| GCTACACATGATCTTCAAGA+AGG | + | chr4_3:67855261-67855280 | Msa0657890:CDS | 40.0% | |
| TTGTGGTCATCTCCTTAGAA+AGG | - | chr4_3:67855938-67855957 | Msa0657900:three_prime_UTR | 40.0% | |
| ! | TGGGATCAAATTGAGTGTTG+TGG | - | chr4_3:67855955-67855974 | Msa0657900:three_prime_UTR | 40.0% |
| GGGTAATTCTCGGAAGATCA+AGG | + | chr4_3:67849828-67849847 | Msa0657890:CDS | 45.0% | |
| !!! | CTGGTGTTGCTTTTTGGTCA+GGG | - | chr4_3:67849913-67849932 | None:intergenic | 45.0% |
| !!! | TGGAAGCTGGTGTTGCTTTT+TGG | - | chr4_3:67849919-67849938 | None:intergenic | 45.0% |
| CAGCTTCCAATGAGACCAAA+GGG | + | chr4_3:67849930-67849949 | Msa0657890:CDS | 45.0% | |
| AGCTTCCAATGAGACCAAAG+GGG | + | chr4_3:67849931-67849950 | Msa0657890:CDS | 45.0% | |
| ATCAACCCCTTTGGTCTCAT+TGG | - | chr4_3:67849939-67849958 | None:intergenic | 45.0% | |
| GATCTTTGTGGTGTATCCAG+GGG | + | chr4_3:67850285-67850304 | Msa0657890:intron | 45.0% | |
| TCCAGGGGATGAAATTTGGT+TGG | + | chr4_3:67850300-67850319 | Msa0657890:intron | 45.0% | |
| TCCAACCAAATTTCATCCCC+TGG | - | chr4_3:67850304-67850323 | None:intergenic | 45.0% | |
| GGATCATCATTTGGCACTGT+AGG | + | chr4_3:67850356-67850375 | Msa0657890:CDS | 45.0% | |
| TCATCATTTGGCACTGTAGG+AGG | + | chr4_3:67850359-67850378 | Msa0657890:CDS | 45.0% | |
| CCCATGCTTACCCTAATTGT+TGG | + | chr4_3:67850407-67850426 | Msa0657890:CDS | 45.0% | |
| GTGTGCTGTGGATGATACAT+AGG | + | chr4_3:67850635-67850654 | Msa0657890:intron | 45.0% | |
| ATATCCTTAACCAATGCCCC+GGG | - | chr4_3:67851638-67851657 | None:intergenic | 45.0% | |
| CATATCCTTAACCAATGCCC+CGG | - | chr4_3:67851639-67851658 | None:intergenic | 45.0% | |
| AGTCTGCCCACATTGAGTTT+CGG | - | chr4_3:67851838-67851857 | None:intergenic | 45.0% | |
| ACCCAAAGAGGTTGCAAGTA+AGG | + | chr4_3:67851897-67851916 | Msa0657890:intron | 45.0% | |
| GCCTTACTTGCAACCTCTTT+GGG | - | chr4_3:67851901-67851920 | None:intergenic | 45.0% | |
| TGCCTTACTTGCAACCTCTT+TGG | - | chr4_3:67851902-67851921 | None:intergenic | 45.0% | |
| AGTGAATAAGTGGGGATTCC+GGG | + | chr4_3:67852263-67852282 | Msa0657890:intron | 45.0% | |
| GCATGCATCGTTATATGCAG+GGG | - | chr4_3:67852302-67852321 | None:intergenic | 45.0% | |
| GGCATGCATCGTTATATGCA+GGG | - | chr4_3:67852303-67852322 | None:intergenic | 45.0% | |
| TGCATTCCAATGAGAGTCGA+GGG | - | chr4_3:67853677-67853696 | None:intergenic | 45.0% | |
| CAGTATGCCACATTGAGTGA+CGG | - | chr4_3:67853802-67853821 | None:intergenic | 45.0% | |
| ! | AAATGACTATGTAGGGCGCT+GGG | - | chr4_3:67854185-67854204 | None:intergenic | 45.0% |
| AAAATGACTATGTAGGGCGC+TGG | - | chr4_3:67854186-67854205 | None:intergenic | 45.0% | |
| ACTCTCATACTTCCACCTCA+TGG | + | chr4_3:67854277-67854296 | Msa0657890:intron | 45.0% | |
| GTCAATCACAGGAAGGTCAA+GGG | - | chr4_3:67854540-67854559 | None:intergenic | 45.0% | |
| AGTCAATCACAGGAAGGTCA+AGG | - | chr4_3:67854541-67854560 | None:intergenic | 45.0% | |
| TACATCCCTGCTACAATTCC+AGG | + | chr4_3:67854926-67854945 | Msa0657890:intron | 45.0% | |
| AGCTTCCTGGAATTGTAGCA+GGG | - | chr4_3:67854934-67854953 | None:intergenic | 45.0% | |
| TAGCTTCCTGGAATTGTAGC+AGG | - | chr4_3:67854935-67854954 | None:intergenic | 45.0% | |
| GCTACAATTCCAGGAAGCTA+AGG | + | chr4_3:67854935-67854954 | Msa0657890:intron | 45.0% | |
| GTGAATTGTCCTTAGCTTCC+TGG | - | chr4_3:67854947-67854966 | None:intergenic | 45.0% | |
| !! | TATATAAATATATAGATATA+CGG | - | chr4_3:67849764-67849783 | None:intergenic | 5.0% |
| !!! | TATTTTTTATTTTTTTTGTA+AGG | + | chr4_3:67851962-67851981 | Msa0657890:intron | 5.0% |
| !!! | TTTTTTTTATTTTTTTTGTA+AGG | + | chr4_3:67852109-67852128 | Msa0657890:intron | 5.0% |
| !!! | ATTAAAAAATAATTTTGAAT+CGG | - | chr4_3:67852354-67852373 | None:intergenic | 5.0% |
| !! | ACAAAAATAAAAATAATTTA+GGG | + | chr4_3:67853597-67853616 | Msa0657890:intron | 5.0% |
| !!! | GCTGGTGTTGCTTTTTGGTC+AGG | - | chr4_3:67849914-67849933 | None:intergenic | 50.0% |
| CCTTTGGTCTCATTGGAAGC+TGG | - | chr4_3:67849932-67849951 | None:intergenic | 50.0% | |
| CCAGCTTCCAATGAGACCAA+AGG | + | chr4_3:67849929-67849948 | Msa0657890:CDS | 50.0% | |
| ! | TTTGGCACTGTAGGAGGTGT+TGG | + | chr4_3:67850365-67850384 | Msa0657890:CDS | 50.0% |
| TATCCTTAACCAATGCCCCG+GGG | - | chr4_3:67851637-67851656 | None:intergenic | 50.0% | |
| ! | TCGGATGAGTTGGGTGTTCA+AGG | - | chr4_3:67851819-67851838 | None:intergenic | 50.0% |
| GCAAGTAAGGCAGATGCCTT+AGG | + | chr4_3:67851910-67851929 | Msa0657890:intron | 50.0% | |
| GTGAATAAGTGGGGATTCCG+GGG | + | chr4_3:67852264-67852283 | Msa0657890:intron | 50.0% | |
| ATCGTTATATGCAGGGGTCG+GGG | - | chr4_3:67852296-67852315 | None:intergenic | 50.0% | |
| CATCGTTATATGCAGGGGTC+GGG | - | chr4_3:67852297-67852316 | None:intergenic | 50.0% | |
| GCATCGTTATATGCAGGGGT+CGG | - | chr4_3:67852298-67852317 | None:intergenic | 50.0% | |
| GGGCATGCATCGTTATATGC+AGG | - | chr4_3:67852304-67852323 | None:intergenic | 50.0% | |
| TGAGCATAGCTCAGTTGGCA+GGG | - | chr4_3:67852325-67852344 | None:intergenic | 50.0% | |
| TGCCAACTGAGCTATGCTCA+CGG | + | chr4_3:67852325-67852344 | Msa0657890:intron | 50.0% | |
| TCCAATGAGAGTCGAGGGTT+GGG | - | chr4_3:67853672-67853691 | None:intergenic | 50.0% | |
| TTCCAATGAGAGTCGAGGGT+TGG | - | chr4_3:67853673-67853692 | None:intergenic | 50.0% | |
| CTGCATTCCAATGAGAGTCG+AGG | - | chr4_3:67853678-67853697 | None:intergenic | 50.0% | |
| CTCGACTCTCATTGGAATGC+AGG | + | chr4_3:67853676-67853695 | Msa0657890:intron | 50.0% | |
| ACATTGAGTGACGGCCATCT+AGG | - | chr4_3:67853793-67853812 | None:intergenic | 50.0% | |
| TAGATGGCCGTCACTCAATG+TGG | + | chr4_3:67853792-67853811 | Msa0657890:intron | 50.0% | |
| CTTAGGCGCAATGGCTTCTA+GGG | - | chr4_3:67854056-67854075 | None:intergenic | 50.0% | |
| ACTTAGGCGCAATGGCTTCT+AGG | - | chr4_3:67854057-67854076 | None:intergenic | 50.0% | |
| TAGAAGCCATTGCGCCTAAG+TGG | + | chr4_3:67854056-67854075 | Msa0657890:intron | 50.0% | |
| AGAAGCCATTGCGCCTAAGT+GGG | + | chr4_3:67854057-67854076 | Msa0657890:intron | 50.0% | |
| TCATTGTCCTTCTTGCGTCG+CGG | - | chr4_3:67854092-67854111 | None:intergenic | 50.0% | |
| !! | AAGGCAATGGGCTAGACACA+TGG | - | chr4_3:67854116-67854135 | None:intergenic | 50.0% |
| ATGTGTCTAGCCCATTGCCT+TGG | + | chr4_3:67854115-67854134 | Msa0657890:intron | 50.0% | |
| ! | GGTGGAAGTATGAGAGTCCT+CGG | - | chr4_3:67854274-67854293 | None:intergenic | 50.0% |
| GTCATGATTACAGGTGGAGC+AGG | + | chr4_3:67854476-67854495 | Msa0657890:intron | 50.0% | |
| TCACAGGAAGGTCAAGGGTT+GGG | - | chr4_3:67854535-67854554 | None:intergenic | 50.0% | |
| ATCACAGGAAGGTCAAGGGT+TGG | - | chr4_3:67854536-67854555 | None:intergenic | 50.0% | |
| CTTGCACGCATACACACTCG+AGG | - | chr4_3:67851311-67851330 | None:intergenic | 55.0% | |
| GAAATGCTAACTGGTGCCCC+CGG | + | chr4_3:67851617-67851636 | Msa0657890:intron | 55.0% | |
| AAATGCTAACTGGTGCCCCC+GGG | + | chr4_3:67851618-67851637 | Msa0657890:intron | 55.0% | |
| ATCCTTAACCAATGCCCCGG+GGG | - | chr4_3:67851636-67851655 | None:intergenic | 55.0% | |
| GGTATGCTTAACCTGTGCCC+CGG | + | chr4_3:67851758-67851777 | Msa0657890:intron | 55.0% | |
| GTATGCTTAACCTGTGCCCC+GGG | + | chr4_3:67851759-67851778 | Msa0657890:intron | 55.0% | |
| ATGACAGGGTCGACCCAAAG+AGG | + | chr4_3:67851885-67851904 | Msa0657890:intron | 55.0% | |
| GAGCATAGCTCAGTTGGCAG+GGG | - | chr4_3:67852324-67852343 | None:intergenic | 55.0% | |
| GTGAGCATAGCTCAGTTGGC+AGG | - | chr4_3:67852326-67852345 | None:intergenic | 55.0% | |
| GCCAACTGAGCTATGCTCAC+GGG | + | chr4_3:67852326-67852345 | Msa0657890:intron | 55.0% | |
| ACCCGTGAGCATAGCTCAGT+TGG | - | chr4_3:67852330-67852349 | None:intergenic | 55.0% | |
| TCCCAACCCTCGACTCTCAT+TGG | + | chr4_3:67853668-67853687 | Msa0657890:intron | 55.0% | |
| AATTGGGCCAGTGGCCTAGA+TGG | + | chr4_3:67853776-67853795 | Msa0657890:intron | 55.0% | |
| CCTTCTTGCGTCGCGGTATT+GGG | - | chr4_3:67854085-67854104 | None:intergenic | 55.0% | |
| TCCTTCTTGCGTCGCGGTAT+TGG | - | chr4_3:67854086-67854105 | None:intergenic | 55.0% | |
| ! | TAGCCCATTGCCTTGGCTCT+TGG | + | chr4_3:67854122-67854141 | Msa0657890:intron | 55.0% |
| CTGCCAAGAGCCAAGGCAAT+GGG | - | chr4_3:67854128-67854147 | None:intergenic | 55.0% | |
| ATTCTGCCTGCCAAGAGCCA+AGG | - | chr4_3:67854135-67854154 | None:intergenic | 55.0% | |
| GGCAGAATCCCCGTGTTTGA+CGG | + | chr4_3:67854147-67854166 | Msa0657890:intron | 55.0% | |
| !! | GGCACTGTAGGAGGTGTTGG+CGG | + | chr4_3:67850368-67850387 | Msa0657890:CDS | 60.0% |
| !! | GCACTGTAGGAGGTGTTGGC+GGG | + | chr4_3:67850369-67850388 | Msa0657890:CDS | 60.0% |
| !! | CACTGTAGGAGGTGTTGGCG+GGG | + | chr4_3:67850370-67850389 | Msa0657890:CDS | 60.0% |
| !! | ACTGTAGGAGGTGTTGGCGG+GGG | + | chr4_3:67850371-67850390 | Msa0657890:CDS | 60.0% |
| AATGCTAACTGGTGCCCCCG+GGG | + | chr4_3:67851619-67851638 | Msa0657890:intron | 60.0% | |
| ! | GCGGTATTGGGCACCCACTT+AGG | - | chr4_3:67854073-67854092 | None:intergenic | 60.0% |
| CCCAATACCGCGACGCAAGA+AGG | + | chr4_3:67854082-67854101 | Msa0657890:intron | 60.0% | |
| CCTGCCAAGAGCCAAGGCAA+TGG | - | chr4_3:67854129-67854148 | None:intergenic | 60.0% | |
| ! | CCATTGCCTTGGCTCTTGGC+AGG | + | chr4_3:67854126-67854145 | Msa0657890:intron | 60.0% |
| TGGACAGGCCGTCAAACACG+GGG | - | chr4_3:67854158-67854177 | None:intergenic | 60.0% | |
| CTGGACAGGCCGTCAAACAC+GGG | - | chr4_3:67854159-67854178 | None:intergenic | 60.0% | |
| CCTGGACAGGCCGTCAAACA+CGG | - | chr4_3:67854160-67854179 | None:intergenic | 60.0% | |
| !! | TGCCCCCGGGGCATTGGTTA+AGG | + | chr4_3:67851631-67851650 | Msa0657890:intron | 65.0% |
| TCCTGCTAACCGGTGCTCCC+GGG | - | chr4_3:67851779-67851798 | None:intergenic | 65.0% | |
| GTCCTGCTAACCGGTGCTCC+CGG | - | chr4_3:67851780-67851799 | None:intergenic | 65.0% | |
| GTGACGGCCATCTAGGCCAC+TGG | - | chr4_3:67853786-67853805 | None:intergenic | 65.0% | |
| GGGCACCCACTTAGGCGCAA+TGG | - | chr4_3:67854065-67854084 | None:intergenic | 65.0% | |
| CCGTGTTTGACGGCCTGTCC+AGG | + | chr4_3:67854157-67854176 | Msa0657890:intron | 65.0% | |
| !! | TATGTAGGGCGCTGGGTGCC+TGG | - | chr4_3:67854178-67854197 | None:intergenic | 65.0% |
| !! | GTAGGAGGTGTTGGCGGGGG+TGG | + | chr4_3:67850374-67850393 | Msa0657890:CDS | 70.0% |
| AACTGGTGCCCCCGGGGCAT+TGG | + | chr4_3:67851625-67851644 | Msa0657890:intron | 70.0% | |
| ! | AACCTGTGCCCCGGGAGCAC+CGG | + | chr4_3:67851767-67851786 | Msa0657890:intron | 70.0% |
| CCTGCTAACCGGTGCTCCCG+GGG | - | chr4_3:67851778-67851797 | None:intergenic | 70.0% | |
| AGGGGTCGGGGTTCGAACCC+CGG | - | chr4_3:67852284-67852303 | None:intergenic | 70.0% | |
| AACCGGTGCTCCCGGGGCAC+AGG | - | chr4_3:67851772-67851791 | None:intergenic | 75.0% | |
| !! | CCCCGGGAGCACCGGTTAGC+AGG | + | chr4_3:67851775-67851794 | Msa0657890:intron | 75.0% |
| !! | AGGGCGCTGGGTGCCTGGAC+AGG | - | chr4_3:67854173-67854192 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 67849746 | 67855986 | 67849746 | ID=Msa0657890;Name=Msa0657890 |
| chr4_3 | mRNA | 67849746 | 67855986 | 67849746 | ID=Msa0657890-mRNA-1;Parent=Msa0657890;Name=Msa0657890-mRNA-1;_AED=0.15;_eAED=0.15;_QI=39|0.75|0.66|0.88|0.87|0.88|9|0|310 |
| chr4_3 | exon | 67849746 | 67849994 | 67849746 | ID=Msa0657890-mRNA-1:exon:19560;Parent=Msa0657890-mRNA-1 |
| chr4_3 | exon | 67850305 | 67850464 | 67850305 | ID=Msa0657890-mRNA-1:exon:19561;Parent=Msa0657890-mRNA-1 |
| chr4_3 | exon | 67854477 | 67854677 | 67854477 | ID=Msa0657890-mRNA-1:exon:19562;Parent=Msa0657890-mRNA-1 |
| chr4_3 | exon | 67854777 | 67854841 | 67854777 | ID=Msa0657890-mRNA-1:exon:19563;Parent=Msa0657890-mRNA-1 |
| chr4_3 | exon | 67854948 | 67854975 | 67854948 | ID=Msa0657890-mRNA-1:exon:19564;Parent=Msa0657890-mRNA-1 |
| chr4_3 | exon | 67855244 | 67855332 | 67855244 | ID=Msa0657890-mRNA-1:exon:19565;Parent=Msa0657890-mRNA-1 |
| chr4_3 | exon | 67855424 | 67855510 | 67855424 | ID=Msa0657890-mRNA-1:exon:19566;Parent=Msa0657890-mRNA-1 |
| chr4_3 | exon | 67855635 | 67855685 | 67855635 | ID=Msa0657890-mRNA-1:exon:19567;Parent=Msa0657890-mRNA-1 |
| chr4_3 | exon | 67855945 | 67855986 | 67855945 | ID=Msa0657890-mRNA-1:exon:19568;Parent=Msa0657890-mRNA-1 |
| chr4_3 | five_prime_UTR | 67849746 | 67849784 | 67849746 | ID=Msa0657890-mRNA-1:five_prime_utr;Parent=Msa0657890-mRNA-1 |
| chr4_3 | CDS | 67849785 | 67849994 | 67849785 | ID=Msa0657890-mRNA-1:cds;Parent=Msa0657890-mRNA-1 |
| chr4_3 | CDS | 67850305 | 67850464 | 67850305 | ID=Msa0657890-mRNA-1:cds;Parent=Msa0657890-mRNA-1 |
| chr4_3 | CDS | 67854477 | 67854677 | 67854477 | ID=Msa0657890-mRNA-1:cds;Parent=Msa0657890-mRNA-1 |
| chr4_3 | CDS | 67854777 | 67854841 | 67854777 | ID=Msa0657890-mRNA-1:cds;Parent=Msa0657890-mRNA-1 |
| chr4_3 | CDS | 67854948 | 67854975 | 67854948 | ID=Msa0657890-mRNA-1:cds;Parent=Msa0657890-mRNA-1 |
| chr4_3 | CDS | 67855244 | 67855332 | 67855244 | ID=Msa0657890-mRNA-1:cds;Parent=Msa0657890-mRNA-1 |
| chr4_3 | CDS | 67855424 | 67855510 | 67855424 | ID=Msa0657890-mRNA-1:cds;Parent=Msa0657890-mRNA-1 |
| chr4_3 | CDS | 67855635 | 67855685 | 67855635 | ID=Msa0657890-mRNA-1:cds;Parent=Msa0657890-mRNA-1 |
| chr4_3 | CDS | 67855945 | 67855986 | 67855945 | ID=Msa0657890-mRNA-1:cds;Parent=Msa0657890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
