AlfalfaGEDB | Msa0701770

M. sativa cultivar zhongmu-4 / Msa0701770

KEGG: -
GO: -
PFAM: PF01925.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0701770	XP_003629897.2	94.387	481	21	2	1	475	1	481	0.0	797

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0701770	sp\|Q8L7A0\|TAUE3_ARATH	65.375	413	134	4	65	472	67	475	3.63e-179	513

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0701770	B7FND1	94.387	481	21	2	1	475	1	481	0.0	797

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006700	Msa0701770	0.820973	5.168070e-53	-8.615850e-47
Msa0020630	Msa0701770	0.811046	8.514994e-51	-8.615850e-47
Msa0022640	Msa0701770	0.804433	2.165132e-49	-8.615850e-47
Msa0030030	Msa0701770	0.805285	1.436863e-49	-8.615850e-47
Msa0036150	Msa0701770	0.818908	1.533479e-52	-8.615850e-47
Msa0038310	Msa0701770	0.808695	2.729452e-50	-8.615850e-47
Msa0044100	Msa0701770	0.813664	2.282221e-51	-8.615850e-47
Msa0051100	Msa0701770	0.820555	6.449174e-53	-8.615850e-47
Msa0055280	Msa0701770	0.821125	4.768358e-53	-8.615850e-47
Msa0088550	Msa0701770	0.809087	2.249875e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0701770	MtrunA17_Chr8g0380211	94.387	481	21	2	1	475	1	481	0.0	797
Msa0701770	MtrunA17_Chr3g0139541	59.283	474	163	6	20	472	5	469	9.57e-179	509
Msa0701770	MtrunA17_Chr8g0380191	78.063	351	33	2	125	475	14	320	1.30e-172	488
Msa0701770	MtrunA17_Chr8g0373471	62.319	414	147	4	65	474	62	470	5.65e-168	481
Msa0701770	MtrunA17_Chr5g0403901	57.576	462	174	6	21	469	16	468	6.69e-155	448
Msa0701770	MtrunA17_Chr1g0157751	51.754	456	205	5	24	469	5	455	2.42e-141	413
Msa0701770	MtrunA17_Chr7g0265481	48.552	449	204	6	39	470	22	460	6.39e-120	358
Msa0701770	MtrunA17_Chr1g0179621	46.635	416	201	4	69	470	55	463	3.26e-107	326
Msa0701770	MtrunA17_Chr2g0280401	29.563	389	243	10	103	469	87	466	1.56e-36	140
Msa0701770	MtrunA17_Chr3g0139621	55.462	119	31	1	304	400	27	145	4.30e-26	103

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0701770	AT2G25737.1	65.375	413	134	4	65	472	67	475	3.69e-180	513
Msa0701770	AT2G25737.2	62.783	309	106	4	65	368	67	371	6.67e-121	358
Msa0701770	AT2G36630.1	45.652	460	222	5	25	470	12	457	1.22e-115	348
Msa0701770	AT1G11540.2	30.340	412	249	11	79	469	56	450	1.13e-36	140
Msa0701770	AT1G11540.1	30.208	384	230	11	107	469	1	367	1.62e-36	138
Msa0701770	AT1G61740.1	28.966	435	255	11	66	469	47	458	5.37e-34	133
Msa0701770	AT4G21250.1	31.566	415	250	9	72	469	52	449	2.81e-32	128
Msa0701770	AT4G21260.1	25.571	438	248	10	24	450	4	374	1.13e-27	114

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Find 114 sgRNAs with CRISPR-Local

Find 450 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAACCCTAATTAAGA+AGG	0.512933	4_4:-73234636	Msa0701770:intron
AAAAGAGTTATAGCTTCCAA+AGG	0.579010	4_4:-73233616	Msa0701770:CDS
AAAAGTACTACATGTGTGGT+TGG	0.547002	4_4:-73232412	Msa0701770:three_prime_UTR
AAAGTTGTTATCATCCAGTC+AGG	0.505433	4_4:+73234821	None:intergenic
AAATCAGCATTTAGGACATA+CGG	0.552529	4_4:-73232389	Msa0701770:three_prime_UTR
AAATTTGTGCCTCAGATATT+AGG	0.252420	4_4:-73234227	Msa0701770:intron
AACAAAGAGTACATGGGATT+TGG	0.369556	4_4:-73232542	Msa0701770:CDS
AAGGACAATTCACAATTAAA+TGG	0.329730	4_4:-73234502	Msa0701770:intron
AAGGAGATCAACAAACAAAT+TGG	0.317337	4_4:-73233597	Msa0701770:CDS
AATCATAGTCAATCACAGGA+AGG	0.653054	4_4:+73234912	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATGCATGGATCAAAAAGAA+GGG	-	chr4_4:73232303-73232322	Msa0701770:three_prime_UTR	30.0%
AAAAAGAAGGGACATGAAAT+GGG	-	chr4_4:73232315-73232334	Msa0701770:three_prime_UTR	30.0%
TTTGGTTGGAGAATTATAGT+AGG	-	chr4_4:73232835-73232854	Msa0701770:intron	30.0%
ATTATAGTAGGCACCATAAT+TGG	-	chr4_4:73232847-73232866	Msa0701770:intron	30.0%
TGATCCTAGAAATCCAATTA+TGG	+	chr4_4:73232863-73232882	None:intergenic	30.0%
TGCATCAAATCCAACAATTA+GGG	+	chr4_4:73232941-73232960	None:intergenic	30.0%
TTGCATCAAATCCAACAATT+AGG	+	chr4_4:73232942-73232961	None:intergenic	30.0%
ATAGCATTCTGAATGTTATG+AGG	+	chr4_4:73233194-73233213	None:intergenic	30.0%
GTTAGTTGAGAGATCTTATT+TGG	-	chr4_4:73233442-73233461	Msa0701770:intron	30.0%
TATGCGTGCAAGTAAATATT+TGG	-	chr4_4:73233839-73233858	Msa0701770:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	73232253	73239556	73232253	ID=Msa0701770;Name=Msa0701770
chr4_4	mRNA	73232253	73239556	73232253	ID=Msa0701770-mRNA-1;Parent=Msa0701770;Name=Msa0701770-mRNA-1;_AED=0.29;_eAED=0.29;_QI=39\|0.90\|0.91\|1\|1\|1\|12\|258\|475
chr4_4	exon	73232253	73232602	73232253	ID=Msa0701770-mRNA-1:exon:22470;Parent=Msa0701770-mRNA-1
chr4_4	exon	73233003	73233143	73233003	ID=Msa0701770-mRNA-1:exon:22469;Parent=Msa0701770-mRNA-1
chr4_4	exon	73233235	73233328	73233235	ID=Msa0701770-mRNA-1:exon:22468;Parent=Msa0701770-mRNA-1
chr4_4	exon	73233471	73233692	73233471	ID=Msa0701770-mRNA-1:exon:22467;Parent=Msa0701770-mRNA-1
chr4_4	exon	73233793	73233843	73233793	ID=Msa0701770-mRNA-1:exon:22466;Parent=Msa0701770-mRNA-1
chr4_4	exon	73233968	73234054	73233968	ID=Msa0701770-mRNA-1:exon:22465;Parent=Msa0701770-mRNA-1
chr4_4	exon	73234146	73234234	73234146	ID=Msa0701770-mRNA-1:exon:22464;Parent=Msa0701770-mRNA-1
chr4_4	exon	73234503	73234530	73234503	ID=Msa0701770-mRNA-1:exon:22463;Parent=Msa0701770-mRNA-1
chr4_4	exon	73234637	73234701	73234637	ID=Msa0701770-mRNA-1:exon:22462;Parent=Msa0701770-mRNA-1
chr4_4	exon	73234801	73234989	73234801	ID=Msa0701770-mRNA-1:exon:22461;Parent=Msa0701770-mRNA-1
chr4_4	exon	73238824	73238983	73238824	ID=Msa0701770-mRNA-1:exon:22460;Parent=Msa0701770-mRNA-1
chr4_4	exon	73239308	73239556	73239308	ID=Msa0701770-mRNA-1:exon:22459;Parent=Msa0701770-mRNA-1
chr4_4	five_prime_UTR	73239518	73239556	73239518	ID=Msa0701770-mRNA-1:five_prime_utr;Parent=Msa0701770-mRNA-1
chr4_4	CDS	73239308	73239517	73239308	ID=Msa0701770-mRNA-1:cds;Parent=Msa0701770-mRNA-1
chr4_4	CDS	73238824	73238983	73238824	ID=Msa0701770-mRNA-1:cds;Parent=Msa0701770-mRNA-1
chr4_4	CDS	73234801	73234989	73234801	ID=Msa0701770-mRNA-1:cds;Parent=Msa0701770-mRNA-1
chr4_4	CDS	73234637	73234701	73234637	ID=Msa0701770-mRNA-1:cds;Parent=Msa0701770-mRNA-1
chr4_4	CDS	73234503	73234530	73234503	ID=Msa0701770-mRNA-1:cds;Parent=Msa0701770-mRNA-1
chr4_4	CDS	73234146	73234234	73234146	ID=Msa0701770-mRNA-1:cds;Parent=Msa0701770-mRNA-1
chr4_4	CDS	73233968	73234054	73233968	ID=Msa0701770-mRNA-1:cds;Parent=Msa0701770-mRNA-1
chr4_4	CDS	73233793	73233843	73233793	ID=Msa0701770-mRNA-1:cds;Parent=Msa0701770-mRNA-1
chr4_4	CDS	73233471	73233692	73233471	ID=Msa0701770-mRNA-1:cds;Parent=Msa0701770-mRNA-1
chr4_4	CDS	73233235	73233328	73233235	ID=Msa0701770-mRNA-1:cds;Parent=Msa0701770-mRNA-1
chr4_4	CDS	73233003	73233143	73233003	ID=Msa0701770-mRNA-1:cds;Parent=Msa0701770-mRNA-1
chr4_4	CDS	73232511	73232602	73232511	ID=Msa0701770-mRNA-1:cds;Parent=Msa0701770-mRNA-1
chr4_4	three_prime_UTR	73232253	73232510	73232253	ID=Msa0701770-mRNA-1:three_prime_utr;Parent=Msa0701770-mRNA-1

Gene Sequence

>Msa0701770

ATGATGATGGCTATGCATGGATCAAAAAGAAGGGACATGAAATGGGTAATTCTCGGAAGATCAAGGTTTCTGTTAATTTGTTTTCTTCTTCTTCTTTCATCTTATGTTACTTCTTCTCATCAATACCCTGACCAAAAAGCAACACCAGCTTCCAATGAGACCAAAGGGGTTGATATTCATGCTAAAGTATTTTATAAACACACTTGGCCGGGGATGAAATTTGGTTGGAGAATTATAGTAGGCACCATAATTGGATTTCTAGGATCATCATTTGGCACTGTAGGAGGTGTTGGCGGGGGTGGCATATTTGTGCCCATGCTTACCCTAATTGTTGGATTTGATGCAAGATCAGCAACAGCAATATCAAAATGTGGAGCAGGAGCAACTGTTTTATACAACTTGAAGAAAAGACACCCAACCCTTGACCTTCCTGTGATTGACTATGATTTAGCACTTCTTTTCCAACCAATGTTAATGCTTGGAATCAGTCTTGGTGTTGCTTTCAATCTCATTTTTCCTGACTGGATGATAACAACTTTGCTAATCATATTTTTCACTGGTATTTCAGTTAACGCTTTCTTAAAGGGTGTTAACACTTGGAAAAAAGAAACCCTAATTAAGAAGGAAGCTAAGGACAATTCACAATTAAATGATATTAGGACAGAAGATGCTACACATGATCTTCAAGAAGGGGAATCAGTTAATGAAAGTCAAACCAATACTAATCTACCAAGAAAAAAGGTTTCTGTTATTGAGAATGTTTATTGGAAGGAACTTGGACTTCTTTTCTCTGTTTGGATCATGATACTTGCATTACAGATAGGAAAAAATTACACAACAACTTGCTCTGTGATATATTGGATATTGAATCTACTTCAGGTACCTATAGCTGTAGGAGTGAGTGGATATGAGGCTATACTTTTATACAAAGGAAAAAGAGTTATAGCTTCCAAAGGAGATCAACAAACAAATTGGAGTGTGAAGCAGTTAATTCTATATTGTTCATGTGGCATAATTGCTGGAATAATCGGTGGCTTGCTTGGTCTTGGTGGAGGGTTTATCTTAGGGCCACTATTCATTGGACTTGGAATCCCTCCTCAGGTGGCAAGTGCTACATCCACTTTTGCAATGACATTTTCTGCATCTATGTCTGTGGTGGAATATTACCTTCTGAAACGTTTTCCCATTCCATATGCTCTTTACTTTGTAGCTGTAGCCACTATTGCTGCACTTGTTGGGCAACATTTGGTGAGAAAGCTTATTGCCATATTAGGGAGAGCTTCAATTATCATTTTCATCTTAGCCCTCACAGTTTTTGTGAGTGGTATATCACTAGGTGGAACAGGCATATCAAATCTAATTAAAAGGCTTGAAAACAAAGAGTACATGGGATTTGGTAACTTATGTGCGTACGGGGTTAGGAATTAA

Protein sequence

>Msa0701770

MMMAMHGSKRRDMKWVILGRSRFLLICFLLLLSSYVTSSHQYPDQKATPASNETKGVDIHAKVFYKHTWPGMKFGWRIIVGTIIGFLGSSFGTVGGVGGGGIFVPMLTLIVGFDARSATAISKCGAGATVLYNLKKRHPTLDLPVIDYDLALLFQPMLMLGISLGVAFNLIFPDWMITTLLIIFFTGISVNAFLKGVNTWKKETLIKKEAKDNSQLNDIRTEDATHDLQEGESVNESQTNTNLPRKKVSVIENVYWKELGLLFSVWIMILALQIGKNYTTTCSVIYWILNLLQVPIAVGVSGYEAILLYKGKRVIASKGDQQTNWSVKQLILYCSCGIIAGIIGGLLGLGGGFILGPLFIGLGIPPQVASATSTFAMTFSASMSVVEYYLLKRFPIPYALYFVAVATIAALVGQHLVRKLIAILGRASIIIFILALTVFVSGISLGGTGISNLIKRLENKEYMGFGNLCAYGVRN*