AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0660390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0660390 MtrunA17_Chr8g0386921 96.205 606 18 1 1 601 1 606 0.0 1206
Msa0660390 MtrunA17_Chr1g0185621 55.978 184 72 3 4 182 12 191 2.09e-61 215
Msa0660390 MtrunA17_Chr1g0185621 32.042 284 150 8 302 564 359 620 6.72e-24 106
Msa0660390 MtrunA17_Chr5g0411341 34.104 173 94 6 19 181 60 222 3.39e-22 101
Msa0660390 MtrunA17_Chr5g0411341 47.761 67 33 1 397 463 489 553 2.01e-11 67.0
Msa0660390 MtrunA17_Chr5g0411331 33.684 190 107 7 4 184 29 208 1.03e-21 95.1
Msa0660390 MtrunA17_Chr8g0366751 28.906 256 140 12 19 253 69 303 2.89e-17 85.5
Msa0660390 MtrunA17_Chr8g0366751 49.180 61 31 0 397 457 458 518 1.86e-11 67.0
Msa0660390 MtrunA17_Chr7g0225901 41.667 84 49 0 382 465 69 152 3.29e-14 72.8
Msa0660390 MtrunA17_Chr7g0275821 45.238 84 38 1 397 472 248 331 8.92e-14 73.6
Msa0660390 MtrunA17_Chr3g0131691 33.962 159 83 4 402 557 299 438 1.64e-13 73.2
Msa0660390 MtrunA17_Chr5g0400661 26.238 202 111 6 374 560 117 295 2.30e-13 71.6
Msa0660390 MtrunA17_Chr1g0211081 29.630 189 111 6 381 557 297 475 4.46e-13 72.0
Msa0660390 MtrunA17_Chr8g0346161 57.143 56 24 0 400 455 290 345 1.91e-12 69.7
Msa0660390 MtrunA17_Chr6g0468461 44.776 67 37 0 398 464 170 236 2.70e-12 68.6
Msa0660390 MtrunA17_Chr6g0468491 37.634 93 54 1 372 464 112 200 4.24e-12 67.4
Msa0660390 MtrunA17_Chr4g0049331 43.284 67 38 0 391 457 125 191 7.67e-12 66.6
Msa0660390 MtrunA17_Chr8g0346151 50.000 70 30 1 400 469 278 342 1.00e-11 67.4
Msa0660390 MtrunA17_Chr7g0260841 50.820 61 30 0 397 457 351 411 1.06e-11 67.4
Msa0660390 MtrunA17_Chr2g0280161 24.020 204 130 2 398 601 174 352 3.53e-11 65.1
Msa0660390 MtrunA17_Chr4g0002801 23.415 205 129 3 400 600 151 331 3.72e-11 64.7
Msa0660390 MtrunA17_Chr4g0054551 41.791 67 39 0 398 464 152 218 5.37e-11 64.3
Msa0660390 MtrunA17_Chr2g0333621 24.623 199 121 4 400 594 137 310 5.88e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0660390 AT5G41315.2 43.293 656 282 20 2 598 18 642 4.64e-157 465
Msa0660390 AT5G41315.3 43.293 656 282 20 2 598 15 639 4.86e-157 465
Msa0660390 AT5G41315.1 43.293 656 282 20 2 598 10 634 4.95e-157 465
Msa0660390 AT1G63650.3 42.994 628 284 16 2 598 9 593 2.88e-156 461
Msa0660390 AT1G63650.1 42.994 628 284 16 2 598 9 593 2.88e-156 461
Msa0660390 AT1G63650.2 42.994 628 284 16 2 598 9 593 2.88e-156 461
Msa0660390 AT4G09820.1 29.748 595 304 17 10 597 24 511 2.78e-69 233
Msa0660390 AT4G00480.3 50.505 198 76 4 6 184 23 217 1.82e-54 193
Msa0660390 AT4G00480.3 28.000 275 143 8 308 563 250 488 8.10e-16 80.9
Msa0660390 AT4G00480.1 50.505 198 76 4 6 184 23 217 3.06e-54 193
Msa0660390 AT4G00480.1 28.803 309 164 9 308 597 250 521 1.29e-20 95.9
Msa0660390 AT4G00480.2 50.505 198 76 4 6 184 23 217 1.23e-53 192
Msa0660390 AT4G00480.2 28.803 309 164 9 308 597 250 521 1.21e-20 96.3
Msa0660390 AT1G32640.1 32.948 173 100 5 19 181 83 249 3.32e-20 95.1
Msa0660390 AT1G32640.1 49.180 61 31 0 397 457 448 508 4.20e-11 66.2
Msa0660390 AT4G17880.1 29.609 179 103 5 19 182 78 248 3.75e-18 88.6
Msa0660390 AT4G17880.1 50.000 62 31 0 397 458 412 473 7.46e-12 68.6
Msa0660390 AT1G01260.1 32.812 192 111 6 17 198 64 247 2.44e-17 86.3
Msa0660390 AT1G01260.1 52.239 67 32 0 398 464 430 496 2.46e-13 73.6
Msa0660390 AT1G01260.2 32.812 192 111 6 17 198 64 247 2.44e-17 86.3
Msa0660390 AT1G01260.2 52.239 67 32 0 398 464 430 496 2.46e-13 73.6
Msa0660390 AT1G01260.3 32.812 192 111 6 17 198 64 247 2.44e-17 86.3
Msa0660390 AT1G01260.3 52.239 67 32 0 398 464 430 496 2.46e-13 73.6
Msa0660390 AT2G46510.1 30.000 180 106 5 17 182 64 237 2.54e-16 82.8
Msa0660390 AT2G46510.1 52.459 61 29 0 397 457 391 451 1.87e-12 70.5
Msa0660390 AT5G46830.1 30.939 181 112 5 19 187 49 228 8.34e-15 77.8
Msa0660390 AT5G46760.1 30.460 174 100 5 19 180 67 231 6.45e-14 75.1
Msa0660390 AT5G46760.1 30.061 163 92 3 397 559 411 551 2.19e-13 73.6
Msa0660390 AT3G26744.6 32.716 162 81 6 402 557 308 447 7.59e-14 74.7
Msa0660390 AT3G26744.1 32.716 162 81 6 402 557 308 447 8.54e-14 74.7
Msa0660390 AT3G26744.4 32.716 162 81 6 402 557 308 447 8.54e-14 74.7
Msa0660390 AT3G26744.2 32.716 162 81 6 402 557 308 447 8.54e-14 74.7
Msa0660390 AT4G16430.1 29.381 194 113 8 5 187 49 229 1.24e-13 73.9
Msa0660390 AT4G16430.1 51.613 62 30 0 397 458 316 377 2.44e-12 69.7
Msa0660390 AT1G12860.2 32.919 161 78 5 402 557 268 403 1.38e-13 73.6
Msa0660390 AT1G12860.1 32.919 161 78 5 402 557 268 403 1.43e-13 73.6
Msa0660390 AT4G37850.2 28.125 160 87 3 399 556 150 283 2.58e-13 72.0
Msa0660390 AT4G37850.1 28.125 160 87 3 399 556 150 283 2.58e-13 72.0
Msa0660390 AT2G22760.2 26.452 155 91 3 402 556 120 251 2.07e-12 68.6
Msa0660390 AT2G22760.1 26.452 155 91 3 402 556 120 251 2.97e-12 68.2
Msa0660390 AT2G22770.1 43.284 67 38 0 391 457 122 188 3.83e-11 65.1

Find 117 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTCTGTCACAACTTTCTT+TGG 0.194766 4_3:+71102528 Msa0660390:five_prime_UTR
AAAACTTTGAAGCCACTTTC+TGG 0.199218 4_3:-71106729 None:intergenic
AGGAAGGATATTAGAAATTA+TGG 0.249790 4_3:+71106211 Msa0660390:CDS
TAGAAAATGGCCAACCAATT+TGG 0.253067 4_3:+71103985 Msa0660390:CDS
TCAGCATCAATTAGCCAAAT+TGG 0.260352 4_3:-71103999 None:intergenic
AATATCCTTCCTGCTTTAGA+AGG 0.272945 4_3:-71106200 None:intergenic
AGATACCGAGTGGTACTATT+TGG 0.275916 4_3:+71103802 Msa0660390:CDS
ATTATGTCATATCCAACTTC+TGG 0.286568 4_3:-71105055 None:intergenic
AATGTAGCTCGAGCGTTAAT+AGG 0.287585 4_3:-71104962 None:intergenic
TAGTCACAAATGAAAATTCT+TGG 0.304530 4_3:+71106831 Msa0660390:three_prime_UTR
AAAGTTATTGAAGAAGATTT+TGG 0.310498 4_3:+71105468 Msa0660390:CDS
AGGTCCCTTGTCTTGGCCTT+TGG 0.323833 4_3:-71105441 None:intergenic
GAACTTAGTTCTGACGAAAT+AGG 0.323945 4_3:+71103671 Msa0660390:CDS
GGTTGAAAGCTGGCAAGTTT+TGG 0.326038 4_3:+71105150 Msa0660390:CDS
GCACTTGTAAATTGGTAGAT+AGG 0.328485 4_3:+71106943 Msa0660390:three_prime_UTR
AATATTACCTTACTATTTGA+AGG 0.331430 4_3:-71105658 None:intergenic
TTGTTTCAGCACTTGTAAAT+TGG 0.338805 4_3:+71106935 Msa0660390:three_prime_UTR
CCAGGAAGAGCTCTAGAAAA+TGG 0.340134 4_3:+71103972 Msa0660390:CDS
CTTCAAAAGGAAGTTCTAAT+AGG 0.340490 4_3:+71106126 Msa0660390:CDS
AATGCATCCCCGTTGTTAAC+TGG 0.347653 4_3:-71105357 None:intergenic
TTTGGAAACAATAACTGATA+TGG 0.348285 4_3:-71102680 None:intergenic
TCATCTAATCATTAAATCTA+AGG 0.350741 4_3:+71106301 Msa0660390:CDS
TAATGCCAATCTTCACTTAG+AGG 0.362258 4_3:-71105298 None:intergenic
CAGCTAATGCAACAACAAAA+AGG 0.368472 4_3:+71106692 Msa0660390:CDS
ATAGATTCATGTCAAATCAT+TGG 0.385491 4_3:-71106995 None:intergenic
GTTGAATTAATTCCAGAAGT+TGG 0.399420 4_3:+71105043 Msa0660390:CDS
AATGCATTTGAGCTACCATT+AGG 0.406315 4_3:-71105094 None:intergenic
AGCAATGACCAGTTAACAAC+GGG 0.413039 4_3:+71105349 Msa0660390:CDS
TCAACCATGAATGTTTCATT+TGG 0.414054 4_3:-71105133 None:intergenic
CATGAAGGAGCAACTTGCTT+TGG 0.415492 4_3:+71102874 Msa0660390:CDS
TCTCTGGAATAAATACCTAT+TGG 0.426774 4_3:+71106895 Msa0660390:three_prime_UTR
TGTTTCATTTGGTAGTTGAT+TGG 0.427906 4_3:-71105122 None:intergenic
ACTACCAAATGAAACATTCA+TGG 0.431417 4_3:+71105129 Msa0660390:CDS
TTGCAATCTTCTCCAACCTT+CGG 0.434210 4_3:-71105247 None:intergenic
ATGTAGCTCGAGCGTTAATA+GGG 0.437263 4_3:-71104961 None:intergenic
ATACCAACCCTCAAACAAAA+AGG 0.440617 4_3:+71103747 Msa0660390:CDS
TTCAATTTAATTTCTCCCAC+TGG 0.443687 4_3:+71106787 Msa0660390:three_prime_UTR
TCGGTATCTGTGAGATCATC+AGG 0.444790 4_3:-71103788 None:intergenic
AATGGAGCTATGTAATATTC+TGG 0.445432 4_3:+71102912 Msa0660390:CDS
AATGGTTCCTTCAAATAGTA+AGG 0.449741 4_3:+71105651 Msa0660390:CDS
CTTCTAGACTCTATACCTGT+TGG 0.459759 4_3:-71105963 None:intergenic
ATTTCTTCTGCTCCGAAGGT+TGG 0.465687 4_3:+71105235 Msa0660390:CDS
CTTGGCCTTTGGAAATTCAC+AGG 0.474066 4_3:-71105430 None:intergenic
AACACAGCAACCTCTCCTAA+TGG 0.474418 4_3:+71105079 Msa0660390:CDS
TATAATAACAAAACTAACAA+TGG 0.477360 4_3:+71106032 Msa0660390:CDS
ATGAAAGGGGTTATTGAGCT+AGG 0.483817 4_3:+71104744 Msa0660390:CDS
TGGCAGTTAGAAGCATTCAA+TGG 0.489433 4_3:+71102894 Msa0660390:CDS
ATAATAACAAAACTAACAAT+GGG 0.493585 4_3:+71106033 Msa0660390:CDS
TGGATCCTCTAAGTGAAGAT+TGG 0.499708 4_3:+71105293 Msa0660390:CDS
AAATATTTCTTCTGCTCCGA+AGG 0.503521 4_3:+71105231 Msa0660390:CDS
GTCCATGTTACATCACCAAT+AGG 0.505991 4_3:-71106910 None:intergenic
TTGTGTGTTCTTAGTTTACC+AGG 0.508462 4_3:+71103954 Msa0660390:intron
TATGCAGTCACTTGAATTCA+CGG 0.508466 4_3:-71105203 None:intergenic
TCTGTTGCATAAGTAGATAA+TGG 0.508707 4_3:+71102841 Msa0660390:exon
GATTCAGATGTTGACTTGAG+AGG 0.508977 4_3:-71102639 None:intergenic
ATGTGTTCAGATGCTTCAAA+AGG 0.516460 4_3:+71106113 Msa0660390:CDS
TCCTTCTTTCTGACAAAACA+TGG 0.517100 4_3:-71105588 None:intergenic
GAGGAAAATTTGTGACATAG+AGG 0.518793 4_3:+71106076 Msa0660390:CDS
AGTTTGTATCTTACCCTGGT+TGG 0.519375 4_3:-71102949 None:intergenic
TTTGTATTCAACATTGGCCA+AGG 0.526754 4_3:+71103836 Msa0660390:CDS
TCAATAACCCCTTTCATGAA+AGG 0.530003 4_3:-71104738 None:intergenic
ATTCAGATGTTGACTTGAGA+GGG 0.536872 4_3:-71102638 None:intergenic
AAACATTCATGGTTGAAAGC+TGG 0.541473 4_3:+71105140 Msa0660390:CDS
ATGAAGTGCCCTTCTAAAGC+AGG 0.542240 4_3:+71106191 Msa0660390:CDS
CATCAATTAGCCAAATTGGT+TGG 0.542518 4_3:-71103995 None:intergenic
TACCTATTGGTGATGTAACA+TGG 0.542999 4_3:+71106908 Msa0660390:three_prime_UTR
AATGCTATGTTCTGATAAGA+TGG 0.547033 4_3:-71102596 None:intergenic
CTTTGAAGCCACTTTCTGGA+GGG 0.551118 4_3:-71106725 None:intergenic
GAAGCTAAAAGAGAGCCAAC+AGG 0.551286 4_3:+71105948 Msa0660390:CDS
TAACAATGGGAAGAAACCTA+TGG 0.559013 4_3:+71106046 Msa0660390:CDS
GAAGAGCAAAGCTAAATGAA+AGG 0.559544 4_3:+71105611 Msa0660390:CDS
CAGATGTTGACTTGAGAGGG+AGG 0.560326 4_3:-71102635 None:intergenic
ATATCCTTCCTGCTTTAGAA+GGG 0.566065 4_3:-71106199 None:intergenic
ATGTCCTTTGTATTCAACAT+TGG 0.570336 4_3:+71103830 Msa0660390:CDS
CAATCAACAGAAGAAGCTGA+TGG 0.570848 4_3:+71106272 Msa0660390:CDS
CAAGCAAGCCCTCCAGAAAG+TGG 0.573779 4_3:+71106717 Msa0660390:CDS
TTTGTGACATAGAGGAGGCA+AGG 0.582275 4_3:+71106084 Msa0660390:CDS
ACTTTGAAGCCACTTTCTGG+AGG 0.587869 4_3:-71106726 None:intergenic
TTGTATTCAACATTGGCCAA+GGG 0.589483 4_3:+71103837 Msa0660390:CDS
TCTGAATCTGTTAACCAACC+AGG 0.589945 4_3:+71102935 Msa0660390:CDS
TAGTCGCGCTCTCCTCGCAA+AGG 0.589968 4_3:+71104043 Msa0660390:CDS
TGGTTTGCTTGAATCTCAAG+AGG 0.591791 4_3:+71105516 Msa0660390:CDS
AAAATCACATCATGATATGG+TGG 0.591939 4_3:+71105989 Msa0660390:CDS
GTTCCACGGATGCACACTGA+TGG 0.593993 4_3:+71105496 Msa0660390:CDS
ATCTCTGTGTGACACGCCAG+TGG 0.597772 4_3:-71106803 None:intergenic
AATCAACAGAAGAAGCTGAT+GGG 0.598027 4_3:+71106273 Msa0660390:CDS
ACAAGACTAGAGGCTGATGA+AGG 0.599190 4_3:+71105559 Msa0660390:CDS
AATTTCCAAAGGCCAAGACA+AGG 0.606654 4_3:+71105436 Msa0660390:CDS
ACCGAAAAGACTTACGTGAT+CGG 0.607356 4_3:-71104772 None:intergenic
GAGGAGAATGACTATAGAGA+AGG 0.612043 4_3:+71105535 Msa0660390:CDS
TCAGGTGAAAGTGCTGCAGA+AGG 0.614503 4_3:-71103770 None:intergenic
AAGACAAGGAAAACAAGTCA+AGG 0.617178 4_3:+71103644 Msa0660390:CDS
GAAAATTTGTGACATAGAGG+AGG 0.617806 4_3:+71106079 Msa0660390:CDS
AAACCATCAGTGTGCATCCG+TGG 0.620753 4_3:-71105499 None:intergenic
CTATGTTCTGATAAGATGGT+TGG 0.625847 4_3:-71102592 None:intergenic
ATTTGAGCTACCATTAGGAG+AGG 0.628279 4_3:-71105089 None:intergenic
CACATCATGATATGGTGGAG+AGG 0.629700 4_3:+71105994 Msa0660390:CDS
AAGGAAAACAAGTCAAGGAG+TGG 0.630274 4_3:+71103649 Msa0660390:CDS
CTGAATCTGTTAACCAACCA+GGG 0.631174 4_3:+71102936 Msa0660390:CDS
AATGGTGCCACAAAACATGA+AGG 0.633238 4_3:+71102859 Msa0660390:exon
TAGAGAAGGTACAAGACTAG+AGG 0.643862 4_3:+71105549 Msa0660390:CDS
GTGTGCCTGTGAATTTCCAA+AGG 0.646463 4_3:+71105425 Msa0660390:CDS
TTTCAGGGTGTTGAGCTGGG+GGG 0.650923 4_3:+71103598 Msa0660390:intron
CTGATATGGCTACAAAAGTG+TGG 0.653779 4_3:-71102666 None:intergenic
TCTCTGTGTGACACGCCAGT+GGG 0.655629 4_3:-71106802 None:intergenic
GAGAAACATATACCTTTGCG+AGG 0.658095 4_3:-71104055 None:intergenic
AATGTCAGTATGAGTGACAA+TGG 0.659345 4_3:+71106155 Msa0660390:CDS
TTGGCCAATGTTGAATACAA+AGG 0.661616 4_3:-71103834 None:intergenic
AAGCAATGACCAGTTAACAA+CGG 0.681259 4_3:+71105348 Msa0660390:CDS
ATTTCCAAAGGCCAAGACAA+GGG 0.685503 4_3:+71105437 Msa0660390:CDS
AGTGCCCTTCTAAAGCAGGA+AGG 0.694013 4_3:+71106195 Msa0660390:CDS
GCAAACCAAATAGTACCACT+CGG 0.699870 4_3:-71103807 None:intergenic
CTGACGAAATAGGCTTACAG+AGG 0.712274 4_3:+71103681 Msa0660390:CDS
TTGAATTCGAGAAATAACGA+AGG 0.725975 4_3:+71104983 Msa0660390:CDS
ACAATGGAGAGATTAAGACA+AGG 0.747987 4_3:+71103630 Msa0660390:CDS
ATGATCTCACAGATACCGAG+TGG 0.748813 4_3:+71103792 Msa0660390:CDS
GCAATGACCAGTTAACAACG+GGG 0.828924 4_3:+71105350 Msa0660390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACTACTTTTTTTTTTTGAA+AGG - chr4_3:71102504-71102523 None:intergenic 15.0%
!! AGAAAACTATTAATAACTAT+TGG - chr4_3:71104378-71104397 None:intergenic 15.0%
!! TTTGGAAATTAATAGAATAA+AGG - chr4_3:71104603-71104622 None:intergenic 15.0%
!! ATTAATGTTATAAAAGACAA+TGG - chr4_3:71104802-71104821 None:intergenic 15.0%
!! TATAATAACAAAACTAACAA+TGG + chr4_3:71106032-71106051 Msa0660390:CDS 15.0%
!! ATAATAACAAAACTAACAAT+GGG + chr4_3:71106033-71106052 Msa0660390:CDS 15.0%
!! TATTTGAGTAAATAACAATT+TGG + chr4_3:71106338-71106357 Msa0660390:intron 15.0%
!!! ATTAACATTTTACAATTCTA+AGG - chr4_3:71106396-71106415 None:intergenic 15.0%
!! TAATAACATATCTAAATAGA+TGG - chr4_3:71106435-71106454 None:intergenic 15.0%
!! AAATATTGTTAATGTTATGT+AGG + chr4_3:71106592-71106611 Msa0660390:intron 15.0%
!! AATATTGTTAATGTTATGTA+GGG + chr4_3:71106593-71106612 Msa0660390:intron 15.0%
!!! ATATGTCATAAATTGTTTTC+AGG + chr4_3:71103419-71103438 Msa0660390:intron 20.0%
!! TGTACAATTTAAAAACAGAA+AGG - chr4_3:71103907-71103926 None:intergenic 20.0%
!! AAATTTACATGTGTTAAGAT+AGG + chr4_3:71104423-71104442 Msa0660390:intron 20.0%
!!! AAAGTTATTGAAGAAGATTT+TGG + chr4_3:71105468-71105487 Msa0660390:CDS 20.0%
!! AATATTACCTTACTATTTGA+AGG - chr4_3:71105661-71105680 None:intergenic 20.0%
!! ATTAAATACATTATTCATGC+AGG + chr4_3:71105854-71105873 Msa0660390:intron 20.0%
!! TAAAAAATCACATCATGATA+TGG + chr4_3:71105986-71106005 Msa0660390:CDS 20.0%
!! TCATCTAATCATTAAATCTA+AGG + chr4_3:71106301-71106320 Msa0660390:CDS 20.0%
!!! AATTTGGTATCTAAAATTGT+AGG + chr4_3:71106354-71106373 Msa0660390:intron 20.0%
!! AAACTTAGAGAATAATGTAA+GGG - chr4_3:71106465-71106484 None:intergenic 20.0%
!! ATATTGTTAATGTTATGTAG+GGG + chr4_3:71106594-71106613 Msa0660390:intron 20.0%
! TATATATATATATGCAGCAG+AGG - chr4_3:71102563-71102582 None:intergenic 25.0%
! TTTGGAAACAATAACTGATA+TGG - chr4_3:71102683-71102702 None:intergenic 25.0%
!!! TGTTTTTCAGTTACTAGATT+TGG - chr4_3:71102701-71102720 None:intergenic 25.0%
!! AAAAACAATCACTTCTGTTT+TGG + chr4_3:71102714-71102733 Msa0660390:five_prime_UTR 25.0%
! TAGCATAAACACATTTAATG+AGG - chr4_3:71102990-71103009 None:intergenic 25.0%
! AAACATGAACATATTCAAGA+AGG - chr4_3:71103032-71103051 None:intergenic 25.0%
! CATATAAAGTCTTAGTTTCA+AGG - chr4_3:71103063-71103082 None:intergenic 25.0%
!! CATCTAAGATAACAAATAAG+TGG - chr4_3:71103194-71103213 None:intergenic 25.0%
! ATGCTTAAGTCAATAATTGA+GGG - chr4_3:71103359-71103378 None:intergenic 25.0%
! TATGCTTAAGTCAATAATTG+AGG - chr4_3:71103360-71103379 None:intergenic 25.0%
! AGATTATCTTAGAGAGTTTA+TGG + chr4_3:71103384-71103403 Msa0660390:intron 25.0%
!! TATAAAGGCGTGTATAAAAA+GGG - chr4_3:71104137-71104156 None:intergenic 25.0%
!! TTATAAAGGCGTGTATAAAA+AGG - chr4_3:71104138-71104157 None:intergenic 25.0%
! GGTGTACTTATAAAAAGAAA+GGG + chr4_3:71104169-71104188 Msa0660390:intron 25.0%
! TAACATTTATCTTCTTCCTT+TGG + chr4_3:71104239-71104258 Msa0660390:intron 25.0%
! TGGAGTTCATTTATAATACA+AGG - chr4_3:71104358-71104377 None:intergenic 25.0%
! TATCCATCCTTATTACTATT+TGG + chr4_3:71104498-71104517 Msa0660390:intron 25.0%
! ATCCATCCTTATTACTATTT+GGG + chr4_3:71104499-71104518 Msa0660390:intron 25.0%
!!! AGATTATTAGTCTTTAGGTT+TGG - chr4_3:71104621-71104640 None:intergenic 25.0%
!!! GTCTTAGATTATTAGTCTTT+AGG - chr4_3:71104626-71104645 None:intergenic 25.0%
!!! GGATTTTGGTTTCTAAAATT+TGG - chr4_3:71104659-71104678 None:intergenic 25.0%
!! AAATTACACAATGCATTGAT+AGG - chr4_3:71104680-71104699 None:intergenic 25.0%
! ACATTATTACAAGAAGTTGA+GGG - chr4_3:71104845-71104864 None:intergenic 25.0%
! AACATTATTACAAGAAGTTG+AGG - chr4_3:71104846-71104865 None:intergenic 25.0%
!!! GTTTTTAACTCTTAGATCAA+TGG + chr4_3:71105633-71105652 Msa0660390:CDS 25.0%
! AATGATCAAGCTAAGAAATA+TGG - chr4_3:71105697-71105716 None:intergenic 25.0%
! CATAATATTGTATCAAACAC+AGG + chr4_3:71105783-71105802 Msa0660390:intron 25.0%
! AGGAAGGATATTAGAAATTA+TGG + chr4_3:71106211-71106230 Msa0660390:CDS 25.0%
! GAAACTTAGAGAATAATGTA+AGG - chr4_3:71106466-71106485 None:intergenic 25.0%
! TTGCAAAATGTTAATCAGAT+TGG - chr4_3:71106556-71106575 None:intergenic 25.0%
! TAGTCACAAATGAAAATTCT+TGG + chr4_3:71106831-71106850 Msa0660390:three_prime_UTR 25.0%
!! TAATAGAAAAAGTTAGTCTC+TGG + chr4_3:71106879-71106898 Msa0660390:three_prime_UTR 25.0%
! ATAGATTCATGTCAAATCAT+TGG - chr4_3:71106998-71107017 None:intergenic 25.0%
ATTTCTGTCACAACTTTCTT+TGG + chr4_3:71102528-71102547 Msa0660390:five_prime_UTR 30.0%
AATGCTATGTTCTGATAAGA+TGG - chr4_3:71102599-71102618 None:intergenic 30.0%
TCTGTTGCATAAGTAGATAA+TGG + chr4_3:71102841-71102860 Msa0660390:exon 30.0%
AATGGAGCTATGTAATATTC+TGG + chr4_3:71102912-71102931 Msa0660390:CDS 30.0%
!! TGCCAAAATTTGATTTGAGA+TGG + chr4_3:71103100-71103119 Msa0660390:intron 30.0%
!! GCCAAAATTTGATTTGAGAT+GGG + chr4_3:71103101-71103120 Msa0660390:intron 30.0%
! ACCCATCTCAAATCAAATTT+TGG - chr4_3:71103105-71103124 None:intergenic 30.0%
TGAAAAATGGTCAAGGAAAA+AGG - chr4_3:71103583-71103602 None:intergenic 30.0%
!! TTTTTCCTTGACCATTTTTC+AGG + chr4_3:71103582-71103601 Msa0660390:intron 30.0%
!! TTTTCCTTGACCATTTTTCA+GGG + chr4_3:71103583-71103602 Msa0660390:intron 30.0%
ATGTCCTTTGTATTCAACAT+TGG + chr4_3:71103830-71103849 Msa0660390:CDS 30.0%
ACTAGAAAGGAACACAAAAA+AGG - chr4_3:71103881-71103900 None:intergenic 30.0%
ACTAAGAACACACAAATTTG+AGG - chr4_3:71103949-71103968 None:intergenic 30.0%
TATGTTTCTCTTTCTTTAGC+TGG + chr4_3:71104068-71104087 Msa0660390:intron 30.0%
GCCTTTATAAACTCACAAAA+GGG + chr4_3:71104148-71104167 Msa0660390:intron 30.0%
! ACCCTTTTGTGAGTTTATAA+AGG - chr4_3:71104152-71104171 None:intergenic 30.0%
GGGTGTACTTATAAAAAGAA+AGG + chr4_3:71104168-71104187 Msa0660390:intron 30.0%
TGTTTAAGGAACAAAACCAA+AGG - chr4_3:71104258-71104277 None:intergenic 30.0%
TTAGACTAAACACTAAAGAG+TGG - chr4_3:71104463-71104482 None:intergenic 30.0%
TTCCCAAATAGTAATAAGGA+TGG - chr4_3:71104504-71104523 None:intergenic 30.0%
!! ACAATGCATTGATAGGATTT+TGG - chr4_3:71104673-71104692 None:intergenic 30.0%
! TGTGTTTTCCTTTCATGAAA+GGG + chr4_3:71104730-71104749 Msa0660390:CDS 30.0%
ACTTCTTGTAATAATGTTGC+TGG + chr4_3:71104848-71104867 Msa0660390:intron 30.0%
TTGAATTCGAGAAATAACGA+AGG + chr4_3:71104983-71105002 Msa0660390:CDS 30.0%
GTTGAATTAATTCCAGAAGT+TGG + chr4_3:71105043-71105062 Msa0660390:CDS 30.0%
ATTATGTCATATCCAACTTC+TGG - chr4_3:71105058-71105077 None:intergenic 30.0%
! TGTTTCATTTGGTAGTTGAT+TGG - chr4_3:71105125-71105144 None:intergenic 30.0%
ACTACCAAATGAAACATTCA+TGG + chr4_3:71105129-71105148 Msa0660390:CDS 30.0%
TCAACCATGAATGTTTCATT+TGG - chr4_3:71105136-71105155 None:intergenic 30.0%
TAACCAAAAAATGAGCTTAG+TGG + chr4_3:71105273-71105292 Msa0660390:CDS 30.0%
! AAGAATCAAGCTTTTGTGTT+TGG + chr4_3:71105395-71105414 Msa0660390:CDS 30.0%
! CTTCTTCAATAACTTTTGTG+AGG - chr4_3:71105464-71105483 None:intergenic 30.0%
AATGGTTCCTTCAAATAGTA+AGG + chr4_3:71105651-71105670 Msa0660390:CDS 30.0%
! TCTTTTTCTCAAGCTTTCTA+AGG - chr4_3:71105917-71105936 None:intergenic 30.0%
TGAGAAAAAGATAAGAGAGT+TGG + chr4_3:71105926-71105945 Msa0660390:CDS 30.0%
AAAATCACATCATGATATGG+TGG + chr4_3:71105989-71106008 Msa0660390:CDS 30.0%
!! ATTTTCCTCTTTTTCACCAT+AGG - chr4_3:71106065-71106084 None:intergenic 30.0%
! CTTCAAAAGGAAGTTCTAAT+AGG + chr4_3:71106126-71106145 Msa0660390:CDS 30.0%
TGAGATAATTGGTATTCTCA+TGG - chr4_3:71106529-71106548 None:intergenic 30.0%
! AGATTGGTTCTTGAGATAAT+TGG - chr4_3:71106540-71106559 None:intergenic 30.0%
!! TCCTTTTATTTGCAGTTCAA+AGG + chr4_3:71106667-71106686 Msa0660390:intron 30.0%
TCCTTTGAACTGCAAATAAA+AGG - chr4_3:71106671-71106690 None:intergenic 30.0%
! TTCAATTTAATTTCTCCCAC+TGG + chr4_3:71106787-71106806 Msa0660390:three_prime_UTR 30.0%
!! TCTCTGGAATAAATACCTAT+TGG + chr4_3:71106895-71106914 Msa0660390:three_prime_UTR 30.0%
TTGTTTCAGCACTTGTAAAT+TGG + chr4_3:71106935-71106954 Msa0660390:three_prime_UTR 30.0%
CTATGTTCTGATAAGATGGT+TGG - chr4_3:71102595-71102614 None:intergenic 35.0%
!! ATTCAGATGTTGACTTGAGA+GGG - chr4_3:71102641-71102660 None:intergenic 35.0%
AAACAGTTTGTATCTTACCC+TGG - chr4_3:71102956-71102975 None:intergenic 35.0%
! CTGCATTAAAGGTTTTTGCT+AGG + chr4_3:71103280-71103299 Msa0660390:intron 35.0%
CGATAAGCTGTTTATCAACA+AGG + chr4_3:71103557-71103576 Msa0660390:intron 35.0%
ACAATGGAGAGATTAAGACA+AGG + chr4_3:71103630-71103649 Msa0660390:CDS 35.0%
AAGACAAGGAAAACAAGTCA+AGG + chr4_3:71103644-71103663 Msa0660390:CDS 35.0%
!! GAACTTAGTTCTGACGAAAT+AGG + chr4_3:71103671-71103690 Msa0660390:CDS 35.0%
!! GTTGGTATCTACTGTTTTGA+GGG - chr4_3:71103735-71103754 None:intergenic 35.0%
ATACCAACCCTCAAACAAAA+AGG + chr4_3:71103747-71103766 Msa0660390:CDS 35.0%
TTGGCCAATGTTGAATACAA+AGG - chr4_3:71103837-71103856 None:intergenic 35.0%
TTTGTATTCAACATTGGCCA+AGG + chr4_3:71103836-71103855 Msa0660390:CDS 35.0%
TTGTATTCAACATTGGCCAA+GGG + chr4_3:71103837-71103856 Msa0660390:CDS 35.0%
AAAAGAGTGAGATTTACCCT+TGG - chr4_3:71103856-71103875 None:intergenic 35.0%
AACAGAAAGGCAAACTAGAA+AGG - chr4_3:71103894-71103913 None:intergenic 35.0%
TTGTGTGTTCTTAGTTTACC+AGG + chr4_3:71103954-71103973 Msa0660390:intron 35.0%
TAGAAAATGGCCAACCAATT+TGG + chr4_3:71103985-71104004 Msa0660390:CDS 35.0%
CATCAATTAGCCAAATTGGT+TGG - chr4_3:71103998-71104017 None:intergenic 35.0%
TCAGCATCAATTAGCCAAAT+TGG - chr4_3:71104002-71104021 None:intergenic 35.0%
CGCCTTTATAAACTCACAAA+AGG + chr4_3:71104147-71104166 Msa0660390:intron 35.0%
GACAGGTTCAAATGTGTTTA+AGG - chr4_3:71104272-71104291 None:intergenic 35.0%
TGTTAAGATAGGTCTTGCTT+TGG + chr4_3:71104434-71104453 Msa0660390:intron 35.0%
CAGGTTCCCAAATAGTAATA+AGG - chr4_3:71104508-71104527 None:intergenic 35.0%
ATTACTATTTGGGAACCTGT+AGG + chr4_3:71104509-71104528 Msa0660390:intron 35.0%
! GTGTGTTTTCCTTTCATGAA+AGG + chr4_3:71104729-71104748 Msa0660390:CDS 35.0%
! GTGTTTTCCTTTCATGAAAG+GGG + chr4_3:71104731-71104750 Msa0660390:CDS 35.0%
TCAATAACCCCTTTCATGAA+AGG - chr4_3:71104741-71104760 None:intergenic 35.0%
AATGCATTTGAGCTACCATT+AGG - chr4_3:71105097-71105116 None:intergenic 35.0%
AAACATTCATGGTTGAAAGC+TGG + chr4_3:71105140-71105159 Msa0660390:CDS 35.0%
TATGCAGTCACTTGAATTCA+CGG - chr4_3:71105206-71105225 None:intergenic 35.0%
AAATATTTCTTCTGCTCCGA+AGG + chr4_3:71105231-71105250 Msa0660390:CDS 35.0%
!!! GATCCACTAAGCTCATTTTT+TGG - chr4_3:71105279-71105298 None:intergenic 35.0%
TAATGCCAATCTTCACTTAG+AGG - chr4_3:71105301-71105320 None:intergenic 35.0%
AAGCAATGACCAGTTAACAA+CGG + chr4_3:71105348-71105367 Msa0660390:CDS 35.0%
!! AGCTTTTGTGTTTGGAACAA+AGG + chr4_3:71105403-71105422 Msa0660390:CDS 35.0%
! ACCATGTTTTGTCAGAAAGA+AGG + chr4_3:71105587-71105606 Msa0660390:CDS 35.0%
TCCTTCTTTCTGACAAAACA+TGG - chr4_3:71105591-71105610 None:intergenic 35.0%
GAAGAGCAAAGCTAAATGAA+AGG + chr4_3:71105611-71105630 Msa0660390:CDS 35.0%
TCTAGTGTTTGTGTTTGTGT+CGG - chr4_3:71105739-71105758 None:intergenic 35.0%
TAACAATGGGAAGAAACCTA+TGG + chr4_3:71106046-71106065 Msa0660390:CDS 35.0%
AGAAACCTATGGTGAAAAAG+AGG + chr4_3:71106057-71106076 Msa0660390:CDS 35.0%
GAGGAAAATTTGTGACATAG+AGG + chr4_3:71106076-71106095 Msa0660390:CDS 35.0%
GAAAATTTGTGACATAGAGG+AGG + chr4_3:71106079-71106098 Msa0660390:CDS 35.0%
ATGTGTTCAGATGCTTCAAA+AGG + chr4_3:71106113-71106132 Msa0660390:CDS 35.0%
AATGTCAGTATGAGTGACAA+TGG + chr4_3:71106155-71106174 Msa0660390:CDS 35.0%
!! ATATCCTTCCTGCTTTAGAA+GGG - chr4_3:71106202-71106221 None:intergenic 35.0%
! AATATCCTTCCTGCTTTAGA+AGG - chr4_3:71106203-71106222 None:intergenic 35.0%
AATCAACAGAAGAAGCTGAT+GGG + chr4_3:71106273-71106292 Msa0660390:CDS 35.0%
GGACTATAAGGACATTAAGT+TGG - chr4_3:71106508-71106527 None:intergenic 35.0%
! TGGTATTCTCATGGACTATA+AGG - chr4_3:71106520-71106539 None:intergenic 35.0%
TGTAGGGGACTAATTTGATA+AGG + chr4_3:71106609-71106628 Msa0660390:intron 35.0%
GTAGGGGACTAATTTGATAA+GGG + chr4_3:71106610-71106629 Msa0660390:intron 35.0%
!!! CTTTTTGTTGTTGCATTAGC+TGG - chr4_3:71106694-71106713 None:intergenic 35.0%
CAGCTAATGCAACAACAAAA+AGG + chr4_3:71106692-71106711 Msa0660390:CDS 35.0%
!! AAAACTTTGAAGCCACTTTC+TGG - chr4_3:71106732-71106751 None:intergenic 35.0%
!! TACCTATTGGTGATGTAACA+TGG + chr4_3:71106908-71106927 Msa0660390:three_prime_UTR 35.0%
GCACTTGTAAATTGGTAGAT+AGG + chr4_3:71106943-71106962 Msa0660390:three_prime_UTR 35.0%
!! GATTCAGATGTTGACTTGAG+AGG - chr4_3:71102642-71102661 None:intergenic 40.0%
CTGATATGGCTACAAAAGTG+TGG - chr4_3:71102669-71102688 None:intergenic 40.0%
!! AATGGTGCCACAAAACATGA+AGG + chr4_3:71102859-71102878 Msa0660390:exon 40.0%
! AGTTGCTCCTTCATGTTTTG+TGG - chr4_3:71102869-71102888 None:intergenic 40.0%
!! TGGCAGTTAGAAGCATTCAA+TGG + chr4_3:71102894-71102913 Msa0660390:CDS 40.0%
TCTGAATCTGTTAACCAACC+AGG + chr4_3:71102935-71102954 Msa0660390:CDS 40.0%
CTGAATCTGTTAACCAACCA+GGG + chr4_3:71102936-71102955 Msa0660390:CDS 40.0%
AGTTTGTATCTTACCCTGGT+TGG - chr4_3:71102952-71102971 None:intergenic 40.0%
! GCTACTACTTGCTGCATTAA+AGG + chr4_3:71103269-71103288 Msa0660390:intron 40.0%
AACACCCTGAAAAATGGTCA+AGG - chr4_3:71103590-71103609 None:intergenic 40.0%
!!! ATTTTTCAGGGTGTTGAGCT+GGG + chr4_3:71103595-71103614 Msa0660390:intron 40.0%
AAGGAAAACAAGTCAAGGAG+TGG + chr4_3:71103649-71103668 Msa0660390:CDS 40.0%
!! GGTTGGTATCTACTGTTTTG+AGG - chr4_3:71103736-71103755 None:intergenic 40.0%
!! CAGAAGGCCTTTTTGTTTGA+GGG - chr4_3:71103757-71103776 None:intergenic 40.0%
AGATACCGAGTGGTACTATT+TGG + chr4_3:71103802-71103821 Msa0660390:CDS 40.0%
GCAAACCAAATAGTACCACT+CGG - chr4_3:71103810-71103829 None:intergenic 40.0%
GAGAAACATATACCTTTGCG+AGG - chr4_3:71104058-71104077 None:intergenic 40.0%
AAGGCGTGTATAAAAAGGGA+CGG - chr4_3:71104133-71104152 None:intergenic 40.0%
AATTGATGCACTCTGAGCAT+GGG - chr4_3:71104299-71104318 None:intergenic 40.0%
TCAATGTAATTGCACGTCTC+TGG - chr4_3:71104540-71104559 None:intergenic 40.0%
ATGAAAGGGGTTATTGAGCT+AGG + chr4_3:71104744-71104763 Msa0660390:CDS 40.0%
! ACCGATCACGTAAGTCTTTT+CGG + chr4_3:71104771-71104790 Msa0660390:intron 40.0%
ACCGAAAAGACTTACGTGAT+CGG - chr4_3:71104775-71104794 None:intergenic 40.0%
TTCCAATACCTTCACACCAA+AGG - chr4_3:71104882-71104901 None:intergenic 40.0%
ATGTAGCTCGAGCGTTAATA+GGG - chr4_3:71104964-71104983 None:intergenic 40.0%
AATGTAGCTCGAGCGTTAAT+AGG - chr4_3:71104965-71104984 None:intergenic 40.0%
ATTTGAGCTACCATTAGGAG+AGG - chr4_3:71105092-71105111 None:intergenic 40.0%
TTGCAATCTTCTCCAACCTT+CGG - chr4_3:71105250-71105269 None:intergenic 40.0%
TGGATCCTCTAAGTGAAGAT+TGG + chr4_3:71105293-71105312 Msa0660390:CDS 40.0%
AGCAATGACCAGTTAACAAC+GGG + chr4_3:71105349-71105368 Msa0660390:CDS 40.0%
AATTTCCAAAGGCCAAGACA+AGG + chr4_3:71105436-71105455 Msa0660390:CDS 40.0%
ATTTCCAAAGGCCAAGACAA+GGG + chr4_3:71105437-71105456 Msa0660390:CDS 40.0%
!! AGATTTTGGTCGAAGTTCCA+CGG + chr4_3:71105482-71105501 Msa0660390:CDS 40.0%
!! TGGTTTGCTTGAATCTCAAG+AGG + chr4_3:71105516-71105535 Msa0660390:CDS 40.0%
GAGGAGAATGACTATAGAGA+AGG + chr4_3:71105535-71105554 Msa0660390:CDS 40.0%
! TAGAGAAGGTACAAGACTAG+AGG + chr4_3:71105549-71105568 Msa0660390:CDS 40.0%
! GCACTGATACTTCAGATTGA+AGG - chr4_3:71105814-71105833 None:intergenic 40.0%
CTTCTAGACTCTATACCTGT+TGG - chr4_3:71105966-71105985 None:intergenic 40.0%
CAATCAACAGAAGAAGCTGA+TGG + chr4_3:71106272-71106291 Msa0660390:CDS 40.0%
GTCCATGTTACATCACCAAT+AGG - chr4_3:71106913-71106932 None:intergenic 40.0%
! CATGAAGGAGCAACTTGCTT+TGG + chr4_3:71102874-71102893 Msa0660390:CDS 45.0%
CAGCTCAACACCCTGAAAAA+TGG - chr4_3:71103596-71103615 None:intergenic 45.0%
!!! CATTTTTCAGGGTGTTGAGC+TGG + chr4_3:71103594-71103613 Msa0660390:intron 45.0%
!!! TTTTTCAGGGTGTTGAGCTG+GGG + chr4_3:71103596-71103615 Msa0660390:intron 45.0%
CTGACGAAATAGGCTTACAG+AGG + chr4_3:71103681-71103700 Msa0660390:CDS 45.0%
!! AGGCCTTTTTGTTTGAGGGT+TGG - chr4_3:71103753-71103772 None:intergenic 45.0%
!! GCAGAAGGCCTTTTTGTTTG+AGG - chr4_3:71103758-71103777 None:intergenic 45.0%
TCGGTATCTGTGAGATCATC+AGG - chr4_3:71103791-71103810 None:intergenic 45.0%
ATGATCTCACAGATACCGAG+TGG + chr4_3:71103792-71103811 Msa0660390:CDS 45.0%
!!! CCATTTTCTAGAGCTCTTCC+TGG - chr4_3:71103975-71103994 None:intergenic 45.0%
!! CCAGGAAGAGCTCTAGAAAA+TGG + chr4_3:71103972-71103991 Msa0660390:CDS 45.0%
! AGCTGGCTTCTTCTTTCTTC+TGG + chr4_3:71104085-71104104 Msa0660390:intron 45.0%
GAATTGATGCACTCTGAGCA+TGG - chr4_3:71104300-71104319 None:intergenic 45.0%
TGCTCAGAGTGCATCAATTC+AGG + chr4_3:71104300-71104319 Msa0660390:intron 45.0%
ACGTCTCTGGTATTACCTAC+AGG - chr4_3:71104527-71104546 None:intergenic 45.0%
TCGTCTCAACTTTCAGACAG+TGG + chr4_3:71104707-71104726 Msa0660390:intron 45.0%
! ATTCTTCGCCTTTGGTGTGA+AGG + chr4_3:71104871-71104890 Msa0660390:intron 45.0%
AACACAGCAACCTCTCCTAA+TGG + chr4_3:71105079-71105098 Msa0660390:CDS 45.0%
! GGTTGAAAGCTGGCAAGTTT+TGG + chr4_3:71105150-71105169 Msa0660390:CDS 45.0%
ATTTCTTCTGCTCCGAAGGT+TGG + chr4_3:71105235-71105254 Msa0660390:CDS 45.0%
GCAATGACCAGTTAACAACG+GGG + chr4_3:71105350-71105369 Msa0660390:CDS 45.0%
AATGCATCCCCGTTGTTAAC+TGG - chr4_3:71105360-71105379 None:intergenic 45.0%
GTGTGCCTGTGAATTTCCAA+AGG + chr4_3:71105425-71105444 Msa0660390:CDS 45.0%
! CTTGGCCTTTGGAAATTCAC+AGG - chr4_3:71105433-71105452 None:intergenic 45.0%
! TTTTGTGAGGTCCCTTGTCT+TGG - chr4_3:71105451-71105470 None:intergenic 45.0%
ACAAGACTAGAGGCTGATGA+AGG + chr4_3:71105559-71105578 Msa0660390:CDS 45.0%
! TGTTTGTGTCGGTGCTTCAT+AGG - chr4_3:71105728-71105747 None:intergenic 45.0%
GAAGCTAAAAGAGAGCCAAC+AGG + chr4_3:71105948-71105967 Msa0660390:CDS 45.0%
! CACATCATGATATGGTGGAG+AGG + chr4_3:71105994-71106013 Msa0660390:CDS 45.0%
TTTGTGACATAGAGGAGGCA+AGG + chr4_3:71106084-71106103 Msa0660390:CDS 45.0%
!! ATGAAGTGCCCTTCTAAAGC+AGG + chr4_3:71106191-71106210 Msa0660390:CDS 45.0%
!! CTTTGAAGCCACTTTCTGGA+GGG - chr4_3:71106728-71106747 None:intergenic 45.0%
!! ACTTTGAAGCCACTTTCTGG+AGG - chr4_3:71106729-71106748 None:intergenic 45.0%
!! GTATTTAAAAATAAAAAAAA+TGG + chr4_3:71106759-71106778 Msa0660390:three_prime_UTR 5.0%
!! CAGATGTTGACTTGAGAGGG+AGG - chr4_3:71102638-71102657 None:intergenic 50.0%
!!! TTTTCAGGGTGTTGAGCTGG+GGG + chr4_3:71103597-71103616 Msa0660390:intron 50.0%
TGGGGGGAAGGATACTACAA+TGG + chr4_3:71103614-71103633 Msa0660390:CDS 50.0%
! AGCAGCTGAGAGAGCTTTTC+AGG + chr4_3:71103708-71103727 Msa0660390:CDS 50.0%
!! TCAGGTGAAAGTGCTGCAGA+AGG - chr4_3:71103773-71103792 None:intergenic 50.0%
GTTGCTGGATTCTTCGCCTT+TGG + chr4_3:71104863-71104882 Msa0660390:intron 50.0%
! CGCCTTTGGTGTGAAGGTAT+TGG + chr4_3:71104877-71104896 Msa0660390:intron 50.0%
AAACCATCAGTGTGCATCCG+TGG - chr4_3:71105502-71105521 None:intergenic 50.0%
! TTGTGTCGGTGCTTCATAGG+TGG - chr4_3:71105725-71105744 None:intergenic 50.0%
!! AGTGCCCTTCTAAAGCAGGA+AGG + chr4_3:71106195-71106214 Msa0660390:CDS 50.0%
!! TTTCAGGGTGTTGAGCTGGG+GGG + chr4_3:71103598-71103617 Msa0660390:intron 55.0%
CTCTGAGCATGGGAGAAGAC+AGG - chr4_3:71104289-71104308 None:intergenic 55.0%
! AGGTCCCTTGTCTTGGCCTT+TGG - chr4_3:71105444-71105463 None:intergenic 55.0%
GTTCCACGGATGCACACTGA+TGG + chr4_3:71105496-71105515 Msa0660390:CDS 55.0%
CAAGCAAGCCCTCCAGAAAG+TGG + chr4_3:71106717-71106736 Msa0660390:CDS 55.0%
TCTCTGTGTGACACGCCAGT+GGG - chr4_3:71106805-71106824 None:intergenic 55.0%
ATCTCTGTGTGACACGCCAG+TGG - chr4_3:71106806-71106825 None:intergenic 55.0%
TAGTCGCGCTCTCCTCGCAA+AGG + chr4_3:71104043-71104062 Msa0660390:CDS 60.0%
!! AGGGTGTTGAGCTGGGGGGA+AGG + chr4_3:71103602-71103621 Msa0660390:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 71102451 71107048 71102451 ID=Msa0660390;Name=Msa0660390
chr4_3 mRNA 71102451 71107048 71102451 ID=Msa0660390-mRNA-1;Parent=Msa0660390;Name=Msa0660390-mRNA-1;_AED=0.07;_eAED=0.07;_QI=409|0.83|1|1|1|1|7|295|601
chr4_3 exon 71102451 71102957 71102451 ID=Msa0660390-mRNA-1:exon:21267;Parent=Msa0660390-mRNA-1
chr4_3 exon 71103604 71103858 71103604 ID=Msa0660390-mRNA-1:exon:21268;Parent=Msa0660390-mRNA-1
chr4_3 exon 71103968 71104064 71103968 ID=Msa0660390-mRNA-1:exon:21269;Parent=Msa0660390-mRNA-1
chr4_3 exon 71104723 71104779 71104723 ID=Msa0660390-mRNA-1:exon:21270;Parent=Msa0660390-mRNA-1
chr4_3 exon 71104893 71105672 71104893 ID=Msa0660390-mRNA-1:exon:21271;Parent=Msa0660390-mRNA-1
chr4_3 exon 71105876 71106322 71105876 ID=Msa0660390-mRNA-1:exon:21272;Parent=Msa0660390-mRNA-1
chr4_3 exon 71106682 71107048 71106682 ID=Msa0660390-mRNA-1:exon:21273;Parent=Msa0660390-mRNA-1
chr4_3 five_prime_UTR 71102451 71102859 71102451 ID=Msa0660390-mRNA-1:five_prime_utr;Parent=Msa0660390-mRNA-1
chr4_3 CDS 71102860 71102957 71102860 ID=Msa0660390-mRNA-1:cds;Parent=Msa0660390-mRNA-1
chr4_3 CDS 71103604 71103858 71103604 ID=Msa0660390-mRNA-1:cds;Parent=Msa0660390-mRNA-1
chr4_3 CDS 71103968 71104064 71103968 ID=Msa0660390-mRNA-1:cds;Parent=Msa0660390-mRNA-1
chr4_3 CDS 71104723 71104779 71104723 ID=Msa0660390-mRNA-1:cds;Parent=Msa0660390-mRNA-1
chr4_3 CDS 71104893 71105672 71104893 ID=Msa0660390-mRNA-1:cds;Parent=Msa0660390-mRNA-1
chr4_3 CDS 71105876 71106322 71105876 ID=Msa0660390-mRNA-1:cds;Parent=Msa0660390-mRNA-1
chr4_3 CDS 71106682 71106753 71106682 ID=Msa0660390-mRNA-1:cds;Parent=Msa0660390-mRNA-1
chr4_3 three_prime_UTR 71106754 71107048 71106754 ID=Msa0660390-mRNA-1:three_prime_utr;Parent=Msa0660390-mRNA-1
Gene Sequence

>Msa0660390

ATGGTGCCACAAAACATGAAGGAGCAACTTGCTTTGGCAGTTAGAAGCATTCAATGGAGCTATGTAATATTCTGGTCTGAATCTGTTAACCAACCAGGGGTGTTGAGCTGGGGGGAAGGATACTACAATGGAGAGATTAAGACAAGGAAAACAAGTCAAGGAGTGGAACTTAGTTCTGACGAAATAGGCTTACAGAGGAGTGAGCAGCTGAGAGAGCTTTTCAGGTCCCTCAAAACAGTAGATACCAACCCTCAAACAAAAAGGCCTTCTGCAGCACTTTCACCTGATGATCTCACAGATACCGAGTGGTACTATTTGGTTTGCATGTCCTTTGTATTCAACATTGGCCAAGGTTTACCAGGAAGAGCTCTAGAAAATGGCCAACCAATTTGGCTAATTGATGCTGATTCTGTTGATTGCAAAGTGTTTAGTCGCGCTCTCCTCGCAAAGACAGTGGTGTGTTTTCCTTTCATGAAAGGGGTTATTGAGCTAGGCACAACCGATCACGTATTGGAAGATCTCAGTCTCATTCAACAGATCAAAACTTCTTTATCGAATAGTCTAAGCGTCGATGACCCTATTAACGCTCGAGCTACATTGAATTCGAGAAATAACGAAGGTGTTGCTTGTGTAGCATTTGATGATAATGATTATGATGTTGAATTAATTCCAGAAGTTGGATATGACATAATCAACACAGCAACCTCTCCTAATGGTAGCTCAAATGCATTACAAGCCAATCAACTACCAAATGAAACATTCATGGTTGAAAGCTGGCAAGTTTTGGATGATGATTTGAGCAACTGTGTTCATAACTCCGTGAATTCAAGTGACTGCATATCACAAAATATTTCTTCTGCTCCGAAGGTTGGAGAAGATTGCAATAATAACCAAAAAATGAGCTTAGTGGATCCTCTAAGTGAAGATTGGCATTATCAGAAAATTCTTTCAGAACTTTTAAAAAGCAATGACCAGTTAACAACGGGGATGCATTTTCAAAACTTTCATCAAGAATCAAGCTTTTGTGTTTGGAACAAAGGTGTGCCTGTGAATTTCCAAAGGCCAAGACAAGGGACCTCACAAAAGTTATTGAAGAAGATTTTGGTCGAAGTTCCACGGATGCACACTGATGGTTTGCTTGAATCTCAAGAGGAGAATGACTATAGAGAAGGTACAAGACTAGAGGCTGATGAAGGTATGAACCATGTTTTGTCAGAAAGAAGGAGAAGAGCAAAGCTAAATGAAAGGTTTTTAACTCTTAGATCAATGGTTCCTTCAAATAGTAAGGATGACAAAGTTTCTATACTAGATGATGCAATTGAATACCTTAGAAAGCTTGAGAAAAAGATAAGAGAGTTGGAAGCTAAAAGAGAGCCAACAGGTATAGAGTCTAGAAGTAAAAAATCACATCATGATATGGTGGAGAGGACTTCTGATCAATACTATAATAACAAAACTAACAATGGGAAGAAACCTATGGTGAAAAAGAGGAAAATTTGTGACATAGAGGAGGCAAGGAGAGAGATGTGTTCAGATGCTTCAAAAGGAAGTTCTAATAGGAATGTTAATGTCAGTATGAGTGACAATGGAGTTGTAATTGAAATGAAGTGCCCTTCTAAAGCAGGAAGGATATTAGAAATTATGGAAGCAGTTAACAATCTCAACATAGATTTTAATTCAGTTCAATCAACAGAAGAAGCTGATGGGAGTCTTCATCTAATCATTAAATCTAAGTTCAAAGGACCAGCTAATGCAACAACAAAAAGGATCAAGCAAGCCCTCCAGAAAGTGGCTTCAAAGTTTTGA
Protein sequence

>Msa0660390

MVPQNMKEQLALAVRSIQWSYVIFWSESVNQPGVLSWGEGYYNGEIKTRKTSQGVELSSDEIGLQRSEQLRELFRSLKTVDTNPQTKRPSAALSPDDLTDTEWYYLVCMSFVFNIGQGLPGRALENGQPIWLIDADSVDCKVFSRALLAKTVVCFPFMKGVIELGTTDHVLEDLSLIQQIKTSLSNSLSVDDPINARATLNSRNNEGVACVAFDDNDYDVELIPEVGYDIINTATSPNGSSNALQANQLPNETFMVESWQVLDDDLSNCVHNSVNSSDCISQNISSAPKVGEDCNNNQKMSLVDPLSEDWHYQKILSELLKSNDQLTTGMHFQNFHQESSFCVWNKGVPVNFQRPRQGTSQKLLKKILVEVPRMHTDGLLESQEENDYREGTRLEADEGMNHVLSERRRRAKLNERFLTLRSMVPSNSKDDKVSILDDAIEYLRKLEKKIRELEAKREPTGIESRSKKSHHDMVERTSDQYYNNKTNNGKKPMVKKRKICDIEEARREMCSDASKGSSNRNVNVSMSDNGVVIEMKCPSKAGRILEIMEAVNNLNIDFNSVQSTEEADGSLHLIIKSKFKGPANATTKRIKQALQKVASKF*