AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1375310

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1375310 MtrunA17_Chr8g0386921 96.205 606 18 1 1 601 1 606 0.0 1206
Msa1375310 MtrunA17_Chr1g0185621 55.978 184 72 3 4 182 12 191 2.09e-61 215
Msa1375310 MtrunA17_Chr1g0185621 32.042 284 150 8 302 564 359 620 6.72e-24 106
Msa1375310 MtrunA17_Chr5g0411341 34.104 173 94 6 19 181 60 222 3.39e-22 101
Msa1375310 MtrunA17_Chr5g0411341 47.761 67 33 1 397 463 489 553 2.01e-11 67.0
Msa1375310 MtrunA17_Chr5g0411331 33.684 190 107 7 4 184 29 208 1.03e-21 95.1
Msa1375310 MtrunA17_Chr8g0366751 28.906 256 140 12 19 253 69 303 2.89e-17 85.5
Msa1375310 MtrunA17_Chr8g0366751 49.180 61 31 0 397 457 458 518 1.86e-11 67.0
Msa1375310 MtrunA17_Chr7g0225901 41.667 84 49 0 382 465 69 152 3.29e-14 72.8
Msa1375310 MtrunA17_Chr7g0275821 45.238 84 38 1 397 472 248 331 8.92e-14 73.6
Msa1375310 MtrunA17_Chr3g0131691 33.962 159 83 4 402 557 299 438 1.64e-13 73.2
Msa1375310 MtrunA17_Chr5g0400661 26.238 202 111 6 374 560 117 295 2.30e-13 71.6
Msa1375310 MtrunA17_Chr1g0211081 29.630 189 111 6 381 557 297 475 4.46e-13 72.0
Msa1375310 MtrunA17_Chr8g0346161 57.143 56 24 0 400 455 290 345 1.91e-12 69.7
Msa1375310 MtrunA17_Chr6g0468461 44.776 67 37 0 398 464 170 236 2.70e-12 68.6
Msa1375310 MtrunA17_Chr6g0468491 37.634 93 54 1 372 464 112 200 4.24e-12 67.4
Msa1375310 MtrunA17_Chr4g0049331 43.284 67 38 0 391 457 125 191 7.67e-12 66.6
Msa1375310 MtrunA17_Chr8g0346151 50.000 70 30 1 400 469 278 342 1.00e-11 67.4
Msa1375310 MtrunA17_Chr7g0260841 50.820 61 30 0 397 457 351 411 1.06e-11 67.4
Msa1375310 MtrunA17_Chr2g0280161 24.020 204 130 2 398 601 174 352 3.53e-11 65.1
Msa1375310 MtrunA17_Chr4g0002801 23.415 205 129 3 400 600 151 331 3.72e-11 64.7
Msa1375310 MtrunA17_Chr4g0054551 41.791 67 39 0 398 464 152 218 5.37e-11 64.3
Msa1375310 MtrunA17_Chr2g0333621 24.623 199 121 4 400 594 137 310 5.88e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1375310 AT5G41315.2 43.293 656 282 20 2 598 18 642 4.64e-157 465
Msa1375310 AT5G41315.3 43.293 656 282 20 2 598 15 639 4.86e-157 465
Msa1375310 AT5G41315.1 43.293 656 282 20 2 598 10 634 4.95e-157 465
Msa1375310 AT1G63650.3 42.994 628 284 16 2 598 9 593 2.88e-156 461
Msa1375310 AT1G63650.1 42.994 628 284 16 2 598 9 593 2.88e-156 461
Msa1375310 AT1G63650.2 42.994 628 284 16 2 598 9 593 2.88e-156 461
Msa1375310 AT4G09820.1 29.748 595 304 17 10 597 24 511 2.78e-69 233
Msa1375310 AT4G00480.3 50.505 198 76 4 6 184 23 217 1.82e-54 193
Msa1375310 AT4G00480.3 28.000 275 143 8 308 563 250 488 8.10e-16 80.9
Msa1375310 AT4G00480.1 50.505 198 76 4 6 184 23 217 3.06e-54 193
Msa1375310 AT4G00480.1 28.803 309 164 9 308 597 250 521 1.29e-20 95.9
Msa1375310 AT4G00480.2 50.505 198 76 4 6 184 23 217 1.23e-53 192
Msa1375310 AT4G00480.2 28.803 309 164 9 308 597 250 521 1.21e-20 96.3
Msa1375310 AT1G32640.1 32.948 173 100 5 19 181 83 249 3.32e-20 95.1
Msa1375310 AT1G32640.1 49.180 61 31 0 397 457 448 508 4.20e-11 66.2
Msa1375310 AT4G17880.1 29.609 179 103 5 19 182 78 248 3.75e-18 88.6
Msa1375310 AT4G17880.1 50.000 62 31 0 397 458 412 473 7.46e-12 68.6
Msa1375310 AT1G01260.1 32.812 192 111 6 17 198 64 247 2.44e-17 86.3
Msa1375310 AT1G01260.1 52.239 67 32 0 398 464 430 496 2.46e-13 73.6
Msa1375310 AT1G01260.2 32.812 192 111 6 17 198 64 247 2.44e-17 86.3
Msa1375310 AT1G01260.2 52.239 67 32 0 398 464 430 496 2.46e-13 73.6
Msa1375310 AT1G01260.3 32.812 192 111 6 17 198 64 247 2.44e-17 86.3
Msa1375310 AT1G01260.3 52.239 67 32 0 398 464 430 496 2.46e-13 73.6
Msa1375310 AT2G46510.1 30.000 180 106 5 17 182 64 237 2.54e-16 82.8
Msa1375310 AT2G46510.1 52.459 61 29 0 397 457 391 451 1.87e-12 70.5
Msa1375310 AT5G46830.1 30.939 181 112 5 19 187 49 228 8.34e-15 77.8
Msa1375310 AT5G46760.1 30.460 174 100 5 19 180 67 231 6.45e-14 75.1
Msa1375310 AT5G46760.1 30.061 163 92 3 397 559 411 551 2.19e-13 73.6
Msa1375310 AT3G26744.6 32.716 162 81 6 402 557 308 447 7.59e-14 74.7
Msa1375310 AT3G26744.1 32.716 162 81 6 402 557 308 447 8.54e-14 74.7
Msa1375310 AT3G26744.4 32.716 162 81 6 402 557 308 447 8.54e-14 74.7
Msa1375310 AT3G26744.2 32.716 162 81 6 402 557 308 447 8.54e-14 74.7
Msa1375310 AT4G16430.1 29.381 194 113 8 5 187 49 229 1.24e-13 73.9
Msa1375310 AT4G16430.1 51.613 62 30 0 397 458 316 377 2.44e-12 69.7
Msa1375310 AT1G12860.2 32.919 161 78 5 402 557 268 403 1.38e-13 73.6
Msa1375310 AT1G12860.1 32.919 161 78 5 402 557 268 403 1.43e-13 73.6
Msa1375310 AT4G37850.2 28.125 160 87 3 399 556 150 283 2.58e-13 72.0
Msa1375310 AT4G37850.1 28.125 160 87 3 399 556 150 283 2.58e-13 72.0
Msa1375310 AT2G22760.2 26.452 155 91 3 402 556 120 251 2.07e-12 68.6
Msa1375310 AT2G22760.1 26.452 155 91 3 402 556 120 251 2.97e-12 68.2
Msa1375310 AT2G22770.1 43.284 67 38 0 391 457 122 188 3.83e-11 65.1

Find 117 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTCTGTCACAACTTTCTT+TGG 0.194766 tig0019653:+25734 Msa1375310:five_prime_UTR
AAAACTTTGAAGCCACTTTC+TGG 0.199218 tig0019653:-29936 None:intergenic
AGGAAGGATATTAGAAATTA+TGG 0.249790 tig0019653:+29418 Msa1375310:CDS
TAGAAAATGGCCAACCAATT+TGG 0.253067 tig0019653:+27191 Msa1375310:CDS
TCAGCATCAATTAGCCAAAT+TGG 0.260352 tig0019653:-27205 None:intergenic
AATATCCTTCCTGCTTTAGA+AGG 0.272945 tig0019653:-29407 None:intergenic
AGATACCGAGTGGTACTATT+TGG 0.275916 tig0019653:+27008 Msa1375310:CDS
ATTATGTCATATCCAACTTC+TGG 0.286568 tig0019653:-28262 None:intergenic
AATGTAGCTCGAGCGTTAAT+AGG 0.287585 tig0019653:-28169 None:intergenic
TAGTCACAAATGAAAATTCT+TGG 0.304530 tig0019653:+30038 Msa1375310:three_prime_UTR
AAAGTTATTGAAGAAGATTT+TGG 0.310498 tig0019653:+28675 Msa1375310:CDS
AGGTCCCTTGTCTTGGCCTT+TGG 0.323833 tig0019653:-28648 None:intergenic
GAACTTAGTTCTGACGAAAT+AGG 0.323945 tig0019653:+26877 Msa1375310:CDS
GGTTGAAAGCTGGCAAGTTT+TGG 0.326038 tig0019653:+28357 Msa1375310:CDS
GCACTTGTAAATTGGTAGAT+AGG 0.328485 tig0019653:+30150 Msa1375310:three_prime_UTR
AATATTACCTTACTATTTGA+AGG 0.331430 tig0019653:-28865 None:intergenic
TTGTTTCAGCACTTGTAAAT+TGG 0.338805 tig0019653:+30142 Msa1375310:three_prime_UTR
CCAGGAAGAGCTCTAGAAAA+TGG 0.340134 tig0019653:+27178 Msa1375310:CDS
CTTCAAAAGGAAGTTCTAAT+AGG 0.340490 tig0019653:+29333 Msa1375310:CDS
AATGCATCCCCGTTGTTAAC+TGG 0.347653 tig0019653:-28564 None:intergenic
TTTGGAAACAATAACTGATA+TGG 0.348285 tig0019653:-25886 None:intergenic
TCATCTAATCATTAAATCTA+AGG 0.350741 tig0019653:+29508 Msa1375310:CDS
TAATGCCAATCTTCACTTAG+AGG 0.362258 tig0019653:-28505 None:intergenic
CAGCTAATGCAACAACAAAA+AGG 0.368472 tig0019653:+29899 Msa1375310:CDS
ATAGATTCATGTCAAATCAT+TGG 0.385491 tig0019653:-30202 None:intergenic
GTTGAATTAATTCCAGAAGT+TGG 0.399420 tig0019653:+28250 Msa1375310:CDS
AATGCATTTGAGCTACCATT+AGG 0.406315 tig0019653:-28301 None:intergenic
AGCAATGACCAGTTAACAAC+GGG 0.413039 tig0019653:+28556 Msa1375310:CDS
TCAACCATGAATGTTTCATT+TGG 0.414054 tig0019653:-28340 None:intergenic
CATGAAGGAGCAACTTGCTT+TGG 0.415492 tig0019653:+26080 Msa1375310:CDS
TCTCTGGAATAAATACCTAT+TGG 0.426774 tig0019653:+30102 Msa1375310:three_prime_UTR
TGTTTCATTTGGTAGTTGAT+TGG 0.427906 tig0019653:-28329 None:intergenic
ACTACCAAATGAAACATTCA+TGG 0.431417 tig0019653:+28336 Msa1375310:CDS
TTGCAATCTTCTCCAACCTT+CGG 0.434210 tig0019653:-28454 None:intergenic
ATGTAGCTCGAGCGTTAATA+GGG 0.437263 tig0019653:-28168 None:intergenic
ATACCAACCCTCAAACAAAA+AGG 0.440617 tig0019653:+26953 Msa1375310:CDS
TTCAATTTAATTTCTCCCAC+TGG 0.443687 tig0019653:+29994 Msa1375310:three_prime_UTR
TCGGTATCTGTGAGATCATC+AGG 0.444790 tig0019653:-26994 None:intergenic
AATGGAGCTATGTAATATTC+TGG 0.445432 tig0019653:+26118 Msa1375310:CDS
AATGGTTCCTTCAAATAGTA+AGG 0.449741 tig0019653:+28858 Msa1375310:CDS
CTTCTAGACTCTATACCTGT+TGG 0.459759 tig0019653:-29170 None:intergenic
ATTTCTTCTGCTCCGAAGGT+TGG 0.465687 tig0019653:+28442 Msa1375310:CDS
CTTGGCCTTTGGAAATTCAC+AGG 0.474066 tig0019653:-28637 None:intergenic
AACACAGCAACCTCTCCTAA+TGG 0.474418 tig0019653:+28286 Msa1375310:CDS
TATAATAACAAAACTAACAA+TGG 0.477360 tig0019653:+29239 Msa1375310:CDS
ATGAAAGGGGTTATTGAGCT+AGG 0.483817 tig0019653:+27951 Msa1375310:CDS
TGGCAGTTAGAAGCATTCAA+TGG 0.489433 tig0019653:+26100 Msa1375310:CDS
ATAATAACAAAACTAACAAT+GGG 0.493585 tig0019653:+29240 Msa1375310:CDS
TGGATCCTCTAAGTGAAGAT+TGG 0.499708 tig0019653:+28500 Msa1375310:CDS
AAATATTTCTTCTGCTCCGA+AGG 0.503521 tig0019653:+28438 Msa1375310:CDS
GTCCATGTTACATCACCAAT+AGG 0.505991 tig0019653:-30117 None:intergenic
TTGTGTGTTCTTAGTTTACC+AGG 0.508462 tig0019653:+27160 Msa1375310:intron
TATGCAGTCACTTGAATTCA+CGG 0.508466 tig0019653:-28410 None:intergenic
TCTGTTGCATAAGTAGATAA+TGG 0.508707 tig0019653:+26047 Msa1375310:exon
GATTCAGATGTTGACTTGAG+AGG 0.508977 tig0019653:-25845 None:intergenic
ATGTGTTCAGATGCTTCAAA+AGG 0.516460 tig0019653:+29320 Msa1375310:CDS
TCCTTCTTTCTGACAAAACA+TGG 0.517100 tig0019653:-28795 None:intergenic
GAGGAAAATTTGTGACATAG+AGG 0.518793 tig0019653:+29283 Msa1375310:CDS
AGTTTGTATCTTACCCTGGT+TGG 0.519375 tig0019653:-26155 None:intergenic
TTTGTATTCAACATTGGCCA+AGG 0.526754 tig0019653:+27042 Msa1375310:CDS
TCAATAACCCCTTTCATGAA+AGG 0.530003 tig0019653:-27945 None:intergenic
ATTCAGATGTTGACTTGAGA+GGG 0.536872 tig0019653:-25844 None:intergenic
AAACATTCATGGTTGAAAGC+TGG 0.541473 tig0019653:+28347 Msa1375310:CDS
ATGAAGTGCCCTTCTAAAGC+AGG 0.542240 tig0019653:+29398 Msa1375310:CDS
CATCAATTAGCCAAATTGGT+TGG 0.542518 tig0019653:-27201 None:intergenic
TACCTATTGGTGATGTAACA+TGG 0.542999 tig0019653:+30115 Msa1375310:three_prime_UTR
AATGCTATGTTCTGATAAGA+TGG 0.547033 tig0019653:-25802 None:intergenic
CTTTGAAGCCACTTTCTGGA+GGG 0.551118 tig0019653:-29932 None:intergenic
GAAGCTAAAAGAGAGCCAAC+AGG 0.551286 tig0019653:+29155 Msa1375310:CDS
TAACAATGGGAAGAAACCTA+TGG 0.559013 tig0019653:+29253 Msa1375310:CDS
GAAGAGCAAAGCTAAATGAA+AGG 0.559544 tig0019653:+28818 Msa1375310:CDS
CAGATGTTGACTTGAGAGGG+AGG 0.560326 tig0019653:-25841 None:intergenic
ATATCCTTCCTGCTTTAGAA+GGG 0.566065 tig0019653:-29406 None:intergenic
ATGTCCTTTGTATTCAACAT+TGG 0.570336 tig0019653:+27036 Msa1375310:CDS
CAATCAACAGAAGAAGCTGA+TGG 0.570848 tig0019653:+29479 Msa1375310:CDS
CAAGCAAGCCCTCCAGAAAG+TGG 0.573779 tig0019653:+29924 Msa1375310:CDS
TTTGTGACATAGAGGAGGCA+AGG 0.582275 tig0019653:+29291 Msa1375310:CDS
ACTTTGAAGCCACTTTCTGG+AGG 0.587869 tig0019653:-29933 None:intergenic
TTGTATTCAACATTGGCCAA+GGG 0.589483 tig0019653:+27043 Msa1375310:CDS
TCTGAATCTGTTAACCAACC+AGG 0.589945 tig0019653:+26141 Msa1375310:CDS
TAGTCGCGCTCTCCTCGCAA+AGG 0.589968 tig0019653:+27249 Msa1375310:CDS
TGGTTTGCTTGAATCTCAAG+AGG 0.591791 tig0019653:+28723 Msa1375310:CDS
AAAATCACATCATGATATGG+TGG 0.591939 tig0019653:+29196 Msa1375310:CDS
GTTCCACGGATGCACACTGA+TGG 0.593993 tig0019653:+28703 Msa1375310:CDS
ATCTCTGTGTGACACGCCAG+TGG 0.597772 tig0019653:-30010 None:intergenic
AATCAACAGAAGAAGCTGAT+GGG 0.598027 tig0019653:+29480 Msa1375310:CDS
ACAAGACTAGAGGCTGATGA+AGG 0.599190 tig0019653:+28766 Msa1375310:CDS
AATTTCCAAAGGCCAAGACA+AGG 0.606654 tig0019653:+28643 Msa1375310:CDS
ACCGAAAAGACTTACGTGAT+CGG 0.607356 tig0019653:-27979 None:intergenic
GAGGAGAATGACTATAGAGA+AGG 0.612043 tig0019653:+28742 Msa1375310:CDS
TCAGGTGAAAGTGCTGCAGA+AGG 0.614503 tig0019653:-26976 None:intergenic
AAGACAAGGAAAACAAGTCA+AGG 0.617178 tig0019653:+26850 Msa1375310:CDS
GAAAATTTGTGACATAGAGG+AGG 0.617806 tig0019653:+29286 Msa1375310:CDS
AAACCATCAGTGTGCATCCG+TGG 0.620753 tig0019653:-28706 None:intergenic
CTATGTTCTGATAAGATGGT+TGG 0.625847 tig0019653:-25798 None:intergenic
ATTTGAGCTACCATTAGGAG+AGG 0.628279 tig0019653:-28296 None:intergenic
CACATCATGATATGGTGGAG+AGG 0.629700 tig0019653:+29201 Msa1375310:CDS
AAGGAAAACAAGTCAAGGAG+TGG 0.630274 tig0019653:+26855 Msa1375310:CDS
CTGAATCTGTTAACCAACCA+GGG 0.631174 tig0019653:+26142 Msa1375310:CDS
AATGGTGCCACAAAACATGA+AGG 0.633238 tig0019653:+26065 Msa1375310:exon
TAGAGAAGGTACAAGACTAG+AGG 0.643862 tig0019653:+28756 Msa1375310:CDS
GTGTGCCTGTGAATTTCCAA+AGG 0.646463 tig0019653:+28632 Msa1375310:CDS
TTTCAGGGTGTTGAGCTGGG+GGG 0.650923 tig0019653:+26804 Msa1375310:intron
CTGATATGGCTACAAAAGTG+TGG 0.653779 tig0019653:-25872 None:intergenic
TCTCTGTGTGACACGCCAGT+GGG 0.655629 tig0019653:-30009 None:intergenic
GAGAAACATATACCTTTGCG+AGG 0.658095 tig0019653:-27261 None:intergenic
AATGTCAGTATGAGTGACAA+TGG 0.659345 tig0019653:+29362 Msa1375310:CDS
TTGGCCAATGTTGAATACAA+AGG 0.661616 tig0019653:-27040 None:intergenic
AAGCAATGACCAGTTAACAA+CGG 0.681259 tig0019653:+28555 Msa1375310:CDS
ATTTCCAAAGGCCAAGACAA+GGG 0.685503 tig0019653:+28644 Msa1375310:CDS
AGTGCCCTTCTAAAGCAGGA+AGG 0.694013 tig0019653:+29402 Msa1375310:CDS
GCAAACCAAATAGTACCACT+CGG 0.699870 tig0019653:-27013 None:intergenic
CTGACGAAATAGGCTTACAG+AGG 0.712274 tig0019653:+26887 Msa1375310:CDS
TTGAATTCGAGAAATAACGA+AGG 0.725975 tig0019653:+28190 Msa1375310:CDS
ACAATGGAGAGATTAAGACA+AGG 0.747987 tig0019653:+26836 Msa1375310:CDS
ATGATCTCACAGATACCGAG+TGG 0.748813 tig0019653:+26998 Msa1375310:CDS
GCAATGACCAGTTAACAACG+GGG 0.828924 tig0019653:+28557 Msa1375310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACTACTTTTTTTTTTTGAA+AGG - tig0019653:25710-25729 None:intergenic 15.0%
!! AGAAAACTATTAATAACTAT+TGG - tig0019653:27584-27603 None:intergenic 15.0%
!! TTTGGAAATTAATAGAATAA+AGG - tig0019653:27809-27828 None:intergenic 15.0%
!! ATTAATGTTATAAAAGACAA+TGG - tig0019653:28009-28028 None:intergenic 15.0%
!! TATAATAACAAAACTAACAA+TGG + tig0019653:29239-29258 Msa1375310:CDS 15.0%
!! ATAATAACAAAACTAACAAT+GGG + tig0019653:29240-29259 Msa1375310:CDS 15.0%
!! TATTTGAGTAAATAACAATT+TGG + tig0019653:29545-29564 Msa1375310:intron 15.0%
!!! ATTAACATTTTACAATTCTA+AGG - tig0019653:29603-29622 None:intergenic 15.0%
!! TAATAACATATCTAAATAGA+TGG - tig0019653:29642-29661 None:intergenic 15.0%
!! AAATATTGTTAATGTTATGT+AGG + tig0019653:29799-29818 Msa1375310:intron 15.0%
!! AATATTGTTAATGTTATGTA+GGG + tig0019653:29800-29819 Msa1375310:intron 15.0%
!!! ATATGTCATAAATTGTTTTC+AGG + tig0019653:26625-26644 Msa1375310:intron 20.0%
!! TGTACAATTTAAAAACAGAA+AGG - tig0019653:27113-27132 None:intergenic 20.0%
!! AAATTTACATGTGTTAAGAT+AGG + tig0019653:27629-27648 Msa1375310:intron 20.0%
!!! GATTTTTGGTTTCTAAAATT+TGG - tig0019653:27865-27884 None:intergenic 20.0%
!!! AAAGTTATTGAAGAAGATTT+TGG + tig0019653:28675-28694 Msa1375310:CDS 20.0%
!! AATATTACCTTACTATTTGA+AGG - tig0019653:28868-28887 None:intergenic 20.0%
!! ATTAAATACATTATTCATGC+AGG + tig0019653:29061-29080 Msa1375310:intron 20.0%
!! TAAAAAATCACATCATGATA+TGG + tig0019653:29193-29212 Msa1375310:CDS 20.0%
!! TCATCTAATCATTAAATCTA+AGG + tig0019653:29508-29527 Msa1375310:CDS 20.0%
!!! AATTTGGTATCTAAAATTGT+AGG + tig0019653:29561-29580 Msa1375310:intron 20.0%
!! AAACTTAGAGAATAATGTAA+GGG - tig0019653:29672-29691 None:intergenic 20.0%
!! ATATTGTTAATGTTATGTAG+GGG + tig0019653:29801-29820 Msa1375310:intron 20.0%
! TATATATATATATGCAGCAG+AGG - tig0019653:25769-25788 None:intergenic 25.0%
! TTTGGAAACAATAACTGATA+TGG - tig0019653:25889-25908 None:intergenic 25.0%
!!! TGTTTTTCAGTTACTAGATT+TGG - tig0019653:25907-25926 None:intergenic 25.0%
!! AAAAACAATCACTTCTGTTT+TGG + tig0019653:25920-25939 Msa1375310:five_prime_UTR 25.0%
! TAGCATAAACACATTTAATG+AGG - tig0019653:26196-26215 None:intergenic 25.0%
! AAACATGAACATATTCAAGA+AGG - tig0019653:26238-26257 None:intergenic 25.0%
! CATATAAAGTCTTAGTTTCA+AGG - tig0019653:26269-26288 None:intergenic 25.0%
!! CATCTAAGATAACAAATAAG+TGG - tig0019653:26400-26419 None:intergenic 25.0%
! ATGCTTAAGTCAATAATTGA+GGG - tig0019653:26565-26584 None:intergenic 25.0%
! TATGCTTAAGTCAATAATTG+AGG - tig0019653:26566-26585 None:intergenic 25.0%
! AGATTATCTTAGAGAGTTTA+TGG + tig0019653:26590-26609 Msa1375310:intron 25.0%
!! TATAAAGGCGTGTATAAAAA+GGG - tig0019653:27343-27362 None:intergenic 25.0%
!! TTATAAAGGCGTGTATAAAA+AGG - tig0019653:27344-27363 None:intergenic 25.0%
! GGTGTACTTATAAAAAGAAA+GGG + tig0019653:27375-27394 Msa1375310:intron 25.0%
! TAACATTTATCTTCTTCCTT+TGG + tig0019653:27445-27464 Msa1375310:intron 25.0%
! TGGAGTTCATTTATAATACA+AGG - tig0019653:27564-27583 None:intergenic 25.0%
! TATCCATCCTTATTACTATT+TGG + tig0019653:27704-27723 Msa1375310:intron 25.0%
! ATCCATCCTTATTACTATTT+GGG + tig0019653:27705-27724 Msa1375310:intron 25.0%
!!! AGATTATTAGTCTTTAGGTT+TGG - tig0019653:27827-27846 None:intergenic 25.0%
!!! GTCTTAGATTATTAGTCTTT+AGG - tig0019653:27832-27851 None:intergenic 25.0%
!! AAATTACACAATGCATTGAT+AGG - tig0019653:27887-27906 None:intergenic 25.0%
! ACATTATTACAAGAAGTTGA+GGG - tig0019653:28052-28071 None:intergenic 25.0%
! AACATTATTACAAGAAGTTG+AGG - tig0019653:28053-28072 None:intergenic 25.0%
!!! GTTTTTAACTCTTAGATCAA+TGG + tig0019653:28840-28859 Msa1375310:CDS 25.0%
! AATGATCAAGCTAAGAAATA+TGG - tig0019653:28904-28923 None:intergenic 25.0%
! CATAATATTGTATCAAACAC+AGG + tig0019653:28990-29009 Msa1375310:intron 25.0%
! AGGAAGGATATTAGAAATTA+TGG + tig0019653:29418-29437 Msa1375310:CDS 25.0%
! GAAACTTAGAGAATAATGTA+AGG - tig0019653:29673-29692 None:intergenic 25.0%
! TTGCAAAATGTTAATCAGAT+TGG - tig0019653:29763-29782 None:intergenic 25.0%
! TAGTCACAAATGAAAATTCT+TGG + tig0019653:30038-30057 Msa1375310:three_prime_UTR 25.0%
!! TAATAGAAAAAGTTAGTCTC+TGG + tig0019653:30086-30105 Msa1375310:three_prime_UTR 25.0%
! ATAGATTCATGTCAAATCAT+TGG - tig0019653:30205-30224 None:intergenic 25.0%
ATTTCTGTCACAACTTTCTT+TGG + tig0019653:25734-25753 Msa1375310:five_prime_UTR 30.0%
AATGCTATGTTCTGATAAGA+TGG - tig0019653:25805-25824 None:intergenic 30.0%
TCTGTTGCATAAGTAGATAA+TGG + tig0019653:26047-26066 Msa1375310:exon 30.0%
AATGGAGCTATGTAATATTC+TGG + tig0019653:26118-26137 Msa1375310:CDS 30.0%
!! TGCCAAAATTTGATTTGAGA+TGG + tig0019653:26306-26325 Msa1375310:intron 30.0%
!! GCCAAAATTTGATTTGAGAT+GGG + tig0019653:26307-26326 Msa1375310:intron 30.0%
! ACCCATCTCAAATCAAATTT+TGG - tig0019653:26311-26330 None:intergenic 30.0%
TGAAAAATGGTCAAGGAAAA+AGG - tig0019653:26789-26808 None:intergenic 30.0%
!! TTTTTCCTTGACCATTTTTC+AGG + tig0019653:26788-26807 Msa1375310:intron 30.0%
!! TTTTCCTTGACCATTTTTCA+GGG + tig0019653:26789-26808 Msa1375310:intron 30.0%
ATGTCCTTTGTATTCAACAT+TGG + tig0019653:27036-27055 Msa1375310:CDS 30.0%
ACTAGAAAGGAACACAAAAA+AGG - tig0019653:27087-27106 None:intergenic 30.0%
ACTAAGAACACACAAATTTG+AGG - tig0019653:27155-27174 None:intergenic 30.0%
TATGTTTCTCTTTCTTTAGC+TGG + tig0019653:27274-27293 Msa1375310:intron 30.0%
GCCTTTATAAACTCACAAAA+GGG + tig0019653:27354-27373 Msa1375310:intron 30.0%
! ACCCTTTTGTGAGTTTATAA+AGG - tig0019653:27358-27377 None:intergenic 30.0%
GGGTGTACTTATAAAAAGAA+AGG + tig0019653:27374-27393 Msa1375310:intron 30.0%
TGTTTAAGGAACAAAACCAA+AGG - tig0019653:27464-27483 None:intergenic 30.0%
TTAGACTAAACACTAAAGAG+TGG - tig0019653:27669-27688 None:intergenic 30.0%
TTCCCAAATAGTAATAAGGA+TGG - tig0019653:27710-27729 None:intergenic 30.0%
!! CAATGCATTGATAGGATTTT+TGG - tig0019653:27879-27898 None:intergenic 30.0%
! TGTGTTTTCCTTTCATGAAA+GGG + tig0019653:27937-27956 Msa1375310:CDS 30.0%
ACTTCTTGTAATAATGTTGC+TGG + tig0019653:28055-28074 Msa1375310:intron 30.0%
TTGAATTCGAGAAATAACGA+AGG + tig0019653:28190-28209 Msa1375310:CDS 30.0%
GTTGAATTAATTCCAGAAGT+TGG + tig0019653:28250-28269 Msa1375310:CDS 30.0%
ATTATGTCATATCCAACTTC+TGG - tig0019653:28265-28284 None:intergenic 30.0%
! TGTTTCATTTGGTAGTTGAT+TGG - tig0019653:28332-28351 None:intergenic 30.0%
ACTACCAAATGAAACATTCA+TGG + tig0019653:28336-28355 Msa1375310:CDS 30.0%
TCAACCATGAATGTTTCATT+TGG - tig0019653:28343-28362 None:intergenic 30.0%
TAACCAAAAAATGAGCTTAG+TGG + tig0019653:28480-28499 Msa1375310:CDS 30.0%
! AAGAATCAAGCTTTTGTGTT+TGG + tig0019653:28602-28621 Msa1375310:CDS 30.0%
! CTTCTTCAATAACTTTTGTG+AGG - tig0019653:28671-28690 None:intergenic 30.0%
AATGGTTCCTTCAAATAGTA+AGG + tig0019653:28858-28877 Msa1375310:CDS 30.0%
! TCTTTTTCTCAAGCTTTCTA+AGG - tig0019653:29124-29143 None:intergenic 30.0%
TGAGAAAAAGATAAGAGAGT+TGG + tig0019653:29133-29152 Msa1375310:CDS 30.0%
AAAATCACATCATGATATGG+TGG + tig0019653:29196-29215 Msa1375310:CDS 30.0%
!! ATTTTCCTCTTTTTCACCAT+AGG - tig0019653:29272-29291 None:intergenic 30.0%
! CTTCAAAAGGAAGTTCTAAT+AGG + tig0019653:29333-29352 Msa1375310:CDS 30.0%
TGAGATAATTGGTATTCTCA+TGG - tig0019653:29736-29755 None:intergenic 30.0%
! AGATTGGTTCTTGAGATAAT+TGG - tig0019653:29747-29766 None:intergenic 30.0%
!! TCCTTTTATTTGCAGTTCAA+AGG + tig0019653:29874-29893 Msa1375310:intron 30.0%
TCCTTTGAACTGCAAATAAA+AGG - tig0019653:29878-29897 None:intergenic 30.0%
! TTCAATTTAATTTCTCCCAC+TGG + tig0019653:29994-30013 Msa1375310:three_prime_UTR 30.0%
!! TCTCTGGAATAAATACCTAT+TGG + tig0019653:30102-30121 Msa1375310:three_prime_UTR 30.0%
TTGTTTCAGCACTTGTAAAT+TGG + tig0019653:30142-30161 Msa1375310:three_prime_UTR 30.0%
CTATGTTCTGATAAGATGGT+TGG - tig0019653:25801-25820 None:intergenic 35.0%
!! ATTCAGATGTTGACTTGAGA+GGG - tig0019653:25847-25866 None:intergenic 35.0%
AAACAGTTTGTATCTTACCC+TGG - tig0019653:26162-26181 None:intergenic 35.0%
! CTGCATTAAAGGTTTTTGCT+AGG + tig0019653:26486-26505 Msa1375310:intron 35.0%
CGATAAGCTGTTTATCAACA+AGG + tig0019653:26763-26782 Msa1375310:intron 35.0%
ACAATGGAGAGATTAAGACA+AGG + tig0019653:26836-26855 Msa1375310:CDS 35.0%
AAGACAAGGAAAACAAGTCA+AGG + tig0019653:26850-26869 Msa1375310:CDS 35.0%
!! GAACTTAGTTCTGACGAAAT+AGG + tig0019653:26877-26896 Msa1375310:CDS 35.0%
!! GTTGGTATCTACTGTTTTGA+GGG - tig0019653:26941-26960 None:intergenic 35.0%
ATACCAACCCTCAAACAAAA+AGG + tig0019653:26953-26972 Msa1375310:CDS 35.0%
TTGGCCAATGTTGAATACAA+AGG - tig0019653:27043-27062 None:intergenic 35.0%
TTTGTATTCAACATTGGCCA+AGG + tig0019653:27042-27061 Msa1375310:CDS 35.0%
TTGTATTCAACATTGGCCAA+GGG + tig0019653:27043-27062 Msa1375310:CDS 35.0%
AAAAGAGTGAGATTTACCCT+TGG - tig0019653:27062-27081 None:intergenic 35.0%
AACAGAAAGGCAAACTAGAA+AGG - tig0019653:27100-27119 None:intergenic 35.0%
TTGTGTGTTCTTAGTTTACC+AGG + tig0019653:27160-27179 Msa1375310:intron 35.0%
TAGAAAATGGCCAACCAATT+TGG + tig0019653:27191-27210 Msa1375310:CDS 35.0%
CATCAATTAGCCAAATTGGT+TGG - tig0019653:27204-27223 None:intergenic 35.0%
TCAGCATCAATTAGCCAAAT+TGG - tig0019653:27208-27227 None:intergenic 35.0%
CGCCTTTATAAACTCACAAA+AGG + tig0019653:27353-27372 Msa1375310:intron 35.0%
GACAGGTTCAAATGTGTTTA+AGG - tig0019653:27478-27497 None:intergenic 35.0%
TGTTAAGATAGGTCTTGCTT+TGG + tig0019653:27640-27659 Msa1375310:intron 35.0%
CAGGTTCCCAAATAGTAATA+AGG - tig0019653:27714-27733 None:intergenic 35.0%
ATTACTATTTGGGAACCTGT+AGG + tig0019653:27715-27734 Msa1375310:intron 35.0%
! GTGTGTTTTCCTTTCATGAA+AGG + tig0019653:27936-27955 Msa1375310:CDS 35.0%
! GTGTTTTCCTTTCATGAAAG+GGG + tig0019653:27938-27957 Msa1375310:CDS 35.0%
TCAATAACCCCTTTCATGAA+AGG - tig0019653:27948-27967 None:intergenic 35.0%
AATGCATTTGAGCTACCATT+AGG - tig0019653:28304-28323 None:intergenic 35.0%
AAACATTCATGGTTGAAAGC+TGG + tig0019653:28347-28366 Msa1375310:CDS 35.0%
TATGCAGTCACTTGAATTCA+CGG - tig0019653:28413-28432 None:intergenic 35.0%
AAATATTTCTTCTGCTCCGA+AGG + tig0019653:28438-28457 Msa1375310:CDS 35.0%
!!! GATCCACTAAGCTCATTTTT+TGG - tig0019653:28486-28505 None:intergenic 35.0%
TAATGCCAATCTTCACTTAG+AGG - tig0019653:28508-28527 None:intergenic 35.0%
AAGCAATGACCAGTTAACAA+CGG + tig0019653:28555-28574 Msa1375310:CDS 35.0%
!! AGCTTTTGTGTTTGGAACAA+AGG + tig0019653:28610-28629 Msa1375310:CDS 35.0%
! ACCATGTTTTGTCAGAAAGA+AGG + tig0019653:28794-28813 Msa1375310:CDS 35.0%
TCCTTCTTTCTGACAAAACA+TGG - tig0019653:28798-28817 None:intergenic 35.0%
GAAGAGCAAAGCTAAATGAA+AGG + tig0019653:28818-28837 Msa1375310:CDS 35.0%
TCTAGTGTTTGTGTTTGTGT+CGG - tig0019653:28946-28965 None:intergenic 35.0%
TAACAATGGGAAGAAACCTA+TGG + tig0019653:29253-29272 Msa1375310:CDS 35.0%
AGAAACCTATGGTGAAAAAG+AGG + tig0019653:29264-29283 Msa1375310:CDS 35.0%
GAGGAAAATTTGTGACATAG+AGG + tig0019653:29283-29302 Msa1375310:CDS 35.0%
GAAAATTTGTGACATAGAGG+AGG + tig0019653:29286-29305 Msa1375310:CDS 35.0%
ATGTGTTCAGATGCTTCAAA+AGG + tig0019653:29320-29339 Msa1375310:CDS 35.0%
AATGTCAGTATGAGTGACAA+TGG + tig0019653:29362-29381 Msa1375310:CDS 35.0%
!! ATATCCTTCCTGCTTTAGAA+GGG - tig0019653:29409-29428 None:intergenic 35.0%
! AATATCCTTCCTGCTTTAGA+AGG - tig0019653:29410-29429 None:intergenic 35.0%
AATCAACAGAAGAAGCTGAT+GGG + tig0019653:29480-29499 Msa1375310:CDS 35.0%
GGACTATAAGGACATTAAGT+TGG - tig0019653:29715-29734 None:intergenic 35.0%
! TGGTATTCTCATGGACTATA+AGG - tig0019653:29727-29746 None:intergenic 35.0%
TGTAGGGGACTAATTTGATA+AGG + tig0019653:29816-29835 Msa1375310:intron 35.0%
GTAGGGGACTAATTTGATAA+GGG + tig0019653:29817-29836 Msa1375310:intron 35.0%
!!! CTTTTTGTTGTTGCATTAGC+TGG - tig0019653:29901-29920 None:intergenic 35.0%
CAGCTAATGCAACAACAAAA+AGG + tig0019653:29899-29918 Msa1375310:CDS 35.0%
!! AAAACTTTGAAGCCACTTTC+TGG - tig0019653:29939-29958 None:intergenic 35.0%
!! TACCTATTGGTGATGTAACA+TGG + tig0019653:30115-30134 Msa1375310:three_prime_UTR 35.0%
GCACTTGTAAATTGGTAGAT+AGG + tig0019653:30150-30169 Msa1375310:three_prime_UTR 35.0%
!! GATTCAGATGTTGACTTGAG+AGG - tig0019653:25848-25867 None:intergenic 40.0%
CTGATATGGCTACAAAAGTG+TGG - tig0019653:25875-25894 None:intergenic 40.0%
!! AATGGTGCCACAAAACATGA+AGG + tig0019653:26065-26084 Msa1375310:exon 40.0%
! AGTTGCTCCTTCATGTTTTG+TGG - tig0019653:26075-26094 None:intergenic 40.0%
!! TGGCAGTTAGAAGCATTCAA+TGG + tig0019653:26100-26119 Msa1375310:CDS 40.0%
TCTGAATCTGTTAACCAACC+AGG + tig0019653:26141-26160 Msa1375310:CDS 40.0%
CTGAATCTGTTAACCAACCA+GGG + tig0019653:26142-26161 Msa1375310:CDS 40.0%
AGTTTGTATCTTACCCTGGT+TGG - tig0019653:26158-26177 None:intergenic 40.0%
! GCTACTACTTGCTGCATTAA+AGG + tig0019653:26475-26494 Msa1375310:intron 40.0%
AACACCCTGAAAAATGGTCA+AGG - tig0019653:26796-26815 None:intergenic 40.0%
!!! ATTTTTCAGGGTGTTGAGCT+GGG + tig0019653:26801-26820 Msa1375310:intron 40.0%
AAGGAAAACAAGTCAAGGAG+TGG + tig0019653:26855-26874 Msa1375310:CDS 40.0%
!! GGTTGGTATCTACTGTTTTG+AGG - tig0019653:26942-26961 None:intergenic 40.0%
!! CAGAAGGCCTTTTTGTTTGA+GGG - tig0019653:26963-26982 None:intergenic 40.0%
AGATACCGAGTGGTACTATT+TGG + tig0019653:27008-27027 Msa1375310:CDS 40.0%
GCAAACCAAATAGTACCACT+CGG - tig0019653:27016-27035 None:intergenic 40.0%
GAGAAACATATACCTTTGCG+AGG - tig0019653:27264-27283 None:intergenic 40.0%
AAGGCGTGTATAAAAAGGGA+CGG - tig0019653:27339-27358 None:intergenic 40.0%
AATTGATGCACTCTGAGCAT+GGG - tig0019653:27505-27524 None:intergenic 40.0%
TCAATGTAATTGCACGTCTC+TGG - tig0019653:27746-27765 None:intergenic 40.0%
ATGAAAGGGGTTATTGAGCT+AGG + tig0019653:27951-27970 Msa1375310:CDS 40.0%
! ACCGATCACGTAAGTCTTTT+CGG + tig0019653:27978-27997 Msa1375310:intron 40.0%
ACCGAAAAGACTTACGTGAT+CGG - tig0019653:27982-28001 None:intergenic 40.0%
TTCCAATACCTTCACACCAA+AGG - tig0019653:28089-28108 None:intergenic 40.0%
ATGTAGCTCGAGCGTTAATA+GGG - tig0019653:28171-28190 None:intergenic 40.0%
AATGTAGCTCGAGCGTTAAT+AGG - tig0019653:28172-28191 None:intergenic 40.0%
ATTTGAGCTACCATTAGGAG+AGG - tig0019653:28299-28318 None:intergenic 40.0%
TTGCAATCTTCTCCAACCTT+CGG - tig0019653:28457-28476 None:intergenic 40.0%
TGGATCCTCTAAGTGAAGAT+TGG + tig0019653:28500-28519 Msa1375310:CDS 40.0%
AGCAATGACCAGTTAACAAC+GGG + tig0019653:28556-28575 Msa1375310:CDS 40.0%
AATTTCCAAAGGCCAAGACA+AGG + tig0019653:28643-28662 Msa1375310:CDS 40.0%
ATTTCCAAAGGCCAAGACAA+GGG + tig0019653:28644-28663 Msa1375310:CDS 40.0%
!! AGATTTTGGTCGAAGTTCCA+CGG + tig0019653:28689-28708 Msa1375310:CDS 40.0%
!! TGGTTTGCTTGAATCTCAAG+AGG + tig0019653:28723-28742 Msa1375310:CDS 40.0%
GAGGAGAATGACTATAGAGA+AGG + tig0019653:28742-28761 Msa1375310:CDS 40.0%
! TAGAGAAGGTACAAGACTAG+AGG + tig0019653:28756-28775 Msa1375310:CDS 40.0%
! GCACTGATACTTCAGATTGA+AGG - tig0019653:29021-29040 None:intergenic 40.0%
CTTCTAGACTCTATACCTGT+TGG - tig0019653:29173-29192 None:intergenic 40.0%
CAATCAACAGAAGAAGCTGA+TGG + tig0019653:29479-29498 Msa1375310:CDS 40.0%
GTCCATGTTACATCACCAAT+AGG - tig0019653:30120-30139 None:intergenic 40.0%
! CATGAAGGAGCAACTTGCTT+TGG + tig0019653:26080-26099 Msa1375310:CDS 45.0%
CAGCTCAACACCCTGAAAAA+TGG - tig0019653:26802-26821 None:intergenic 45.0%
!!! CATTTTTCAGGGTGTTGAGC+TGG + tig0019653:26800-26819 Msa1375310:intron 45.0%
!!! TTTTTCAGGGTGTTGAGCTG+GGG + tig0019653:26802-26821 Msa1375310:intron 45.0%
CTGACGAAATAGGCTTACAG+AGG + tig0019653:26887-26906 Msa1375310:CDS 45.0%
!! AGGCCTTTTTGTTTGAGGGT+TGG - tig0019653:26959-26978 None:intergenic 45.0%
!! GCAGAAGGCCTTTTTGTTTG+AGG - tig0019653:26964-26983 None:intergenic 45.0%
TCGGTATCTGTGAGATCATC+AGG - tig0019653:26997-27016 None:intergenic 45.0%
ATGATCTCACAGATACCGAG+TGG + tig0019653:26998-27017 Msa1375310:CDS 45.0%
!!! CCATTTTCTAGAGCTCTTCC+TGG - tig0019653:27181-27200 None:intergenic 45.0%
!! CCAGGAAGAGCTCTAGAAAA+TGG + tig0019653:27178-27197 Msa1375310:CDS 45.0%
! AGCTGGCTTCTTCTTTCTTC+TGG + tig0019653:27291-27310 Msa1375310:intron 45.0%
GAATTGATGCACTCTGAGCA+TGG - tig0019653:27506-27525 None:intergenic 45.0%
TGCTCAGAGTGCATCAATTC+AGG + tig0019653:27506-27525 Msa1375310:intron 45.0%
ACGTCTCTGGTATTACCTAC+AGG - tig0019653:27733-27752 None:intergenic 45.0%
TCGTCTCAACTTTCAGACAG+TGG + tig0019653:27914-27933 Msa1375310:intron 45.0%
! ATTCTTCGCCTTTGGTGTGA+AGG + tig0019653:28078-28097 Msa1375310:intron 45.0%
AACACAGCAACCTCTCCTAA+TGG + tig0019653:28286-28305 Msa1375310:CDS 45.0%
! GGTTGAAAGCTGGCAAGTTT+TGG + tig0019653:28357-28376 Msa1375310:CDS 45.0%
ATTTCTTCTGCTCCGAAGGT+TGG + tig0019653:28442-28461 Msa1375310:CDS 45.0%
GCAATGACCAGTTAACAACG+GGG + tig0019653:28557-28576 Msa1375310:CDS 45.0%
AATGCATCCCCGTTGTTAAC+TGG - tig0019653:28567-28586 None:intergenic 45.0%
GTGTGCCTGTGAATTTCCAA+AGG + tig0019653:28632-28651 Msa1375310:CDS 45.0%
! CTTGGCCTTTGGAAATTCAC+AGG - tig0019653:28640-28659 None:intergenic 45.0%
! TTTTGTGAGGTCCCTTGTCT+TGG - tig0019653:28658-28677 None:intergenic 45.0%
ACAAGACTAGAGGCTGATGA+AGG + tig0019653:28766-28785 Msa1375310:CDS 45.0%
! TGTTTGTGTCGGTGCTTCAT+AGG - tig0019653:28935-28954 None:intergenic 45.0%
GAAGCTAAAAGAGAGCCAAC+AGG + tig0019653:29155-29174 Msa1375310:CDS 45.0%
! CACATCATGATATGGTGGAG+AGG + tig0019653:29201-29220 Msa1375310:CDS 45.0%
TTTGTGACATAGAGGAGGCA+AGG + tig0019653:29291-29310 Msa1375310:CDS 45.0%
!! ATGAAGTGCCCTTCTAAAGC+AGG + tig0019653:29398-29417 Msa1375310:CDS 45.0%
!! CTTTGAAGCCACTTTCTGGA+GGG - tig0019653:29935-29954 None:intergenic 45.0%
!! ACTTTGAAGCCACTTTCTGG+AGG - tig0019653:29936-29955 None:intergenic 45.0%
!! GTATTTAAAAATAAAAAAAA+TGG + tig0019653:29966-29985 Msa1375310:three_prime_UTR 5.0%
!! CAGATGTTGACTTGAGAGGG+AGG - tig0019653:25844-25863 None:intergenic 50.0%
!!! TTTTCAGGGTGTTGAGCTGG+GGG + tig0019653:26803-26822 Msa1375310:intron 50.0%
TGGGGGGAAGGATACTACAA+TGG + tig0019653:26820-26839 Msa1375310:CDS 50.0%
! AGCAGCTGAGAGAGCTTTTC+AGG + tig0019653:26914-26933 Msa1375310:CDS 50.0%
!! TCAGGTGAAAGTGCTGCAGA+AGG - tig0019653:26979-26998 None:intergenic 50.0%
GTTGCTGGATTCTTCGCCTT+TGG + tig0019653:28070-28089 Msa1375310:intron 50.0%
! CGCCTTTGGTGTGAAGGTAT+TGG + tig0019653:28084-28103 Msa1375310:intron 50.0%
AAACCATCAGTGTGCATCCG+TGG - tig0019653:28709-28728 None:intergenic 50.0%
! TTGTGTCGGTGCTTCATAGG+TGG - tig0019653:28932-28951 None:intergenic 50.0%
!! AGTGCCCTTCTAAAGCAGGA+AGG + tig0019653:29402-29421 Msa1375310:CDS 50.0%
!! TTTCAGGGTGTTGAGCTGGG+GGG + tig0019653:26804-26823 Msa1375310:intron 55.0%
CTCTGAGCATGGGAGAAGAC+AGG - tig0019653:27495-27514 None:intergenic 55.0%
! AGGTCCCTTGTCTTGGCCTT+TGG - tig0019653:28651-28670 None:intergenic 55.0%
GTTCCACGGATGCACACTGA+TGG + tig0019653:28703-28722 Msa1375310:CDS 55.0%
CAAGCAAGCCCTCCAGAAAG+TGG + tig0019653:29924-29943 Msa1375310:CDS 55.0%
TCTCTGTGTGACACGCCAGT+GGG - tig0019653:30012-30031 None:intergenic 55.0%
ATCTCTGTGTGACACGCCAG+TGG - tig0019653:30013-30032 None:intergenic 55.0%
TAGTCGCGCTCTCCTCGCAA+AGG + tig0019653:27249-27268 Msa1375310:CDS 60.0%
!! AGGGTGTTGAGCTGGGGGGA+AGG + tig0019653:26808-26827 Msa1375310:intron 65.0%
Chromosome Type Strat End Strand Name
tig0019653 gene 25655 30256 25655 ID=Msa1375310;Name=Msa1375310
tig0019653 mRNA 25655 30256 25655 ID=Msa1375310-mRNA-1;Parent=Msa1375310;Name=Msa1375310-mRNA-1;_AED=0.07;_eAED=0.07;_QI=411|0.83|1|1|1|1|7|296|601
tig0019653 exon 25655 26163 25655 ID=Msa1375310-mRNA-1:exon:4426;Parent=Msa1375310-mRNA-1
tig0019653 exon 26810 27064 26810 ID=Msa1375310-mRNA-1:exon:4427;Parent=Msa1375310-mRNA-1
tig0019653 exon 27174 27270 27174 ID=Msa1375310-mRNA-1:exon:4428;Parent=Msa1375310-mRNA-1
tig0019653 exon 27930 27986 27930 ID=Msa1375310-mRNA-1:exon:4429;Parent=Msa1375310-mRNA-1
tig0019653 exon 28100 28879 28100 ID=Msa1375310-mRNA-1:exon:4430;Parent=Msa1375310-mRNA-1
tig0019653 exon 29083 29529 29083 ID=Msa1375310-mRNA-1:exon:4431;Parent=Msa1375310-mRNA-1
tig0019653 exon 29889 30256 29889 ID=Msa1375310-mRNA-1:exon:4432;Parent=Msa1375310-mRNA-1
tig0019653 five_prime_UTR 25655 26065 25655 ID=Msa1375310-mRNA-1:five_prime_utr;Parent=Msa1375310-mRNA-1
tig0019653 CDS 26066 26163 26066 ID=Msa1375310-mRNA-1:cds;Parent=Msa1375310-mRNA-1
tig0019653 CDS 26810 27064 26810 ID=Msa1375310-mRNA-1:cds;Parent=Msa1375310-mRNA-1
tig0019653 CDS 27174 27270 27174 ID=Msa1375310-mRNA-1:cds;Parent=Msa1375310-mRNA-1
tig0019653 CDS 27930 27986 27930 ID=Msa1375310-mRNA-1:cds;Parent=Msa1375310-mRNA-1
tig0019653 CDS 28100 28879 28100 ID=Msa1375310-mRNA-1:cds;Parent=Msa1375310-mRNA-1
tig0019653 CDS 29083 29529 29083 ID=Msa1375310-mRNA-1:cds;Parent=Msa1375310-mRNA-1
tig0019653 CDS 29889 29960 29889 ID=Msa1375310-mRNA-1:cds;Parent=Msa1375310-mRNA-1
tig0019653 three_prime_UTR 29961 30256 29961 ID=Msa1375310-mRNA-1:three_prime_utr;Parent=Msa1375310-mRNA-1
Gene Sequence

>Msa1375310

ATGGTGCCACAAAACATGAAGGAGCAACTTGCTTTGGCAGTTAGAAGCATTCAATGGAGCTATGTAATATTCTGGTCTGAATCTGTTAACCAACCAGGGGTGTTGAGCTGGGGGGAAGGATACTACAATGGAGAGATTAAGACAAGGAAAACAAGTCAAGGAGTGGAACTTAGTTCTGACGAAATAGGCTTACAGAGGAGTGAGCAGCTGAGAGAGCTTTTCAGGTCCCTCAAAACAGTAGATACCAACCCTCAAACAAAAAGGCCTTCTGCAGCACTTTCACCTGATGATCTCACAGATACCGAGTGGTACTATTTGGTTTGCATGTCCTTTGTATTCAACATTGGCCAAGGTTTACCAGGAAGAGCTCTAGAAAATGGCCAACCAATTTGGCTAATTGATGCTGATTCTGTTGATTGCAAAGTGTTTAGTCGCGCTCTCCTCGCAAAGACAGTGGTGTGTTTTCCTTTCATGAAAGGGGTTATTGAGCTAGGCACAACCGATCACGTATTGGAAGATCTCAGTCTCATTCAACAGATCAAAACTTCTTTATCGAATAGTCTAAGCGTCGATGACCCTATTAACGCTCGAGCTACATTGAATTCGAGAAATAACGAAGGTGTTGCTTGTGTAGCATTTGATGATAATGATTATGATGTTGAATTAATTCCAGAAGTTGGATATGACATAATCAACACAGCAACCTCTCCTAATGGTAGCTCAAATGCATTACAAGCCAATCAACTACCAAATGAAACATTCATGGTTGAAAGCTGGCAAGTTTTGGATGATGATTTGAGCAACTGTGTTCATAACTCCGTGAATTCAAGTGACTGCATATCACAAAATATTTCTTCTGCTCCGAAGGTTGGAGAAGATTGCAATAATAACCAAAAAATGAGCTTAGTGGATCCTCTAAGTGAAGATTGGCATTATCAGAAAATTCTTTCAGAACTTTTAAAAAGCAATGACCAGTTAACAACGGGGATGCATTTTCAAAACTTTCATCAAGAATCAAGCTTTTGTGTTTGGAACAAAGGTGTGCCTGTGAATTTCCAAAGGCCAAGACAAGGGACCTCACAAAAGTTATTGAAGAAGATTTTGGTCGAAGTTCCACGGATGCACACTGATGGTTTGCTTGAATCTCAAGAGGAGAATGACTATAGAGAAGGTACAAGACTAGAGGCTGATGAAGGTATGAACCATGTTTTGTCAGAAAGAAGGAGAAGAGCAAAGCTAAATGAAAGGTTTTTAACTCTTAGATCAATGGTTCCTTCAAATAGTAAGGATGACAAAGTTTCTATACTAGATGATGCAATTGAATACCTTAGAAAGCTTGAGAAAAAGATAAGAGAGTTGGAAGCTAAAAGAGAGCCAACAGGTATAGAGTCTAGAAGTAAAAAATCACATCATGATATGGTGGAGAGGACTTCTGATCAATACTATAATAACAAAACTAACAATGGGAAGAAACCTATGGTGAAAAAGAGGAAAATTTGTGACATAGAGGAGGCAAGGAGAGAGATGTGTTCAGATGCTTCAAAAGGAAGTTCTAATAGGAATGTTAATGTCAGTATGAGTGACAATGGAGTTGTAATTGAAATGAAGTGCCCTTCTAAAGCAGGAAGGATATTAGAAATTATGGAAGCAGTTAACAATCTCAACATAGATTTTAATTCAGTTCAATCAACAGAAGAAGCTGATGGGAGTCTTCATCTAATCATTAAATCTAAGTTCAAAGGACCAGCTAATGCAACAACAAAAAGGATCAAGCAAGCCCTCCAGAAAGTGGCTTCAAAGTTTTGA
Protein sequence

>Msa1375310

MVPQNMKEQLALAVRSIQWSYVIFWSESVNQPGVLSWGEGYYNGEIKTRKTSQGVELSSDEIGLQRSEQLRELFRSLKTVDTNPQTKRPSAALSPDDLTDTEWYYLVCMSFVFNIGQGLPGRALENGQPIWLIDADSVDCKVFSRALLAKTVVCFPFMKGVIELGTTDHVLEDLSLIQQIKTSLSNSLSVDDPINARATLNSRNNEGVACVAFDDNDYDVELIPEVGYDIINTATSPNGSSNALQANQLPNETFMVESWQVLDDDLSNCVHNSVNSSDCISQNISSAPKVGEDCNNNQKMSLVDPLSEDWHYQKILSELLKSNDQLTTGMHFQNFHQESSFCVWNKGVPVNFQRPRQGTSQKLLKKILVEVPRMHTDGLLESQEENDYREGTRLEADEGMNHVLSERRRRAKLNERFLTLRSMVPSNSKDDKVSILDDAIEYLRKLEKKIRELEAKREPTGIESRSKKSHHDMVERTSDQYYNNKTNNGKKPMVKKRKICDIEEARREMCSDASKGSSNRNVNVSMSDNGVVIEMKCPSKAGRILEIMEAVNNLNIDFNSVQSTEEADGSLHLIIKSKFKGPANATTKRIKQALQKVASKF*