AlfalfaGEDB | Msa1375310

M. sativa cultivar zhongmu-4 / Msa1375310

KEGG: -
GO: GO:0000902 GO:0000904 GO:0001101 GO:0001708 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0008544 GO:0009653 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009913 GO:0009957 GO:0009962 GO:0009963 GO:0009987 GO:0010026 GO:0010033 GO:0010090 GO:0010091 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0030855 GO:0031323 GO:0031326 GO:0031537 GO:0031539 GO:0031540 GO:0031542 GO:0032502 GO:0032870 GO:0032989 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048468 GO:0048518 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0060429 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141
PFAM: PF14215.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1375310	KEH21065.1	97.005	601	18	0	1	601	1	601	0.0	1210

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1375310	sp\|Q9FN69\|GL3_ARATH	43.293	656	282	20	2	598	10	634	4.87e-156	465

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1375310	A0A072U5D1	97.005	601	18	0	1	601	1	601	0.0	1210

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TFs/TRs:

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Gene ID	Type	Classification
Msa1375310	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0660390	Msa1375310	0.996336	3.011410e-226	-8.615850e-47
Msa0880250	Msa1375310	0.803976	2.696123e-49	-8.615850e-47
Msa0982670	Msa1375310	0.872392	3.295046e-67	-8.615850e-47
Msa1306610	Msa1375310	0.953188	4.746718e-111	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1375310	MtrunA17_Chr8g0386921	96.205	606	18	1	1	601	1	606	0.0	1206
Msa1375310	MtrunA17_Chr1g0185621	55.978	184	72	3	4	182	12	191	2.09e-61	215
Msa1375310	MtrunA17_Chr1g0185621	32.042	284	150	8	302	564	359	620	6.72e-24	106
Msa1375310	MtrunA17_Chr5g0411341	34.104	173	94	6	19	181	60	222	3.39e-22	101
Msa1375310	MtrunA17_Chr5g0411341	47.761	67	33	1	397	463	489	553	2.01e-11	67.0
Msa1375310	MtrunA17_Chr5g0411331	33.684	190	107	7	4	184	29	208	1.03e-21	95.1
Msa1375310	MtrunA17_Chr8g0366751	28.906	256	140	12	19	253	69	303	2.89e-17	85.5
Msa1375310	MtrunA17_Chr8g0366751	49.180	61	31	0	397	457	458	518	1.86e-11	67.0
Msa1375310	MtrunA17_Chr7g0225901	41.667	84	49	0	382	465	69	152	3.29e-14	72.8
Msa1375310	MtrunA17_Chr7g0275821	45.238	84	38	1	397	472	248	331	8.92e-14	73.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1375310	AT5G41315.2	43.293	656	282	20	2	598	18	642	4.64e-157	465
Msa1375310	AT5G41315.3	43.293	656	282	20	2	598	15	639	4.86e-157	465
Msa1375310	AT5G41315.1	43.293	656	282	20	2	598	10	634	4.95e-157	465
Msa1375310	AT1G63650.3	42.994	628	284	16	2	598	9	593	2.88e-156	461
Msa1375310	AT1G63650.1	42.994	628	284	16	2	598	9	593	2.88e-156	461
Msa1375310	AT1G63650.2	42.994	628	284	16	2	598	9	593	2.88e-156	461
Msa1375310	AT4G09820.1	29.748	595	304	17	10	597	24	511	2.78e-69	233
Msa1375310	AT4G00480.3	50.505	198	76	4	6	184	23	217	1.82e-54	193
Msa1375310	AT4G00480.3	28.000	275	143	8	308	563	250	488	8.10e-16	80.9
Msa1375310	AT4G00480.1	50.505	198	76	4	6	184	23	217	3.06e-54	193

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Find 117 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTTGAAGCCACTTTC+TGG	0.199218	tig0019653:-29936	None:intergenic
AAAATCACATCATGATATGG+TGG	0.591939	tig0019653:+29196	Msa1375310:CDS
AAACATTCATGGTTGAAAGC+TGG	0.541473	tig0019653:+28347	Msa1375310:CDS
AAACCATCAGTGTGCATCCG+TGG	0.620753	tig0019653:-28706	None:intergenic
AAAGTTATTGAAGAAGATTT+TGG	0.310498	tig0019653:+28675	Msa1375310:CDS
AAATATTTCTTCTGCTCCGA+AGG	0.503521	tig0019653:+28438	Msa1375310:CDS
AACACAGCAACCTCTCCTAA+TGG	0.474418	tig0019653:+28286	Msa1375310:CDS
AAGACAAGGAAAACAAGTCA+AGG	0.617178	tig0019653:+26850	Msa1375310:CDS
AAGCAATGACCAGTTAACAA+CGG	0.681259	tig0019653:+28555	Msa1375310:CDS
AAGGAAAACAAGTCAAGGAG+TGG	0.630274	tig0019653:+26855	Msa1375310:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTTCTGTCACAACTTTCTT+TGG	+	tig0019653:25734-25753	Msa1375310:five_prime_UTR	30.0%
AATGCTATGTTCTGATAAGA+TGG	-	tig0019653:25805-25824	None:intergenic	30.0%
TCTGTTGCATAAGTAGATAA+TGG	+	tig0019653:26047-26066	Msa1375310:exon	30.0%
AATGGAGCTATGTAATATTC+TGG	+	tig0019653:26118-26137	Msa1375310:CDS	30.0%
TGAAAAATGGTCAAGGAAAA+AGG	-	tig0019653:26789-26808	None:intergenic	30.0%
ATGTCCTTTGTATTCAACAT+TGG	+	tig0019653:27036-27055	Msa1375310:CDS	30.0%
ACTAGAAAGGAACACAAAAA+AGG	-	tig0019653:27087-27106	None:intergenic	30.0%
ACTAAGAACACACAAATTTG+AGG	-	tig0019653:27155-27174	None:intergenic	30.0%
TATGTTTCTCTTTCTTTAGC+TGG	+	tig0019653:27274-27293	Msa1375310:intron	30.0%
GCCTTTATAAACTCACAAAA+GGG	+	tig0019653:27354-27373	Msa1375310:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0019653	gene	25655	30256	25655	ID=Msa1375310;Name=Msa1375310
tig0019653	mRNA	25655	30256	25655	ID=Msa1375310-mRNA-1;Parent=Msa1375310;Name=Msa1375310-mRNA-1;_AED=0.07;_eAED=0.07;_QI=411\|0.83\|1\|1\|1\|1\|7\|296\|601
tig0019653	exon	25655	26163	25655	ID=Msa1375310-mRNA-1:exon:4426;Parent=Msa1375310-mRNA-1
tig0019653	exon	26810	27064	26810	ID=Msa1375310-mRNA-1:exon:4427;Parent=Msa1375310-mRNA-1
tig0019653	exon	27174	27270	27174	ID=Msa1375310-mRNA-1:exon:4428;Parent=Msa1375310-mRNA-1
tig0019653	exon	27930	27986	27930	ID=Msa1375310-mRNA-1:exon:4429;Parent=Msa1375310-mRNA-1
tig0019653	exon	28100	28879	28100	ID=Msa1375310-mRNA-1:exon:4430;Parent=Msa1375310-mRNA-1
tig0019653	exon	29083	29529	29083	ID=Msa1375310-mRNA-1:exon:4431;Parent=Msa1375310-mRNA-1
tig0019653	exon	29889	30256	29889	ID=Msa1375310-mRNA-1:exon:4432;Parent=Msa1375310-mRNA-1
tig0019653	five_prime_UTR	25655	26065	25655	ID=Msa1375310-mRNA-1:five_prime_utr;Parent=Msa1375310-mRNA-1
tig0019653	CDS	26066	26163	26066	ID=Msa1375310-mRNA-1:cds;Parent=Msa1375310-mRNA-1
tig0019653	CDS	26810	27064	26810	ID=Msa1375310-mRNA-1:cds;Parent=Msa1375310-mRNA-1
tig0019653	CDS	27174	27270	27174	ID=Msa1375310-mRNA-1:cds;Parent=Msa1375310-mRNA-1
tig0019653	CDS	27930	27986	27930	ID=Msa1375310-mRNA-1:cds;Parent=Msa1375310-mRNA-1
tig0019653	CDS	28100	28879	28100	ID=Msa1375310-mRNA-1:cds;Parent=Msa1375310-mRNA-1
tig0019653	CDS	29083	29529	29083	ID=Msa1375310-mRNA-1:cds;Parent=Msa1375310-mRNA-1
tig0019653	CDS	29889	29960	29889	ID=Msa1375310-mRNA-1:cds;Parent=Msa1375310-mRNA-1
tig0019653	three_prime_UTR	29961	30256	29961	ID=Msa1375310-mRNA-1:three_prime_utr;Parent=Msa1375310-mRNA-1

Gene Sequence

>Msa1375310

ATGGTGCCACAAAACATGAAGGAGCAACTTGCTTTGGCAGTTAGAAGCATTCAATGGAGCTATGTAATATTCTGGTCTGAATCTGTTAACCAACCAGGGGTGTTGAGCTGGGGGGAAGGATACTACAATGGAGAGATTAAGACAAGGAAAACAAGTCAAGGAGTGGAACTTAGTTCTGACGAAATAGGCTTACAGAGGAGTGAGCAGCTGAGAGAGCTTTTCAGGTCCCTCAAAACAGTAGATACCAACCCTCAAACAAAAAGGCCTTCTGCAGCACTTTCACCTGATGATCTCACAGATACCGAGTGGTACTATTTGGTTTGCATGTCCTTTGTATTCAACATTGGCCAAGGTTTACCAGGAAGAGCTCTAGAAAATGGCCAACCAATTTGGCTAATTGATGCTGATTCTGTTGATTGCAAAGTGTTTAGTCGCGCTCTCCTCGCAAAGACAGTGGTGTGTTTTCCTTTCATGAAAGGGGTTATTGAGCTAGGCACAACCGATCACGTATTGGAAGATCTCAGTCTCATTCAACAGATCAAAACTTCTTTATCGAATAGTCTAAGCGTCGATGACCCTATTAACGCTCGAGCTACATTGAATTCGAGAAATAACGAAGGTGTTGCTTGTGTAGCATTTGATGATAATGATTATGATGTTGAATTAATTCCAGAAGTTGGATATGACATAATCAACACAGCAACCTCTCCTAATGGTAGCTCAAATGCATTACAAGCCAATCAACTACCAAATGAAACATTCATGGTTGAAAGCTGGCAAGTTTTGGATGATGATTTGAGCAACTGTGTTCATAACTCCGTGAATTCAAGTGACTGCATATCACAAAATATTTCTTCTGCTCCGAAGGTTGGAGAAGATTGCAATAATAACCAAAAAATGAGCTTAGTGGATCCTCTAAGTGAAGATTGGCATTATCAGAAAATTCTTTCAGAACTTTTAAAAAGCAATGACCAGTTAACAACGGGGATGCATTTTCAAAACTTTCATCAAGAATCAAGCTTTTGTGTTTGGAACAAAGGTGTGCCTGTGAATTTCCAAAGGCCAAGACAAGGGACCTCACAAAAGTTATTGAAGAAGATTTTGGTCGAAGTTCCACGGATGCACACTGATGGTTTGCTTGAATCTCAAGAGGAGAATGACTATAGAGAAGGTACAAGACTAGAGGCTGATGAAGGTATGAACCATGTTTTGTCAGAAAGAAGGAGAAGAGCAAAGCTAAATGAAAGGTTTTTAACTCTTAGATCAATGGTTCCTTCAAATAGTAAGGATGACAAAGTTTCTATACTAGATGATGCAATTGAATACCTTAGAAAGCTTGAGAAAAAGATAAGAGAGTTGGAAGCTAAAAGAGAGCCAACAGGTATAGAGTCTAGAAGTAAAAAATCACATCATGATATGGTGGAGAGGACTTCTGATCAATACTATAATAACAAAACTAACAATGGGAAGAAACCTATGGTGAAAAAGAGGAAAATTTGTGACATAGAGGAGGCAAGGAGAGAGATGTGTTCAGATGCTTCAAAAGGAAGTTCTAATAGGAATGTTAATGTCAGTATGAGTGACAATGGAGTTGTAATTGAAATGAAGTGCCCTTCTAAAGCAGGAAGGATATTAGAAATTATGGAAGCAGTTAACAATCTCAACATAGATTTTAATTCAGTTCAATCAACAGAAGAAGCTGATGGGAGTCTTCATCTAATCATTAAATCTAAGTTCAAAGGACCAGCTAATGCAACAACAAAAAGGATCAAGCAAGCCCTCCAGAAAGTGGCTTCAAAGTTTTGA

Protein sequence

>Msa1375310

MVPQNMKEQLALAVRSIQWSYVIFWSESVNQPGVLSWGEGYYNGEIKTRKTSQGVELSSDEIGLQRSEQLRELFRSLKTVDTNPQTKRPSAALSPDDLTDTEWYYLVCMSFVFNIGQGLPGRALENGQPIWLIDADSVDCKVFSRALLAKTVVCFPFMKGVIELGTTDHVLEDLSLIQQIKTSLSNSLSVDDPINARATLNSRNNEGVACVAFDDNDYDVELIPEVGYDIINTATSPNGSSNALQANQLPNETFMVESWQVLDDDLSNCVHNSVNSSDCISQNISSAPKVGEDCNNNQKMSLVDPLSEDWHYQKILSELLKSNDQLTTGMHFQNFHQESSFCVWNKGVPVNFQRPRQGTSQKLLKKILVEVPRMHTDGLLESQEENDYREGTRLEADEGMNHVLSERRRRAKLNERFLTLRSMVPSNSKDDKVSILDDAIEYLRKLEKKIRELEAKREPTGIESRSKKSHHDMVERTSDQYYNNKTNNGKKPMVKKRKICDIEEARREMCSDASKGSSNRNVNVSMSDNGVVIEMKCPSKAGRILEIMEAVNNLNIDFNSVQSTEEADGSLHLIIKSKFKGPANATTKRIKQALQKVASKF*