AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1306610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1306610 MtrunA17_Chr8g0386921 96.198 605 18 1 1 600 1 605 0.0 1201
Msa1306610 MtrunA17_Chr1g0185621 55.978 184 72 3 4 182 12 191 1.09e-60 214
Msa1306610 MtrunA17_Chr1g0185621 32.042 284 150 8 302 564 359 620 7.04e-24 106
Msa1306610 MtrunA17_Chr5g0411341 34.104 173 94 6 19 181 60 222 4.62e-22 100
Msa1306610 MtrunA17_Chr5g0411341 46.377 69 35 1 397 465 489 555 2.51e-11 67.0
Msa1306610 MtrunA17_Chr5g0411331 33.158 190 108 7 4 184 29 208 9.36e-22 95.5
Msa1306610 MtrunA17_Chr8g0366751 28.906 256 140 12 19 253 69 303 3.75e-17 85.5
Msa1306610 MtrunA17_Chr8g0366751 49.180 61 31 0 397 457 458 518 2.07e-11 67.0
Msa1306610 MtrunA17_Chr7g0225901 41.667 84 49 0 382 465 69 152 3.27e-14 73.2
Msa1306610 MtrunA17_Chr7g0275821 45.238 84 38 1 397 472 248 331 1.09e-13 73.6
Msa1306610 MtrunA17_Chr5g0400661 26.238 202 111 6 374 560 117 295 2.87e-13 71.6
Msa1306610 MtrunA17_Chr3g0131691 33.962 159 83 4 402 557 299 438 2.92e-13 72.8
Msa1306610 MtrunA17_Chr1g0211081 29.630 189 111 6 381 557 297 475 5.45e-13 72.0
Msa1306610 MtrunA17_Chr8g0346161 57.143 56 24 0 400 455 290 345 2.16e-12 69.7
Msa1306610 MtrunA17_Chr6g0468461 44.776 67 37 0 398 464 170 236 3.16e-12 68.6
Msa1306610 MtrunA17_Chr6g0468491 37.634 93 54 1 372 464 112 200 4.89e-12 67.4
Msa1306610 MtrunA17_Chr4g0049331 43.284 67 38 0 391 457 125 191 1.01e-11 66.6
Msa1306610 MtrunA17_Chr8g0346151 50.000 70 30 1 400 469 278 342 1.17e-11 67.4
Msa1306610 MtrunA17_Chr7g0260841 50.820 61 30 0 397 457 351 411 1.31e-11 67.4
Msa1306610 MtrunA17_Chr4g0002801 23.415 205 129 3 400 600 151 331 4.37e-11 64.7
Msa1306610 MtrunA17_Chr2g0333621 24.510 204 125 4 400 599 137 315 6.35e-11 64.3
Msa1306610 MtrunA17_Chr4g0054551 41.791 67 39 0 398 464 152 218 6.42e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1306610 AT5G41315.2 43.206 655 284 20 2 598 18 642 3.67e-156 464
Msa1306610 AT5G41315.1 43.206 655 284 20 2 598 10 634 4.36e-156 464
Msa1306610 AT5G41315.3 43.206 655 284 20 2 598 15 639 5.26e-156 464
Msa1306610 AT1G63650.3 42.994 628 284 16 2 598 9 593 3.14e-155 461
Msa1306610 AT1G63650.1 42.994 628 284 16 2 598 9 593 3.14e-155 461
Msa1306610 AT1G63650.2 42.994 628 284 16 2 598 9 593 3.14e-155 461
Msa1306610 AT4G09820.1 29.748 595 304 17 10 597 24 511 1.16e-68 233
Msa1306610 AT4G00480.3 50.505 198 76 4 6 184 23 217 3.95e-54 193
Msa1306610 AT4G00480.3 28.364 275 142 9 308 563 250 488 8.04e-16 81.3
Msa1306610 AT4G00480.1 50.505 198 76 4 6 184 23 217 8.70e-54 193
Msa1306610 AT4G00480.1 28.803 309 164 9 308 597 250 521 1.82e-20 95.9
Msa1306610 AT4G00480.2 50.505 198 76 4 6 184 23 217 2.94e-53 192
Msa1306610 AT4G00480.2 28.797 316 169 9 308 604 250 528 1.21e-21 99.8
Msa1306610 AT1G32640.1 32.948 173 100 5 19 181 83 249 6.11e-20 94.7
Msa1306610 AT1G32640.1 49.180 61 31 0 397 457 448 508 5.46e-11 66.2
Msa1306610 AT4G17880.1 28.205 195 115 6 5 182 62 248 3.75e-18 89.0
Msa1306610 AT4G17880.1 50.000 62 31 0 397 458 412 473 8.85e-12 68.6
Msa1306610 AT1G01260.1 32.812 192 111 6 17 198 64 247 2.97e-17 85.9
Msa1306610 AT1G01260.1 52.239 67 32 0 398 464 430 496 2.73e-13 73.6
Msa1306610 AT1G01260.2 32.812 192 111 6 17 198 64 247 2.97e-17 85.9
Msa1306610 AT1G01260.2 52.239 67 32 0 398 464 430 496 2.73e-13 73.6
Msa1306610 AT1G01260.3 32.812 192 111 6 17 198 64 247 2.97e-17 85.9
Msa1306610 AT1G01260.3 52.239 67 32 0 398 464 430 496 2.73e-13 73.6
Msa1306610 AT2G46510.1 30.000 180 106 5 17 182 64 237 2.35e-16 83.2
Msa1306610 AT2G46510.1 51.562 64 31 0 397 460 391 454 2.36e-12 70.5
Msa1306610 AT5G46830.1 30.939 181 112 5 19 187 49 228 9.58e-15 77.8
Msa1306610 AT5G46760.1 30.460 174 100 5 19 180 67 231 6.69e-14 75.5
Msa1306610 AT5G46760.1 30.061 163 92 3 397 559 411 551 2.44e-13 73.6
Msa1306610 AT3G26744.6 32.716 162 81 6 402 557 308 447 1.39e-13 73.9
Msa1306610 AT3G26744.1 32.716 162 81 6 402 557 308 447 1.41e-13 73.9
Msa1306610 AT3G26744.4 32.716 162 81 6 402 557 308 447 1.41e-13 73.9
Msa1306610 AT3G26744.2 32.716 162 81 6 402 557 308 447 1.41e-13 73.9
Msa1306610 AT4G16430.1 29.381 194 113 8 5 187 49 229 1.57e-13 73.9
Msa1306610 AT4G16430.1 51.613 62 30 0 397 458 316 377 2.74e-12 70.1
Msa1306610 AT1G12860.2 32.919 161 78 5 402 557 268 403 2.30e-13 73.2
Msa1306610 AT1G12860.1 32.919 161 78 5 402 557 268 403 2.31e-13 73.2
Msa1306610 AT4G37850.2 28.125 160 87 3 399 556 150 283 2.65e-13 72.0
Msa1306610 AT4G37850.1 28.125 160 87 3 399 556 150 283 2.65e-13 72.0
Msa1306610 AT2G22760.2 26.452 155 91 3 402 556 120 251 2.11e-12 68.6
Msa1306610 AT2G22760.1 26.452 155 91 3 402 556 120 251 3.35e-12 68.2
Msa1306610 AT2G22770.1 43.284 67 38 0 391 457 122 188 4.71e-11 65.1

Find 119 sgRNAs with CRISPR-Local

Find 289 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGACGGAATCTTCATATTTC+AGG 0.153453 8_4:+1563902 None:intergenic
ATTTCTGTCACAACTTTCTT+TGG 0.194766 8_4:-1568622 Msa1306610:five_prime_UTR
AAAACTTTGAAGCCACTTTC+TGG 0.199218 8_4:+1564420 None:intergenic
AGGAAGGATATTAGAAATTA+TGG 0.249790 8_4:-1564938 Msa1306610:CDS
TAGAAAATGGCCAACCAATT+TGG 0.253067 8_4:-1567165 Msa1306610:CDS
TCAGCATCAATTAGCCAAAT+TGG 0.260352 8_4:+1567151 None:intergenic
AATATCCTTCCTGCTTTAGA+AGG 0.272945 8_4:+1564949 None:intergenic
AGATACCGAGTGGTACTATT+TGG 0.275916 8_4:-1567348 Msa1306610:CDS
ATTATGTCATATCCAACTTC+TGG 0.286568 8_4:+1566094 None:intergenic
AATGTAGCTCGAGCGTTAAT+AGG 0.287585 8_4:+1566187 None:intergenic
AAAGTTATTGAAGAAGATTT+TGG 0.310498 8_4:-1565681 Msa1306610:CDS
AGGTCCCTTGTCTTGGCCTT+TGG 0.323833 8_4:+1565708 None:intergenic
GAACTTAGTTCTGACGAAAT+AGG 0.323945 8_4:-1567479 Msa1306610:CDS
GGTTGAAAGCTGGCAAGTTT+TGG 0.326038 8_4:-1565999 Msa1306610:CDS
AATATTACCTTACTATTTGA+AGG 0.331430 8_4:+1565491 None:intergenic
CCAGGAAGAGCTCTAGAAAA+TGG 0.340134 8_4:-1567178 Msa1306610:CDS
CTTCAAAAGGAAGTTCTAAT+AGG 0.340490 8_4:-1565023 Msa1306610:CDS
AATGCATCCCCGTTGTTAAC+TGG 0.347653 8_4:+1565792 None:intergenic
TTTGGAAACAATAACTGATA+TGG 0.348285 8_4:+1568470 None:intergenic
TCATCTAATCATTAAATCTA+AGG 0.350741 8_4:-1564848 Msa1306610:intron
TAATGCCAATCTTCACTTAG+AGG 0.362258 8_4:+1565851 None:intergenic
CAGCTAATGCAACAACAAAA+AGG 0.368472 8_4:-1564457 Msa1306610:CDS
GTTGAATTAATTCCAGAAGT+TGG 0.399420 8_4:-1566106 Msa1306610:CDS
AAAACACCCCTGGTCAAATC+TGG 0.404631 8_4:-1563879 Msa1306610:CDS
AATGCATTTGAGCTACCATT+AGG 0.406315 8_4:+1566055 None:intergenic
AGCAATGACCAGTTAACAAC+GGG 0.413039 8_4:-1565800 Msa1306610:CDS
TCAACCATGAATGTTTCATT+TGG 0.414054 8_4:+1566016 None:intergenic
CATGAAGGAGCAACTTGCTT+TGG 0.415492 8_4:-1568276 Msa1306610:CDS
CCTGTAATATAGGCGAGTTC+CGG 0.418983 8_4:-1563962 Msa1306610:intron
TGTTTCATTTGGTAGTTGAT+TGG 0.427906 8_4:+1566027 None:intergenic
ACTACCAAATGAAACATTCA+TGG 0.431417 8_4:-1566020 Msa1306610:CDS
TTGCAATCTTCTCCAACCTT+CGG 0.434210 8_4:+1565902 None:intergenic
ATGTAGCTCGAGCGTTAATA+GGG 0.437263 8_4:+1566188 None:intergenic
GACGGAATCTTCATATTTCA+GGG 0.440160 8_4:+1563903 None:intergenic
ATACCAACCCTCAAACAAAA+AGG 0.440617 8_4:-1567403 Msa1306610:CDS
TCGGTATCTGTGAGATCATC+AGG 0.444790 8_4:+1567362 None:intergenic
AATGGAGCTATGTAATATTC+TGG 0.445432 8_4:-1568238 Msa1306610:CDS
AATGGTTCCTTCAAATAGTA+AGG 0.449741 8_4:-1565498 Msa1306610:intron
GAATCTTCATATTTCAGGGT+TGG 0.457075 8_4:+1563907 None:intergenic
CTTCTAGACTCTATACCTGT+TGG 0.459759 8_4:+1565186 None:intergenic
ATTTCTTCTGCTCCGAAGGT+TGG 0.465687 8_4:-1565914 Msa1306610:CDS
GGTCAAATCTGGCACACGCC+AGG 0.473472 8_4:-1563868 Msa1306610:CDS
CTTGGCCTTTGGAAATTCAC+AGG 0.474066 8_4:+1565719 None:intergenic
AACACAGCAACCTCTCCTAA+TGG 0.474418 8_4:-1566070 Msa1306610:CDS
TATAATAACAAAACTAACAA+TGG 0.477360 8_4:-1565117 Msa1306610:CDS
ATGAAAGGGGTTATTGAGCT+AGG 0.483817 8_4:-1566405 Msa1306610:CDS
GGCGTGTGCCAGATTTGACC+AGG 0.485969 8_4:+1563871 None:intergenic
TGGCAGTTAGAAGCATTCAA+TGG 0.489433 8_4:-1568256 Msa1306610:CDS
ATAATAACAAAACTAACAAT+GGG 0.493585 8_4:-1565116 Msa1306610:CDS
TGGATCCTCTAAGTGAAGAT+TGG 0.499708 8_4:-1565856 Msa1306610:CDS
AAATATTTCTTCTGCTCCGA+AGG 0.503521 8_4:-1565918 Msa1306610:CDS
TTGTGTGTTCTTAGTTTACC+AGG 0.508462 8_4:-1567196 Msa1306610:intron
TATGCAGTCACTTGAATTCA+CGG 0.508466 8_4:+1565946 None:intergenic
TCTGTTGCATAAGTAGATAA+TGG 0.508707 8_4:-1568309 Msa1306610:exon
GATTCAGATGTTGACTTGAG+AGG 0.508977 8_4:+1568511 None:intergenic
ATGTGTTCAGATGCTTCAAA+AGG 0.516460 8_4:-1565036 Msa1306610:CDS
TCCTTCTTTCTGACAAAACA+TGG 0.517100 8_4:+1565561 None:intergenic
GAGGAAAATTTGTGACATAG+AGG 0.518793 8_4:-1565073 Msa1306610:CDS
AGTTTGTATCTTACCCTGGT+TGG 0.519375 8_4:+1568201 None:intergenic
TTTGTATTCAACATTGGCCA+AGG 0.526754 8_4:-1567314 Msa1306610:CDS
TCAATAACCCCTTTCATGAA+AGG 0.530003 8_4:+1566411 None:intergenic
ATTCAGATGTTGACTTGAGA+GGG 0.536872 8_4:+1568512 None:intergenic
AAACATTCATGGTTGAAAGC+TGG 0.541473 8_4:-1566009 Msa1306610:CDS
ATGAAGTGCCCTTCTAAAGC+AGG 0.542240 8_4:-1564958 Msa1306610:CDS
CATCAATTAGCCAAATTGGT+TGG 0.542518 8_4:+1567155 None:intergenic
AATGCTATGTTCTGATAAGA+TGG 0.547033 8_4:+1568554 None:intergenic
CTTTGAAGCCACTTTCTGGA+GGG 0.551118 8_4:+1564424 None:intergenic
GAAGCTAAAAGAGAGCCAAC+AGG 0.551286 8_4:-1565201 Msa1306610:CDS
TAACAATGGGAAGAAACCTA+TGG 0.559013 8_4:-1565103 Msa1306610:CDS
GAAGAGCAAAGCTAAATGAA+AGG 0.559544 8_4:-1565538 Msa1306610:CDS
CAGATGTTGACTTGAGAGGG+AGG 0.560326 8_4:+1568515 None:intergenic
ATATCCTTCCTGCTTTAGAA+GGG 0.566065 8_4:+1564950 None:intergenic
ATGTCCTTTGTATTCAACAT+TGG 0.570336 8_4:-1567320 Msa1306610:CDS
CAATCAACAGAAGAAGCTGA+TGG 0.570848 8_4:-1564877 Msa1306610:CDS
CAAGCAAGCCCTCCAGAAAG+TGG 0.573779 8_4:-1564432 Msa1306610:CDS
TTTGTGACATAGAGGAGGCA+AGG 0.582275 8_4:-1565065 Msa1306610:CDS
ACTTTGAAGCCACTTTCTGG+AGG 0.587869 8_4:+1564423 None:intergenic
TTGTATTCAACATTGGCCAA+GGG 0.589483 8_4:-1567313 Msa1306610:intron
TCTGAATCTGTTAACCAACC+AGG 0.589945 8_4:-1568215 Msa1306610:CDS
TAGTCGCGCTCTCCTCGCAA+AGG 0.589968 8_4:-1567107 Msa1306610:intron
TGGTTTGCTTGAATCTCAAG+AGG 0.591791 8_4:-1565633 Msa1306610:CDS
AAAATCACATCATGATATGG+TGG 0.591939 8_4:-1565160 Msa1306610:CDS
GTTCCACGGATGCACACTGA+TGG 0.593993 8_4:-1565653 Msa1306610:CDS
GCACACGCCAGGTGCTGATG+TGG 0.597808 8_4:-1563857 Msa1306610:CDS
AATCAACAGAAGAAGCTGAT+GGG 0.598027 8_4:-1564876 Msa1306610:CDS
ACAAGACTAGAGGCTGATGA+AGG 0.599190 8_4:-1565590 Msa1306610:CDS
TGGCGCGCCACATCAGCACC+TGG 0.601590 8_4:+1563850 None:intergenic
AATTTCCAAAGGCCAAGACA+AGG 0.606654 8_4:-1565713 Msa1306610:CDS
ACCGAAAAGACTTACGTGAT+CGG 0.607356 8_4:+1566377 None:intergenic
GAGGAGAATGACTATAGAGA+AGG 0.612043 8_4:-1565614 Msa1306610:CDS
TCAGGTGAAAGTGCTGCAGA+AGG 0.614503 8_4:+1567380 None:intergenic
AAGACAAGGAAAACAAGTCA+AGG 0.617178 8_4:-1567506 Msa1306610:CDS
GAAAATTTGTGACATAGAGG+AGG 0.617806 8_4:-1565070 Msa1306610:CDS
AAACCATCAGTGTGCATCCG+TGG 0.620753 8_4:+1565650 None:intergenic
CTATGTTCTGATAAGATGGT+TGG 0.625847 8_4:+1568558 None:intergenic
ATTTGAGCTACCATTAGGAG+AGG 0.628279 8_4:+1566060 None:intergenic
CACATCATGATATGGTGGAG+AGG 0.629700 8_4:-1565155 Msa1306610:CDS
AAGGAAAACAAGTCAAGGAG+TGG 0.630274 8_4:-1567501 Msa1306610:CDS
CTGAATCTGTTAACCAACCA+GGG 0.631174 8_4:-1568214 Msa1306610:intron
AATGGTGCCACAAAACATGA+AGG 0.633238 8_4:-1568291 Msa1306610:CDS
GATTCCGTCGAAAACACCCC+TGG 0.635082 8_4:-1563889 Msa1306610:CDS
TAGAGAAGGTACAAGACTAG+AGG 0.643862 8_4:-1565600 Msa1306610:CDS
GTGTGCCTGTGAATTTCCAA+AGG 0.646463 8_4:-1565724 Msa1306610:CDS
GCGTGTGCCAGATTTGACCA+GGG 0.647431 8_4:+1563872 None:intergenic
TTTCAGGGTGTTGAGCTGGG+GGG 0.650923 8_4:-1567552 Msa1306610:intron
CTGATATGGCTACAAAAGTG+TGG 0.653779 8_4:+1568484 None:intergenic
GAGAAACATATACCTTTGCG+AGG 0.658095 8_4:+1567095 None:intergenic
AATGTCAGTATGAGTGACAA+TGG 0.659345 8_4:-1564994 Msa1306610:CDS
TTGGCCAATGTTGAATACAA+AGG 0.661616 8_4:+1567316 None:intergenic
CGTGTGCCAGATTTGACCAG+GGG 0.671473 8_4:+1563873 None:intergenic
AAGCAATGACCAGTTAACAA+CGG 0.681259 8_4:-1565801 Msa1306610:CDS
ATTTCCAAAGGCCAAGACAA+GGG 0.685503 8_4:-1565712 Msa1306610:CDS
AGTGCCCTTCTAAAGCAGGA+AGG 0.694013 8_4:-1564954 Msa1306610:CDS
GCAAACCAAATAGTACCACT+CGG 0.699870 8_4:+1567343 None:intergenic
CTGACGAAATAGGCTTACAG+AGG 0.712274 8_4:-1567469 Msa1306610:CDS
TTGAATTCGAGAAATAACGA+AGG 0.725975 8_4:-1566166 Msa1306610:CDS
ACAATGGAGAGATTAAGACA+AGG 0.747987 8_4:-1567520 Msa1306610:CDS
ATGATCTCACAGATACCGAG+TGG 0.748813 8_4:-1567358 Msa1306610:CDS
GCAATGACCAGTTAACAACG+GGG 0.828924 8_4:-1565799 Msa1306610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACTACTTTTTTTTTTTGAA+AGG + chr8_4:1563876-1563895 None:intergenic 15.0%
!! AGAAAACTATTAATAACTAT+TGG + chr8_4:1565750-1565769 None:intergenic 15.0%
!! TTTGGAAATTAATAGAATAA+AGG + chr8_4:1565975-1565994 None:intergenic 15.0%
!! ATTAATGTTATAAAAGACAA+TGG + chr8_4:1566175-1566194 None:intergenic 15.0%
!! TATAATAACAAAACTAACAA+TGG - chr8_4:1567405-1567424 Msa1306610:CDS 15.0%
!! ATAATAACAAAACTAACAAT+GGG - chr8_4:1567406-1567425 Msa1306610:CDS 15.0%
!! TATTTGAGTAAATAACAATT+TGG - chr8_4:1567711-1567730 Msa1306610:intron 15.0%
!!! ATTAACATTTTACAATTCTA+AGG + chr8_4:1567769-1567788 None:intergenic 15.0%
!! TAATAACATATCTAAATAGA+TGG + chr8_4:1567808-1567827 None:intergenic 15.0%
!! AAATATTGTTAATGTTATGT+AGG - chr8_4:1567965-1567984 Msa1306610:intron 15.0%
!! AATATTGTTAATGTTATGTA+GGG - chr8_4:1567966-1567985 Msa1306610:intron 15.0%
!!! ATATGTCATAAATTGTTTTC+AGG - chr8_4:1564791-1564810 Msa1306610:intron 20.0%
!! TGTACAATTTAAAAACAGAA+AGG + chr8_4:1565279-1565298 None:intergenic 20.0%
!! AAATTTACATGTGTTAAGAT+AGG - chr8_4:1565795-1565814 Msa1306610:CDS 20.0%
!!! GATTTTTGGTTTCTAAAATT+TGG + chr8_4:1566031-1566050 None:intergenic 20.0%
!!! AAAGTTATTGAAGAAGATTT+TGG - chr8_4:1566841-1566860 Msa1306610:intron 20.0%
!! AATATTACCTTACTATTTGA+AGG + chr8_4:1567034-1567053 None:intergenic 20.0%
!! ATTAAATACATTATTCATGC+AGG - chr8_4:1567227-1567246 Msa1306610:intron 20.0%
!! TAAAAAATCACATCATGATA+TGG - chr8_4:1567359-1567378 Msa1306610:CDS 20.0%
!! TCATCTAATCATTAAATCTA+AGG - chr8_4:1567674-1567693 Msa1306610:intron 20.0%
!!! AATTTGGTATCTAAAATTGT+AGG - chr8_4:1567727-1567746 Msa1306610:intron 20.0%
!! AAACTTAGAGAATAATGTAA+GGG + chr8_4:1567838-1567857 None:intergenic 20.0%
!! ATATTGTTAATGTTATGTAG+GGG - chr8_4:1567967-1567986 Msa1306610:intron 20.0%
!! ATACTTATAAATGTCTATGA+GGG + chr8_4:1568420-1568439 None:intergenic 20.0%
!! AATACTTATAAATGTCTATG+AGG + chr8_4:1568421-1568440 None:intergenic 20.0%
!! TTAACCCTTAAAAAAATACA+TGG + chr8_4:1568525-1568544 None:intergenic 20.0%
! TATATATATATATGCAGCAG+AGG + chr8_4:1563935-1563954 None:intergenic 25.0%
! TTTGGAAACAATAACTGATA+TGG + chr8_4:1564055-1564074 None:intergenic 25.0%
!!! TGTTTTTCAGTTACTAGATT+TGG + chr8_4:1564073-1564092 None:intergenic 25.0%
!! AAAAACAATCACTTCTGTTT+TGG - chr8_4:1564086-1564105 Msa1306610:intron 25.0%
! TAGCATAAACACATTTAATG+AGG + chr8_4:1564362-1564381 None:intergenic 25.0%
! AAACATGAACATATTCAAGA+AGG + chr8_4:1564404-1564423 None:intergenic 25.0%
! CATATAAAGTCTTAGTTTCA+AGG + chr8_4:1564435-1564454 None:intergenic 25.0%
!! CATCTAAGATAACAAATAAG+TGG + chr8_4:1564566-1564585 None:intergenic 25.0%
! ATGCTTAAGTCAATAATTGA+GGG + chr8_4:1564731-1564750 None:intergenic 25.0%
! TATGCTTAAGTCAATAATTG+AGG + chr8_4:1564732-1564751 None:intergenic 25.0%
! AGATTATCTTAGAGAGTTTA+TGG - chr8_4:1564756-1564775 Msa1306610:intron 25.0%
!! TATAAAGGCGTGTATAAAAA+GGG + chr8_4:1565509-1565528 None:intergenic 25.0%
!! TTATAAAGGCGTGTATAAAA+AGG + chr8_4:1565510-1565529 None:intergenic 25.0%
! GGTGTACTTATAAAAAGAAA+GGG - chr8_4:1565541-1565560 Msa1306610:CDS 25.0%
! TAACATTTATCTTCTTCCTT+TGG - chr8_4:1565611-1565630 Msa1306610:CDS 25.0%
! TGGAGTTCATTTATAATACA+AGG + chr8_4:1565730-1565749 None:intergenic 25.0%
! TATCCATCCTTATTACTATT+TGG - chr8_4:1565870-1565889 Msa1306610:CDS 25.0%
! ATCCATCCTTATTACTATTT+GGG - chr8_4:1565871-1565890 Msa1306610:CDS 25.0%
!!! AGATTATTAGTCTTTAGGTT+TGG + chr8_4:1565993-1566012 None:intergenic 25.0%
!!! GTCTTAGATTATTAGTCTTT+AGG + chr8_4:1565998-1566017 None:intergenic 25.0%
!! AAATTACACAATGCATTGAT+AGG + chr8_4:1566053-1566072 None:intergenic 25.0%
! ACATTATTACAAGAAGTTGA+GGG + chr8_4:1566218-1566237 None:intergenic 25.0%
! AACATTATTACAAGAAGTTG+AGG + chr8_4:1566219-1566238 None:intergenic 25.0%
!!! GTTTTTAACTCTTAGATCAA+TGG - chr8_4:1567006-1567025 Msa1306610:intron 25.0%
! AATGATCAAGCTAAGAAATA+TGG + chr8_4:1567070-1567089 None:intergenic 25.0%
! CATAATATTGTATCAAACAC+AGG - chr8_4:1567156-1567175 Msa1306610:CDS 25.0%
! AGGAAGGATATTAGAAATTA+TGG - chr8_4:1567584-1567603 Msa1306610:intron 25.0%
! GAAACTTAGAGAATAATGTA+AGG + chr8_4:1567839-1567858 None:intergenic 25.0%
! TTGCAAAATGTTAATCAGAT+TGG + chr8_4:1567929-1567948 None:intergenic 25.0%
! TAGTCACAAATGAAAATTCT+TGG - chr8_4:1568204-1568223 Msa1306610:intron 25.0%
!! TAATAGAAAAAGTTAGTCTC+TGG - chr8_4:1568252-1568271 Msa1306610:CDS 25.0%
! ATAGATTCATGTCAAATCAT+TGG + chr8_4:1568371-1568390 None:intergenic 25.0%
!!! TATATGGCATTTTTTTTCTC+TGG - chr8_4:1568462-1568481 Msa1306610:five_prime_UTR 25.0%
! GTGGAAATAGTATAGTATAT+GGG - chr8_4:1568484-1568503 Msa1306610:five_prime_UTR 25.0%
!!! CTCACCATGTATTTTTTTAA+GGG - chr8_4:1568518-1568537 Msa1306610:five_prime_UTR 25.0%
!!! TCGAAAGAATCTTTTTTACA+GGG + chr8_4:1568593-1568612 None:intergenic 25.0%
!!! ATCGAAAGAATCTTTTTTAC+AGG + chr8_4:1568594-1568613 None:intergenic 25.0%
ATTTCTGTCACAACTTTCTT+TGG - chr8_4:1563900-1563919 Msa1306610:CDS 30.0%
AATGCTATGTTCTGATAAGA+TGG + chr8_4:1563971-1563990 None:intergenic 30.0%
TCTGTTGCATAAGTAGATAA+TGG - chr8_4:1564213-1564232 Msa1306610:intron 30.0%
AATGGAGCTATGTAATATTC+TGG - chr8_4:1564284-1564303 Msa1306610:intron 30.0%
!! TGCCAAAATTTGATTTGAGA+TGG - chr8_4:1564472-1564491 Msa1306610:intron 30.0%
!! GCCAAAATTTGATTTGAGAT+GGG - chr8_4:1564473-1564492 Msa1306610:intron 30.0%
! ACCCATCTCAAATCAAATTT+TGG + chr8_4:1564477-1564496 None:intergenic 30.0%
TGAAAAATGGTCAAGGAAAA+AGG + chr8_4:1564955-1564974 None:intergenic 30.0%
!! TTTTTCCTTGACCATTTTTC+AGG - chr8_4:1564954-1564973 Msa1306610:CDS 30.0%
!! TTTTCCTTGACCATTTTTCA+GGG - chr8_4:1564955-1564974 Msa1306610:CDS 30.0%
ATGTCCTTTGTATTCAACAT+TGG - chr8_4:1565202-1565221 Msa1306610:CDS 30.0%
ACTAGAAAGGAACACAAAAA+AGG + chr8_4:1565253-1565272 None:intergenic 30.0%
ACTAAGAACACACAAATTTG+AGG + chr8_4:1565321-1565340 None:intergenic 30.0%
TATGTTTCTCTTTCTTTAGC+TGG - chr8_4:1565440-1565459 Msa1306610:intron 30.0%
GCCTTTATAAACTCACAAAA+GGG - chr8_4:1565520-1565539 Msa1306610:CDS 30.0%
! ACCCTTTTGTGAGTTTATAA+AGG + chr8_4:1565524-1565543 None:intergenic 30.0%
GGGTGTACTTATAAAAAGAA+AGG - chr8_4:1565540-1565559 Msa1306610:CDS 30.0%
TGTTTAAGGAACAAAACCAA+AGG + chr8_4:1565630-1565649 None:intergenic 30.0%
TTAGACTAAACACTAAAGAG+TGG + chr8_4:1565835-1565854 None:intergenic 30.0%
TTCCCAAATAGTAATAAGGA+TGG + chr8_4:1565876-1565895 None:intergenic 30.0%
!! CAATGCATTGATAGGATTTT+TGG + chr8_4:1566045-1566064 None:intergenic 30.0%
! TGTGTTTTCCTTTCATGAAA+GGG - chr8_4:1566103-1566122 Msa1306610:CDS 30.0%
ACTTCTTGTAATAATGTTGC+TGG - chr8_4:1566221-1566240 Msa1306610:CDS 30.0%
TTGAATTCGAGAAATAACGA+AGG - chr8_4:1566356-1566375 Msa1306610:intron 30.0%
GTTGAATTAATTCCAGAAGT+TGG - chr8_4:1566416-1566435 Msa1306610:CDS 30.0%
ATTATGTCATATCCAACTTC+TGG + chr8_4:1566431-1566450 None:intergenic 30.0%
! TGTTTCATTTGGTAGTTGAT+TGG + chr8_4:1566498-1566517 None:intergenic 30.0%
ACTACCAAATGAAACATTCA+TGG - chr8_4:1566502-1566521 Msa1306610:intron 30.0%
TCAACCATGAATGTTTCATT+TGG + chr8_4:1566509-1566528 None:intergenic 30.0%
TAACCAAAAAATGAGCTTAG+TGG - chr8_4:1566646-1566665 Msa1306610:intron 30.0%
! AAGAATCAAGCTTTTGTGTT+TGG - chr8_4:1566768-1566787 Msa1306610:intron 30.0%
! CTTCTTCAATAACTTTTGTG+AGG + chr8_4:1566837-1566856 None:intergenic 30.0%
AATGGTTCCTTCAAATAGTA+AGG - chr8_4:1567024-1567043 Msa1306610:intron 30.0%
! TCTTTTTCTCAAGCTTTCTA+AGG + chr8_4:1567290-1567309 None:intergenic 30.0%
TGAGAAAAAGATAAGAGAGT+TGG - chr8_4:1567299-1567318 Msa1306610:intron 30.0%
AAAATCACATCATGATATGG+TGG - chr8_4:1567362-1567381 Msa1306610:CDS 30.0%
!! ATTTTCCTCTTTTTCACCAT+AGG + chr8_4:1567438-1567457 None:intergenic 30.0%
! CTTCAAAAGGAAGTTCTAAT+AGG - chr8_4:1567499-1567518 Msa1306610:CDS 30.0%
TGAGATAATTGGTATTCTCA+TGG + chr8_4:1567902-1567921 None:intergenic 30.0%
! AGATTGGTTCTTGAGATAAT+TGG + chr8_4:1567913-1567932 None:intergenic 30.0%
!! TCCTTTTATTTGCAGTTCAA+AGG - chr8_4:1568040-1568059 Msa1306610:intron 30.0%
TCCTTTGAACTGCAAATAAA+AGG + chr8_4:1568044-1568063 None:intergenic 30.0%
! TTCAATTTAATTTCTCCCAC+TGG - chr8_4:1568160-1568179 Msa1306610:intron 30.0%
!! TCTCTGGAATAAATACCTAT+TGG - chr8_4:1568268-1568287 Msa1306610:CDS 30.0%
TTGTTTCAGCACTTGTAAAT+TGG - chr8_4:1568308-1568327 Msa1306610:exon 30.0%
AACTCAAGAAATGCAGTATA+TGG - chr8_4:1568446-1568465 Msa1306610:five_prime_UTR 30.0%
GGTGGAAATAGTATAGTATA+TGG - chr8_4:1568483-1568502 Msa1306610:five_prime_UTR 30.0%
!!! GCTCACCATGTATTTTTTTA+AGG - chr8_4:1568517-1568536 Msa1306610:five_prime_UTR 30.0%
!!! AAAGAATCTTTTTTACAGGG+GGG + chr8_4:1568590-1568609 None:intergenic 30.0%
!!! GAAAGAATCTTTTTTACAGG+GGG + chr8_4:1568591-1568610 None:intergenic 30.0%
!!! CGAAAGAATCTTTTTTACAG+GGG + chr8_4:1568592-1568611 None:intergenic 30.0%
CTATGTTCTGATAAGATGGT+TGG + chr8_4:1563967-1563986 None:intergenic 35.0%
!! ATTCAGATGTTGACTTGAGA+GGG + chr8_4:1564013-1564032 None:intergenic 35.0%
AAACAGTTTGTATCTTACCC+TGG + chr8_4:1564328-1564347 None:intergenic 35.0%
! CTGCATTAAAGGTTTTTGCT+AGG - chr8_4:1564652-1564671 Msa1306610:intron 35.0%
CGATAAGCTGTTTATCAACA+AGG - chr8_4:1564929-1564948 Msa1306610:CDS 35.0%
ACAATGGAGAGATTAAGACA+AGG - chr8_4:1565002-1565021 Msa1306610:CDS 35.0%
AAGACAAGGAAAACAAGTCA+AGG - chr8_4:1565016-1565035 Msa1306610:CDS 35.0%
!! GAACTTAGTTCTGACGAAAT+AGG - chr8_4:1565043-1565062 Msa1306610:CDS 35.0%
!! GTTGGTATCTACTGTTTTGA+GGG + chr8_4:1565107-1565126 None:intergenic 35.0%
ATACCAACCCTCAAACAAAA+AGG - chr8_4:1565119-1565138 Msa1306610:CDS 35.0%
TTGGCCAATGTTGAATACAA+AGG + chr8_4:1565209-1565228 None:intergenic 35.0%
TTTGTATTCAACATTGGCCA+AGG - chr8_4:1565208-1565227 Msa1306610:CDS 35.0%
TTGTATTCAACATTGGCCAA+GGG - chr8_4:1565209-1565228 Msa1306610:CDS 35.0%
AAAAGAGTGAGATTTACCCT+TGG + chr8_4:1565228-1565247 None:intergenic 35.0%
AACAGAAAGGCAAACTAGAA+AGG + chr8_4:1565266-1565285 None:intergenic 35.0%
TTGTGTGTTCTTAGTTTACC+AGG - chr8_4:1565326-1565345 Msa1306610:intron 35.0%
TAGAAAATGGCCAACCAATT+TGG - chr8_4:1565357-1565376 Msa1306610:intron 35.0%
CATCAATTAGCCAAATTGGT+TGG + chr8_4:1565370-1565389 None:intergenic 35.0%
TCAGCATCAATTAGCCAAAT+TGG + chr8_4:1565374-1565393 None:intergenic 35.0%
CGCCTTTATAAACTCACAAA+AGG - chr8_4:1565519-1565538 Msa1306610:CDS 35.0%
GACAGGTTCAAATGTGTTTA+AGG + chr8_4:1565644-1565663 None:intergenic 35.0%
TGTTAAGATAGGTCTTGCTT+TGG - chr8_4:1565806-1565825 Msa1306610:CDS 35.0%
CAGGTTCCCAAATAGTAATA+AGG + chr8_4:1565880-1565899 None:intergenic 35.0%
ATTACTATTTGGGAACCTGT+AGG - chr8_4:1565881-1565900 Msa1306610:CDS 35.0%
! GTGTGTTTTCCTTTCATGAA+AGG - chr8_4:1566102-1566121 Msa1306610:CDS 35.0%
! GTGTTTTCCTTTCATGAAAG+GGG - chr8_4:1566104-1566123 Msa1306610:CDS 35.0%
TCAATAACCCCTTTCATGAA+AGG + chr8_4:1566114-1566133 None:intergenic 35.0%
AATGCATTTGAGCTACCATT+AGG + chr8_4:1566470-1566489 None:intergenic 35.0%
AAACATTCATGGTTGAAAGC+TGG - chr8_4:1566513-1566532 Msa1306610:intron 35.0%
TATGCAGTCACTTGAATTCA+CGG + chr8_4:1566579-1566598 None:intergenic 35.0%
AAATATTTCTTCTGCTCCGA+AGG - chr8_4:1566604-1566623 Msa1306610:intron 35.0%
!!! GATCCACTAAGCTCATTTTT+TGG + chr8_4:1566652-1566671 None:intergenic 35.0%
TAATGCCAATCTTCACTTAG+AGG + chr8_4:1566674-1566693 None:intergenic 35.0%
AAGCAATGACCAGTTAACAA+CGG - chr8_4:1566721-1566740 Msa1306610:intron 35.0%
!! AGCTTTTGTGTTTGGAACAA+AGG - chr8_4:1566776-1566795 Msa1306610:intron 35.0%
! ACCATGTTTTGTCAGAAAGA+AGG - chr8_4:1566960-1566979 Msa1306610:intron 35.0%
TCCTTCTTTCTGACAAAACA+TGG + chr8_4:1566964-1566983 None:intergenic 35.0%
GAAGAGCAAAGCTAAATGAA+AGG - chr8_4:1566984-1567003 Msa1306610:intron 35.0%
TCTAGTGTTTGTGTTTGTGT+CGG + chr8_4:1567112-1567131 None:intergenic 35.0%
TAACAATGGGAAGAAACCTA+TGG - chr8_4:1567419-1567438 Msa1306610:CDS 35.0%
AGAAACCTATGGTGAAAAAG+AGG - chr8_4:1567430-1567449 Msa1306610:CDS 35.0%
GAGGAAAATTTGTGACATAG+AGG - chr8_4:1567449-1567468 Msa1306610:CDS 35.0%
GAAAATTTGTGACATAGAGG+AGG - chr8_4:1567452-1567471 Msa1306610:CDS 35.0%
ATGTGTTCAGATGCTTCAAA+AGG - chr8_4:1567486-1567505 Msa1306610:CDS 35.0%
AATGTCAGTATGAGTGACAA+TGG - chr8_4:1567528-1567547 Msa1306610:CDS 35.0%
!! ATATCCTTCCTGCTTTAGAA+GGG + chr8_4:1567575-1567594 None:intergenic 35.0%
! AATATCCTTCCTGCTTTAGA+AGG + chr8_4:1567576-1567595 None:intergenic 35.0%
AATCAACAGAAGAAGCTGAT+GGG - chr8_4:1567646-1567665 Msa1306610:intron 35.0%
GGACTATAAGGACATTAAGT+TGG + chr8_4:1567881-1567900 None:intergenic 35.0%
! TGGTATTCTCATGGACTATA+AGG + chr8_4:1567893-1567912 None:intergenic 35.0%
TGTAGGGGACTAATTTGATA+AGG - chr8_4:1567982-1568001 Msa1306610:intron 35.0%
GTAGGGGACTAATTTGATAA+GGG - chr8_4:1567983-1568002 Msa1306610:intron 35.0%
!!! CTTTTTGTTGTTGCATTAGC+TGG + chr8_4:1568067-1568086 None:intergenic 35.0%
CAGCTAATGCAACAACAAAA+AGG - chr8_4:1568065-1568084 Msa1306610:intron 35.0%
!! AAAACTTTGAAGCCACTTTC+TGG + chr8_4:1568105-1568124 None:intergenic 35.0%
!! TACCTATTGGTGATGTAACA+TGG - chr8_4:1568281-1568300 Msa1306610:CDS 35.0%
GCACTTGTAAATTGGTAGAT+AGG - chr8_4:1568316-1568335 Msa1306610:five_prime_UTR 35.0%
!!! ATGGCATTTTTTTTCTCTGG+TGG - chr8_4:1568465-1568484 Msa1306610:five_prime_UTR 35.0%
GAATCTTCATATTTCAGGGT+TGG + chr8_4:1568618-1568637 None:intergenic 35.0%
GACGGAATCTTCATATTTCA+GGG + chr8_4:1568622-1568641 None:intergenic 35.0%
!! GATTCAGATGTTGACTTGAG+AGG + chr8_4:1564014-1564033 None:intergenic 40.0%
CTGATATGGCTACAAAAGTG+TGG + chr8_4:1564041-1564060 None:intergenic 40.0%
!! AATGGTGCCACAAAACATGA+AGG - chr8_4:1564231-1564250 Msa1306610:intron 40.0%
! AGTTGCTCCTTCATGTTTTG+TGG + chr8_4:1564241-1564260 None:intergenic 40.0%
!! TGGCAGTTAGAAGCATTCAA+TGG - chr8_4:1564266-1564285 Msa1306610:intron 40.0%
TCTGAATCTGTTAACCAACC+AGG - chr8_4:1564307-1564326 Msa1306610:intron 40.0%
CTGAATCTGTTAACCAACCA+GGG - chr8_4:1564308-1564327 Msa1306610:intron 40.0%
AGTTTGTATCTTACCCTGGT+TGG + chr8_4:1564324-1564343 None:intergenic 40.0%
! GCTACTACTTGCTGCATTAA+AGG - chr8_4:1564641-1564660 Msa1306610:intron 40.0%
AACACCCTGAAAAATGGTCA+AGG + chr8_4:1564962-1564981 None:intergenic 40.0%
!!! ATTTTTCAGGGTGTTGAGCT+GGG - chr8_4:1564967-1564986 Msa1306610:CDS 40.0%
AAGGAAAACAAGTCAAGGAG+TGG - chr8_4:1565021-1565040 Msa1306610:CDS 40.0%
!! GGTTGGTATCTACTGTTTTG+AGG + chr8_4:1565108-1565127 None:intergenic 40.0%
!! CAGAAGGCCTTTTTGTTTGA+GGG + chr8_4:1565129-1565148 None:intergenic 40.0%
AGATACCGAGTGGTACTATT+TGG - chr8_4:1565174-1565193 Msa1306610:CDS 40.0%
GCAAACCAAATAGTACCACT+CGG + chr8_4:1565182-1565201 None:intergenic 40.0%
GAGAAACATATACCTTTGCG+AGG + chr8_4:1565430-1565449 None:intergenic 40.0%
AAGGCGTGTATAAAAAGGGA+CGG + chr8_4:1565505-1565524 None:intergenic 40.0%
AATTGATGCACTCTGAGCAT+GGG + chr8_4:1565671-1565690 None:intergenic 40.0%
TCAATGTAATTGCACGTCTC+TGG + chr8_4:1565912-1565931 None:intergenic 40.0%
ATGAAAGGGGTTATTGAGCT+AGG - chr8_4:1566117-1566136 Msa1306610:CDS 40.0%
! ACCGATCACGTAAGTCTTTT+CGG - chr8_4:1566144-1566163 Msa1306610:CDS 40.0%
ACCGAAAAGACTTACGTGAT+CGG + chr8_4:1566148-1566167 None:intergenic 40.0%
TTCCAATACCTTCACACCAA+AGG + chr8_4:1566255-1566274 None:intergenic 40.0%
ATGTAGCTCGAGCGTTAATA+GGG + chr8_4:1566337-1566356 None:intergenic 40.0%
AATGTAGCTCGAGCGTTAAT+AGG + chr8_4:1566338-1566357 None:intergenic 40.0%
ATTTGAGCTACCATTAGGAG+AGG + chr8_4:1566465-1566484 None:intergenic 40.0%
TTGCAATCTTCTCCAACCTT+CGG + chr8_4:1566623-1566642 None:intergenic 40.0%
TGGATCCTCTAAGTGAAGAT+TGG - chr8_4:1566666-1566685 Msa1306610:intron 40.0%
AGCAATGACCAGTTAACAAC+GGG - chr8_4:1566722-1566741 Msa1306610:intron 40.0%
AATTTCCAAAGGCCAAGACA+AGG - chr8_4:1566809-1566828 Msa1306610:intron 40.0%
ATTTCCAAAGGCCAAGACAA+GGG - chr8_4:1566810-1566829 Msa1306610:intron 40.0%
!! AGATTTTGGTCGAAGTTCCA+CGG - chr8_4:1566855-1566874 Msa1306610:intron 40.0%
!! TGGTTTGCTTGAATCTCAAG+AGG - chr8_4:1566889-1566908 Msa1306610:intron 40.0%
GAGGAGAATGACTATAGAGA+AGG - chr8_4:1566908-1566927 Msa1306610:intron 40.0%
! TAGAGAAGGTACAAGACTAG+AGG - chr8_4:1566922-1566941 Msa1306610:intron 40.0%
! GCACTGATACTTCAGATTGA+AGG + chr8_4:1567187-1567206 None:intergenic 40.0%
CTTCTAGACTCTATACCTGT+TGG + chr8_4:1567339-1567358 None:intergenic 40.0%
CAATCAACAGAAGAAGCTGA+TGG - chr8_4:1567645-1567664 Msa1306610:intron 40.0%
GTCCATGTTACATCACCAAT+AGG + chr8_4:1568286-1568305 None:intergenic 40.0%
! TTTTACCCCCCCTGTAATAT+AGG - chr8_4:1568550-1568569 Msa1306610:five_prime_UTR 40.0%
!!! TTTTTTACAGGGGGGAAAAC+CGG + chr8_4:1568582-1568601 None:intergenic 40.0%
CGACGGAATCTTCATATTTC+AGG + chr8_4:1568623-1568642 None:intergenic 40.0%
! CATGAAGGAGCAACTTGCTT+TGG - chr8_4:1564246-1564265 Msa1306610:intron 45.0%
CAGCTCAACACCCTGAAAAA+TGG + chr8_4:1564968-1564987 None:intergenic 45.0%
!!! CATTTTTCAGGGTGTTGAGC+TGG - chr8_4:1564966-1564985 Msa1306610:CDS 45.0%
!!! TTTTTCAGGGTGTTGAGCTG+GGG - chr8_4:1564968-1564987 Msa1306610:CDS 45.0%
CTGACGAAATAGGCTTACAG+AGG - chr8_4:1565053-1565072 Msa1306610:CDS 45.0%
!! AGGCCTTTTTGTTTGAGGGT+TGG + chr8_4:1565125-1565144 None:intergenic 45.0%
!! GCAGAAGGCCTTTTTGTTTG+AGG + chr8_4:1565130-1565149 None:intergenic 45.0%
TCGGTATCTGTGAGATCATC+AGG + chr8_4:1565163-1565182 None:intergenic 45.0%
ATGATCTCACAGATACCGAG+TGG - chr8_4:1565164-1565183 Msa1306610:CDS 45.0%
!!! CCATTTTCTAGAGCTCTTCC+TGG + chr8_4:1565347-1565366 None:intergenic 45.0%
!! CCAGGAAGAGCTCTAGAAAA+TGG - chr8_4:1565344-1565363 Msa1306610:intron 45.0%
! AGCTGGCTTCTTCTTTCTTC+TGG - chr8_4:1565457-1565476 Msa1306610:intron 45.0%
GAATTGATGCACTCTGAGCA+TGG + chr8_4:1565672-1565691 None:intergenic 45.0%
TGCTCAGAGTGCATCAATTC+AGG - chr8_4:1565672-1565691 Msa1306610:CDS 45.0%
ACGTCTCTGGTATTACCTAC+AGG + chr8_4:1565899-1565918 None:intergenic 45.0%
TCGTCTCAACTTTCAGACAG+TGG - chr8_4:1566080-1566099 Msa1306610:CDS 45.0%
! ATTCTTCGCCTTTGGTGTGA+AGG - chr8_4:1566244-1566263 Msa1306610:CDS 45.0%
AACACAGCAACCTCTCCTAA+TGG - chr8_4:1566452-1566471 Msa1306610:intron 45.0%
! GGTTGAAAGCTGGCAAGTTT+TGG - chr8_4:1566523-1566542 Msa1306610:intron 45.0%
ATTTCTTCTGCTCCGAAGGT+TGG - chr8_4:1566608-1566627 Msa1306610:intron 45.0%
GCAATGACCAGTTAACAACG+GGG - chr8_4:1566723-1566742 Msa1306610:intron 45.0%
AATGCATCCCCGTTGTTAAC+TGG + chr8_4:1566733-1566752 None:intergenic 45.0%
GTGTGCCTGTGAATTTCCAA+AGG - chr8_4:1566798-1566817 Msa1306610:intron 45.0%
! CTTGGCCTTTGGAAATTCAC+AGG + chr8_4:1566806-1566825 None:intergenic 45.0%
! TTTTGTGAGGTCCCTTGTCT+TGG + chr8_4:1566824-1566843 None:intergenic 45.0%
ACAAGACTAGAGGCTGATGA+AGG - chr8_4:1566932-1566951 Msa1306610:intron 45.0%
! TGTTTGTGTCGGTGCTTCAT+AGG + chr8_4:1567101-1567120 None:intergenic 45.0%
GAAGCTAAAAGAGAGCCAAC+AGG - chr8_4:1567321-1567340 Msa1306610:CDS 45.0%
! CACATCATGATATGGTGGAG+AGG - chr8_4:1567367-1567386 Msa1306610:CDS 45.0%
TTTGTGACATAGAGGAGGCA+AGG - chr8_4:1567457-1567476 Msa1306610:CDS 45.0%
!! ATGAAGTGCCCTTCTAAAGC+AGG - chr8_4:1567564-1567583 Msa1306610:intron 45.0%
!! CTTTGAAGCCACTTTCTGGA+GGG + chr8_4:1568101-1568120 None:intergenic 45.0%
!! ACTTTGAAGCCACTTTCTGG+AGG + chr8_4:1568102-1568121 None:intergenic 45.0%
AACTCGCCTATATTACAGGG+GGG + chr8_4:1568559-1568578 None:intergenic 45.0%
GAACTCGCCTATATTACAGG+GGG + chr8_4:1568560-1568579 None:intergenic 45.0%
GGAACTCGCCTATATTACAG+GGG + chr8_4:1568561-1568580 None:intergenic 45.0%
CGGAACTCGCCTATATTACA+GGG + chr8_4:1568562-1568581 None:intergenic 45.0%
CCTGTAATATAGGCGAGTTC+CGG - chr8_4:1568560-1568579 Msa1306610:five_prime_UTR 45.0%
AAAACACCCCTGGTCAAATC+TGG - chr8_4:1568643-1568662 Msa1306610:five_prime_UTR 45.0%
CGTCATCAAAAAAGGTGACG+TGG + chr8_4:1568695-1568714 None:intergenic 45.0%
!!! CGTCACCTTTTTTGATGACG+TGG - chr8_4:1568695-1568714 Msa1306610:five_prime_UTR 45.0%
!! GTATTTAAAAATAAAAAAAA+TGG - chr8_4:1568132-1568151 Msa1306610:intron 5.0%
!! CAGATGTTGACTTGAGAGGG+AGG + chr8_4:1564010-1564029 None:intergenic 50.0%
!!! TTTTCAGGGTGTTGAGCTGG+GGG - chr8_4:1564969-1564988 Msa1306610:CDS 50.0%
TGGGGGGAAGGATACTACAA+TGG - chr8_4:1564986-1565005 Msa1306610:CDS 50.0%
! AGCAGCTGAGAGAGCTTTTC+AGG - chr8_4:1565080-1565099 Msa1306610:CDS 50.0%
!! TCAGGTGAAAGTGCTGCAGA+AGG + chr8_4:1565145-1565164 None:intergenic 50.0%
GTTGCTGGATTCTTCGCCTT+TGG - chr8_4:1566236-1566255 Msa1306610:CDS 50.0%
! CGCCTTTGGTGTGAAGGTAT+TGG - chr8_4:1566250-1566269 Msa1306610:CDS 50.0%
AAACCATCAGTGTGCATCCG+TGG + chr8_4:1566875-1566894 None:intergenic 50.0%
! TTGTGTCGGTGCTTCATAGG+TGG + chr8_4:1567098-1567117 None:intergenic 50.0%
!! AGTGCCCTTCTAAAGCAGGA+AGG - chr8_4:1567568-1567587 Msa1306610:intron 50.0%
ACTCGCCTATATTACAGGGG+GGG + chr8_4:1568558-1568577 None:intergenic 50.0%
CCGGAACTCGCCTATATTAC+AGG + chr8_4:1568563-1568582 None:intergenic 50.0%
!!! TTGACCAGGGGTGTTTTCGA+CGG + chr8_4:1568640-1568659 None:intergenic 50.0%
GCGTGCCACGTCATCAAAAA+AGG + chr8_4:1568703-1568722 None:intergenic 50.0%
!! TTTCAGGGTGTTGAGCTGGG+GGG - chr8_4:1564970-1564989 Msa1306610:CDS 55.0%
CTCTGAGCATGGGAGAAGAC+AGG + chr8_4:1565661-1565680 None:intergenic 55.0%
! AGGTCCCTTGTCTTGGCCTT+TGG + chr8_4:1566817-1566836 None:intergenic 55.0%
GTTCCACGGATGCACACTGA+TGG - chr8_4:1566869-1566888 Msa1306610:intron 55.0%
CAAGCAAGCCCTCCAGAAAG+TGG - chr8_4:1568090-1568109 Msa1306610:intron 55.0%
TCTCTGTGTGACACGCCAGT+GGG + chr8_4:1568178-1568197 None:intergenic 55.0%
ATCTCTGTGTGACACGCCAG+TGG + chr8_4:1568179-1568198 None:intergenic 55.0%
GATTCCGTCGAAAACACCCC+TGG - chr8_4:1568633-1568652 Msa1306610:five_prime_UTR 55.0%
CGTGTGCCAGATTTGACCAG+GGG + chr8_4:1568652-1568671 None:intergenic 55.0%
GCGTGTGCCAGATTTGACCA+GGG + chr8_4:1568653-1568672 None:intergenic 55.0%
TAGTCGCGCTCTCCTCGCAA+AGG - chr8_4:1565415-1565434 Msa1306610:intron 60.0%
GGCGTGTGCCAGATTTGACC+AGG + chr8_4:1568654-1568673 None:intergenic 60.0%
GGTCAAATCTGGCACACGCC+AGG - chr8_4:1568654-1568673 Msa1306610:five_prime_UTR 60.0%
!! AGGGTGTTGAGCTGGGGGGA+AGG - chr8_4:1564974-1564993 Msa1306610:CDS 65.0%
!! GCACACGCCAGGTGCTGATG+TGG - chr8_4:1568665-1568684 Msa1306610:five_prime_UTR 65.0%
TGGCGCGCCACATCAGCACC+TGG + chr8_4:1568675-1568694 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 1563819 1568725 1563819 ID=Msa1306610;Name=Msa1306610
chr8_4 mRNA 1563819 1568725 1563819 ID=Msa1306610-mRNA-1;Parent=Msa1306610;Name=Msa1306610-mRNA-1;_AED=0.15;_eAED=0.15;_QI=413|0.71|0.75|0.87|1|1|8|0|650
chr8_4 exon 1563819 1563972 1563819 ID=Msa1306610-mRNA-1:exon:437;Parent=Msa1306610-mRNA-1
chr8_4 exon 1564425 1564489 1564425 ID=Msa1306610-mRNA-1:exon:436;Parent=Msa1306610-mRNA-1
chr8_4 exon 1564849 1565295 1564849 ID=Msa1306610-mRNA-1:exon:435;Parent=Msa1306610-mRNA-1
chr8_4 exon 1565499 1566278 1565499 ID=Msa1306610-mRNA-1:exon:434;Parent=Msa1306610-mRNA-1
chr8_4 exon 1566392 1566448 1566392 ID=Msa1306610-mRNA-1:exon:433;Parent=Msa1306610-mRNA-1
chr8_4 exon 1567108 1567204 1567108 ID=Msa1306610-mRNA-1:exon:432;Parent=Msa1306610-mRNA-1
chr8_4 exon 1567314 1567568 1567314 ID=Msa1306610-mRNA-1:exon:431;Parent=Msa1306610-mRNA-1
chr8_4 exon 1568215 1568725 1568215 ID=Msa1306610-mRNA-1:exon:430;Parent=Msa1306610-mRNA-1
chr8_4 five_prime_UTR 1568313 1568725 1568313 ID=Msa1306610-mRNA-1:five_prime_utr;Parent=Msa1306610-mRNA-1
chr8_4 CDS 1568215 1568312 1568215 ID=Msa1306610-mRNA-1:cds;Parent=Msa1306610-mRNA-1
chr8_4 CDS 1567314 1567568 1567314 ID=Msa1306610-mRNA-1:cds;Parent=Msa1306610-mRNA-1
chr8_4 CDS 1567108 1567204 1567108 ID=Msa1306610-mRNA-1:cds;Parent=Msa1306610-mRNA-1
chr8_4 CDS 1566392 1566448 1566392 ID=Msa1306610-mRNA-1:cds;Parent=Msa1306610-mRNA-1
chr8_4 CDS 1565499 1566278 1565499 ID=Msa1306610-mRNA-1:cds;Parent=Msa1306610-mRNA-1
chr8_4 CDS 1564849 1565295 1564849 ID=Msa1306610-mRNA-1:cds;Parent=Msa1306610-mRNA-1
chr8_4 CDS 1564425 1564489 1564425 ID=Msa1306610-mRNA-1:cds;Parent=Msa1306610-mRNA-1
chr8_4 CDS 1563819 1563972 1563819 ID=Msa1306610-mRNA-1:cds;Parent=Msa1306610-mRNA-1
Gene Sequence

>Msa1306610

ATGGTGCCACAAAACATGAAGGAGCAACTTGCTTTGGCAGTTAGAAGCATTCAATGGAGCTATGTAATATTCTGGTCTGAATCTGTTAACCAACCAGGGGTGTTGAGCTGGGGGGAAGGATACTACAATGGAGAGATTAAGACAAGGAAAACAAGTCAAGGAGTGGAACTTAGTTCTGACGAAATAGGCTTACAGAGGAGTGAGCAGCTGAGAGAGCTTTTCAGGTCCCTCAAAACAGTAGATACCAACCCTCAAACAAAAAGGCCTTCTGCAGCACTTTCACCTGATGATCTCACAGATACCGAGTGGTACTATTTGGTTTGCATGTCCTTTGTATTCAACATTGGCCAAGGTTTACCAGGAAGAGCTCTAGAAAATGGCCAACCAATTTGGCTAATTGATGCTGATTCTGTTGATTGCAAAGTGTTTAGTCGCGCTCTCCTCGCAAAGACAGTGGTGTGTTTTCCTTTCATGAAAGGGGTTATTGAGCTAGGCACAACCGATCACGTATTGGAAGATCTCAGTCTCATTCAACAGATCAAAACTTCTTTATCGAATAGTCTAAGCGTCGATGACCCTATTAACGCTCGAGCTACATTGAATTCGAGAAATAACGAAGGTGTTGCTTGTGTAGCATTTGATGATAATGATTATGATGTTGAATTAATTCCAGAAGTTGGATATGACATAATCAACACAGCAACCTCTCCTAATGGTAGCTCAAATGCATTACAAGCCAATCAACTACCAAATGAAACATTCATGGTTGAAAGCTGGCAAGTTTTGGATGATGATTTGAGCAACTGTGTTCATAACTCCGTGAATTCAAGTGACTGCATATCACAAAATATTTCTTCTGCTCCGAAGGTTGGAGAAGATTGCAATAATAACCAAAAAATGAGCTTAGTGGATCCTCTAAGTGAAGATTGGCATTATCAGAAAATTCTTTCAGAACTTTTAAAAAGCAATGACCAGTTAACAACGGGGATGCATTTTCAAAACTTTCATCAAGAATCAAGCTTTTGTGTTTGGAACAAAGGTGTGCCTGTGAATTTCCAAAGGCCAAGACAAGGGACCTCACAAAAGTTATTGAAGAAGATTTTGGTCGAAGTTCCACGGATGCACACTGATGGTTTGCTTGAATCTCAAGAGGAGAATGACTATAGAGAAGGTACAAGACTAGAGGCTGATGAAGGTATGAACCATGTTTTGTCAGAAAGAAGGAGAAGAGCAAAGCTAAATGAAAGGTTTTTAACTCTTAGATCAATGGTTCCTTCAAATAGTAAGGATGACAAAGTTTCTATACTAGATGATGCAATTGAATACCTTAGAAAGCTTGAGAAAAAGATAAGAGAGTTGGAAGCTAAAAGAGAGCCAACAGGTATAGAGTCTAGAAGTAAAAAATCACATCATGATATGGTGGAGAGGACTTCTGATCAATACTATAATAACAAAACTAACAATGGGAAGAAACCTATGGTGAAAAAGAGGAAAATTTGTGACATAGAGGAGGCAAGGAGAGAGATGTGTTCAGATGCTTCAAAAGGAAGTTCTAATAGGAATGTTAATGTCAGTATGAGTGACAATGGAGTTGTAATTGAAATGAAGTGCCCTTCTAAAGCAGGAAGGATATTAGAAATTATGGAAGCAGTTAACAATCTCAACATAGATTTTAATTCAGTTCAATCAACAGAAGAAGCTGATGGGAGTCTTCATCTAATCATTAAATCTAAGTTCAAAGGACCAGCTAATGCAACAACAAAAAGGATCAAGCAAGCCCTCCAGAAAGTGGCTTCAAAGCGAGTTCCGGTTTTCCCCCCTGTAAAAAAGATTCTTTCGATTCCAACCCTGAAATATGAAGATTCCGTCGAAAACACCCCTGGTCAAATCTGGCACACGCCAGGTGCTGATGTGGCGCGCCACGTCACCTTTTTTGATGACGTGGCACGCTGA
Protein sequence

>Msa1306610

MVPQNMKEQLALAVRSIQWSYVIFWSESVNQPGVLSWGEGYYNGEIKTRKTSQGVELSSDEIGLQRSEQLRELFRSLKTVDTNPQTKRPSAALSPDDLTDTEWYYLVCMSFVFNIGQGLPGRALENGQPIWLIDADSVDCKVFSRALLAKTVVCFPFMKGVIELGTTDHVLEDLSLIQQIKTSLSNSLSVDDPINARATLNSRNNEGVACVAFDDNDYDVELIPEVGYDIINTATSPNGSSNALQANQLPNETFMVESWQVLDDDLSNCVHNSVNSSDCISQNISSAPKVGEDCNNNQKMSLVDPLSEDWHYQKILSELLKSNDQLTTGMHFQNFHQESSFCVWNKGVPVNFQRPRQGTSQKLLKKILVEVPRMHTDGLLESQEENDYREGTRLEADEGMNHVLSERRRRAKLNERFLTLRSMVPSNSKDDKVSILDDAIEYLRKLEKKIRELEAKREPTGIESRSKKSHHDMVERTSDQYYNNKTNNGKKPMVKKRKICDIEEARREMCSDASKGSSNRNVNVSMSDNGVVIEMKCPSKAGRILEIMEAVNNLNIDFNSVQSTEEADGSLHLIIKSKFKGPANATTKRIKQALQKVASKRVPVFPPVKKILSIPTLKYEDSVENTPGQIWHTPGADVARHVTFFDDVAR*