Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660430 | XP_013447087.1 | 97.403 | 231 | 0 | 2 | 3 | 233 | 396 | 620 | 1.06e-157 | 461 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660430 | sp|Q38897|BEL1_ARATH | 47.257 | 237 | 76 | 13 | 3 | 233 | 418 | 611 | 7.52e-46 | 164 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660430 | A0A072TUA6 | 97.403 | 231 | 0 | 2 | 3 | 233 | 396 | 620 | 5.07e-158 | 461 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0660430 | Msa1363270 | 0.832965 | 6.996481e-56 | -8.615850e-47 |
| Msa0660430 | Msa1363280 | 0.813006 | 3.184353e-51 | -8.615850e-47 |
| Msa0526490 | Msa0660430 | 0.823767 | 1.160257e-53 | -8.615850e-47 |
| Msa0526500 | Msa0660430 | 0.805374 | 1.377023e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660430 | MtrunA17_Chr8g0387321 | 97.403 | 231 | 0 | 2 | 3 | 233 | 396 | 620 | 9.76e-162 | 461 |
| Msa0660430 | MtrunA17_Chr4g0025521 | 71.429 | 63 | 14 | 1 | 3 | 65 | 429 | 487 | 5.02e-22 | 94.4 |
| Msa0660430 | MtrunA17_Chr7g0267481 | 60.000 | 70 | 24 | 1 | 3 | 72 | 385 | 450 | 3.84e-21 | 91.7 |
| Msa0660430 | MtrunA17_Chr8g0373801 | 75.472 | 53 | 9 | 1 | 3 | 55 | 603 | 651 | 8.40e-20 | 87.8 |
| Msa0660430 | MtrunA17_Chr5g0403251 | 34.518 | 197 | 104 | 7 | 3 | 180 | 551 | 741 | 1.20e-19 | 87.4 |
| Msa0660430 | MtrunA17_Chr7g0240371 | 32.468 | 231 | 105 | 9 | 3 | 231 | 332 | 513 | 4.62e-19 | 85.5 |
| Msa0660430 | MtrunA17_Chr4g0028701 | 70.000 | 50 | 11 | 1 | 3 | 52 | 497 | 542 | 1.41e-16 | 78.2 |
| Msa0660430 | MtrunA17_Chr4g0008591 | 62.500 | 56 | 17 | 1 | 3 | 58 | 387 | 438 | 1.86e-16 | 77.8 |
| Msa0660430 | MtrunA17_Chr1g0155681 | 72.917 | 48 | 9 | 1 | 3 | 50 | 383 | 426 | 2.22e-16 | 77.8 |
| Msa0660430 | MtrunA17_Chr2g0327021 | 68.000 | 50 | 12 | 1 | 3 | 52 | 466 | 511 | 3.05e-16 | 77.4 |
| Msa0660430 | MtrunA17_Chr3g0141941 | 60.656 | 61 | 20 | 1 | 3 | 63 | 372 | 428 | 4.13e-16 | 77.0 |
| Msa0660430 | MtrunA17_Chr1g0151681 | 48.649 | 74 | 30 | 2 | 3 | 76 | 451 | 516 | 9.05e-16 | 75.9 |
| Msa0660430 | MtrunA17_Chr3g0141931 | 70.833 | 48 | 10 | 1 | 3 | 50 | 375 | 418 | 1.96e-15 | 74.7 |
| Msa0660430 | MtrunA17_Chr1g0177751 | 64.286 | 70 | 20 | 2 | 3 | 72 | 373 | 437 | 2.94e-14 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660430 | AT5G41410.1 | 47.257 | 237 | 76 | 13 | 3 | 233 | 418 | 611 | 7.64e-47 | 164 |
| Msa0660430 | AT2G23760.4 | 80.851 | 47 | 5 | 1 | 1 | 47 | 501 | 543 | 4.78e-19 | 85.9 |
| Msa0660430 | AT4G36870.2 | 84.444 | 45 | 3 | 1 | 3 | 47 | 525 | 565 | 1.30e-18 | 84.7 |
| Msa0660430 | AT4G36870.1 | 84.444 | 45 | 3 | 1 | 3 | 47 | 525 | 565 | 1.30e-18 | 84.7 |
| Msa0660430 | AT2G23760.2 | 84.444 | 45 | 3 | 1 | 3 | 47 | 451 | 491 | 1.76e-18 | 84.3 |
| Msa0660430 | AT2G23760.1 | 84.444 | 45 | 3 | 1 | 3 | 47 | 451 | 491 | 1.76e-18 | 84.3 |
| Msa0660430 | AT2G23760.3 | 84.444 | 45 | 3 | 1 | 3 | 47 | 451 | 491 | 1.76e-18 | 84.3 |
| Msa0660430 | AT4G34610.2 | 52.809 | 89 | 31 | 3 | 3 | 85 | 341 | 424 | 1.66e-17 | 81.3 |
| Msa0660430 | AT4G34610.4 | 52.809 | 89 | 31 | 3 | 3 | 85 | 341 | 424 | 1.66e-17 | 81.3 |
| Msa0660430 | AT4G34610.3 | 52.809 | 89 | 31 | 3 | 3 | 85 | 341 | 424 | 1.66e-17 | 81.3 |
| Msa0660430 | AT4G34610.1 | 52.809 | 89 | 31 | 3 | 3 | 85 | 341 | 424 | 1.66e-17 | 81.3 |
| Msa0660430 | AT2G16400.1 | 79.167 | 48 | 6 | 1 | 3 | 50 | 312 | 355 | 2.53e-17 | 80.9 |
| Msa0660430 | AT2G27220.1 | 38.281 | 128 | 64 | 4 | 3 | 121 | 255 | 376 | 2.19e-16 | 77.8 |
| Msa0660430 | AT2G27220.3 | 38.281 | 128 | 64 | 4 | 3 | 121 | 255 | 376 | 2.19e-16 | 77.8 |
| Msa0660430 | AT2G27220.2 | 37.984 | 129 | 63 | 4 | 3 | 121 | 273 | 394 | 2.55e-16 | 77.8 |
| Msa0660430 | AT4G32980.1 | 58.065 | 62 | 22 | 1 | 3 | 64 | 399 | 456 | 2.88e-16 | 77.8 |
| Msa0660430 | AT4G32980.2 | 58.065 | 62 | 22 | 1 | 3 | 64 | 399 | 456 | 2.88e-16 | 77.8 |
| Msa0660430 | AT1G75430.1 | 68.750 | 48 | 11 | 1 | 3 | 50 | 229 | 272 | 3.09e-15 | 73.6 |
| Msa0660430 | AT2G27990.1 | 70.000 | 50 | 11 | 1 | 3 | 52 | 451 | 496 | 5.30e-15 | 73.9 |
| Msa0660430 | AT5G02030.1 | 68.750 | 48 | 11 | 1 | 3 | 50 | 375 | 418 | 6.67e-15 | 73.9 |
| Msa0660430 | AT1G19700.1 | 66.667 | 48 | 12 | 1 | 3 | 50 | 378 | 421 | 1.10e-14 | 73.2 |
| Msa0660430 | AT1G19700.3 | 66.667 | 48 | 12 | 1 | 3 | 50 | 378 | 421 | 1.10e-14 | 73.2 |
| Msa0660430 | AT1G19700.5 | 66.667 | 48 | 12 | 1 | 3 | 50 | 378 | 421 | 1.10e-14 | 73.2 |
| Msa0660430 | AT1G19700.4 | 66.667 | 48 | 12 | 1 | 3 | 50 | 378 | 421 | 1.10e-14 | 73.2 |
| Msa0660430 | AT1G19700.2 | 66.667 | 48 | 12 | 1 | 3 | 50 | 378 | 421 | 1.10e-14 | 73.2 |
| Msa0660430 | AT2G35940.3 | 36.000 | 200 | 89 | 5 | 3 | 174 | 412 | 600 | 3.54e-14 | 71.6 |
| Msa0660430 | AT2G35940.1 | 36.000 | 200 | 89 | 5 | 3 | 174 | 412 | 600 | 3.54e-14 | 71.6 |
| Msa0660430 | AT2G35940.2 | 36.000 | 200 | 89 | 5 | 3 | 174 | 412 | 600 | 3.54e-14 | 71.6 |
| Msa0660430 | AT1G75410.1 | 64.583 | 48 | 13 | 1 | 3 | 50 | 373 | 416 | 4.28e-14 | 71.2 |
| Msa0660430 | AT1G75410.2 | 64.583 | 48 | 13 | 1 | 3 | 50 | 373 | 416 | 4.28e-14 | 71.2 |
Find 58 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGACGTTGATAAGCATATTT+TGG | 0.179512 | 4_3:-71161886 | Msa0660430:CDS |
| ACCGGTTCAGTACTCTCTTT+TGG | 0.253768 | 4_3:-71161045 | Msa0660430:CDS |
| AATGGTGGAAGAAATGTATT+TGG | 0.286857 | 4_3:-71161531 | Msa0660430:CDS |
| ACTGAACCGGTTCTTCAATT+TGG | 0.298745 | 4_3:+71161057 | None:intergenic |
| CAAACGCATCCGCAGCTAAT+TGG | 0.298890 | 4_3:+71161285 | None:intergenic |
| TTGAAAAGCAGGTATCAAAT+TGG | 0.320064 | 4_3:-71161586 | Msa0660430:intron |
| CATGAGGTTGAGTTTGAGAT+TGG | 0.355537 | 4_3:+71161417 | None:intergenic |
| CAATTAGCTGCGGATGCGTT+TGG | 0.368691 | 4_3:-71161284 | Msa0660430:CDS |
| TTAATGCAAGAGTGAGACTA+TGG | 0.389784 | 4_3:-71161559 | Msa0660430:CDS |
| GGTGGAGTGTCATTGACGTT+AGG | 0.399182 | 4_3:-71161158 | Msa0660430:CDS |
| TTACAACAACATGGTGGAAA+TGG | 0.409545 | 4_3:-71161134 | Msa0660430:CDS |
| CTCCACCACTGCTGCCACCT+TGG | 0.420187 | 4_3:+71161174 | None:intergenic |
| GGCTTCTTGAGAGACCGGTT+TGG | 0.434607 | 4_3:+71161859 | None:intergenic |
| ATATGCTTATCAACGTCGCT+TGG | 0.454930 | 4_3:+71161891 | None:intergenic |
| TGGTGGAAATGGAGTGAGTT+TGG | 0.455316 | 4_3:-71161123 | Msa0660430:CDS |
| AAATACATTTCTTCCACCAT+TGG | 0.455432 | 4_3:+71161533 | None:intergenic |
| ATGATTGTTGTTGATGATAG+AGG | 0.462600 | 4_3:+71161349 | None:intergenic |
| CACCACTGCTGCCACCTTGG+TGG | 0.462654 | 4_3:+71161177 | None:intergenic |
| AAGGGACCAAATTGAAGAAC+CGG | 0.465720 | 4_3:-71161063 | Msa0660430:CDS |
| TTCTTGAGAGACCGGTTTGG+CGG | 0.471377 | 4_3:+71161862 | None:intergenic |
| TCTTGAGAGACCGGTTTGGC+GGG | 0.473357 | 4_3:+71161863 | None:intergenic |
| GTGGAGTGTCATTGACGTTA+GGG | 0.474230 | 4_3:-71161157 | Msa0660430:CDS |
| TGCCTGGCTTCTTGAGAGAC+CGG | 0.474444 | 4_3:+71161854 | None:intergenic |
| GAACAAATATTATGCCATAC+AGG | 0.476848 | 4_3:-71161013 | Msa0660430:CDS |
| TATGCTTATCAACGTCGCTT+GGG | 0.485472 | 4_3:+71161892 | None:intergenic |
| CACCAAGGTGGCAGCAGTGG+TGG | 0.491693 | 4_3:-71161176 | Msa0660430:CDS |
| AGCTGCGGATGCGTTTGGAT+CGG | 0.498921 | 4_3:-71161279 | Msa0660430:CDS |
| TCCAAAAGAGAGTACTGAAC+CGG | 0.513134 | 4_3:+71161044 | None:intergenic |
| TTCCACCAAGGTGGCAGCAG+TGG | 0.532318 | 4_3:-71161179 | Msa0660430:CDS |
| GACACAATTGCTACATGACT+TGG | 0.534189 | 4_3:-71160979 | Msa0660430:CDS |
| ACGACTCCTTCGAATCGATT+CGG | 0.534329 | 4_3:-71161381 | Msa0660430:CDS |
| AACCGGTCTCTCAAGAAGCC+AGG | 0.535546 | 4_3:-71161856 | Msa0660430:CDS |
| AACACGACAACCTCGGACGG+AGG | 0.540366 | 4_3:-71161485 | Msa0660430:CDS |
| ACATCATTCTTCTTCTGACA+TGG | 0.555858 | 4_3:-71161228 | Msa0660430:CDS |
| ACAAAGAAACACGACAACCT+CGG | 0.564649 | 4_3:-71161492 | Msa0660430:CDS |
| CACATTCCGAATCGATTCGA+AGG | 0.565105 | 4_3:+71161375 | None:intergenic |
| AGAGTCCAATGTTCTATACA+AGG | 0.568503 | 4_3:-71161082 | Msa0660430:CDS |
| ATCTCAAACTCAACCTCATG+AGG | 0.577882 | 4_3:-71161414 | Msa0660430:CDS |
| ATGCCATACAGGAATCTCAT+GGG | 0.578629 | 4_3:-71161002 | Msa0660430:CDS |
| TGGTCCCTTGTATAGAACAT+TGG | 0.582832 | 4_3:+71161077 | None:intergenic |
| AGAAACACGACAACCTCGGA+CGG | 0.587887 | 4_3:-71161488 | Msa0660430:CDS |
| AACATTGGACTCTGTGATGT+TGG | 0.591723 | 4_3:+71161092 | None:intergenic |
| AATATTGTTTCCTCCGTCCG+AGG | 0.597602 | 4_3:+71161475 | None:intergenic |
| GTCCCCATGAGATTCCTGTA+TGG | 0.609295 | 4_3:+71160999 | None:intergenic |
| GAATCGATTCGAAGGAGTCG+TGG | 0.616503 | 4_3:+71161383 | None:intergenic |
| TATGCCATACAGGAATCTCA+TGG | 0.626506 | 4_3:-71161003 | Msa0660430:CDS |
| ATTGGACTCTGTGATGTTGG+TGG | 0.631848 | 4_3:+71161095 | None:intergenic |
| GAGACTATGGAAGCCAATGG+TGG | 0.635999 | 4_3:-71161546 | Msa0660430:CDS |
| GAATCATCACCAATTAGCTG+CGG | 0.636521 | 4_3:-71161294 | Msa0660430:CDS |
| TTGGACTCTGTGATGTTGGT+GGG | 0.640625 | 4_3:+71161096 | None:intergenic |
| AGTGAGACTATGGAAGCCAA+TGG | 0.648201 | 4_3:-71161549 | Msa0660430:CDS |
| GAGTCCAATGTTCTATACAA+GGG | 0.649085 | 4_3:-71161081 | Msa0660430:CDS |
| ATGGTTGCTGCTTACACAAG+TGG | 0.652558 | 4_3:-71161209 | Msa0660430:CDS |
| ACGTTAGGGTTACAACAACA+TGG | 0.673570 | 4_3:-71161143 | Msa0660430:CDS |
| TGCCATACAGGAATCTCATG+GGG | 0.679427 | 4_3:-71161001 | Msa0660430:CDS |
| GGTGAGAGTTTCCACCAAGG+TGG | 0.686723 | 4_3:-71161188 | Msa0660430:CDS |
| AGTGGTGAGAGTTTCCACCA+AGG | 0.759976 | 4_3:-71161191 | Msa0660430:CDS |
| TTAGGGTTACAACAACATGG+TGG | 0.784784 | 4_3:-71161140 | Msa0660430:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTGTTTTTATTTTTTGAAA+TGG | + | chr4_3:71161049-71161068 | None:intergenic | 15.0% |
| !! | CAAAAAATAAAAACAACTAT+TGG | - | chr4_3:71161052-71161071 | Msa0660430:CDS | 15.0% |
| !!! | TACTTCTTTTTATTTTTATG+TGG | - | chr4_3:71161298-71161317 | Msa0660430:CDS | 15.0% |
| !! | ATTAAATAGTCATATATAGA+TGG | - | chr4_3:71161599-71161618 | Msa0660430:intron | 15.0% |
| !! | TTATTAATTAATTGAAAAGC+AGG | - | chr4_3:71161767-71161786 | Msa0660430:intron | 15.0% |
| !!! | GTTGTTTTTATTTTTTGAAA+TGG | + | chr4_3:71161049-71161068 | None:intergenic | 15.0% |
| !! | CAAAAAATAAAAACAACTAT+TGG | - | chr4_3:71161052-71161071 | Msa0660430:CDS | 15.0% |
| !!! | TACTTCTTTTTATTTTTATG+TGG | - | chr4_3:71161298-71161317 | Msa0660430:CDS | 15.0% |
| !! | ATTAAATAGTCATATATAGA+TGG | - | chr4_3:71161599-71161618 | Msa0660430:intron | 15.0% |
| !! | TTATTAATTAATTGAAAAGC+AGG | - | chr4_3:71161767-71161786 | Msa0660430:intron | 15.0% |
| !! | TTCTAATTCTATTAGAAGTA+AGG | - | chr4_3:71160987-71161006 | Msa0660430:CDS | 20.0% |
| !! | TACAAAGGAAGAATTATTTA+AGG | + | chr4_3:71161324-71161343 | None:intergenic | 20.0% |
| !! | TTAAATAATTCTTCCTTTGT+AGG | - | chr4_3:71161323-71161342 | Msa0660430:CDS | 20.0% |
| !! | TAAATAATTCTTCCTTTGTA+GGG | - | chr4_3:71161324-71161343 | Msa0660430:CDS | 20.0% |
| !! | ATTAATATATTTCCCTTCAT+TGG | - | chr4_3:71161550-71161569 | Msa0660430:CDS | 20.0% |
| !! | TTCTAATTCTATTAGAAGTA+AGG | - | chr4_3:71160987-71161006 | Msa0660430:CDS | 20.0% |
| !! | TACAAAGGAAGAATTATTTA+AGG | + | chr4_3:71161324-71161343 | None:intergenic | 20.0% |
| !! | TTAAATAATTCTTCCTTTGT+AGG | - | chr4_3:71161323-71161342 | Msa0660430:CDS | 20.0% |
| !! | TAAATAATTCTTCCTTTGTA+GGG | - | chr4_3:71161324-71161343 | Msa0660430:CDS | 20.0% |
| !! | ATTAATATATTTCCCTTCAT+TGG | - | chr4_3:71161550-71161569 | Msa0660430:CDS | 20.0% |
| ! | GAAACTAACAAAAAATGCTT+AGG | + | chr4_3:71161166-71161185 | None:intergenic | 25.0% |
| ! | ACAACATACATATGAAAAGA+TGG | + | chr4_3:71161209-71161228 | None:intergenic | 25.0% |
| ! | AATTAATATATGACCTTGTG+TGG | + | chr4_3:71161413-71161432 | None:intergenic | 25.0% |
| ! | TAATAAAAAATCAACATGCC+TGG | + | chr4_3:71161529-71161548 | None:intergenic | 25.0% |
| !!! | AATATCAAATTTTAGGGTGA+CGG | + | chr4_3:71161636-71161655 | None:intergenic | 25.0% |
| !!! | ATTGGTTTTGAAGTACATTA+AGG | + | chr4_3:71161932-71161951 | None:intergenic | 25.0% |
| ! | GAAACTAACAAAAAATGCTT+AGG | + | chr4_3:71161166-71161185 | None:intergenic | 25.0% |
| ! | ACAACATACATATGAAAAGA+TGG | + | chr4_3:71161209-71161228 | None:intergenic | 25.0% |
| ! | AATTAATATATGACCTTGTG+TGG | + | chr4_3:71161413-71161432 | None:intergenic | 25.0% |
| ! | TAATAAAAAATCAACATGCC+TGG | + | chr4_3:71161529-71161548 | None:intergenic | 25.0% |
| !!! | AATATCAAATTTTAGGGTGA+CGG | + | chr4_3:71161636-71161655 | None:intergenic | 25.0% |
| !!! | ATTGGTTTTGAAGTACATTA+AGG | + | chr4_3:71161932-71161951 | None:intergenic | 25.0% |
| ATGAAAAGATGGAATCTGAA+TGG | + | chr4_3:71161198-71161217 | None:intergenic | 30.0% | |
| !! | AAAGAGTTTTGTCCAATGAA+GGG | + | chr4_3:71161565-71161584 | None:intergenic | 30.0% |
| !!! | CGCAACTTTGAAAGTTTTTT+TGG | - | chr4_3:71161727-71161746 | Msa0660430:intron | 30.0% |
| TTGAAAAGCAGGTATCAAAT+TGG | - | chr4_3:71161778-71161797 | Msa0660430:intron | 30.0% | |
| AAATACATTTCTTCCACCAT+TGG | + | chr4_3:71161834-71161853 | None:intergenic | 30.0% | |
| ! | AATGGTGGAAGAAATGTATT+TGG | - | chr4_3:71161833-71161852 | Msa0660430:intron | 30.0% |
| !! | ATGATTGTTGTTGATGATAG+AGG | + | chr4_3:71162018-71162037 | None:intergenic | 30.0% |
| GAACAAATATTATGCCATAC+AGG | - | chr4_3:71162351-71162370 | Msa0660430:intron | 30.0% | |
| ATGAAAAGATGGAATCTGAA+TGG | + | chr4_3:71161198-71161217 | None:intergenic | 30.0% | |
| !! | AAAGAGTTTTGTCCAATGAA+GGG | + | chr4_3:71161565-71161584 | None:intergenic | 30.0% |
| !!! | CGCAACTTTGAAAGTTTTTT+TGG | - | chr4_3:71161727-71161746 | Msa0660430:intron | 30.0% |
| TTGAAAAGCAGGTATCAAAT+TGG | - | chr4_3:71161778-71161797 | Msa0660430:intron | 30.0% | |
| AAATACATTTCTTCCACCAT+TGG | + | chr4_3:71161834-71161853 | None:intergenic | 30.0% | |
| ! | AATGGTGGAAGAAATGTATT+TGG | - | chr4_3:71161833-71161852 | Msa0660430:intron | 30.0% |
| !! | ATGATTGTTGTTGATGATAG+AGG | + | chr4_3:71162018-71162037 | None:intergenic | 30.0% |
| GAACAAATATTATGCCATAC+AGG | - | chr4_3:71162351-71162370 | Msa0660430:intron | 30.0% | |
| AACTATTGGCAGTTGTGTTA+TGG | - | chr4_3:71161066-71161085 | Msa0660430:CDS | 35.0% | |
| AAGAAGAAATGACCCTACAA+AGG | + | chr4_3:71161339-71161358 | None:intergenic | 35.0% | |
| !! | CGACGTTGATAAGCATATTT+TGG | - | chr4_3:71161478-71161497 | Msa0660430:CDS | 35.0% |
| !! | GAAAGAGTTTTGTCCAATGA+AGG | + | chr4_3:71161566-71161585 | None:intergenic | 35.0% |
| TTAATGCAAGAGTGAGACTA+TGG | - | chr4_3:71161805-71161824 | Msa0660430:intron | 35.0% | |
| ACATCATTCTTCTTCTGACA+TGG | - | chr4_3:71162136-71162155 | Msa0660430:intron | 35.0% | |
| ! | TTACAACAACATGGTGGAAA+TGG | - | chr4_3:71162230-71162249 | Msa0660430:intron | 35.0% |
| AGAGTCCAATGTTCTATACA+AGG | - | chr4_3:71162282-71162301 | Msa0660430:intron | 35.0% | |
| GAGTCCAATGTTCTATACAA+GGG | - | chr4_3:71162283-71162302 | Msa0660430:intron | 35.0% | |
| AACTATTGGCAGTTGTGTTA+TGG | - | chr4_3:71161066-71161085 | Msa0660430:CDS | 35.0% | |
| AAGAAGAAATGACCCTACAA+AGG | + | chr4_3:71161339-71161358 | None:intergenic | 35.0% | |
| !! | CGACGTTGATAAGCATATTT+TGG | - | chr4_3:71161478-71161497 | Msa0660430:CDS | 35.0% |
| !! | GAAAGAGTTTTGTCCAATGA+AGG | + | chr4_3:71161566-71161585 | None:intergenic | 35.0% |
| TTAATGCAAGAGTGAGACTA+TGG | - | chr4_3:71161805-71161824 | Msa0660430:intron | 35.0% | |
| ACATCATTCTTCTTCTGACA+TGG | - | chr4_3:71162136-71162155 | Msa0660430:intron | 35.0% | |
| ! | TTACAACAACATGGTGGAAA+TGG | - | chr4_3:71162230-71162249 | Msa0660430:intron | 35.0% |
| AGAGTCCAATGTTCTATACA+AGG | - | chr4_3:71162282-71162301 | Msa0660430:intron | 35.0% | |
| GAGTCCAATGTTCTATACAA+GGG | - | chr4_3:71162283-71162302 | Msa0660430:intron | 35.0% | |
| TAATTCATACGTGCCACACA+AGG | - | chr4_3:71161397-71161416 | Msa0660430:CDS | 40.0% | |
| TATGCTTATCAACGTCGCTT+GGG | + | chr4_3:71161475-71161494 | None:intergenic | 40.0% | |
| ATATGCTTATCAACGTCGCT+TGG | + | chr4_3:71161476-71161495 | None:intergenic | 40.0% | |
| ACAAAGAAACACGACAACCT+CGG | - | chr4_3:71161872-71161891 | Msa0660430:CDS | 40.0% | |
| ! | CATGAGGTTGAGTTTGAGAT+TGG | + | chr4_3:71161950-71161969 | None:intergenic | 40.0% |
| ATCTCAAACTCAACCTCATG+AGG | - | chr4_3:71161950-71161969 | Msa0660430:intron | 40.0% | |
| GAATCATCACCAATTAGCTG+CGG | - | chr4_3:71162070-71162089 | Msa0660430:intron | 40.0% | |
| ACGTTAGGGTTACAACAACA+TGG | - | chr4_3:71162221-71162240 | Msa0660430:intron | 40.0% | |
| TTAGGGTTACAACAACATGG+TGG | - | chr4_3:71162224-71162243 | Msa0660430:intron | 40.0% | |
| AACATTGGACTCTGTGATGT+TGG | + | chr4_3:71162275-71162294 | None:intergenic | 40.0% | |
| TGGTCCCTTGTATAGAACAT+TGG | + | chr4_3:71162290-71162309 | None:intergenic | 40.0% | |
| AAGGGACCAAATTGAAGAAC+CGG | - | chr4_3:71162301-71162320 | Msa0660430:intron | 40.0% | |
| ! | ACTGAACCGGTTCTTCAATT+TGG | + | chr4_3:71162310-71162329 | None:intergenic | 40.0% |
| !! | TCCAAAAGAGAGTACTGAAC+CGG | + | chr4_3:71162323-71162342 | None:intergenic | 40.0% |
| ! | GTTCAGTACTCTCTTTTGGA+TGG | - | chr4_3:71162323-71162342 | Msa0660430:intron | 40.0% |
| ! | TACTCTCTTTTGGATGGTGA+AGG | - | chr4_3:71162329-71162348 | Msa0660430:intron | 40.0% |
| TATGCCATACAGGAATCTCA+TGG | - | chr4_3:71162361-71162380 | Msa0660430:intron | 40.0% | |
| ATGCCATACAGGAATCTCAT+GGG | - | chr4_3:71162362-71162381 | Msa0660430:intron | 40.0% | |
| GACACAATTGCTACATGACT+TGG | - | chr4_3:71162385-71162404 | Msa0660430:intron | 40.0% | |
| TAATTCATACGTGCCACACA+AGG | - | chr4_3:71161397-71161416 | Msa0660430:CDS | 40.0% | |
| TATGCTTATCAACGTCGCTT+GGG | + | chr4_3:71161475-71161494 | None:intergenic | 40.0% | |
| ATATGCTTATCAACGTCGCT+TGG | + | chr4_3:71161476-71161495 | None:intergenic | 40.0% | |
| ACAAAGAAACACGACAACCT+CGG | - | chr4_3:71161872-71161891 | Msa0660430:CDS | 40.0% | |
| ! | CATGAGGTTGAGTTTGAGAT+TGG | + | chr4_3:71161950-71161969 | None:intergenic | 40.0% |
| ATCTCAAACTCAACCTCATG+AGG | - | chr4_3:71161950-71161969 | Msa0660430:intron | 40.0% | |
| GAATCATCACCAATTAGCTG+CGG | - | chr4_3:71162070-71162089 | Msa0660430:intron | 40.0% | |
| ACGTTAGGGTTACAACAACA+TGG | - | chr4_3:71162221-71162240 | Msa0660430:intron | 40.0% | |
| TTAGGGTTACAACAACATGG+TGG | - | chr4_3:71162224-71162243 | Msa0660430:intron | 40.0% | |
| AACATTGGACTCTGTGATGT+TGG | + | chr4_3:71162275-71162294 | None:intergenic | 40.0% | |
| TGGTCCCTTGTATAGAACAT+TGG | + | chr4_3:71162290-71162309 | None:intergenic | 40.0% | |
| AAGGGACCAAATTGAAGAAC+CGG | - | chr4_3:71162301-71162320 | Msa0660430:intron | 40.0% | |
| ! | ACTGAACCGGTTCTTCAATT+TGG | + | chr4_3:71162310-71162329 | None:intergenic | 40.0% |
| !! | TCCAAAAGAGAGTACTGAAC+CGG | + | chr4_3:71162323-71162342 | None:intergenic | 40.0% |
| ! | GTTCAGTACTCTCTTTTGGA+TGG | - | chr4_3:71162323-71162342 | Msa0660430:intron | 40.0% |
| ! | TACTCTCTTTTGGATGGTGA+AGG | - | chr4_3:71162329-71162348 | Msa0660430:intron | 40.0% |
| TATGCCATACAGGAATCTCA+TGG | - | chr4_3:71162361-71162380 | Msa0660430:intron | 40.0% | |
| ATGCCATACAGGAATCTCAT+GGG | - | chr4_3:71162362-71162381 | Msa0660430:intron | 40.0% | |
| GACACAATTGCTACATGACT+TGG | - | chr4_3:71162385-71162404 | Msa0660430:intron | 40.0% | |
| AGTGAGACTATGGAAGCCAA+TGG | - | chr4_3:71161815-71161834 | Msa0660430:intron | 45.0% | |
| AATATTGTTTCCTCCGTCCG+AGG | + | chr4_3:71161892-71161911 | None:intergenic | 45.0% | |
| ACGACTCCTTCGAATCGATT+CGG | - | chr4_3:71161983-71162002 | Msa0660430:intron | 45.0% | |
| !! | CACATTCCGAATCGATTCGA+AGG | + | chr4_3:71161992-71162011 | None:intergenic | 45.0% |
| ! | ATGGTTGCTGCTTACACAAG+TGG | - | chr4_3:71162155-71162174 | Msa0660430:intron | 45.0% |
| ! | GTGGAGTGTCATTGACGTTA+GGG | - | chr4_3:71162207-71162226 | Msa0660430:intron | 45.0% |
| TGGTGGAAATGGAGTGAGTT+TGG | - | chr4_3:71162241-71162260 | Msa0660430:intron | 45.0% | |
| TTGGACTCTGTGATGTTGGT+GGG | + | chr4_3:71162271-71162290 | None:intergenic | 45.0% | |
| ATTGGACTCTGTGATGTTGG+TGG | + | chr4_3:71162272-71162291 | None:intergenic | 45.0% | |
| !! | ACCGGTTCAGTACTCTCTTT+TGG | - | chr4_3:71162319-71162338 | Msa0660430:intron | 45.0% |
| TGCCATACAGGAATCTCATG+GGG | - | chr4_3:71162363-71162382 | Msa0660430:intron | 45.0% | |
| AGTGAGACTATGGAAGCCAA+TGG | - | chr4_3:71161815-71161834 | Msa0660430:intron | 45.0% | |
| AATATTGTTTCCTCCGTCCG+AGG | + | chr4_3:71161892-71161911 | None:intergenic | 45.0% | |
| ACGACTCCTTCGAATCGATT+CGG | - | chr4_3:71161983-71162002 | Msa0660430:intron | 45.0% | |
| !! | CACATTCCGAATCGATTCGA+AGG | + | chr4_3:71161992-71162011 | None:intergenic | 45.0% |
| ! | ATGGTTGCTGCTTACACAAG+TGG | - | chr4_3:71162155-71162174 | Msa0660430:intron | 45.0% |
| ! | GTGGAGTGTCATTGACGTTA+GGG | - | chr4_3:71162207-71162226 | Msa0660430:intron | 45.0% |
| TGGTGGAAATGGAGTGAGTT+TGG | - | chr4_3:71162241-71162260 | Msa0660430:intron | 45.0% | |
| TTGGACTCTGTGATGTTGGT+GGG | + | chr4_3:71162271-71162290 | None:intergenic | 45.0% | |
| ATTGGACTCTGTGATGTTGG+TGG | + | chr4_3:71162272-71162291 | None:intergenic | 45.0% | |
| !! | ACCGGTTCAGTACTCTCTTT+TGG | - | chr4_3:71162319-71162338 | Msa0660430:intron | 45.0% |
| TGCCATACAGGAATCTCATG+GGG | - | chr4_3:71162363-71162382 | Msa0660430:intron | 45.0% | |
| !!! | TTTTTTTGTATAATTTTTAT+AGG | - | chr4_3:71161447-71161466 | Msa0660430:CDS | 5.0% |
| !!! | AATATTAATATCAAATTTTA+GGG | + | chr4_3:71161642-71161661 | None:intergenic | 5.0% |
| !!! | AAATATTAATATCAAATTTT+AGG | + | chr4_3:71161643-71161662 | None:intergenic | 5.0% |
| !!! | ATTATTGTATATTTTTTAAT+TGG | - | chr4_3:71161700-71161719 | Msa0660430:intron | 5.0% |
| !!! | TTTTTTTGTATAATTTTTAT+AGG | - | chr4_3:71161447-71161466 | Msa0660430:CDS | 5.0% |
| !!! | AATATTAATATCAAATTTTA+GGG | + | chr4_3:71161642-71161661 | None:intergenic | 5.0% |
| !!! | AAATATTAATATCAAATTTT+AGG | + | chr4_3:71161643-71161662 | None:intergenic | 5.0% |
| !!! | ATTATTGTATATTTTTTAAT+TGG | - | chr4_3:71161700-71161719 | Msa0660430:intron | 5.0% |
| !!! | CATATTTTGGCCCGCCAAAC+CGG | - | chr4_3:71161491-71161510 | Msa0660430:CDS | 50.0% |
| !! | TTCTTGAGAGACCGGTTTGG+CGG | + | chr4_3:71161505-71161524 | None:intergenic | 50.0% |
| GAGACTATGGAAGCCAATGG+TGG | - | chr4_3:71161818-71161837 | Msa0660430:intron | 50.0% | |
| AGAAACACGACAACCTCGGA+CGG | - | chr4_3:71161876-71161895 | Msa0660430:CDS | 50.0% | |
| ! | CGTGGCTTTTGATCCTCATG+AGG | + | chr4_3:71161966-71161985 | None:intergenic | 50.0% |
| !! | GAATCGATTCGAAGGAGTCG+TGG | + | chr4_3:71161984-71162003 | None:intergenic | 50.0% |
| CAAACGCATCCGCAGCTAAT+TGG | + | chr4_3:71162082-71162101 | None:intergenic | 50.0% | |
| CAATTAGCTGCGGATGCGTT+TGG | - | chr4_3:71162080-71162099 | Msa0660430:intron | 50.0% | |
| AGTGGTGAGAGTTTCCACCA+AGG | - | chr4_3:71162173-71162192 | Msa0660430:intron | 50.0% | |
| ! | GGTGGAGTGTCATTGACGTT+AGG | - | chr4_3:71162206-71162225 | Msa0660430:intron | 50.0% |
| GTCCCCATGAGATTCCTGTA+TGG | + | chr4_3:71162368-71162387 | None:intergenic | 50.0% | |
| !!! | CATATTTTGGCCCGCCAAAC+CGG | - | chr4_3:71161491-71161510 | Msa0660430:CDS | 50.0% |
| !! | TTCTTGAGAGACCGGTTTGG+CGG | + | chr4_3:71161505-71161524 | None:intergenic | 50.0% |
| GAGACTATGGAAGCCAATGG+TGG | - | chr4_3:71161818-71161837 | Msa0660430:intron | 50.0% | |
| AGAAACACGACAACCTCGGA+CGG | - | chr4_3:71161876-71161895 | Msa0660430:CDS | 50.0% | |
| ! | CGTGGCTTTTGATCCTCATG+AGG | + | chr4_3:71161966-71161985 | None:intergenic | 50.0% |
| !! | GAATCGATTCGAAGGAGTCG+TGG | + | chr4_3:71161984-71162003 | None:intergenic | 50.0% |
| CAAACGCATCCGCAGCTAAT+TGG | + | chr4_3:71162082-71162101 | None:intergenic | 50.0% | |
| CAATTAGCTGCGGATGCGTT+TGG | - | chr4_3:71162080-71162099 | Msa0660430:intron | 50.0% | |
| AGTGGTGAGAGTTTCCACCA+AGG | - | chr4_3:71162173-71162192 | Msa0660430:intron | 50.0% | |
| ! | GGTGGAGTGTCATTGACGTT+AGG | - | chr4_3:71162206-71162225 | Msa0660430:intron | 50.0% |
| GTCCCCATGAGATTCCTGTA+TGG | + | chr4_3:71162368-71162387 | None:intergenic | 50.0% | |
| !! | TCTTGAGAGACCGGTTTGGC+GGG | + | chr4_3:71161504-71161523 | None:intergenic | 55.0% |
| GGCTTCTTGAGAGACCGGTT+TGG | + | chr4_3:71161508-71161527 | None:intergenic | 55.0% | |
| AACCGGTCTCTCAAGAAGCC+AGG | - | chr4_3:71161508-71161527 | Msa0660430:CDS | 55.0% | |
| TGCCTGGCTTCTTGAGAGAC+CGG | + | chr4_3:71161513-71161532 | None:intergenic | 55.0% | |
| AGCTGCGGATGCGTTTGGAT+CGG | - | chr4_3:71162085-71162104 | Msa0660430:intron | 55.0% | |
| GGTGAGAGTTTCCACCAAGG+TGG | - | chr4_3:71162176-71162195 | Msa0660430:intron | 55.0% | |
| !! | TCTTGAGAGACCGGTTTGGC+GGG | + | chr4_3:71161504-71161523 | None:intergenic | 55.0% |
| GGCTTCTTGAGAGACCGGTT+TGG | + | chr4_3:71161508-71161527 | None:intergenic | 55.0% | |
| AACCGGTCTCTCAAGAAGCC+AGG | - | chr4_3:71161508-71161527 | Msa0660430:CDS | 55.0% | |
| TGCCTGGCTTCTTGAGAGAC+CGG | + | chr4_3:71161513-71161532 | None:intergenic | 55.0% | |
| AGCTGCGGATGCGTTTGGAT+CGG | - | chr4_3:71162085-71162104 | Msa0660430:intron | 55.0% | |
| GGTGAGAGTTTCCACCAAGG+TGG | - | chr4_3:71162176-71162195 | Msa0660430:intron | 55.0% | |
| AACACGACAACCTCGGACGG+AGG | - | chr4_3:71161879-71161898 | Msa0660430:CDS | 60.0% | |
| TTCCACCAAGGTGGCAGCAG+TGG | - | chr4_3:71162185-71162204 | Msa0660430:intron | 60.0% | |
| AACACGACAACCTCGGACGG+AGG | - | chr4_3:71161879-71161898 | Msa0660430:CDS | 60.0% | |
| TTCCACCAAGGTGGCAGCAG+TGG | - | chr4_3:71162185-71162204 | Msa0660430:intron | 60.0% | |
| CACCACTGCTGCCACCTTGG+TGG | + | chr4_3:71162190-71162209 | None:intergenic | 65.0% | |
| CACCAAGGTGGCAGCAGTGG+TGG | - | chr4_3:71162188-71162207 | Msa0660430:intron | 65.0% | |
| CTCCACCACTGCTGCCACCT+TGG | + | chr4_3:71162193-71162212 | None:intergenic | 65.0% | |
| CACCACTGCTGCCACCTTGG+TGG | + | chr4_3:71162190-71162209 | None:intergenic | 65.0% | |
| CACCAAGGTGGCAGCAGTGG+TGG | - | chr4_3:71162188-71162207 | Msa0660430:intron | 65.0% | |
| CTCCACCACTGCTGCCACCT+TGG | + | chr4_3:71162193-71162212 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 71160974 | 71162412 | 71160974 | ID=Msa0660430;Name=Msa0660430 |
| chr4_3 | mRNA | 71160974 | 71162412 | 71160974 | ID=Msa0660430-mRNA-1;Parent=Msa0660430;Name=Msa0660430-mRNA-1;_AED=0.39;_eAED=0.40;_QI=0|0|0|1|0|0|4|0|233 |
| chr4_3 | exon | 71162408 | 71162412 | 71162408 | ID=Msa0660430-mRNA-1:exon:21298;Parent=Msa0660430-mRNA-1 |
| chr4_3 | exon | 71161853 | 71161917 | 71161853 | ID=Msa0660430-mRNA-1:exon:21297;Parent=Msa0660430-mRNA-1 |
| chr4_3 | exon | 71161638 | 71161645 | 71161638 | ID=Msa0660430-mRNA-1:exon:21296;Parent=Msa0660430-mRNA-1 |
| chr4_3 | exon | 71160974 | 71161597 | 71160974 | ID=Msa0660430-mRNA-1:exon:21295;Parent=Msa0660430-mRNA-1 |
| chr4_3 | CDS | 71162408 | 71162412 | 71162408 | ID=Msa0660430-mRNA-1:cds;Parent=Msa0660430-mRNA-1 |
| chr4_3 | CDS | 71161853 | 71161917 | 71161853 | ID=Msa0660430-mRNA-1:cds;Parent=Msa0660430-mRNA-1 |
| chr4_3 | CDS | 71161638 | 71161645 | 71161638 | ID=Msa0660430-mRNA-1:cds;Parent=Msa0660430-mRNA-1 |
| chr4_3 | CDS | 71160974 | 71161597 | 71160974 | ID=Msa0660430-mRNA-1:cds;Parent=Msa0660430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
