AlfalfaGEDB | Msa1363270

M. sativa cultivar zhongmu-4 / Msa1363270

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006355 GO:0008150 GO:0009506 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030054 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055044 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF07526.14

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1363270	XP_013447087.1	96.226	318	2	2	1	318	88	395	0.0	595

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1363270	sp\|Q38897\|BEL1_ARATH	42.487	386	142	11	7	318	38	417	9.20e-73	238

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1363270	A0A072TUA6	96.226	318	2	2	1	318	88	395	0.0	595

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0007810	Msa1363270	0.808542	2.942191e-50	-8.615850e-47
Msa0027610	Msa1363270	0.816929	4.291051e-52	-8.615850e-47
Msa0044010	Msa1363270	-0.833436	5.340466e-56	-8.615850e-47
Msa0071640	Msa1363270	-0.806421	8.292127e-50	-8.615850e-47
Msa0075370	Msa1363270	0.827393	1.603792e-54	-8.615850e-47
Msa0079320	Msa1363270	0.834769	2.474206e-56	-8.615850e-47
Msa0091300	Msa1363270	0.833080	6.547251e-56	-8.615850e-47
Msa0099090	Msa1363270	0.819269	1.268970e-52	-8.615850e-47
Msa1359880	Msa1363270	0.802922	4.458169e-49	-8.615850e-47
Msa1363270	Msa1363280	0.882087	1.397400e-70	-8.615850e-47
Msa1363270	Msa1398310	0.802659	5.050178e-49	-8.615850e-47
Msa1363270	Msa1408990	-0.802840	4.635854e-49	-8.615850e-47
Msa0646180	Msa1363270	0.806317	8.724268e-50	-8.615850e-47
Msa0649530	Msa1363270	0.811170	8.005667e-51	-8.615850e-47
Msa0651870	Msa1363270	-0.815521	8.859418e-52	-8.615850e-47
Msa0651890	Msa1363270	-0.815614	8.446047e-52	-8.615850e-47
Msa0660430	Msa1363270	0.832965	6.996481e-56	-8.615850e-47
Msa0691740	Msa1363270	0.816576	5.148917e-52	-8.615850e-47
Msa0722660	Msa1363270	0.807155	5.803896e-50	-8.615850e-47
Msa0801320	Msa1363270	0.802314	5.950559e-49	-8.615850e-47
Msa0801630	Msa1363270	0.800504	1.397076e-48	-8.615850e-47
Msa0123310	Msa1363270	0.801025	1.093793e-48	-8.615850e-47
Msa0167800	Msa1363270	0.811863	5.658801e-51	-8.615850e-47
Msa0169710	Msa1363270	-0.823778	1.153184e-53	-8.615850e-47
Msa0172110	Msa1363270	0.820412	6.955664e-53	-8.615850e-47
Msa0183840	Msa1363270	-0.807552	4.779699e-50	-8.615850e-47
Msa0195030	Msa1363270	-0.840949	6.386762e-58	-8.615850e-47
Msa0237180	Msa1363270	-0.842204	2.982820e-58	-8.615850e-47
Msa1258060	Msa1363270	-0.803926	2.760255e-49	-8.615850e-47
Msa1300370	Msa1363270	0.815508	8.916791e-52	-8.615850e-47
Msa0370350	Msa1363270	0.829777	4.257869e-55	-8.615850e-47
Msa0417850	Msa1363270	0.810364	1.196092e-50	-8.615850e-47
Msa0430130	Msa1363270	-0.806899	6.574719e-50	-8.615850e-47
Msa0432260	Msa1363270	0.800557	1.362660e-48	-8.615850e-47
Msa0480940	Msa1363270	-0.804659	1.942183e-49	-8.615850e-47
Msa1014550	Msa1363270	0.804080	2.564480e-49	-8.615850e-47
Msa1019090	Msa1363270	-0.839715	1.342252e-57	-8.615850e-47
Msa1029570	Msa1363270	0.808131	3.601553e-50	-8.615850e-47
Msa1093190	Msa1363270	0.808115	3.628774e-50	-8.615850e-47
Msa0266380	Msa1363270	0.809644	1.708863e-50	-8.615850e-47
Msa0274940	Msa1363270	-0.812152	4.894989e-51	-8.615850e-47
Msa0315660	Msa1363270	-0.840359	9.119857e-58	-8.615850e-47
Msa0316140	Msa1363270	-0.817890	2.607584e-52	-8.615850e-47
Msa0339970	Msa1363270	0.803143	4.012250e-49	-8.615850e-47
Msa0341860	Msa1363270	0.824196	9.199363e-54	-8.615850e-47
Msa0362440	Msa1363270	0.810355	1.200914e-50	-8.615850e-47
Msa1169780	Msa1363270	0.806271	8.921133e-50	-8.615850e-47
Msa1181370	Msa1363270	0.803118	4.060681e-49	-8.615850e-47
Msa1207880	Msa1363270	-0.801125	1.043302e-48	-8.615850e-47
Msa1213470	Msa1363270	0.814254	1.691825e-51	-8.615850e-47
Msa0525940	Msa1363270	0.807071	6.044705e-50	-8.615850e-47
Msa0526490	Msa1363270	0.964349	3.250694e-123	-8.615850e-47
Msa0526500	Msa1363270	0.886236	4.077411e-72	-8.615850e-47
Msa0540160	Msa1363270	0.802979	4.337562e-49	-8.615850e-47
Msa0545750	Msa1363270	0.816731	4.755003e-52	-8.615850e-47
Msa0571880	Msa1363270	0.865544	5.467503e-65	-8.615850e-47
Msa0602320	Msa1363270	0.806262	8.961418e-50	-8.615850e-47
Msa0936950	Msa1363270	-0.800064	1.716959e-48	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1363270	MtrunA17_Chr8g0387321	96.226	318	2	2	1	318	88	395	0.0	595
Msa1363270	MtrunA17_Chr5g0403251	52.790	233	92	3	97	318	325	550	4.40e-71	234
Msa1363270	MtrunA17_Chr8g0373801	51.807	249	94	4	96	318	354	602	3.02e-68	228
Msa1363270	MtrunA17_Chr1g0155681	47.321	224	88	5	111	318	173	382	1.04e-55	191
Msa1363270	MtrunA17_Chr1g0177751	45.133	226	95	3	108	318	161	372	6.96e-54	186
Msa1363270	MtrunA17_Chr3g0141941	41.949	236	98	6	101	318	157	371	1.73e-50	174
Msa1363270	MtrunA17_Chr7g0267481	44.561	285	134	7	45	318	113	384	1.76e-48	171
Msa1363270	MtrunA17_Chr4g0025521	46.512	215	108	3	108	318	217	428	3.09e-46	166
Msa1363270	MtrunA17_Chr4g0028701	38.095	252	115	5	108	318	245	496	5.05e-40	148
Msa1363270	MtrunA17_Chr4g0008591	39.556	225	88	6	108	318	196	386	1.56e-37	140
Msa1363270	MtrunA17_Chr7g0240371	39.623	212	110	5	108	318	137	331	3.31e-37	139
Msa1363270	MtrunA17_Chr3g0141931	39.367	221	113	8	108	318	165	374	3.50e-36	135
Msa1363270	MtrunA17_Chr2g0327021	38.565	223	120	5	108	318	248	465	6.91e-34	130
Msa1363270	MtrunA17_Chr1g0151681	33.803	142	85	4	177	318	318	450	1.71e-17	82.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1363270	AT5G41410.1	42.487	386	142	11	7	318	38	417	9.35e-74	238
Msa1363270	AT4G36870.4	52.752	218	91	3	108	318	312	524	2.42e-67	220
Msa1363270	AT4G36870.3	52.752	218	91	3	108	318	312	524	3.46e-67	220
Msa1363270	AT2G23760.2	51.152	217	103	1	105	318	234	450	2.43e-66	219
Msa1363270	AT2G23760.1	51.152	217	103	1	105	318	234	450	2.43e-66	219
Msa1363270	AT2G23760.3	51.152	217	103	1	105	318	234	450	2.43e-66	219
Msa1363270	AT4G36870.2	52.752	218	91	3	108	318	312	524	6.22e-66	220
Msa1363270	AT4G36870.1	52.752	218	91	3	108	318	312	524	6.22e-66	220
Msa1363270	AT2G23760.4	51.152	217	103	1	105	318	234	450	1.96e-65	218
Msa1363270	AT1G75410.3	50.000	212	91	5	112	318	171	372	1.26e-56	188
Msa1363270	AT1G19700.1	49.524	210	102	3	112	318	169	377	5.56e-56	190
Msa1363270	AT1G19700.3	49.524	210	102	3	112	318	169	377	5.56e-56	190
Msa1363270	AT1G19700.5	49.524	210	102	3	112	318	169	377	5.56e-56	190
Msa1363270	AT1G19700.4	49.524	210	102	3	112	318	169	377	5.56e-56	190
Msa1363270	AT1G19700.2	49.524	210	102	3	112	318	169	377	5.56e-56	190
Msa1363270	AT1G75410.1	49.761	209	96	4	112	318	171	372	1.12e-55	189
Msa1363270	AT1G75410.2	49.761	209	96	4	112	318	171	372	1.12e-55	189
Msa1363270	AT4G34610.2	44.574	258	126	3	68	318	93	340	1.61e-55	189
Msa1363270	AT4G34610.4	44.574	258	126	3	68	318	93	340	1.61e-55	189
Msa1363270	AT4G34610.3	44.574	258	126	3	68	318	93	340	1.61e-55	189
Msa1363270	AT4G34610.1	44.574	258	126	3	68	318	93	340	1.61e-55	189
Msa1363270	AT2G16400.1	47.867	211	95	4	109	318	115	311	8.05e-53	181
Msa1363270	AT2G35940.3	42.955	291	124	9	61	318	130	411	1.14e-51	181
Msa1363270	AT2G35940.1	42.955	291	124	9	61	318	130	411	1.14e-51	181
Msa1363270	AT2G35940.2	42.955	291	124	9	61	318	130	411	1.14e-51	181
Msa1363270	AT1G75430.1	41.566	166	87	3	162	318	64	228	3.16e-37	135
Msa1363270	AT1G75430.2	41.566	166	87	3	162	318	64	228	6.20e-37	134
Msa1363270	AT2G27220.1	36.098	205	99	4	114	318	82	254	3.08e-33	127
Msa1363270	AT2G27220.3	36.098	205	99	4	114	318	82	254	3.08e-33	127
Msa1363270	AT2G27990.2	36.187	257	129	7	69	318	222	450	2.13e-32	125
Msa1363270	AT5G02030.1	37.727	220	113	5	108	318	170	374	4.09e-32	125
Msa1363270	AT2G27990.1	36.187	257	129	7	69	318	222	450	6.38e-32	125
Msa1363270	AT2G27220.2	33.632	223	98	5	114	318	82	272	1.69e-29	117
Msa1363270	AT4G32980.1	29.384	211	136	4	108	318	201	398	3.18e-18	85.5
Msa1363270	AT4G32980.2	29.384	211	136	4	108	318	201	398	3.18e-18	85.5

Find 71 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTTTCACCCTTTGTTGTTCC+AGG	0.285076	tig0018036:-86166	None:intergenic
TGGGTATATGAAGACTAATT+TGG	0.285694	tig0018036:+84446	None:intergenic
GTGAATTAATTTATATTATG+AGG	0.293121	tig0018036:-84660	None:intergenic
AACGTTCTGTTTCTATTCTC+AGG	0.300212	tig0018036:+86293	Msa1363270:CDS
TCAACAAACCCTTCCTCTAT+TGG	0.302539	tig0018036:+85247	Msa1363270:CDS
CTGTTTCTATTCTCAGGGCT+TGG	0.328263	tig0018036:+86299	Msa1363270:CDS
TTTGTTGTTCCAGGTGCAAC+AGG	0.331439	tig0018036:-86157	None:intergenic
TTGGTTGTATTTATAAATCT+TGG	0.335531	tig0018036:+84465	Msa1363270:five_prime_UTR
TGCGAAAGTTTATTCAGCTT+TGG	0.371886	tig0018036:+86042	Msa1363270:CDS
TTTGAAGCTGTAGCTGGAAA+TGG	0.404194	tig0018036:+86016	Msa1363270:CDS
ATAATATTTAGGTTGATAGA+AGG	0.409270	tig0018036:+85951	Msa1363270:intron
AAGATGTTGTTGATGTTGTT+TGG	0.412598	tig0018036:-84883	None:intergenic
AGTTCAACAACAAGCAAAGT+TGG	0.418663	tig0018036:+85452	Msa1363270:CDS
TGAAATCTTGATGTTGTTGT+TGG	0.430842	tig0018036:-85042	None:intergenic
GTAGTGAGATTAAACATCTC+TGG	0.433803	tig0018036:-84837	None:intergenic
TGAATTAATTTATATTATGA+GGG	0.438589	tig0018036:-84659	None:intergenic
CTTAACAAGTGATGAGTCAA+TGG	0.447843	tig0018036:-84489	None:intergenic
AATCATCATTTACAAGATCA+AGG	0.456108	tig0018036:+85301	Msa1363270:CDS
TGGATTTGTGTTTGAATCGT+TGG	0.458396	tig0018036:-84798	None:intergenic
TCATCATTTGAAGCTGTAGC+TGG	0.459401	tig0018036:+86010	Msa1363270:CDS
GAGATGTTTAATCTCACTAC+AGG	0.460320	tig0018036:+84840	Msa1363270:five_prime_UTR
AGAAGATGAGATAGCTAGAG+AGG	0.471063	tig0018036:-84584	None:intergenic
ATGTGGAAAACAAATTTCTC+AGG	0.472948	tig0018036:+84948	Msa1363270:five_prime_UTR
GTTCAACAACAAGCAAAGTT+GGG	0.479946	tig0018036:+85453	Msa1363270:CDS
AAAGAGAGTATATGATAGCA+TGG	0.487912	tig0018036:+84545	Msa1363270:five_prime_UTR
AGAATAGAAACAGAACGTTC+AGG	0.489616	tig0018036:-86289	None:intergenic
AAAAGATTGTAAACCAATAG+AGG	0.498080	tig0018036:-85260	None:intergenic
ACTACAGGGATGGAGATGAT+AGG	0.502219	tig0018036:+84855	Msa1363270:five_prime_UTR
TCATTGAGAAGTTCTTGTGC+TGG	0.509475	tig0018036:-85367	None:intergenic
ACGTTCTGTTTCTATTCTCA+GGG	0.510571	tig0018036:+86294	Msa1363270:CDS
TTACAAGATCAAGGGTATCA+AGG	0.518553	tig0018036:+85310	Msa1363270:CDS
TCAAACAACAAGAAAAGCAA+TGG	0.524152	tig0018036:+86123	Msa1363270:CDS
ACATGATGGAAACACATCCT+TGG	0.528940	tig0018036:+86248	Msa1363270:CDS
ATAATATACCTCTTCTAGCA+TGG	0.533662	tig0018036:-85575	None:intergenic
GTTGCACCTGGAACAACAAA+GGG	0.538924	tig0018036:+86160	Msa1363270:CDS
CAAACAACAAGAAAAGCAAT+GGG	0.541294	tig0018036:+86124	Msa1363270:CDS
GATTGTAAACCAATAGAGGA+AGG	0.551563	tig0018036:-85256	None:intergenic
CTGGATCCGACACAAAACCT+TGG	0.555288	tig0018036:-84818	None:intergenic
AGCACTATTGTAATCAAATG+AGG	0.555931	tig0018036:+85978	Msa1363270:CDS
GGTCTTTCATTACCTTCACA+AGG	0.569310	tig0018036:-85196	None:intergenic
ATTTCAACAAATCAACATGA+TGG	0.573334	tig0018036:+86234	Msa1363270:CDS
TGTTGCACCTGGAACAACAA+AGG	0.574394	tig0018036:+86159	Msa1363270:CDS
GAAGATGAGATAGCTAGAGA+GGG	0.581581	tig0018036:-84583	None:intergenic
GTTTAATCTCACTACAGGGA+TGG	0.583583	tig0018036:+84845	Msa1363270:five_prime_UTR
GAAGATGACAAAACATCAAG+TGG	0.589082	tig0018036:+84759	Msa1363270:five_prime_UTR
GCTCCTTTCCATGCTAGAAG+AGG	0.590546	tig0018036:+85567	Msa1363270:CDS
AAACTAAGTCAACAACATGT+TGG	0.592199	tig0018036:+84972	Msa1363270:five_prime_UTR
ACGATTCAAACACAAATCCA+AGG	0.592839	tig0018036:+84801	Msa1363270:five_prime_UTR
ATCATCATTTACAAGATCAA+GGG	0.598993	tig0018036:+85302	Msa1363270:CDS
ATTGTAAACCAATAGAGGAA+GGG	0.599402	tig0018036:-85255	None:intergenic
ATACCTCTTCTAGCATGGAA+AGG	0.599613	tig0018036:-85570	None:intergenic
TTGTTGTTCCAGGTGCAACA+GGG	0.600884	tig0018036:-86156	None:intergenic
GAATTAATTTATATTATGAG+GGG	0.604772	tig0018036:-84658	None:intergenic
GAGAGTGAAAGTCCTTGACT+TGG	0.606569	tig0018036:-85217	None:intergenic
ATTCATCATCTTCACATCAG+TGG	0.610423	tig0018036:+85137	Msa1363270:CDS
GTCTTTCATTACCTTCACAA+GGG	0.619695	tig0018036:-85195	None:intergenic
ACACAACAAACTCTGTCATG+TGG	0.622405	tig0018036:+84931	Msa1363270:five_prime_UTR
AGACCACGTTGAGGTCTCCA+AGG	0.624695	tig0018036:-86265	None:intergenic
CAACAAAGGGTGAAACACCT+AGG	0.627180	tig0018036:+86173	Msa1363270:CDS
GATGACAAAACATCAAGTGG+TGG	0.632307	tig0018036:+84762	Msa1363270:five_prime_UTR
TTGTAATCAAATGAGGAGTG+TGG	0.639918	tig0018036:+85985	Msa1363270:CDS
TGGGAAGATGATAACAACAA+TGG	0.648007	tig0018036:+85472	Msa1363270:CDS
GGTAATGAAAGACCAAGTCA+AGG	0.652296	tig0018036:+85205	Msa1363270:CDS
GAAGATGATAACAACAATGG+TGG	0.654808	tig0018036:+85475	Msa1363270:CDS
GGAGCATGAAAAGCATAGTG+TGG	0.654941	tig0018036:-84637	None:intergenic
TGATCAGAATCTAAACAACA+TGG	0.698586	tig0018036:+85087	Msa1363270:CDS
AGATGTTTAATCTCACTACA+GGG	0.700473	tig0018036:+84841	Msa1363270:five_prime_UTR
CAATTCAACAAACTCTACAG+AGG	0.717090	tig0018036:-85527	None:intergenic
CATCCTTGGAGACCTCAACG+TGG	0.740668	tig0018036:+86262	Msa1363270:CDS
CGTTCAGGAAGACCACGTTG+AGG	0.743992	tig0018036:-86274	None:intergenic
GAGAGTATATGATAGCATGG+AGG	0.763200	tig0018036:+84548	Msa1363270:five_prime_UTR

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TGAATTAATTTATATTATGA+GGG	-	tig0018036:84662-84681	None:intergenic	10.0%
!!!	TTTTGTGTATAATAATATTT+AGG	+	tig0018036:85940-85959	Msa1363270:intron	10.0%
!!	TGAATTAATTTATATTATGA+GGG	-	tig0018036:84662-84681	None:intergenic	10.0%
!!!	TTTTGTGTATAATAATATTT+AGG	+	tig0018036:85940-85959	Msa1363270:intron	10.0%
!!	GAATTAATTTATATTATGAG+GGG	-	tig0018036:84661-84680	None:intergenic	15.0%
!!	GTGAATTAATTTATATTATG+AGG	-	tig0018036:84663-84682	None:intergenic	15.0%
!!!	AGTTTGAAAATTTTTATTCA+TGG	+	tig0018036:84719-84738	Msa1363270:five_prime_UTR	15.0%
!!	TTATGACTTGAAATAAATTA+AGG	-	tig0018036:85673-85692	None:intergenic	15.0%
!!	GAATTAATTTATATTATGAG+GGG	-	tig0018036:84661-84680	None:intergenic	15.0%
!!	GTGAATTAATTTATATTATG+AGG	-	tig0018036:84663-84682	None:intergenic	15.0%
!!!	AGTTTGAAAATTTTTATTCA+TGG	+	tig0018036:84719-84738	Msa1363270:five_prime_UTR	15.0%
!!	TTATGACTTGAAATAAATTA+AGG	-	tig0018036:85673-85692	None:intergenic	15.0%
!!	TTGGTTGTATTTATAAATCT+TGG	+	tig0018036:84465-84484	Msa1363270:five_prime_UTR	20.0%
!!!	ATGATAGAAATTTTCATTCA+TGG	-	tig0018036:85020-85039	None:intergenic	20.0%
!!	TTAAAAAGTTTCAATTGTCA+CGG	-	tig0018036:85811-85830	None:intergenic	20.0%
!!!	TGAAAACTAACAGTTTTTAT+TGG	-	tig0018036:85856-85875	None:intergenic	20.0%
!!!	AGTTTTCATCTTTATTTCTA+TGG	+	tig0018036:85868-85887	Msa1363270:intron	20.0%
!!!	ATAATATTTAGGTTGATAGA+AGG	+	tig0018036:85951-85970	Msa1363270:intron	20.0%
!!	TTGGTTGTATTTATAAATCT+TGG	+	tig0018036:84465-84484	Msa1363270:five_prime_UTR	20.0%
!!!	ATGATAGAAATTTTCATTCA+TGG	-	tig0018036:85020-85039	None:intergenic	20.0%
!!	TTAAAAAGTTTCAATTGTCA+CGG	-	tig0018036:85811-85830	None:intergenic	20.0%
!!!	TGAAAACTAACAGTTTTTAT+TGG	-	tig0018036:85856-85875	None:intergenic	20.0%
!!!	AGTTTTCATCTTTATTTCTA+TGG	+	tig0018036:85868-85887	Msa1363270:intron	20.0%
!!!	ATAATATTTAGGTTGATAGA+AGG	+	tig0018036:85951-85970	Msa1363270:intron	20.0%
!	AAAAGATTGTAAACCAATAG+AGG	-	tig0018036:85263-85282	None:intergenic	25.0%
!	AATCATCATTTACAAGATCA+AGG	+	tig0018036:85301-85320	Msa1363270:CDS	25.0%
!	ATCATCATTTACAAGATCAA+GGG	+	tig0018036:85302-85321	Msa1363270:CDS	25.0%
!!	ATCAAAGACTCTTAACTTTT+TGG	+	tig0018036:85692-85711	Msa1363270:intron	25.0%
!	TAAAAAGTTTCAATTGTCAC+GGG	-	tig0018036:85810-85829	None:intergenic	25.0%
!	TATTGGTAAGAAAAGGAAAA+AGG	-	tig0018036:85839-85858	None:intergenic	25.0%
!!	CAGTTTTTATTGGTAAGAAA+AGG	-	tig0018036:85846-85865	None:intergenic	25.0%
!!!	TTTCATCTTTATTTCTATGG+TGG	+	tig0018036:85871-85890	Msa1363270:intron	25.0%
!!!	ATTTTAGGTGTTTGAAAGAT+GGG	+	tig0018036:86086-86105	Msa1363270:CDS	25.0%
!	ATTTCAACAAATCAACATGA+TGG	+	tig0018036:86234-86253	Msa1363270:CDS	25.0%
!	AAAAGATTGTAAACCAATAG+AGG	-	tig0018036:85263-85282	None:intergenic	25.0%
!	AATCATCATTTACAAGATCA+AGG	+	tig0018036:85301-85320	Msa1363270:CDS	25.0%
!	ATCATCATTTACAAGATCAA+GGG	+	tig0018036:85302-85321	Msa1363270:CDS	25.0%
!!	ATCAAAGACTCTTAACTTTT+TGG	+	tig0018036:85692-85711	Msa1363270:intron	25.0%
!	TAAAAAGTTTCAATTGTCAC+GGG	-	tig0018036:85810-85829	None:intergenic	25.0%
!	TATTGGTAAGAAAAGGAAAA+AGG	-	tig0018036:85839-85858	None:intergenic	25.0%
!!	CAGTTTTTATTGGTAAGAAA+AGG	-	tig0018036:85846-85865	None:intergenic	25.0%
!!!	TTTCATCTTTATTTCTATGG+TGG	+	tig0018036:85871-85890	Msa1363270:intron	25.0%
!!!	ATTTTAGGTGTTTGAAAGAT+GGG	+	tig0018036:86086-86105	Msa1363270:CDS	25.0%
!	ATTTCAACAAATCAACATGA+TGG	+	tig0018036:86234-86253	Msa1363270:CDS	25.0%
!	AAAGAGAGTATATGATAGCA+TGG	+	tig0018036:84545-84564	Msa1363270:five_prime_UTR	30.0%
	AGATGTTTAATCTCACTACA+GGG	+	tig0018036:84841-84860	Msa1363270:five_prime_UTR	30.0%
	AAGATGTTGTTGATGTTGTT+TGG	-	tig0018036:84886-84905	None:intergenic	30.0%
	ATGTGGAAAACAAATTTCTC+AGG	+	tig0018036:84948-84967	Msa1363270:five_prime_UTR	30.0%
	AAACTAAGTCAACAACATGT+TGG	+	tig0018036:84972-84991	Msa1363270:five_prime_UTR	30.0%
	TGAAATCTTGATGTTGTTGT+TGG	-	tig0018036:85045-85064	None:intergenic	30.0%
	TGATCAGAATCTAAACAACA+TGG	+	tig0018036:85087-85106	Msa1363270:CDS	30.0%
	ATTGTAAACCAATAGAGGAA+GGG	-	tig0018036:85258-85277	None:intergenic	30.0%
	ATAATATACCTCTTCTAGCA+TGG	-	tig0018036:85578-85597	None:intergenic	30.0%
!	ATGAGATTGGTGTCTTAATT+TGG	+	tig0018036:85727-85746	Msa1363270:intron	30.0%
	AAAAAGTTTCAATTGTCACG+GGG	-	tig0018036:85809-85828	None:intergenic	30.0%
	AGCACTATTGTAATCAAATG+AGG	+	tig0018036:85978-85997	Msa1363270:CDS	30.0%
!	AAGCTATGTCAAGACATTTT+AGG	+	tig0018036:86071-86090	Msa1363270:CDS	30.0%
!!	CATTTTAGGTGTTTGAAAGA+TGG	+	tig0018036:86085-86104	Msa1363270:CDS	30.0%
	TCAAACAACAAGAAAAGCAA+TGG	+	tig0018036:86123-86142	Msa1363270:CDS	30.0%
	CAAACAACAAGAAAAGCAAT+GGG	+	tig0018036:86124-86143	Msa1363270:CDS	30.0%
!!	CTATCAAGTATTTTAAGCCT+AGG	-	tig0018036:86193-86212	None:intergenic	30.0%
!	AAAGAGAGTATATGATAGCA+TGG	+	tig0018036:84545-84564	Msa1363270:five_prime_UTR	30.0%
	AGATGTTTAATCTCACTACA+GGG	+	tig0018036:84841-84860	Msa1363270:five_prime_UTR	30.0%
	AAGATGTTGTTGATGTTGTT+TGG	-	tig0018036:84886-84905	None:intergenic	30.0%
	ATGTGGAAAACAAATTTCTC+AGG	+	tig0018036:84948-84967	Msa1363270:five_prime_UTR	30.0%
	AAACTAAGTCAACAACATGT+TGG	+	tig0018036:84972-84991	Msa1363270:five_prime_UTR	30.0%
	TGAAATCTTGATGTTGTTGT+TGG	-	tig0018036:85045-85064	None:intergenic	30.0%
	TGATCAGAATCTAAACAACA+TGG	+	tig0018036:85087-85106	Msa1363270:CDS	30.0%
	ATTGTAAACCAATAGAGGAA+GGG	-	tig0018036:85258-85277	None:intergenic	30.0%
	ATAATATACCTCTTCTAGCA+TGG	-	tig0018036:85578-85597	None:intergenic	30.0%
!	ATGAGATTGGTGTCTTAATT+TGG	+	tig0018036:85727-85746	Msa1363270:intron	30.0%
	AAAAAGTTTCAATTGTCACG+GGG	-	tig0018036:85809-85828	None:intergenic	30.0%
	AGCACTATTGTAATCAAATG+AGG	+	tig0018036:85978-85997	Msa1363270:CDS	30.0%
!	AAGCTATGTCAAGACATTTT+AGG	+	tig0018036:86071-86090	Msa1363270:CDS	30.0%
!!	CATTTTAGGTGTTTGAAAGA+TGG	+	tig0018036:86085-86104	Msa1363270:CDS	30.0%
	TCAAACAACAAGAAAAGCAA+TGG	+	tig0018036:86123-86142	Msa1363270:CDS	30.0%
	CAAACAACAAGAAAAGCAAT+GGG	+	tig0018036:86124-86143	Msa1363270:CDS	30.0%
!!	CTATCAAGTATTTTAAGCCT+AGG	-	tig0018036:86193-86212	None:intergenic	30.0%
	CTTAACAAGTGATGAGTCAA+TGG	-	tig0018036:84492-84511	None:intergenic	35.0%
	GAAGATGACAAAACATCAAG+TGG	+	tig0018036:84759-84778	Msa1363270:five_prime_UTR	35.0%
	TGGATTTGTGTTTGAATCGT+TGG	-	tig0018036:84801-84820	None:intergenic	35.0%
	ACGATTCAAACACAAATCCA+AGG	+	tig0018036:84801-84820	Msa1363270:five_prime_UTR	35.0%
!!	ACAAATCCAAGGTTTTGTGT+CGG	+	tig0018036:84812-84831	Msa1363270:five_prime_UTR	35.0%
	GTAGTGAGATTAAACATCTC+TGG	-	tig0018036:84840-84859	None:intergenic	35.0%
	GAGATGTTTAATCTCACTAC+AGG	+	tig0018036:84840-84859	Msa1363270:five_prime_UTR	35.0%
!!	GGTTTTTGAAGAAGAAGAAG+AGG	-	tig0018036:84999-85018	None:intergenic	35.0%
	ATTCATCATCTTCACATCAG+TGG	+	tig0018036:85137-85156	Msa1363270:CDS	35.0%
	GTCTTTCATTACCTTCACAA+GGG	-	tig0018036:85198-85217	None:intergenic	35.0%
	GATTGTAAACCAATAGAGGA+AGG	-	tig0018036:85259-85278	None:intergenic	35.0%
!!	TTACAAGATCAAGGGTATCA+AGG	+	tig0018036:85310-85329	Msa1363270:CDS	35.0%
	AGTTCAACAACAAGCAAAGT+TGG	+	tig0018036:85452-85471	Msa1363270:CDS	35.0%
	GTTCAACAACAAGCAAAGTT+GGG	+	tig0018036:85453-85472	Msa1363270:CDS	35.0%
	TGGGAAGATGATAACAACAA+TGG	+	tig0018036:85472-85491	Msa1363270:CDS	35.0%
	GAAGATGATAACAACAATGG+TGG	+	tig0018036:85475-85494	Msa1363270:CDS	35.0%
	CAATTCAACAAACTCTACAG+AGG	-	tig0018036:85530-85549	None:intergenic	35.0%
!!	GTTGAAGTAGTTGATGAGAT+TGG	+	tig0018036:85714-85733	Msa1363270:intron	35.0%
	TTGTAATCAAATGAGGAGTG+TGG	+	tig0018036:85985-86004	Msa1363270:CDS	35.0%
	TGCGAAAGTTTATTCAGCTT+TGG	+	tig0018036:86042-86061	Msa1363270:CDS	35.0%
	AGAATAGAAACAGAACGTTC+AGG	-	tig0018036:86292-86311	None:intergenic	35.0%
!!	AACGTTCTGTTTCTATTCTC+AGG	+	tig0018036:86293-86312	Msa1363270:CDS	35.0%
!!	ACGTTCTGTTTCTATTCTCA+GGG	+	tig0018036:86294-86313	Msa1363270:CDS	35.0%
	CTTAACAAGTGATGAGTCAA+TGG	-	tig0018036:84492-84511	None:intergenic	35.0%
	GAAGATGACAAAACATCAAG+TGG	+	tig0018036:84759-84778	Msa1363270:five_prime_UTR	35.0%
	TGGATTTGTGTTTGAATCGT+TGG	-	tig0018036:84801-84820	None:intergenic	35.0%
	ACGATTCAAACACAAATCCA+AGG	+	tig0018036:84801-84820	Msa1363270:five_prime_UTR	35.0%
!!	ACAAATCCAAGGTTTTGTGT+CGG	+	tig0018036:84812-84831	Msa1363270:five_prime_UTR	35.0%
	GTAGTGAGATTAAACATCTC+TGG	-	tig0018036:84840-84859	None:intergenic	35.0%
	GAGATGTTTAATCTCACTAC+AGG	+	tig0018036:84840-84859	Msa1363270:five_prime_UTR	35.0%
!!	GGTTTTTGAAGAAGAAGAAG+AGG	-	tig0018036:84999-85018	None:intergenic	35.0%
	ATTCATCATCTTCACATCAG+TGG	+	tig0018036:85137-85156	Msa1363270:CDS	35.0%
	GTCTTTCATTACCTTCACAA+GGG	-	tig0018036:85198-85217	None:intergenic	35.0%
	GATTGTAAACCAATAGAGGA+AGG	-	tig0018036:85259-85278	None:intergenic	35.0%
!!	TTACAAGATCAAGGGTATCA+AGG	+	tig0018036:85310-85329	Msa1363270:CDS	35.0%
	AGTTCAACAACAAGCAAAGT+TGG	+	tig0018036:85452-85471	Msa1363270:CDS	35.0%
	GTTCAACAACAAGCAAAGTT+GGG	+	tig0018036:85453-85472	Msa1363270:CDS	35.0%
	TGGGAAGATGATAACAACAA+TGG	+	tig0018036:85472-85491	Msa1363270:CDS	35.0%
	GAAGATGATAACAACAATGG+TGG	+	tig0018036:85475-85494	Msa1363270:CDS	35.0%
	CAATTCAACAAACTCTACAG+AGG	-	tig0018036:85530-85549	None:intergenic	35.0%
!!	GTTGAAGTAGTTGATGAGAT+TGG	+	tig0018036:85714-85733	Msa1363270:intron	35.0%
	TTGTAATCAAATGAGGAGTG+TGG	+	tig0018036:85985-86004	Msa1363270:CDS	35.0%
	TGCGAAAGTTTATTCAGCTT+TGG	+	tig0018036:86042-86061	Msa1363270:CDS	35.0%
	AGAATAGAAACAGAACGTTC+AGG	-	tig0018036:86292-86311	None:intergenic	35.0%
!!	AACGTTCTGTTTCTATTCTC+AGG	+	tig0018036:86293-86312	Msa1363270:CDS	35.0%
!!	ACGTTCTGTTTCTATTCTCA+GGG	+	tig0018036:86294-86313	Msa1363270:CDS	35.0%
!	GAGAGTATATGATAGCATGG+AGG	+	tig0018036:84548-84567	Msa1363270:five_prime_UTR	40.0%
	GAAGATGAGATAGCTAGAGA+GGG	-	tig0018036:84586-84605	None:intergenic	40.0%
	AGAAGATGAGATAGCTAGAG+AGG	-	tig0018036:84587-84606	None:intergenic	40.0%
	GATGACAAAACATCAAGTGG+TGG	+	tig0018036:84762-84781	Msa1363270:five_prime_UTR	40.0%
	GTTTAATCTCACTACAGGGA+TGG	+	tig0018036:84845-84864	Msa1363270:five_prime_UTR	40.0%
	ACACAACAAACTCTGTCATG+TGG	+	tig0018036:84931-84950	Msa1363270:five_prime_UTR	40.0%
!	AGATGTGTTTTCCCTTGTGA+AGG	+	tig0018036:85184-85203	Msa1363270:CDS	40.0%
	GGTCTTTCATTACCTTCACA+AGG	-	tig0018036:85199-85218	None:intergenic	40.0%
	GGTAATGAAAGACCAAGTCA+AGG	+	tig0018036:85205-85224	Msa1363270:CDS	40.0%
	TCAACAAACCCTTCCTCTAT+TGG	+	tig0018036:85247-85266	Msa1363270:CDS	40.0%
	TCATTGAGAAGTTCTTGTGC+TGG	-	tig0018036:85370-85389	None:intergenic	40.0%
	ATACCTCTTCTAGCATGGAA+AGG	-	tig0018036:85573-85592	None:intergenic	40.0%
!	TCATCATTTGAAGCTGTAGC+TGG	+	tig0018036:86010-86029	Msa1363270:CDS	40.0%
!	TTTGAAGCTGTAGCTGGAAA+TGG	+	tig0018036:86016-86035	Msa1363270:CDS	40.0%
!	ACATGATGGAAACACATCCT+TGG	+	tig0018036:86248-86267	Msa1363270:CDS	40.0%
!	GAGAGTATATGATAGCATGG+AGG	+	tig0018036:84548-84567	Msa1363270:five_prime_UTR	40.0%
	GAAGATGAGATAGCTAGAGA+GGG	-	tig0018036:84586-84605	None:intergenic	40.0%
	AGAAGATGAGATAGCTAGAG+AGG	-	tig0018036:84587-84606	None:intergenic	40.0%
	GATGACAAAACATCAAGTGG+TGG	+	tig0018036:84762-84781	Msa1363270:five_prime_UTR	40.0%
	GTTTAATCTCACTACAGGGA+TGG	+	tig0018036:84845-84864	Msa1363270:five_prime_UTR	40.0%
	ACACAACAAACTCTGTCATG+TGG	+	tig0018036:84931-84950	Msa1363270:five_prime_UTR	40.0%
!	AGATGTGTTTTCCCTTGTGA+AGG	+	tig0018036:85184-85203	Msa1363270:CDS	40.0%
	GGTCTTTCATTACCTTCACA+AGG	-	tig0018036:85199-85218	None:intergenic	40.0%
	GGTAATGAAAGACCAAGTCA+AGG	+	tig0018036:85205-85224	Msa1363270:CDS	40.0%
	TCAACAAACCCTTCCTCTAT+TGG	+	tig0018036:85247-85266	Msa1363270:CDS	40.0%
	TCATTGAGAAGTTCTTGTGC+TGG	-	tig0018036:85370-85389	None:intergenic	40.0%
	ATACCTCTTCTAGCATGGAA+AGG	-	tig0018036:85573-85592	None:intergenic	40.0%
!	TCATCATTTGAAGCTGTAGC+TGG	+	tig0018036:86010-86029	Msa1363270:CDS	40.0%
!	TTTGAAGCTGTAGCTGGAAA+TGG	+	tig0018036:86016-86035	Msa1363270:CDS	40.0%
!	ACATGATGGAAACACATCCT+TGG	+	tig0018036:86248-86267	Msa1363270:CDS	40.0%
!	GGAGCATGAAAAGCATAGTG+TGG	-	tig0018036:84640-84659	None:intergenic	45.0%
	ACTACAGGGATGGAGATGAT+AGG	+	tig0018036:84855-84874	Msa1363270:five_prime_UTR	45.0%
	GAGAGTGAAAGTCCTTGACT+TGG	-	tig0018036:85220-85239	None:intergenic	45.0%
	TTTCAATTGTCACGGGGTGA+AGG	-	tig0018036:85803-85822	None:intergenic	45.0%
!	TTGTTGTTCCAGGTGCAACA+GGG	-	tig0018036:86159-86178	None:intergenic	45.0%
!!	TTTGTTGTTCCAGGTGCAAC+AGG	-	tig0018036:86160-86179	None:intergenic	45.0%
	TGTTGCACCTGGAACAACAA+AGG	+	tig0018036:86159-86178	Msa1363270:CDS	45.0%
	GTTGCACCTGGAACAACAAA+GGG	+	tig0018036:86160-86179	Msa1363270:CDS	45.0%
!!	GTTTCACCCTTTGTTGTTCC+AGG	-	tig0018036:86169-86188	None:intergenic	45.0%
	CAACAAAGGGTGAAACACCT+AGG	+	tig0018036:86173-86192	Msa1363270:CDS	45.0%
!!	CTGTTTCTATTCTCAGGGCT+TGG	+	tig0018036:86299-86318	Msa1363270:CDS	45.0%
!	GGAGCATGAAAAGCATAGTG+TGG	-	tig0018036:84640-84659	None:intergenic	45.0%
	ACTACAGGGATGGAGATGAT+AGG	+	tig0018036:84855-84874	Msa1363270:five_prime_UTR	45.0%
	GAGAGTGAAAGTCCTTGACT+TGG	-	tig0018036:85220-85239	None:intergenic	45.0%
	TTTCAATTGTCACGGGGTGA+AGG	-	tig0018036:85803-85822	None:intergenic	45.0%
!	TTGTTGTTCCAGGTGCAACA+GGG	-	tig0018036:86159-86178	None:intergenic	45.0%
!!	TTTGTTGTTCCAGGTGCAAC+AGG	-	tig0018036:86160-86179	None:intergenic	45.0%
	TGTTGCACCTGGAACAACAA+AGG	+	tig0018036:86159-86178	Msa1363270:CDS	45.0%
	GTTGCACCTGGAACAACAAA+GGG	+	tig0018036:86160-86179	Msa1363270:CDS	45.0%
!!	GTTTCACCCTTTGTTGTTCC+AGG	-	tig0018036:86169-86188	None:intergenic	45.0%
	CAACAAAGGGTGAAACACCT+AGG	+	tig0018036:86173-86192	Msa1363270:CDS	45.0%
!!	CTGTTTCTATTCTCAGGGCT+TGG	+	tig0018036:86299-86318	Msa1363270:CDS	45.0%
	CTGGATCCGACACAAAACCT+TGG	-	tig0018036:84821-84840	None:intergenic	50.0%
	GCTCCTTTCCATGCTAGAAG+AGG	+	tig0018036:85567-85586	Msa1363270:CDS	50.0%
	GAAAAAGACCCTGTTGCACC+TGG	+	tig0018036:86148-86167	Msa1363270:CDS	50.0%
	CTGGATCCGACACAAAACCT+TGG	-	tig0018036:84821-84840	None:intergenic	50.0%
	GCTCCTTTCCATGCTAGAAG+AGG	+	tig0018036:85567-85586	Msa1363270:CDS	50.0%
	GAAAAAGACCCTGTTGCACC+TGG	+	tig0018036:86148-86167	Msa1363270:CDS	50.0%
	CATCCTTGGAGACCTCAACG+TGG	+	tig0018036:86262-86281	Msa1363270:CDS	55.0%
	AGACCACGTTGAGGTCTCCA+AGG	-	tig0018036:86268-86287	None:intergenic	55.0%
	CGTTCAGGAAGACCACGTTG+AGG	-	tig0018036:86277-86296	None:intergenic	55.0%
	CATCCTTGGAGACCTCAACG+TGG	+	tig0018036:86262-86281	Msa1363270:CDS	55.0%
	AGACCACGTTGAGGTCTCCA+AGG	-	tig0018036:86268-86287	None:intergenic	55.0%
	CGTTCAGGAAGACCACGTTG+AGG	-	tig0018036:86277-86296	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
tig0018036	gene	84461	86348	84461	ID=Msa1363270;Name=Msa1363270
tig0018036	mRNA	84461	86348	84461	ID=Msa1363270-mRNA-1;Parent=Msa1363270;Name=Msa1363270-mRNA-1;_AED=0.27;_eAED=0.27;_QI=558\|1\|0.5\|1\|1\|1\|2\|0\|318
tig0018036	exon	84461	85588	84461	ID=Msa1363270-mRNA-1:exon:13458;Parent=Msa1363270-mRNA-1
tig0018036	exon	85962	86348	85962	ID=Msa1363270-mRNA-1:exon:13459;Parent=Msa1363270-mRNA-1
tig0018036	five_prime_UTR	84461	85018	84461	ID=Msa1363270-mRNA-1:five_prime_utr;Parent=Msa1363270-mRNA-1
tig0018036	CDS	85019	85588	85019	ID=Msa1363270-mRNA-1:cds;Parent=Msa1363270-mRNA-1
tig0018036	CDS	85962	86348	85962	ID=Msa1363270-mRNA-1:cds;Parent=Msa1363270-mRNA-1

Gene Sequence

>Msa1363270

ATGAATGAAAATTTCTATCATCACCAACAACAACATCAAGATTTCACTGTTTCTGATACAACAAGTAGTGATCAGAATCTAAACAACATGGTTCATCATCATCATCATCAACAACATGATTCATCATCTTCACATCAGTGGCAACAAGTTGATGATTCATCTTTAAGATGTGTTTTCCCTTGTGAAGGTAATGAAAGACCAAGTCAAGGACTTTCACTCTCTCTTAGTTCAACAAACCCTTCCTCTATTGGTTTACAATCTTTTGAACTAAGACACACTACTAATCATCATTTACAAGATCAAGGGTATCAAGGTCATTTTCTTCTCAAAAACTCTAAGTTCTTACTTCCAGCACAAGAACTTCTCAATGAGTTTTGTAGTTTAGAAAGTACAAAGCAAAATGATTTAGTTTTACAAAAGCAAAAATCTCAAAAGTTCAACAACAAGCAAAGTTGGGAAGATGATAACAACAATGGTGGTAGCAGTTCTTCAATCAAACAATCTTTAACCTCTGTAGAGTTTGTTGAATTGCAGAAGAGAAAAACTAAGCTCCTTTCCATGCTAGAAGAGGTTGATAGAAGGTACAAGCACTATTGTAATCAAATGAGGAGTGTGGTTTCATCATTTGAAGCTGTAGCTGGAAATGGAGCTGCGAAAGTTTATTCAGCTTTGGCTTTAAAAGCTATGTCAAGACATTTTAGGTGTTTGAAAGATGGGATTTTAGAACAAATTCAAACAACAAGAAAAGCAATGGGAGAAAAAGACCCTGTTGCACCTGGAACAACAAAGGGTGAAACACCTAGGCTTAAAATACTTGATAGAGTTTTGAGACAACAAAGAGCATTTCAACAAATCAACATGATGGAAACACATCCTTGGAGACCTCAACGTGGTCTTCCTGAACGTTCTGTTTCTATTCTCAGGGCTTGGCTTTTTGAACACTTTCTTCATCCGTAA

Protein sequence

>Msa1363270

MNENFYHHQQQHQDFTVSDTTSSDQNLNNMVHHHHHQQHDSSSSHQWQQVDDSSLRCVFPCEGNERPSQGLSLSLSSTNPSSIGLQSFELRHTTNHHLQDQGYQGHFLLKNSKFLLPAQELLNEFCSLESTKQNDLVLQKQKSQKFNNKQSWEDDNNNGGSSSSIKQSLTSVEFVELQKRKTKLLSMLEEVDRRYKHYCNQMRSVVSSFEAVAGNGAAKVYSALALKAMSRHFRCLKDGILEQIQTTRKAMGEKDPVAPGTTKGETPRLKILDRVLRQQRAFQQINMMETHPWRPQRGLPERSVSILRAWLFEHFLHP*