Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0661880 | XP_003618920.2 | 99.545 | 220 | 1 | 0 | 13 | 232 | 1 | 220 | 9.05e-158 | 465 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0661880 | sp|Q8GUP1|CTF77_ARATH | 75.909 | 220 | 53 | 0 | 13 | 232 | 1 | 220 | 6.39e-123 | 369 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0661880 | G7KP74 | 99.545 | 220 | 1 | 0 | 13 | 232 | 1 | 220 | 4.32e-158 | 465 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0661880 | Msa0893810 | 0.800240 | 1.581578e-48 | -8.615850e-47 |
| Msa0661880 | Msa0908050 | 0.805653 | 1.203269e-49 | -8.615850e-47 |
| Msa0249100 | Msa0661880 | 0.805508 | 1.290418e-49 | -8.615850e-47 |
| Msa0318880 | Msa0661880 | 0.800273 | 1.557214e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0661880 | MtrunA17_Chr6g0460371 | 99.545 | 220 | 1 | 0 | 13 | 232 | 1 | 220 | 8.32e-162 | 465 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0661880 | AT1G17760.1 | 75.909 | 220 | 53 | 0 | 13 | 232 | 1 | 220 | 6.50e-124 | 369 |
Find 54 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCCTCGCAGAATTATATTT+TGG | 0.208141 | 4_3:+73498412 | None:intergenic |
| TTCTGTTCCTCTGCAAATAT+TGG | 0.273437 | 4_3:-73498304 | Msa0661880:CDS |
| CTGTTTGTTGAATTGTCTTC+AGG | 0.282381 | 4_3:-73500760 | Msa0661880:CDS |
| TCCGATGTGTTTCTTCTTGT+GGG | 0.336415 | 4_3:+73498661 | None:intergenic |
| CACGAAATATTACCAACTTC+TGG | 0.351260 | 4_3:+73498538 | None:intergenic |
| CACATCACATTGAACAACTT+TGG | 0.356399 | 4_3:-73498593 | Msa0661880:CDS |
| TTGCTTGTAGAACAGAGATT+TGG | 0.370500 | 4_3:+73502409 | None:intergenic |
| CACATACTGCTTCCAAAACT+TGG | 0.383591 | 4_3:+73500836 | None:intergenic |
| TGCAGAAGCTGCTCGTATAT+TGG | 0.384141 | 4_3:+73501027 | None:intergenic |
| ATGCTTGCTGTGCCACCAAC+TGG | 0.391412 | 4_3:-73498343 | Msa0661880:CDS |
| AGCCTTTCTAAAGTCATTGC+CGG | 0.398907 | 4_3:-73498783 | Msa0661880:intron |
| TTACATTCGTTTCATTAGAA+AGG | 0.412653 | 4_3:-73499884 | Msa0661880:CDS |
| GGAACAGAAACTTGCCTTGT+GGG | 0.433734 | 4_3:+73498318 | None:intergenic |
| ATCCGATGTGTTTCTTCTTG+TGG | 0.442316 | 4_3:+73498660 | None:intergenic |
| AGTAGTTCTTTACGAAGAAC+AGG | 0.444590 | 4_3:-73502449 | Msa0661880:five_prime_UTR |
| ACAATAACACTTACAGCTGT+TGG | 0.450659 | 4_3:+73500997 | None:intergenic |
| TAGAAAGGTTAATGATAAGA+AGG | 0.454228 | 4_3:-73499869 | Msa0661880:CDS |
| ATTGTCTTCAGGTTCCTCTC+TGG | 0.459355 | 4_3:-73500749 | Msa0661880:intron |
| GAATTTATGCTCAGCTATGT+TGG | 0.465240 | 4_3:-73499811 | Msa0661880:intron |
| TTTGTGTCCAGGCCAAGTTT+TGG | 0.467649 | 4_3:-73500848 | Msa0661880:intron |
| TGTCGAATCCGCTGAAAAGT+TGG | 0.474247 | 4_3:-73502201 | Msa0661880:CDS |
| AGCATCAGGCCCTGTGTGGA+TGG | 0.495690 | 4_3:-73498813 | Msa0661880:CDS |
| AAAGTTGGCTAATGAAGCTC+AGG | 0.515124 | 4_3:-73502186 | Msa0661880:intron |
| AGAAAGGTTAATGATAAGAA+GGG | 0.532915 | 4_3:-73499868 | Msa0661880:CDS |
| ACAGGATCAGACATAGCATC+AGG | 0.533541 | 4_3:-73498827 | Msa0661880:intron |
| GCCTTGTGGGATCCAGTTGG+TGG | 0.533793 | 4_3:+73498331 | None:intergenic |
| AACCGGCAATGACTTTAGAA+AGG | 0.541989 | 4_3:+73498781 | None:intergenic |
| AAGTTCTGTTAGCCAGAAGT+TGG | 0.544913 | 4_3:-73498550 | Msa0661880:intron |
| TAGGAGTAATAATAGCCCTC+TGG | 0.557030 | 4_3:+73498616 | None:intergenic |
| GCAGTATGTGGAGGCACACA+TGG | 0.560072 | 4_3:-73500823 | Msa0661880:CDS |
| TCGTTGCCTCTCAAACGTAA+TGG | 0.571895 | 4_3:-73502370 | Msa0661880:intron |
| ATTATACCATTACGTTTGAG+AGG | 0.578453 | 4_3:+73502364 | None:intergenic |
| GAAAGGTTAATGATAAGAAG+GGG | 0.579902 | 4_3:-73499867 | Msa0661880:CDS |
| CGAGGGCAGTATACAGAGAA+CGG | 0.583868 | 4_3:-73498396 | Msa0661880:CDS |
| CTTGCCTTGTGGGATCCAGT+TGG | 0.610843 | 4_3:+73498328 | None:intergenic |
| GCTATGTACTCCATCCACAC+AGG | 0.627247 | 4_3:+73498803 | None:intergenic |
| AAGCTGCTCGTATATTGGTG+TGG | 0.629883 | 4_3:+73501032 | None:intergenic |
| ACCAAAATATAATTCTGCGA+GGG | 0.630124 | 4_3:-73498413 | Msa0661880:CDS |
| AGTTGTTCAATGTGATGTGT+AGG | 0.630764 | 4_3:+73498597 | None:intergenic |
| AACCAAAATATAATTCTGCG+AGG | 0.632273 | 4_3:-73498414 | Msa0661880:CDS |
| AAAGGTTAATGATAAGAAGG+GGG | 0.633601 | 4_3:-73499866 | Msa0661880:CDS |
| CTATGTACTCCATCCACACA+GGG | 0.637483 | 4_3:+73498804 | None:intergenic |
| GCCACCAACTGGATCCCACA+AGG | 0.639399 | 4_3:-73498332 | Msa0661880:CDS |
| AACGATACCAATATTTGCAG+AGG | 0.642896 | 4_3:+73498297 | None:intergenic |
| ACATAGCATCAGGCCCTGTG+TGG | 0.645875 | 4_3:-73498817 | Msa0661880:CDS |
| TTGTGAGGAAAGTCTACCAG+AGG | 0.655102 | 4_3:-73498632 | Msa0661880:CDS |
| AGGAACAGAAACTTGCCTTG+TGG | 0.668862 | 4_3:+73498317 | None:intergenic |
| TGTGGCTTCTGCAATAGACA+AGG | 0.679624 | 4_3:+73501050 | None:intergenic |
| CACATCGGATGACTGTTGTG+AGG | 0.682292 | 4_3:-73498647 | Msa0661880:CDS |
| TGGTACTGAAAAGAAAACAA+TGG | 0.692247 | 4_3:-73502237 | Msa0661880:CDS |
| TGTGAGGAAAGTCTACCAGA+GGG | 0.698856 | 4_3:-73498631 | Msa0661880:CDS |
| AAGAGAACAACGTACCAGAG+AGG | 0.701521 | 4_3:+73500735 | None:intergenic |
| GAAGACAATTCAACAAACAG+CGG | 0.704193 | 4_3:+73500763 | None:intergenic |
| ACCCACAAGAAGAAACACAT+CGG | 0.717171 | 4_3:-73498662 | Msa0661880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTTTTTAATGTTTTTT+AGG | - | chr4_3:73498471-73498490 | Msa0661880:intron | 10.0% |
| !! | AAAAAAAAAAATCAAAACTT+TGG | + | chr4_3:73498598-73498617 | None:intergenic | 10.0% |
| !! | TATTAATAAAAGAAACAAAA+GGG | + | chr4_3:73498650-73498669 | None:intergenic | 10.0% |
| !! | TTATTAATAAAAGAAACAAA+AGG | + | chr4_3:73498651-73498670 | None:intergenic | 10.0% |
| !!! | TTTTTTTCTTCATATAATTA+TGG | - | chr4_3:73500736-73500755 | Msa0661880:intron | 10.0% |
| !!! | TTTTTATATGTTATTTGATT+GGG | - | chr4_3:73501713-73501732 | Msa0661880:intron | 10.0% |
| !! | TATTAATAATTCATGTTTGT+TGG | - | chr4_3:73498662-73498681 | Msa0661880:CDS | 15.0% |
| !!! | TAAATTATTTTAGTATAAGC+TGG | - | chr4_3:73498861-73498880 | Msa0661880:intron | 15.0% |
| !! | CAATCAAATAACATATAAAA+AGG | + | chr4_3:73501714-73501733 | None:intergenic | 15.0% |
| !!! | CTTTTTATATGTTATTTGAT+TGG | - | chr4_3:73501712-73501731 | Msa0661880:intron | 15.0% |
| !!! | TTTTATATGTTATTTGATTG+GGG | - | chr4_3:73501714-73501733 | Msa0661880:intron | 15.0% |
| !!! | ATTATATTTTGGTTGATATT+CGG | + | chr4_3:73502324-73502343 | None:intergenic | 15.0% |
| !!! | AATGTTTTTTAGGATAAAAC+CGG | - | chr4_3:73498481-73498500 | Msa0661880:intron | 20.0% |
| !! | TAACAACACTTGTATATATA+GGG | + | chr4_3:73499030-73499049 | None:intergenic | 20.0% |
| !! | TTAACAACACTTGTATATAT+AGG | + | chr4_3:73499031-73499050 | None:intergenic | 20.0% |
| !!! | AAGTTTTAACTTTTTGTAGA+GGG | - | chr4_3:73499145-73499164 | Msa0661880:intron | 20.0% |
| !! | ACAACACTAATATATAATAC+AGG | + | chr4_3:73499176-73499195 | None:intergenic | 20.0% |
| !! | TATAAAATGTTCTCAAATTG+CGG | - | chr4_3:73499369-73499388 | Msa0661880:intron | 20.0% |
| !! | AATGAGCAATATAAACAAAA+GGG | + | chr4_3:73499523-73499542 | None:intergenic | 20.0% |
| !!! | GATTTTTTATGATGCTTATT+TGG | - | chr4_3:73499872-73499891 | Msa0661880:CDS | 20.0% |
| !! | TTGTTCTCTTAATCTTATTA+TGG | - | chr4_3:73500022-73500041 | Msa0661880:intron | 20.0% |
| !! | TTGGTATATTAAAGTTAAGT+TGG | - | chr4_3:73500536-73500555 | Msa0661880:intron | 20.0% |
| !! | ATCTTCTAATGATAACATTT+GGG | + | chr4_3:73500567-73500586 | None:intergenic | 20.0% |
| !!! | TTGAAAGATATTTGGTTTTT+CGG | - | chr4_3:73500588-73500607 | Msa0661880:intron | 20.0% |
| !! | AAATAAAACATTATGTAGAC+AGG | + | chr4_3:73500702-73500721 | None:intergenic | 20.0% |
| !!! | TGTCTACATAATGTTTTATT+TGG | - | chr4_3:73500701-73500720 | Msa0661880:intron | 20.0% |
| !! | GAAAAATTCTCCTAAAAAAA+CGG | + | chr4_3:73501663-73501682 | None:intergenic | 20.0% |
| !!! | GTATCACTTTTCAAAATTTT+GGG | - | chr4_3:73502036-73502055 | Msa0661880:intron | 20.0% |
| !!! | AAAATCAAAACTTTGGAACT+GGG | + | chr4_3:73498591-73498610 | None:intergenic | 25.0% |
| !!! | AAAAATCAAAACTTTGGAAC+TGG | + | chr4_3:73498592-73498611 | None:intergenic | 25.0% |
| ! | GAGCTTATAGTTATACATAA+GGG | + | chr4_3:73498737-73498756 | None:intergenic | 25.0% |
| ! | AGAGCTTATAGTTATACATA+AGG | + | chr4_3:73498738-73498757 | None:intergenic | 25.0% |
| ! | ATAAGTTGTTTATCCAAACA+GGG | + | chr4_3:73498788-73498807 | None:intergenic | 25.0% |
| ! | AACAACACTTGTATATATAG+GGG | + | chr4_3:73499029-73499048 | None:intergenic | 25.0% |
| !! | ATACAAGTGTTGTTAAATAG+TGG | - | chr4_3:73499035-73499054 | Msa0661880:intron | 25.0% |
| ! | AAAAGTTAAAACTTGGAAAC+CGG | + | chr4_3:73499139-73499158 | None:intergenic | 25.0% |
| ! | CTCTACAAAAAGTTAAAACT+TGG | + | chr4_3:73499146-73499165 | None:intergenic | 25.0% |
| !!! | CAAGTTTTAACTTTTTGTAG+AGG | - | chr4_3:73499144-73499163 | Msa0661880:intron | 25.0% |
| !!! | AGTTTTAACTTTTTGTAGAG+GGG | - | chr4_3:73499146-73499165 | Msa0661880:intron | 25.0% |
| ! | CAATGAGCAATATAAACAAA+AGG | + | chr4_3:73499524-73499543 | None:intergenic | 25.0% |
| ! | TCTTAATCTTATTATGGCAA+TGG | - | chr4_3:73500028-73500047 | Msa0661880:intron | 25.0% |
| ! | TTCAAACAACAAAACCAAAA+GGG | + | chr4_3:73500077-73500096 | None:intergenic | 25.0% |
| ! | TTTCAAACAACAAAACCAAA+AGG | + | chr4_3:73500078-73500097 | None:intergenic | 25.0% |
| !!! | TTTTGGTTTTGTTGTTTGAA+AGG | - | chr4_3:73500077-73500096 | Msa0661880:intron | 25.0% |
| !!! | TTTTGTTGTTTGAAAGGTTT+TGG | - | chr4_3:73500083-73500102 | Msa0661880:intron | 25.0% |
| !! | GTCTATTTCTTGTGTATTTA+AGG | - | chr4_3:73500154-73500173 | Msa0661880:intron | 25.0% |
| !! | AGACTATTTCTTATTAGCAT+AGG | + | chr4_3:73500180-73500199 | None:intergenic | 25.0% |
| ! | AAATTGTTAATTTCTGCGAT+AGG | - | chr4_3:73500437-73500456 | Msa0661880:intron | 25.0% |
| !! | GACAATAAGTTTACTCATTT+TGG | + | chr4_3:73500513-73500532 | None:intergenic | 25.0% |
| ! | GAGTAAACTTATTGTCAATT+TGG | - | chr4_3:73500517-73500536 | Msa0661880:intron | 25.0% |
| ! | TCTTCTAATGATAACATTTG+GGG | + | chr4_3:73500566-73500585 | None:intergenic | 25.0% |
| ! | GATCTTCTAATGATAACATT+TGG | + | chr4_3:73500568-73500587 | None:intergenic | 25.0% |
| ! | AGAAGATCTTGAAAGATATT+TGG | - | chr4_3:73500580-73500599 | Msa0661880:intron | 25.0% |
| ! | TTACATTCGTTTCATTAGAA+AGG | - | chr4_3:73500860-73500879 | Msa0661880:intron | 25.0% |
| ! | TAGAAAGGTTAATGATAAGA+AGG | - | chr4_3:73500875-73500894 | Msa0661880:intron | 25.0% |
| ! | AGAAAGGTTAATGATAAGAA+GGG | - | chr4_3:73500876-73500895 | Msa0661880:intron | 25.0% |
| ! | AACTGAAATACACAACTAAT+AGG | + | chr4_3:73500977-73500996 | None:intergenic | 25.0% |
| !!! | GGTATCACTTTTCAAAATTT+TGG | - | chr4_3:73502035-73502054 | Msa0661880:intron | 25.0% |
| ! | TGATTCTGTAGTTTCTATTA+AGG | - | chr4_3:73502252-73502271 | Msa0661880:CDS | 25.0% |
| !!! | AGTTTTTCGATGAAATTGAT+TGG | - | chr4_3:73502375-73502394 | Msa0661880:five_prime_UTR | 25.0% |
| ATTATACCATTACGTTTGAG+AGG | + | chr4_3:73498383-73498402 | None:intergenic | 30.0% | |
| CGTAATGGTATAATTGTTCT+TGG | - | chr4_3:73498389-73498408 | Msa0661880:CDS | 30.0% | |
| ! | TGGTACTGAAAAGAAAACAA+TGG | - | chr4_3:73498507-73498526 | Msa0661880:intron | 30.0% |
| GATAAGTTGTTTATCCAAAC+AGG | + | chr4_3:73498789-73498808 | None:intergenic | 30.0% | |
| ! | TGTATATATAGGGGTATGTT+TGG | + | chr4_3:73499020-73499039 | None:intergenic | 30.0% |
| AAAGTTAAAACTTGGAAACC+GGG | + | chr4_3:73499138-73499157 | None:intergenic | 30.0% | |
| ATATTAGTGTTGTCGAATTG+TGG | - | chr4_3:73499183-73499202 | Msa0661880:intron | 30.0% | |
| AATATAAGACTATAGTGCAG+TGG | - | chr4_3:73499207-73499226 | Msa0661880:intron | 30.0% | |
| TACAACTCGTTGTCAAATAA+TGG | - | chr4_3:73499270-73499289 | Msa0661880:intron | 30.0% | |
| TTGTCAAATAATGGCTATGT+CGG | - | chr4_3:73499279-73499298 | Msa0661880:intron | 30.0% | |
| !! | TTAGCATTTGTTTTTCACAG+TGG | - | chr4_3:73499562-73499581 | Msa0661880:intron | 30.0% |
| GGGTCAAAGAATTACATATT+TGG | + | chr4_3:73499625-73499644 | None:intergenic | 30.0% | |
| CAATGAGCAAAATGAACAAA+GGG | + | chr4_3:73499645-73499664 | None:intergenic | 30.0% | |
| TCAATGAGCAAAATGAACAA+AGG | + | chr4_3:73499646-73499665 | None:intergenic | 30.0% | |
| !! | TTGTTTCTCTGTTGTTGTTT+AGG | - | chr4_3:73499671-73499690 | Msa0661880:intron | 30.0% |
| ! | TAGTTTCTTTTACTCCCTTT+TGG | - | chr4_3:73500060-73500079 | Msa0661880:intron | 30.0% |
| AATAGTCTATGCTTTACTGT+TGG | - | chr4_3:73500192-73500211 | Msa0661880:intron | 30.0% | |
| CTTATATTTACAACTGCAGT+AGG | + | chr4_3:73500479-73500498 | None:intergenic | 30.0% | |
| !!! | TTTACTCATTTTGGTTGAAC+AGG | + | chr4_3:73500504-73500523 | None:intergenic | 30.0% |
| !!! | AGTTGTTTCTTTCTTTTTCC+TGG | - | chr4_3:73500637-73500656 | Msa0661880:intron | 30.0% |
| ATTATGTAGACAGGAGAATA+TGG | + | chr4_3:73500693-73500712 | None:intergenic | 30.0% | |
| !!! | CAACTTGTGTTTTTTTCTTC+TGG | - | chr4_3:73500824-73500843 | Msa0661880:CDS | 30.0% |
| !!! | GTTTTTTTCTTCTGGCTTAT+AGG | - | chr4_3:73500832-73500851 | Msa0661880:CDS | 30.0% |
| GAAAGGTTAATGATAAGAAG+GGG | - | chr4_3:73500877-73500896 | Msa0661880:intron | 30.0% | |
| AAAGGTTAATGATAAGAAGG+GGG | - | chr4_3:73500878-73500897 | Msa0661880:intron | 30.0% | |
| ATACACAACTAATAGGACAA+TGG | + | chr4_3:73500970-73500989 | None:intergenic | 30.0% | |
| AAAGCTTAAAAATGCAAAGG+CGG | + | chr4_3:73501225-73501244 | None:intergenic | 30.0% | |
| CTCAAAGCTTAAAAATGCAA+AGG | + | chr4_3:73501228-73501247 | None:intergenic | 30.0% | |
| TCTAAAAATAAGAGCCTCTT+GGG | + | chr4_3:73501251-73501270 | None:intergenic | 30.0% | |
| ATCTAAAAATAAGAGCCTCT+TGG | + | chr4_3:73501252-73501271 | None:intergenic | 30.0% | |
| TACTTAAATAAGAGCCTCTT+GGG | + | chr4_3:73501304-73501323 | None:intergenic | 30.0% | |
| ATACTTAAATAAGAGCCTCT+TGG | + | chr4_3:73501305-73501324 | None:intergenic | 30.0% | |
| ! | ATTCCAAAAAATTTTGCCGT+TGG | + | chr4_3:73501353-73501372 | None:intergenic | 30.0% |
| AATGCTGTTCTTGAATGTAT+TGG | - | chr4_3:73501440-73501459 | Msa0661880:intron | 30.0% | |
| TCATTCAATAGGACTCTAAA+AGG | + | chr4_3:73501510-73501529 | None:intergenic | 30.0% | |
| !!! | TTTTAGAGTCCTATTGAATG+AGG | - | chr4_3:73501509-73501528 | Msa0661880:intron | 30.0% |
| GAGATAGATTGAAGTAAAAC+CGG | - | chr4_3:73501564-73501583 | Msa0661880:intron | 30.0% | |
| !!! | GAAACTGATTCCGTTTTTTT+AGG | - | chr4_3:73501650-73501669 | Msa0661880:intron | 30.0% |
| CACACAAAAGATTAACTAAC+CGG | + | chr4_3:73501983-73502002 | None:intergenic | 30.0% | |
| GTTATGCAATTCTCATTTCT+TGG | - | chr4_3:73502002-73502021 | Msa0661880:intron | 30.0% | |
| ! | TCATTTCTTGGTGCATAATT+TGG | - | chr4_3:73502014-73502033 | Msa0661880:intron | 30.0% |
| ACACCTTATCATCAAAATGT+AGG | + | chr4_3:73502278-73502297 | None:intergenic | 30.0% | |
| AACCAAAATATAATTCTGCG+AGG | - | chr4_3:73502330-73502349 | Msa0661880:intron | 30.0% | |
| ACCAAAATATAATTCTGCGA+GGG | - | chr4_3:73502331-73502350 | Msa0661880:intron | 30.0% | |
| AGTAGTTCTTTACGAAGAAC+AGG | - | chr4_3:73498295-73498314 | Msa0661880:CDS | 35.0% | |
| TTGCTTGTAGAACAGAGATT+TGG | + | chr4_3:73498338-73498357 | None:intergenic | 35.0% | |
| !!! | GTTTTTTAGGATAAAACCGG+TGG | - | chr4_3:73498484-73498503 | Msa0661880:intron | 35.0% |
| ! | TTCATTAGCCAACTTTTCAG+CGG | + | chr4_3:73498554-73498573 | None:intergenic | 35.0% |
| AAGCTCTTTGTCTATTGTTG+AGG | - | chr4_3:73498751-73498770 | Msa0661880:intron | 35.0% | |
| ! | ATATAGGGGTATGTTTGGAT+TGG | + | chr4_3:73499015-73499034 | None:intergenic | 35.0% |
| TACAACGTGTTGTCAAATAG+CGG | - | chr4_3:73499096-73499115 | Msa0661880:intron | 35.0% | |
| GTGTATGCACAAAACAATAG+CGG | + | chr4_3:73499342-73499361 | None:intergenic | 35.0% | |
| TCAAATTGCGGTAATAGTAG+CGG | - | chr4_3:73499381-73499400 | Msa0661880:intron | 35.0% | |
| AATATCAGTGTTGTCATTCG+CGG | + | chr4_3:73499450-73499469 | None:intergenic | 35.0% | |
| ACAATAACACTTACAGCTGT+TGG | + | chr4_3:73499750-73499769 | None:intergenic | 35.0% | |
| ! | CAGCTGTAAGTGTTATTGTT+CGG | - | chr4_3:73499751-73499770 | Msa0661880:intron | 35.0% |
| ! | ACTACTTCTGTGAGTGATTT+TGG | - | chr4_3:73499827-73499846 | Msa0661880:CDS | 35.0% |
| TTTGGAAGGCTCTACTATTA+TGG | - | chr4_3:73499845-73499864 | Msa0661880:CDS | 35.0% | |
| GAAGACAATTCAACAAACAG+CGG | + | chr4_3:73499984-73500003 | None:intergenic | 35.0% | |
| ! | CTGTTTGTTGAATTGTCTTC+AGG | - | chr4_3:73499984-73500003 | Msa0661880:intron | 35.0% |
| CGTAGTAGATCTATCTAACA+TGG | - | chr4_3:73500235-73500254 | Msa0661880:intron | 35.0% | |
| TAACATGGAAACTTCCTCTA+GGG | - | chr4_3:73500250-73500269 | Msa0661880:intron | 35.0% | |
| ! | AGAGGTTTATGATGGAATCA+TGG | - | chr4_3:73500283-73500302 | Msa0661880:intron | 35.0% |
| CTAATGATAACATTTGGGGA+AGG | + | chr4_3:73500562-73500581 | None:intergenic | 35.0% | |
| CAAACAATAGAAATTCTGCC+AGG | + | chr4_3:73500658-73500677 | None:intergenic | 35.0% | |
| ACAAGACAGAACTAATAAGC+AGG | + | chr4_3:73500770-73500789 | None:intergenic | 35.0% | |
| !! | TGCTTATTAGTTCTGTCTTG+TGG | - | chr4_3:73500769-73500788 | Msa0661880:CDS | 35.0% |
| !!! | TTTTTCTTCTGGCTTATAGG+CGG | - | chr4_3:73500835-73500854 | Msa0661880:CDS | 35.0% |
| GAATTTATGCTCAGCTATGT+TGG | - | chr4_3:73500933-73500952 | Msa0661880:intron | 35.0% | |
| AATTGTTGTAGCACCTAAGT+GGG | - | chr4_3:73501004-73501023 | Msa0661880:intron | 35.0% | |
| ! | CTAATAGAGTCTTTTGTGAG+AGG | - | chr4_3:73501048-73501067 | Msa0661880:CDS | 35.0% |
| TAAACAGTCTCTACTGTAGA+AGG | - | chr4_3:73501103-73501122 | Msa0661880:intron | 35.0% | |
| AAACAGTCTCTACTGTAGAA+GGG | - | chr4_3:73501104-73501123 | Msa0661880:intron | 35.0% | |
| TAGTTAGTTCATGATAGAGC+CGG | - | chr4_3:73501372-73501391 | Msa0661880:intron | 35.0% | |
| !! | TTCAGTAAAAAGGCGCTAAA+GGG | + | chr4_3:73501479-73501498 | None:intergenic | 35.0% |
| !! | ATTCAGTAAAAAGGCGCTAA+AGG | + | chr4_3:73501480-73501499 | None:intergenic | 35.0% |
| GGACTCTACATTCAGTAAAA+AGG | + | chr4_3:73501489-73501508 | None:intergenic | 35.0% | |
| AAGTAAAACCGGTCTGATTT+AGG | - | chr4_3:73501575-73501594 | Msa0661880:intron | 35.0% | |
| TTTGCGCTTCTTAGTTTATG+CGG | - | chr4_3:73501817-73501836 | Msa0661880:intron | 35.0% | |
| ! | TTTTCCAATGATGTGCTAAC+AGG | - | chr4_3:73501899-73501918 | Msa0661880:intron | 35.0% |
| AGTTGTTCAATGTGATGTGT+AGG | + | chr4_3:73502150-73502169 | None:intergenic | 35.0% | |
| CACATCACATTGAACAACTT+TGG | - | chr4_3:73502151-73502170 | Msa0661880:intron | 35.0% | |
| CACGAAATATTACCAACTTC+TGG | + | chr4_3:73502209-73502228 | None:intergenic | 35.0% | |
| !! | AGGCCTACATTTTGATGATA+AGG | - | chr4_3:73502272-73502291 | Msa0661880:intron | 35.0% |
| !! | TTGATGATAAGGTGTTTTGC+AGG | - | chr4_3:73502283-73502302 | Msa0661880:intron | 35.0% |
| TTCTGTTCCTCTGCAAATAT+TGG | - | chr4_3:73502440-73502459 | Msa0661880:five_prime_UTR | 35.0% | |
| AACGATACCAATATTTGCAG+AGG | + | chr4_3:73502450-73502469 | None:intergenic | 35.0% | |
| !!! | TTTTAGGATAAAACCGGTGG+TGG | - | chr4_3:73498487-73498506 | Msa0661880:intron | 40.0% |
| ! | TTTCTTTTCAGTACCACCAC+CGG | + | chr4_3:73498503-73498522 | None:intergenic | 40.0% |
| AAAGTTGGCTAATGAAGCTC+AGG | - | chr4_3:73498558-73498577 | Msa0661880:CDS | 40.0% | |
| GGTCAAACTTAAACCCTGTT+TGG | - | chr4_3:73498772-73498791 | Msa0661880:intron | 40.0% | |
| TGTCAAATAGCGGCTATAGT+AGG | - | chr4_3:73499106-73499125 | Msa0661880:intron | 40.0% | |
| ACAGAAGCTGCTAGTACATA+CGG | + | chr4_3:73499594-73499613 | None:intergenic | 40.0% | |
| ! | CTTCTGTGAGTGATTTTGGA+AGG | - | chr4_3:73499831-73499850 | Msa0661880:CDS | 40.0% |
| GCTTATTTGGATTTGTGTCC+AGG | - | chr4_3:73499885-73499904 | Msa0661880:CDS | 40.0% | |
| CACATACTGCTTCCAAAACT+TGG | + | chr4_3:73499911-73499930 | None:intergenic | 40.0% | |
| !!! | CAAGTTTTGGAAGCAGTATG+TGG | - | chr4_3:73499909-73499928 | Msa0661880:intron | 40.0% |
| GTCTATGCTTTACTGTTGGT+CGG | - | chr4_3:73500196-73500215 | Msa0661880:intron | 40.0% | |
| CTAACATGGAAACTTCCTCT+AGG | - | chr4_3:73500249-73500268 | Msa0661880:intron | 40.0% | |
| AACATGGAAACTTCCTCTAG+GGG | - | chr4_3:73500251-73500270 | Msa0661880:intron | 40.0% | |
| AGTATAACGCGTTGTCATAG+CGG | - | chr4_3:73500381-73500400 | Msa0661880:intron | 40.0% | |
| GAATTGTTGTAGCACCTAAG+TGG | - | chr4_3:73501003-73501022 | Msa0661880:intron | 40.0% | |
| TTTGTGAGAGGAAGAGTTCT+TGG | - | chr4_3:73501060-73501079 | Msa0661880:intron | 40.0% | |
| TTGTGAGAGGAAGAGTTCTT+GGG | - | chr4_3:73501061-73501080 | Msa0661880:intron | 40.0% | |
| AACAGTCTCTACTGTAGAAG+GGG | - | chr4_3:73501105-73501124 | Msa0661880:intron | 40.0% | |
| !!! | TTTTAAGCTTTGAGCCCAAG+AGG | - | chr4_3:73501234-73501253 | Msa0661880:intron | 40.0% |
| AACCATTGATGTTCCACCAA+CGG | - | chr4_3:73501334-73501353 | Msa0661880:intron | 40.0% | |
| ! | CCAAAAAATTTTGCCGTTGG+TGG | + | chr4_3:73501350-73501369 | None:intergenic | 40.0% |
| !!! | CCACCAACGGCAAAATTTTT+TGG | - | chr4_3:73501347-73501366 | Msa0661880:intron | 40.0% |
| TTGACTGCTCCTCATTCAAT+AGG | + | chr4_3:73501521-73501540 | None:intergenic | 40.0% | |
| ! | GGAATCAGTTTCTGTTTTCG+AGG | + | chr4_3:73501642-73501661 | None:intergenic | 40.0% |
| TGATCCTGTTAGCACATCAT+TGG | + | chr4_3:73501906-73501925 | None:intergenic | 40.0% | |
| !! | AGCCTTTCTAAAGTCATTGC+CGG | - | chr4_3:73501961-73501980 | Msa0661880:intron | 40.0% |
| ! | AACCGGCAATGACTTTAGAA+AGG | + | chr4_3:73501966-73501985 | None:intergenic | 40.0% |
| TTTGGGTCGATTACAATTGC+AGG | - | chr4_3:73502053-73502072 | Msa0661880:intron | 40.0% | |
| ACCCACAAGAAGAAACACAT+CGG | - | chr4_3:73502082-73502101 | Msa0661880:intron | 40.0% | |
| TCCGATGTGTTTCTTCTTGT+GGG | + | chr4_3:73502086-73502105 | None:intergenic | 40.0% | |
| ATCCGATGTGTTTCTTCTTG+TGG | + | chr4_3:73502087-73502106 | None:intergenic | 40.0% | |
| TAGGAGTAATAATAGCCCTC+TGG | + | chr4_3:73502131-73502150 | None:intergenic | 40.0% | |
| AAGTTCTGTTAGCCAGAAGT+TGG | - | chr4_3:73502194-73502213 | Msa0661880:CDS | 40.0% | |
| !! | TAAGGTGTTTTGCAGGCTAA+AGG | - | chr4_3:73502290-73502309 | Msa0661880:intron | 40.0% |
| ! | GCCCTCGCAGAATTATATTT+TGG | + | chr4_3:73502335-73502354 | None:intergenic | 40.0% |
| TCGTTGCCTCTCAAACGTAA+TGG | - | chr4_3:73498374-73498393 | Msa0661880:CDS | 45.0% | |
| TGTCGAATCCGCTGAAAAGT+TGG | - | chr4_3:73498543-73498562 | Msa0661880:intron | 45.0% | |
| TCACGTGTATTGCACGACAA+TGG | + | chr4_3:73499071-73499090 | None:intergenic | 45.0% | |
| !! | GGCTATAGTAGGTTTTGACC+CGG | - | chr4_3:73499117-73499136 | Msa0661880:intron | 45.0% |
| !! | CGAAAGTACTGTAGCATCGT+CGG | - | chr4_3:73499304-73499323 | Msa0661880:intron | 45.0% |
| GGTATAGCACTGTAGTGTAG+TGG | - | chr4_3:73499402-73499421 | Msa0661880:intron | 45.0% | |
| TGTGGCTTCTGCAATAGACA+AGG | + | chr4_3:73499697-73499716 | None:intergenic | 45.0% | |
| AAGCTGCTCGTATATTGGTG+TGG | + | chr4_3:73499715-73499734 | None:intergenic | 45.0% | |
| TGCAGAAGCTGCTCGTATAT+TGG | + | chr4_3:73499720-73499739 | None:intergenic | 45.0% | |
| ! | TTTGTGTCCAGGCCAAGTTT+TGG | - | chr4_3:73499896-73499915 | Msa0661880:intron | 45.0% |
| !!! | GTTTTGGAAGCAGTATGTGG+AGG | - | chr4_3:73499912-73499931 | Msa0661880:intron | 45.0% |
| ! | ATTGTCTTCAGGTTCCTCTC+TGG | - | chr4_3:73499995-73500014 | Msa0661880:intron | 45.0% |
| AAGAGAACAACGTACCAGAG+AGG | + | chr4_3:73500012-73500031 | None:intergenic | 45.0% | |
| GAGCGTAGAATGACACAGAT+TGG | - | chr4_3:73500128-73500147 | Msa0661880:intron | 45.0% | |
| ATCTACTACGCCATCCTTCT+TGG | + | chr4_3:73500225-73500244 | None:intergenic | 45.0% | |
| ATGGACGGAGAGGTTTATGA+TGG | - | chr4_3:73500275-73500294 | Msa0661880:intron | 45.0% | |
| TAATGATAAGAAGGGGGCAG+AGG | - | chr4_3:73500884-73500903 | Msa0661880:intron | 45.0% | |
| AATGATAAGAAGGGGGCAGA+GGG | - | chr4_3:73500885-73500904 | Msa0661880:intron | 45.0% | |
| ! | TTGTAGCACCTAAGTGGGTT+CGG | - | chr4_3:73501009-73501028 | Msa0661880:intron | 45.0% |
| ACAGTCTCTACTGTAGAAGG+GGG | - | chr4_3:73501106-73501125 | Msa0661880:intron | 45.0% | |
| AGAGTGAAACTCTCCTCCAA+GGG | + | chr4_3:73501134-73501153 | None:intergenic | 45.0% | |
| CCTGTTAGGAACACGGAAAT+TGG | + | chr4_3:73501201-73501220 | None:intergenic | 45.0% | |
| CCAATTTCCGTGTTCCTAAC+AGG | - | chr4_3:73501198-73501217 | Msa0661880:intron | 45.0% | |
| CTCAAAGCGTGGAACATCAA+TGG | + | chr4_3:73501281-73501300 | None:intergenic | 45.0% | |
| ACCTTCGCACAATGTGTAGT+CGG | + | chr4_3:73501417-73501436 | None:intergenic | 45.0% | |
| TGAATGAGGAGCAGTCAACA+TGG | - | chr4_3:73501523-73501542 | Msa0661880:intron | 45.0% | |
| ACAGGATCAGACATAGCATC+AGG | - | chr4_3:73501917-73501936 | Msa0661880:intron | 45.0% | |
| CTATGTACTCCATCCACACA+GGG | + | chr4_3:73501943-73501962 | None:intergenic | 45.0% | |
| TTGTGAGGAAAGTCTACCAG+AGG | - | chr4_3:73502112-73502131 | Msa0661880:intron | 45.0% | |
| TGTGAGGAAAGTCTACCAGA+GGG | - | chr4_3:73502113-73502132 | Msa0661880:intron | 45.0% | |
| GGAACAGAAACTTGCCTTGT+GGG | + | chr4_3:73502429-73502448 | None:intergenic | 45.0% | |
| AGGAACAGAAACTTGCCTTG+TGG | + | chr4_3:73502430-73502449 | None:intergenic | 45.0% | |
| ACTGCTTCCAAAACTTGGCC+TGG | + | chr4_3:73499906-73499925 | None:intergenic | 50.0% | |
| ! | GGAAACTTCCTCTAGGGGTA+TGG | - | chr4_3:73500256-73500275 | Msa0661880:intron | 50.0% |
| ! | ACTTCCTCTAGGGGTATGGA+CGG | - | chr4_3:73500260-73500279 | Msa0661880:intron | 50.0% |
| AACTGCAGTAGGCTTGCATC+GGG | + | chr4_3:73500468-73500487 | None:intergenic | 50.0% | |
| CAACTGCAGTAGGCTTGCAT+CGG | + | chr4_3:73500469-73500488 | None:intergenic | 50.0% | |
| TCACATGACCGAACCCACTT+AGG | + | chr4_3:73501020-73501039 | None:intergenic | 50.0% | |
| GAGAGTGAAACTCTCCTCCA+AGG | + | chr4_3:73501135-73501154 | None:intergenic | 50.0% | |
| AATGCAAAGGCGGACCTGTT+AGG | + | chr4_3:73501215-73501234 | None:intergenic | 50.0% | |
| ! | TGCCGTTGGTGGAACATCAA+TGG | + | chr4_3:73501339-73501358 | None:intergenic | 50.0% |
| ACAATGTGTAGTCGGCCACA+TGG | + | chr4_3:73501409-73501428 | None:intergenic | 50.0% | |
| AACCGGTCTGATTTAGGCAC+AGG | - | chr4_3:73501581-73501600 | Msa0661880:intron | 50.0% | |
| ACCGGTCTGATTTAGGCACA+GGG | - | chr4_3:73501582-73501601 | Msa0661880:intron | 50.0% | |
| TTTAGGCACAGGGGGCTATT+AGG | - | chr4_3:73501592-73501611 | Msa0661880:intron | 50.0% | |
| GCTATGTACTCCATCCACAC+AGG | + | chr4_3:73501944-73501963 | None:intergenic | 50.0% | |
| CACATCGGATGACTGTTGTG+AGG | - | chr4_3:73502097-73502116 | Msa0661880:intron | 50.0% | |
| CGAGGGCAGTATACAGAGAA+CGG | - | chr4_3:73502348-73502367 | Msa0661880:intron | 50.0% | |
| ! | GCAGTATGTGGAGGCACACA+TGG | - | chr4_3:73499921-73499940 | Msa0661880:intron | 55.0% |
| ACTGTAGAAGGGGGATCCCT+TGG | - | chr4_3:73501115-73501134 | Msa0661880:intron | 55.0% | |
| AGGCGGACCTGTTAGGAACA+CGG | + | chr4_3:73501208-73501227 | None:intergenic | 55.0% | |
| ! | TTCCACGCTTTGAGCCCAAG+AGG | - | chr4_3:73501287-73501306 | Msa0661880:intron | 55.0% |
| GCCGACTACACATTGTGCGA+AGG | - | chr4_3:73501413-73501432 | Msa0661880:intron | 55.0% | |
| CCCCTGTGCCTAAATCAGAC+CGG | + | chr4_3:73501586-73501605 | None:intergenic | 55.0% | |
| CCGGTCTGATTTAGGCACAG+GGG | - | chr4_3:73501583-73501602 | Msa0661880:intron | 55.0% | |
| CGGTCTGATTTAGGCACAGG+GGG | - | chr4_3:73501584-73501603 | Msa0661880:intron | 55.0% | |
| ACATAGCATCAGGCCCTGTG+TGG | - | chr4_3:73501927-73501946 | Msa0661880:intron | 55.0% | |
| !! | ATGCTTGCTGTGCCACCAAC+TGG | - | chr4_3:73502401-73502420 | Msa0661880:five_prime_UTR | 55.0% |
| CTTGCCTTGTGGGATCCAGT+TGG | + | chr4_3:73502419-73502438 | None:intergenic | 55.0% | |
| CTGTTGGTCGGTCGCCAAGA+AGG | - | chr4_3:73500208-73500227 | Msa0661880:intron | 60.0% | |
| TGGTCGGTCGCCAAGAAGGA+TGG | - | chr4_3:73500212-73500231 | Msa0661880:intron | 60.0% | |
| CTCTCCGTCCATACCCCTAG+AGG | + | chr4_3:73500267-73500286 | None:intergenic | 60.0% | |
| ! | CTCTAGGGGTATGGACGGAG+AGG | - | chr4_3:73500265-73500284 | Msa0661880:intron | 60.0% |
| GTAGAAGGGGGATCCCTTGG+AGG | - | chr4_3:73501118-73501137 | Msa0661880:intron | 60.0% | |
| AGCCTCTTGGGCTCAAAGCG+TGG | + | chr4_3:73501292-73501311 | None:intergenic | 60.0% | |
| CCACATGGATCAGTCGCTGC+CGG | + | chr4_3:73501394-73501413 | None:intergenic | 60.0% | |
| AGCATCAGGCCCTGTGTGGA+TGG | - | chr4_3:73501931-73501950 | Msa0661880:intron | 60.0% | |
| GCCACCAACTGGATCCCACA+AGG | - | chr4_3:73502412-73502431 | Msa0661880:five_prime_UTR | 60.0% | |
| GCCTTGTGGGATCCAGTTGG+TGG | + | chr4_3:73502416-73502435 | None:intergenic | 60.0% | |
| CCGGCAGCGACTGATCCATG+TGG | - | chr4_3:73501391-73501410 | Msa0661880:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 73498279 | 73502487 | 73498279 | ID=Msa0661880;Name=Msa0661880 |
| chr4_3 | mRNA | 73498279 | 73502487 | 73498279 | ID=Msa0661880-mRNA-1;Parent=Msa0661880;Name=Msa0661880-mRNA-1;_AED=0.08;_eAED=0.08;_QI=114|1|0.87|1|1|1|8|0|249 |
| chr4_3 | exon | 73498279 | 73498461 | 73498279 | ID=Msa0661880-mRNA-1:exon:22214;Parent=Msa0661880-mRNA-1 |
| chr4_3 | exon | 73498551 | 73498691 | 73498551 | ID=Msa0661880-mRNA-1:exon:22213;Parent=Msa0661880-mRNA-1 |
| chr4_3 | exon | 73498784 | 73498845 | 73498784 | ID=Msa0661880-mRNA-1:exon:22212;Parent=Msa0661880-mRNA-1 |
| chr4_3 | exon | 73499812 | 73499912 | 73499812 | ID=Msa0661880-mRNA-1:exon:22211;Parent=Msa0661880-mRNA-1 |
| chr4_3 | exon | 73500750 | 73500859 | 73500750 | ID=Msa0661880-mRNA-1:exon:22210;Parent=Msa0661880-mRNA-1 |
| chr4_3 | exon | 73501011 | 73501073 | 73501011 | ID=Msa0661880-mRNA-1:exon:22209;Parent=Msa0661880-mRNA-1 |
| chr4_3 | exon | 73502187 | 73502273 | 73502187 | ID=Msa0661880-mRNA-1:exon:22208;Parent=Msa0661880-mRNA-1 |
| chr4_3 | exon | 73502371 | 73502487 | 73502371 | ID=Msa0661880-mRNA-1:exon:22207;Parent=Msa0661880-mRNA-1 |
| chr4_3 | five_prime_UTR | 73502374 | 73502487 | 73502374 | ID=Msa0661880-mRNA-1:five_prime_utr;Parent=Msa0661880-mRNA-1 |
| chr4_3 | CDS | 73502371 | 73502373 | 73502371 | ID=Msa0661880-mRNA-1:cds;Parent=Msa0661880-mRNA-1 |
| chr4_3 | CDS | 73502187 | 73502273 | 73502187 | ID=Msa0661880-mRNA-1:cds;Parent=Msa0661880-mRNA-1 |
| chr4_3 | CDS | 73501011 | 73501073 | 73501011 | ID=Msa0661880-mRNA-1:cds;Parent=Msa0661880-mRNA-1 |
| chr4_3 | CDS | 73500750 | 73500859 | 73500750 | ID=Msa0661880-mRNA-1:cds;Parent=Msa0661880-mRNA-1 |
| chr4_3 | CDS | 73499812 | 73499912 | 73499812 | ID=Msa0661880-mRNA-1:cds;Parent=Msa0661880-mRNA-1 |
| chr4_3 | CDS | 73498784 | 73498845 | 73498784 | ID=Msa0661880-mRNA-1:cds;Parent=Msa0661880-mRNA-1 |
| chr4_3 | CDS | 73498551 | 73498691 | 73498551 | ID=Msa0661880-mRNA-1:cds;Parent=Msa0661880-mRNA-1 |
| chr4_3 | CDS | 73498279 | 73498461 | 73498279 | ID=Msa0661880-mRNA-1:cds;Parent=Msa0661880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
