AlfalfaGEDB | Msa0661880

M. sativa cultivar zhongmu-4 / Msa0661880

KEGG: K14408
GO: GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576
PFAM: PF05843.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0661880	XP_003618920.2	99.545	220	1	0	13	232	1	220	9.05e-158	465

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0661880	sp\|Q8GUP1\|CTF77_ARATH	75.909	220	53	0	13	232	1	220	6.39e-123	369

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0661880	G7KP74	99.545	220	1	0	13	232	1	220	4.32e-158	465

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0249100	Msa0661880	0.805508	1.290418e-49	-8.615850e-47
Msa0318880	Msa0661880	0.800273	1.557214e-48	-8.615850e-47
Msa0661880	Msa0893810	0.800240	1.581578e-48	-8.615850e-47
Msa0661880	Msa0908050	0.805653	1.203269e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0661880	MtrunA17_Chr6g0460371	99.545	220	1	0	13	232	1	220	8.32e-162	465

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0661880	AT1G17760.1	75.909	220	53	0	13	232	1	220	6.50e-124	369

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Find 54 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGTTAATGATAAGAAGG+GGG	0.633601	4_3:-73499866	Msa0661880:CDS
AAAGTTGGCTAATGAAGCTC+AGG	0.515124	4_3:-73502186	Msa0661880:intron
AACCAAAATATAATTCTGCG+AGG	0.632273	4_3:-73498414	Msa0661880:CDS
AACCGGCAATGACTTTAGAA+AGG	0.541989	4_3:+73498781	None:intergenic
AACGATACCAATATTTGCAG+AGG	0.642896	4_3:+73498297	None:intergenic
AAGAGAACAACGTACCAGAG+AGG	0.701521	4_3:+73500735	None:intergenic
AAGCTGCTCGTATATTGGTG+TGG	0.629883	4_3:+73501032	None:intergenic
AAGTTCTGTTAGCCAGAAGT+TGG	0.544913	4_3:-73498550	Msa0661880:intron
ACAATAACACTTACAGCTGT+TGG	0.450659	4_3:+73500997	None:intergenic
ACAGGATCAGACATAGCATC+AGG	0.533541	4_3:-73498827	Msa0661880:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTATACCATTACGTTTGAG+AGG	+	chr4_3:73498383-73498402	None:intergenic	30.0%
CGTAATGGTATAATTGTTCT+TGG	-	chr4_3:73498389-73498408	Msa0661880:CDS	30.0%
GATAAGTTGTTTATCCAAAC+AGG	+	chr4_3:73498789-73498808	None:intergenic	30.0%
AAAGTTAAAACTTGGAAACC+GGG	+	chr4_3:73499138-73499157	None:intergenic	30.0%
ATATTAGTGTTGTCGAATTG+TGG	-	chr4_3:73499183-73499202	Msa0661880:intron	30.0%
AATATAAGACTATAGTGCAG+TGG	-	chr4_3:73499207-73499226	Msa0661880:intron	30.0%
TACAACTCGTTGTCAAATAA+TGG	-	chr4_3:73499270-73499289	Msa0661880:intron	30.0%
TTGTCAAATAATGGCTATGT+CGG	-	chr4_3:73499279-73499298	Msa0661880:intron	30.0%
GGGTCAAAGAATTACATATT+TGG	+	chr4_3:73499625-73499644	None:intergenic	30.0%
CAATGAGCAAAATGAACAAA+GGG	+	chr4_3:73499645-73499664	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	73498279	73502487	73498279	ID=Msa0661880;Name=Msa0661880
chr4_3	mRNA	73498279	73502487	73498279	ID=Msa0661880-mRNA-1;Parent=Msa0661880;Name=Msa0661880-mRNA-1;_AED=0.08;_eAED=0.08;_QI=114\|1\|0.87\|1\|1\|1\|8\|0\|249
chr4_3	exon	73498279	73498461	73498279	ID=Msa0661880-mRNA-1:exon:22214;Parent=Msa0661880-mRNA-1
chr4_3	exon	73498551	73498691	73498551	ID=Msa0661880-mRNA-1:exon:22213;Parent=Msa0661880-mRNA-1
chr4_3	exon	73498784	73498845	73498784	ID=Msa0661880-mRNA-1:exon:22212;Parent=Msa0661880-mRNA-1
chr4_3	exon	73499812	73499912	73499812	ID=Msa0661880-mRNA-1:exon:22211;Parent=Msa0661880-mRNA-1
chr4_3	exon	73500750	73500859	73500750	ID=Msa0661880-mRNA-1:exon:22210;Parent=Msa0661880-mRNA-1
chr4_3	exon	73501011	73501073	73501011	ID=Msa0661880-mRNA-1:exon:22209;Parent=Msa0661880-mRNA-1
chr4_3	exon	73502187	73502273	73502187	ID=Msa0661880-mRNA-1:exon:22208;Parent=Msa0661880-mRNA-1
chr4_3	exon	73502371	73502487	73502371	ID=Msa0661880-mRNA-1:exon:22207;Parent=Msa0661880-mRNA-1
chr4_3	five_prime_UTR	73502374	73502487	73502374	ID=Msa0661880-mRNA-1:five_prime_utr;Parent=Msa0661880-mRNA-1
chr4_3	CDS	73502371	73502373	73502371	ID=Msa0661880-mRNA-1:cds;Parent=Msa0661880-mRNA-1
chr4_3	CDS	73502187	73502273	73502187	ID=Msa0661880-mRNA-1:cds;Parent=Msa0661880-mRNA-1
chr4_3	CDS	73501011	73501073	73501011	ID=Msa0661880-mRNA-1:cds;Parent=Msa0661880-mRNA-1
chr4_3	CDS	73500750	73500859	73500750	ID=Msa0661880-mRNA-1:cds;Parent=Msa0661880-mRNA-1
chr4_3	CDS	73499812	73499912	73499812	ID=Msa0661880-mRNA-1:cds;Parent=Msa0661880-mRNA-1
chr4_3	CDS	73498784	73498845	73498784	ID=Msa0661880-mRNA-1:cds;Parent=Msa0661880-mRNA-1
chr4_3	CDS	73498551	73498691	73498551	ID=Msa0661880-mRNA-1:cds;Parent=Msa0661880-mRNA-1
chr4_3	CDS	73498279	73498461	73498279	ID=Msa0661880-mRNA-1:cds;Parent=Msa0661880-mRNA-1

Gene Sequence

>Msa0661880

ATGGATAAAACCGGTGGTGGTACTGAAAAGAAAACAATGGTCGATAAGTATAATGTCGAATCCGCTGAAAAGTTGGCTAATGAAGCTCAGGCCTTGTCTATTGCAGAAGCCACACCAATATACGAGCAGCTTCTGCAGTTATTTCCAACAGCTGCCAAGTTTTGGAAGCAGTATGTGGAGGCACACATGGCTGTAAATAATGATGATGCTATCAAACAGATTTTTAGCCGCTGTTTGTTGAATTGTCTTCAGGTTCCTCTCTGGCGGTGTTACATTCGTTTCATTAGAAAGGTTAATGATAAGAAGGGGGCAGAGGGTCAAGAAGAGACAAAAAAAGCTTTTGAATTTATGCTCAGCTATGTTGGATCAGACATAGCATCAGGCCCTGTGTGGATGGAGTACATAGCCTTTCTAAAGTCATTGCCGGCTGCACACCCACAAGAAGAAACACATCGGATGACTGTTGTGAGGAAAGTCTACCAGAGGGCTATTATTACTCCTACACATCACATTGAACAACTTTGGAAAGACTATGATAGTTTTGAAAGTTCTGTTAGCCAGAAGTTGGCTAAAGGACTGATATCCGAATATCAACCAAAATATAATTCTGCGAGGGCAGTATACAGAGAACGGAAGAAGTTTTTCGATGAAATTGATTGGAATATGCTTGCTGTGCCACCAACTGGATCCCACAAGGCAAGTTTCTGTTCCTCTGCAAATATTGGTATCGTTGCTATCAGTTTCTGTTAA

Protein sequence

>Msa0661880

MDKTGGGTEKKTMVDKYNVESAEKLANEAQALSIAEATPIYEQLLQLFPTAAKFWKQYVEAHMAVNNDDAIKQIFSRCLLNCLQVPLWRCYIRFIRKVNDKKGAEGQEETKKAFEFMLSYVGSDIASGPVWMEYIAFLKSLPAAHPQEETHRMTVVRKVYQRAIITPTHHIEQLWKDYDSFESSVSQKLAKGLISEYQPKYNSARAVYRERKKFFDEIDWNMLAVPPTGSHKASFCSSANIGIVAISFC*