AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0249100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0249100 MtrunA17_Chr2g0304541 88.079 151 2 1 24 158 1 151 2.53e-88 267
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0249100 AT2G12550.1 55.556 153 48 4 24 158 1 151 2.75e-49 166

Find 30 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTGTCACTTCTCCTCAAC+AGG 0.299237 2_2:+34958415 Msa0249100:CDS
GAATTCTACCAGCACAAATA+AGG 0.341318 2_2:-34958325 None:intergenic
AAGAAGTCGATTTAGAGAAT+TGG 0.355332 2_2:+34958237 Msa0249100:CDS
CTCATAGGCTTGCTCGTATT+AGG 0.406605 2_2:+34958468 Msa0249100:CDS
TTCATTAACCTTATTTGTGC+TGG 0.424720 2_2:+34958317 Msa0249100:CDS
CTGCAACTGCATTGGCTGAA+AGG 0.425202 2_2:+34960745 Msa0249100:CDS
TTCTTCACGTAACGAAGAAA+TGG 0.446494 2_2:-34958261 None:intergenic
AGTGACAGTAGCGAGAATCT+TGG 0.449149 2_2:-34958402 None:intergenic
ATTTGGCAGGGCAGTAATGA+TGG 0.451862 2_2:+34960982 Msa0249100:intron
TTGAGGAACAAAGCTCTCAT+AGG 0.473510 2_2:+34958453 Msa0249100:CDS
GAAGTGAGGATTATCGCAAT+TGG 0.482473 2_2:-34958297 None:intergenic
GGACTGATGCTTCATGCAAA+GGG 0.483061 2_2:+34961004 Msa0249100:CDS
AAGATAGCAGGAACATGGTC+AGG 0.484618 2_2:+34958206 Msa0249100:CDS
CAGGGCAGCTGCAACTGCAT+TGG 0.489381 2_2:+34960737 Msa0249100:intron
ATGGCGAAATTGAAGATAGC+AGG 0.549751 2_2:+34958194 Msa0249100:CDS
GGGTCAGTCTCTTGTTGTTG+AGG 0.549824 2_2:+34958436 Msa0249100:CDS
AGTGGACAGAAAGTACGCTT+AGG 0.551971 2_2:+34960822 Msa0249100:CDS
TTTGGCAGGGCAGTAATGAT+GGG 0.575905 2_2:+34960983 Msa0249100:intron
TCTATGTTAAAGTCTTCAAG+AGG 0.581402 2_2:-34960786 None:intergenic
CGAGTGGAGTGATCGCAACA+TGG 0.585539 2_2:+34958175 Msa0249100:CDS
GGGACTGATGCTTCATGCAA+AGG 0.602701 2_2:+34961003 Msa0249100:CDS
CAAATAAGGTTAATGAAGTG+AGG 0.605620 2_2:-34958311 None:intergenic
ATAGAAGTTGAAGATCAAAG+TGG 0.620042 2_2:+34960804 Msa0249100:CDS
ACAAGAGACTGACCCTGTTG+AGG 0.629157 2_2:-34958428 None:intergenic
CAATCAACAACAGAATCGAG+TGG 0.641398 2_2:+34958159 Msa0249100:CDS
AATTGAAGATAGCAGGAACA+TGG 0.644813 2_2:+34958201 Msa0249100:CDS
TTGGCTGAAAGGCATGCAGA+TGG 0.670570 2_2:+34960756 Msa0249100:CDS
GACTGATGCTTCATGCAAAG+GGG 0.691968 2_2:+34961005 Msa0249100:CDS
TAGGATCAGAGATTGATCAG+AGG 0.717978 2_2:+34960841 Msa0249100:CDS
ACTGTCACTTCTCCTCAACA+GGG 0.732804 2_2:+34958416 Msa0249100:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTAAAGATTTTTTATTTT+AGG - chr2_2:34959638-34959657 None:intergenic 10.0%
!!! TTCCTTTTTAATTATGTTTA+TGG + chr2_2:34958532-34958551 Msa0249100:intron 15.0%
!! AAAATAATGTTAGATAGTTA+GGG + chr2_2:34958914-34958933 Msa0249100:intron 15.0%
!!! TTTTATATGCAATTTTGTTT+CGG + chr2_2:34960088-34960107 Msa0249100:intron 15.0%
!!! TTATCATATCCTATAATTTT+GGG + chr2_2:34960577-34960596 Msa0249100:intron 15.0%
!!! GTTATTTTTGATACCTAATT+GGG - chr2_2:34958381-34958400 None:intergenic 20.0%
!!! AGTTATTTTTGATACCTAAT+TGG - chr2_2:34958382-34958401 None:intergenic 20.0%
!! CACCATAAACATAATTAAAA+AGG - chr2_2:34958537-34958556 None:intergenic 20.0%
!!! TATTTTCTCAAATACATGTT+TGG - chr2_2:34958900-34958919 None:intergenic 20.0%
!! GAAAATAATGTTAGATAGTT+AGG + chr2_2:34958913-34958932 Msa0249100:intron 20.0%
!!! ATTTTAATGTTAGGTAGTTT+GGG + chr2_2:34958944-34958963 Msa0249100:intron 20.0%
!! TATTTCACAATAATTCCTTA+GGG - chr2_2:34959680-34959699 None:intergenic 20.0%
!! TTATTTCACAATAATTCCTT+AGG - chr2_2:34959681-34959700 None:intergenic 20.0%
!! TATTGTGAAATAATTATCCT+AGG + chr2_2:34959688-34959707 Msa0249100:intron 20.0%
!! AGTAAAACATTATTTACCAA+AGG - chr2_2:34959975-34959994 None:intergenic 20.0%
!! CTATTGAATAAACAAAGAAA+TGG - chr2_2:34960014-34960033 None:intergenic 20.0%
!!! CATTTCTTTGTTTATTCAAT+AGG + chr2_2:34960012-34960031 Msa0249100:intron 20.0%
!! AATGATAGAAATTACATGAA+CGG + chr2_2:34960165-34960184 Msa0249100:intron 20.0%
!! TTCTACAAAAGAATTGAATA+TGG + chr2_2:34960249-34960268 Msa0249100:intron 20.0%
!! TTTCATGTAATTATGCTTAA+AGG - chr2_2:34960276-34960295 None:intergenic 20.0%
!!! TTTTTCTCAATAAAACAACT+AGG - chr2_2:34960435-34960454 None:intergenic 20.0%
!!! AGTTGTTTTATTGAGAAAAA+TGG + chr2_2:34960435-34960454 Msa0249100:intron 20.0%
!! AGAAAAATGGATATTTGATT+TGG + chr2_2:34960448-34960467 Msa0249100:intron 20.0%
!!! CTTATCATATCCTATAATTT+TGG + chr2_2:34960576-34960595 Msa0249100:intron 20.0%
!! ATTACAGCTAATAATAAATC+AGG + chr2_2:34960632-34960651 Msa0249100:intron 20.0%
!! TAATAATAAATCAGGAAGAA+AGG + chr2_2:34960640-34960659 Msa0249100:intron 20.0%
!!! AATTAGTTTTTATAAGTGTG+AGG + chr2_2:34960900-34960919 Msa0249100:intron 20.0%
!!! ATTAGTTTTTATAAGTGTGA+GGG + chr2_2:34960901-34960920 Msa0249100:intron 20.0%
! TAAAAGAGAGATAAATATCG+TGG - chr2_2:34958497-34958516 None:intergenic 25.0%
! CCATAGTTAATCATTAACAA+CGG - chr2_2:34958563-34958582 None:intergenic 25.0%
! ATACAAATTATTAGCCGTAT+TGG - chr2_2:34958611-34958630 None:intergenic 25.0%
! ATTTCACTTATAATAGTGAC+AGG + chr2_2:34958766-34958785 Msa0249100:intron 25.0%
! GATTAATCATTTATGAAGCA+CGG - chr2_2:34958844-34958863 None:intergenic 25.0%
! GCTTCATAAATGATTAATCT+CGG + chr2_2:34958845-34958864 Msa0249100:intron 25.0%
! TCAAATACATGTTTGGAAAA+GGG - chr2_2:34958893-34958912 None:intergenic 25.0%
!!! GGAATTACCATTTTAATGTT+AGG + chr2_2:34958935-34958954 Msa0249100:intron 25.0%
! CAAACTACCTAACATTAAAA+TGG - chr2_2:34958945-34958964 None:intergenic 25.0%
!!! CATTTTAATGTTAGGTAGTT+TGG + chr2_2:34958943-34958962 Msa0249100:intron 25.0%
! TTAACTATGATTATGAAGCA+TGG + chr2_2:34959009-34959028 Msa0249100:intron 25.0%
! ATTAATCAATCTATGAAGCA+CGG - chr2_2:34959242-34959261 None:intergenic 25.0%
! CTTCATAGATTGATTAATCT+CGG + chr2_2:34959244-34959263 Msa0249100:intron 25.0%
! AAAAATACATGGTTGGAAAA+GGG - chr2_2:34959292-34959311 None:intergenic 25.0%
! AAAAAATACATGGTTGGAAA+AGG - chr2_2:34959293-34959312 None:intergenic 25.0%
! CATCATAAAAAATACATGGT+TGG - chr2_2:34959299-34959318 None:intergenic 25.0%
! GTCACATCATAAAAAATACA+TGG - chr2_2:34959303-34959322 None:intergenic 25.0%
! GAAATTGAATATACGTTTAG+TGG + chr2_2:34959413-34959432 Msa0249100:intron 25.0%
! ATTGATGGAAGTAATGTAAT+TGG + chr2_2:34959513-34959532 Msa0249100:intron 25.0%
! TGCAATTTCAAAGACTAAAA+TGG - chr2_2:34959568-34959587 None:intergenic 25.0%
!!! TTTGCAGTTTTTCAAGTTTA+AGG + chr2_2:34959715-34959734 Msa0249100:intron 25.0%
!! TTCAAGTTTAAGGACTAAAT+TGG + chr2_2:34959725-34959744 Msa0249100:intron 25.0%
! ATCATTATTGTAGATTCGTA+GGG + chr2_2:34959816-34959835 Msa0249100:intron 25.0%
!! GTTTTACTATTTACTCCTTT+TGG + chr2_2:34959987-34960006 Msa0249100:intron 25.0%
!! CCGTTTAAAATTCACATTTA+GGG - chr2_2:34960222-34960241 None:intergenic 25.0%
!! CCCTAAATGTGAATTTTAAA+CGG + chr2_2:34960219-34960238 Msa0249100:intron 25.0%
!! CCTAAATGTGAATTTTAAAC+GGG + chr2_2:34960220-34960239 Msa0249100:intron 25.0%
!! CTAAATGTGAATTTTAAACG+GGG + chr2_2:34960221-34960240 Msa0249100:intron 25.0%
! TTAAGAGATTAATCATTCCT+GGG - chr2_2:34960392-34960411 None:intergenic 25.0%
! ATTAAGAGATTAATCATTCC+TGG - chr2_2:34960393-34960412 None:intergenic 25.0%
! TTGTTAGATATGATCTGAAA+AGG + chr2_2:34960545-34960564 Msa0249100:intron 25.0%
! GTAATAGTTACCTTAGTTAA+GGG - chr2_2:34960617-34960636 None:intergenic 25.0%
! TGTAATAGTTACCTTAGTTA+AGG - chr2_2:34960618-34960637 None:intergenic 25.0%
! GTGATACTTAAGTTATCATT+TGG + chr2_2:34960965-34960984 Msa0249100:intron 25.0%
! TTTCTCTTTTTCTTGAGTAG+TGG - chr2_2:34958132-34958151 None:intergenic 30.0%
! AAGAAGTCGATTTAGAGAAT+TGG + chr2_2:34958237-34958256 Msa0249100:CDS 30.0%
CAAATAAGGTTAATGAAGTG+AGG - chr2_2:34958314-34958333 None:intergenic 30.0%
! TTCATTAACCTTATTTGTGC+TGG + chr2_2:34958317-34958336 Msa0249100:CDS 30.0%
TTTGATACCTAATTGGGTTA+GGG - chr2_2:34958375-34958394 None:intergenic 30.0%
! TTTTGATACCTAATTGGGTT+AGG - chr2_2:34958376-34958395 None:intergenic 30.0%
CCGTTGTTAATGATTAACTA+TGG + chr2_2:34958560-34958579 Msa0249100:intron 30.0%
CATTCATTAAATGATGCATG+TGG + chr2_2:34958688-34958707 Msa0249100:intron 30.0%
CTCAAATACATGTTTGGAAA+AGG - chr2_2:34958894-34958913 None:intergenic 30.0%
GGAATCACCAATTATGTTTA+TGG + chr2_2:34958965-34958984 Msa0249100:intron 30.0%
TATTCTGATCAACGTAATGT+TGG + chr2_2:34959363-34959382 Msa0249100:intron 30.0%
TGGTTAGTATCTTCAAAATC+TGG + chr2_2:34959383-34959402 Msa0249100:intron 30.0%
GGTTAGTATCTTCAAAATCT+GGG + chr2_2:34959384-34959403 Msa0249100:intron 30.0%
TGATTGAAGTTCATGAAATG+TGG + chr2_2:34959485-34959504 Msa0249100:intron 30.0%
TGAAATGTGGTCTAAATTGA+TGG + chr2_2:34959498-34959517 Msa0249100:intron 30.0%
GAAAAACTGCAAAAATTCCT+AGG - chr2_2:34959708-34959727 None:intergenic 30.0%
TAATGATGTGCATATTGCTA+TGG - chr2_2:34959803-34959822 None:intergenic 30.0%
CATCATTATTGTAGATTCGT+AGG + chr2_2:34959815-34959834 Msa0249100:intron 30.0%
CAGAAAATAGGAAAAAGAAG+CGG - chr2_2:34959860-34959879 None:intergenic 30.0%
AATGGATCAAAGCAGAAAAT+AGG - chr2_2:34959872-34959891 None:intergenic 30.0%
!! CAAACACTACTTTTATCCTT+TGG + chr2_2:34959956-34959975 Msa0249100:intron 30.0%
AAACAAAGAAATGGTCCAAA+AGG - chr2_2:34960005-34960024 None:intergenic 30.0%
TTCAATAGGAAATACACAAC+CGG + chr2_2:34960026-34960045 Msa0249100:intron 30.0%
ACACACACTTTATTACTTAC+CGG - chr2_2:34960048-34960067 None:intergenic 30.0%
CATGTAATTTCTATCATTCG+AGG - chr2_2:34960163-34960182 None:intergenic 30.0%
GGCAATTAGACTATATTCAT+CGG - chr2_2:34960191-34960210 None:intergenic 30.0%
! TTCACATTTAGGGCTTAATT+CGG - chr2_2:34960212-34960231 None:intergenic 30.0%
! CCCGTTTAAAATTCACATTT+AGG - chr2_2:34960223-34960242 None:intergenic 30.0%
CTCAATAAAACAACTAGGAT+AGG - chr2_2:34960430-34960449 None:intergenic 30.0%
!! TTTGATTTGGTATGTCCATT+CGG + chr2_2:34960461-34960480 Msa0249100:intron 30.0%
AGATCTGATCCCAAAATTAT+AGG - chr2_2:34960589-34960608 None:intergenic 30.0%
AGTACTGTAATCAGATTTGT+TGG - chr2_2:34960669-34960688 None:intergenic 30.0%
TAGTTGAATTTCATGCAAAC+AGG + chr2_2:34960718-34960737 Msa0249100:intron 30.0%
AGTTGAATTTCATGCAAACA+GGG + chr2_2:34960719-34960738 Msa0249100:intron 30.0%
TCTATGTTAAAGTCTTCAAG+AGG - chr2_2:34960789-34960808 None:intergenic 30.0%
ATAGAAGTTGAAGATCAAAG+TGG + chr2_2:34960804-34960823 Msa0249100:CDS 30.0%
!!! GTGAGGGTTTTAAATATGAA+AGG + chr2_2:34960917-34960936 Msa0249100:intron 30.0%
TGAAAGGACAATATACCATT+TGG + chr2_2:34960933-34960952 Msa0249100:intron 30.0%
TACTTAAGTTATCATTTGGC+AGG + chr2_2:34960969-34960988 Msa0249100:intron 30.0%
ACTTAAGTTATCATTTGGCA+GGG + chr2_2:34960970-34960989 Msa0249100:intron 30.0%
AATTGAAGATAGCAGGAACA+TGG + chr2_2:34958201-34958220 Msa0249100:CDS 35.0%
TTCTTCACGTAACGAAGAAA+TGG - chr2_2:34958264-34958283 None:intergenic 35.0%
GAATTCTACCAGCACAAATA+AGG - chr2_2:34958328-34958347 None:intergenic 35.0%
! CAAAGTTTTGCTTTAGTGAC+CGG - chr2_2:34958657-34958676 None:intergenic 35.0%
TCACTTATAATAGTGACAGG+AGG + chr2_2:34958769-34958788 Msa0249100:intron 35.0%
CACTTATAATAGTGACAGGA+GGG + chr2_2:34958770-34958789 Msa0249100:intron 35.0%
ACCAATTATGTTTATGGTGC+TGG + chr2_2:34958971-34958990 Msa0249100:intron 35.0%
ACCAGCACCATAAACATAAT+TGG - chr2_2:34958975-34958994 None:intergenic 35.0%
AATTTGAGAACACAGACACA+CGG + chr2_2:34959055-34959074 Msa0249100:intron 35.0%
CATTCAGTAGTTATATGCGT+CGG + chr2_2:34959151-34959170 Msa0249100:intron 35.0%
! CGAATGATAGATGTTGCTTA+AGG + chr2_2:34959324-34959343 Msa0249100:intron 35.0%
AGACTCCTTGTTAGTTAGTT+AGG + chr2_2:34959536-34959555 Msa0249100:intron 35.0%
GACTCCTTGTTAGTTAGTTA+GGG + chr2_2:34959537-34959556 Msa0249100:intron 35.0%
GATTCCCTAACTAACTAACA+AGG - chr2_2:34959544-34959563 None:intergenic 35.0%
!! TAGTCTTTGAAATTGCACTC+TGG + chr2_2:34959571-34959590 Msa0249100:intron 35.0%
ATAATTCCTTAGGGACATGA+TGG - chr2_2:34959671-34959690 None:intergenic 35.0%
!! CACTTGGTGCATTCTAAAAA+TGG - chr2_2:34959890-34959909 None:intergenic 35.0%
! AGTAGTCAGCTTAGTTCTTA+AGG + chr2_2:34960115-34960134 Msa0249100:intron 35.0%
!! TTGATTTGGTATGTCCATTC+GGG + chr2_2:34960462-34960481 Msa0249100:intron 35.0%
GATCTAACATCCCTTAACTA+AGG + chr2_2:34960604-34960623 Msa0249100:intron 35.0%
ATTCAACTAAGCTTCAGAGA+GGG - chr2_2:34960707-34960726 None:intergenic 35.0%
AATTCAACTAAGCTTCAGAG+AGG - chr2_2:34960708-34960727 None:intergenic 35.0%
TATCACTTCAACAGTCCAAA+TGG - chr2_2:34960951-34960970 None:intergenic 35.0%
CAATCAACAACAGAATCGAG+TGG + chr2_2:34958159-34958178 Msa0249100:CDS 40.0%
ATGGCGAAATTGAAGATAGC+AGG + chr2_2:34958194-34958213 Msa0249100:CDS 40.0%
GAAGTGAGGATTATCGCAAT+TGG - chr2_2:34958300-34958319 None:intergenic 40.0%
! TTGTGCTGGTAGAATTCTCA+AGG + chr2_2:34958331-34958350 Msa0249100:intron 40.0%
! ACCTAATTGGGTTAGGGTTA+GGG - chr2_2:34958369-34958388 None:intergenic 40.0%
! TACCTAATTGGGTTAGGGTT+AGG - chr2_2:34958370-34958389 None:intergenic 40.0%
TTGAGGAACAAAGCTCTCAT+AGG + chr2_2:34958453-34958472 Msa0249100:CDS 40.0%
CAGTGTAATTATACACCCTC+CGG + chr2_2:34958635-34958654 Msa0249100:intron 40.0%
TGTATGTGTCAGTGTTGTGT+CGG + chr2_2:34958793-34958812 Msa0249100:intron 40.0%
AATTGCACTCTGGCACAATT+TGG + chr2_2:34959581-34959600 Msa0249100:intron 40.0%
!! TCCTGGGCTAAAAAGTGTTT+GGG - chr2_2:34960376-34960395 None:intergenic 40.0%
!! TTCCTGGGCTAAAAAGTGTT+TGG - chr2_2:34960377-34960396 None:intergenic 40.0%
AATGCATGTACAATCCCGAA+TGG - chr2_2:34960479-34960498 None:intergenic 40.0%
TAGGATCAGAGATTGATCAG+AGG + chr2_2:34960841-34960860 Msa0249100:CDS 40.0%
GATGCATGGAAATTCTGCAA+TGG - chr2_2:34960873-34960892 None:intergenic 40.0%
TGCAGAATTTCCATGCATCT+TGG + chr2_2:34960874-34960893 Msa0249100:intron 40.0%
AGAATTTCCATGCATCTTGG+TGG + chr2_2:34960877-34960896 Msa0249100:intron 40.0%
ACTAATTCCACCAAGATGCA+TGG - chr2_2:34960887-34960906 None:intergenic 40.0%
AAGATAGCAGGAACATGGTC+AGG + chr2_2:34958206-34958225 Msa0249100:CDS 45.0%
ACCCTAACCCTAACCCAATT+AGG + chr2_2:34958365-34958384 Msa0249100:intron 45.0%
AGTGACAGTAGCGAGAATCT+TGG - chr2_2:34958405-34958424 None:intergenic 45.0%
! TACTGTCACTTCTCCTCAAC+AGG + chr2_2:34958415-34958434 Msa0249100:CDS 45.0%
! ACTGTCACTTCTCCTCAACA+GGG + chr2_2:34958416-34958435 Msa0249100:CDS 45.0%
! CTCATAGGCTTGCTCGTATT+AGG + chr2_2:34958468-34958487 Msa0249100:CDS 45.0%
! GTTTTGCTTTAGTGACCGGA+GGG - chr2_2:34958653-34958672 None:intergenic 45.0%
! AGTTTTGCTTTAGTGACCGG+AGG - chr2_2:34958654-34958673 None:intergenic 45.0%
GTATGTGTCAGTGTTGTGTC+GGG + chr2_2:34958794-34958813 Msa0249100:intron 45.0%
TCTCGGTTGAGAAACCTTAG+CGG + chr2_2:34959261-34959280 Msa0249100:intron 45.0%
! TCCTTAGGGACATGATGGAA+CGG - chr2_2:34959666-34959685 None:intergenic 45.0%
TTCGACTCAGAGACTAGCAT+AGG + chr2_2:34959755-34959774 Msa0249100:intron 45.0%
! CATGAGTTCTGGTCTACACT+TGG - chr2_2:34959906-34959925 None:intergenic 45.0%
ACAGAACAGAGCATGAGTTC+TGG - chr2_2:34959917-34959936 None:intergenic 45.0%
!! TCCCAAACACTTTTTAGCCC+AGG + chr2_2:34960372-34960391 Msa0249100:intron 45.0%
! AGTGGACAGAAAGTACGCTT+AGG + chr2_2:34960822-34960841 Msa0249100:CDS 45.0%
ATTTGGCAGGGCAGTAATGA+TGG + chr2_2:34960982-34961001 Msa0249100:intron 45.0%
TTTGGCAGGGCAGTAATGAT+GGG + chr2_2:34960983-34961002 Msa0249100:intron 45.0%
ACAAGAGACTGACCCTGTTG+AGG - chr2_2:34958431-34958450 None:intergenic 50.0%
!! GGGTCAGTCTCTTGTTGTTG+AGG + chr2_2:34958436-34958455 Msa0249100:CDS 50.0%
TGGAGCTCAAATACCGACAC+CGG + chr2_2:34958580-34958599 Msa0249100:intron 50.0%
! ATTAGCCGTATTGGCGTGTC+CGG - chr2_2:34958602-34958621 None:intergenic 50.0%
TCTCGGTCGAGAAACCTTAG+CGG + chr2_2:34958862-34958881 Msa0249100:intron 50.0%
CGCGTTGTTGTGTCAAACAC+CGG + chr2_2:34959192-34959211 Msa0249100:intron 50.0%
GCGTTGTTGTGTCAAACACC+GGG + chr2_2:34959193-34959212 Msa0249100:intron 50.0%
TATGAAGCACGGACACTCCT+CGG - chr2_2:34958833-34958852 None:intergenic 50.0%
CTCGGTTGAGAAACCTTAGC+GGG + chr2_2:34959262-34959281 Msa0249100:intron 50.0%
TCGGTTGAGAAACCTTAGCG+GGG + chr2_2:34959263-34959282 Msa0249100:intron 50.0%
! CCTTAGGGACATGATGGAAC+GGG - chr2_2:34959665-34959684 None:intergenic 50.0%
!! CTGCAACTGCATTGGCTGAA+AGG + chr2_2:34960745-34960764 Msa0249100:CDS 50.0%
! TTGGCTGAAAGGCATGCAGA+TGG + chr2_2:34960756-34960775 Msa0249100:CDS 50.0%
CGAGTGGAGTGATCGCAACA+TGG + chr2_2:34958175-34958194 Msa0249100:CDS 55.0%
ATGAAGCACGGACACTCCTC+AGG - chr2_2:34958832-34958851 None:intergenic 55.0%
CTCGGTCGAGAAACCTTAGC+GGG + chr2_2:34958863-34958882 Msa0249100:intron 55.0%
TCGGTCGAGAAACCTTAGCG+GGG + chr2_2:34958864-34958883 Msa0249100:intron 55.0%
!! CGTCGGTGTCGTGTTAGTGT+CGG + chr2_2:34959168-34959187 Msa0249100:intron 55.0%
CACGGACACTCCTCGGATAA+GGG - chr2_2:34959224-34959243 None:intergenic 55.0%
CCCGTTCCATCATGTCCCTA+AGG + chr2_2:34959662-34959681 Msa0249100:intron 55.0%
! CGTATTGGCGTGTCCGGTGT+CGG - chr2_2:34958596-34958615 None:intergenic 60.0%
CGACACCGGACACGCCAATA+CGG + chr2_2:34958594-34958613 Msa0249100:intron 60.0%
! GGACACTCCTCAGGTTGTCC+AGG - chr2_2:34958823-34958842 None:intergenic 60.0%
GGAAAAGGGAGACCCCGCTA+AGG - chr2_2:34958879-34958898 None:intergenic 60.0%
! CCTCGGATAAGGGTGTGTCC+CGG - chr2_2:34959214-34959233 None:intergenic 60.0%
GCACGGACACTCCTCGGATA+AGG - chr2_2:34959225-34959244 None:intergenic 60.0%
GGAAAAGGGAGACCCCGCTA+AGG - chr2_2:34958879-34958898 None:intergenic 60.0%
CAGGGCAGCTGCAACTGCAT+TGG + chr2_2:34960737-34960756 Msa0249100:intron 60.0%
CAGTGTTGTGTCGGGCGTCC+TGG + chr2_2:34958802-34958821 Msa0249100:intron 65.0%
CCGGGACACACCCTTATCCG+AGG + chr2_2:34959211-34959230 Msa0249100:intron 65.0%
CGGGCGTCCTGGACAACCTG+AGG + chr2_2:34958813-34958832 Msa0249100:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 34958125 34961024 34958125 ID=Msa0249100;Name=Msa0249100
chr2_2 mRNA 34958125 34961024 34958125 ID=Msa0249100-mRNA-1;Parent=Msa0249100;Name=Msa0249100-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.66|0.25|1|0.66|0.25|4|0|158
chr2_2 exon 34958125 34958338 34958125 ID=Msa0249100-mRNA-1:exon:11410;Parent=Msa0249100-mRNA-1
chr2_2 exon 34958387 34958489 34958387 ID=Msa0249100-mRNA-1:exon:11411;Parent=Msa0249100-mRNA-1
chr2_2 exon 34960740 34960862 34960740 ID=Msa0249100-mRNA-1:exon:11412;Parent=Msa0249100-mRNA-1
chr2_2 exon 34960991 34961024 34960991 ID=Msa0249100-mRNA-1:exon:11413;Parent=Msa0249100-mRNA-1
chr2_2 CDS 34958125 34958338 34958125 ID=Msa0249100-mRNA-1:cds;Parent=Msa0249100-mRNA-1
chr2_2 CDS 34958387 34958489 34958387 ID=Msa0249100-mRNA-1:cds;Parent=Msa0249100-mRNA-1
chr2_2 CDS 34960740 34960862 34960740 ID=Msa0249100-mRNA-1:cds;Parent=Msa0249100-mRNA-1
chr2_2 CDS 34960991 34961024 34960991 ID=Msa0249100-mRNA-1:cds;Parent=Msa0249100-mRNA-1
Gene Sequence

>Msa0249100

AATACCACTACTCAAGAAAAAGAGAAACAATCATCAATCAACAACAGAATCGAGTGGAGTGATCGCAACATGGCGAAATTGAAGATAGCAGGAACATGGTCAGGTGTATTAGAAGAAGTCGATTTAGAGAATTGGACCATTTCTTCGTTACGTGAAGAAGTTGCGAAGCGATCCAATTGCGATAATCCTCACTTCATTAACCTTATTTGTGCTGGTATCAAAAATAACTCCAAGATTCTCGCTACTGTCACTTCTCCTCAACAGGGTCAGTCTCTTGTTGTTGAGGAACAAAGCTCTCATAGGCTTGCTCGTATTAGGGCAGCTGCAACTGCATTGGCTGAAAGGCATGCAGATGGTTCATTACCTCTTGAAGACTTTAACATAGAAGTTGAAGATCAAAGTGGACAGAAAGTACGCTTAGGATCAGAGATTGATCAGAGGGCAGTAATGATGGGACTGATGCTTCATGCAAAG

Protein sequence

>Msa0249100

NTTTQEKEKQSSINNRIEWSDRNMAKLKIAGTWSGVLEEVDLENWTISSLREEVAKRSNCDNPHFINLICAGIKNNSKILATVTSPQQGQSLVVEEQSSHRLARIRAAATALAERHADGSLPLEDFNIEVEDQSGQKVRLGSEIDQRAVMMGLMLHAK