AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0908050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0908050 MtrunA17_Chr3g0117291 82.594 902 69 6 1 841 488 1362 0.0 1373
Msa0908050 MtrunA17_Chr3g0117281 54.204 666 138 11 303 841 757 1382 0.0 580
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0908050 AT4G24680.2 35.867 421 231 13 303 693 678 1089 1.66e-44 174
Msa0908050 AT4G24680.3 35.867 421 231 13 303 693 677 1088 1.69e-44 174
Msa0908050 AT4G24680.5 35.867 421 231 13 303 693 677 1088 1.69e-44 174
Msa0908050 AT4G24680.4 35.867 421 231 13 303 693 652 1063 1.71e-44 174
Msa0908050 AT4G24680.1 35.867 421 231 13 303 693 692 1103 1.93e-44 174

Find 231 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGACTTGGGTTCCTATTC+TGG 0.167206 6_2:-9036589 None:intergenic
AGCCTCCGGATTCCCAAATT+TGG 0.186676 6_2:-9039636 None:intergenic
TAGTGTCATTCTCAGCTTTC+GGG 0.203998 6_2:-9038216 None:intergenic
CTATTAACCTGCATGTTTCT+TGG 0.230485 6_2:-9038598 None:intergenic
ATTATTTGATGGCTGAAATA+TGG 0.238610 6_2:-9039469 None:intergenic
AGAGATTCTTCAACTTTATC+AGG 0.257525 6_2:+9037497 Msa0908050:CDS
GCTCGTGGAGTTGGTGCTTT+TGG 0.258510 6_2:+9037248 Msa0908050:CDS
AGGAAATAGATCAAAGAAAA+AGG 0.264563 6_2:+9039497 Msa0908050:CDS
GGAACATGGATATGGATTTA+AGG 0.269555 6_2:+9036862 Msa0908050:exon
ATCTTGTTCGGTGGTTTAAC+AGG 0.272014 6_2:-9038664 None:intergenic
TCCTATGCTTTCAAGAGATT+TGG 0.274928 6_2:-9036958 None:intergenic
TGATGCCACTGATGCTTTAC+AGG 0.281365 6_2:+9038093 Msa0908050:CDS
GGGTAGAGAAGCTCCAAATT+TGG 0.286008 6_2:+9039623 Msa0908050:CDS
TAAGCAAATAACAAGTTTGA+TGG 0.296794 6_2:+9036735 Msa0908050:five_prime_UTR
GTGCCCTTCTGTCGACTAAA+AGG 0.309557 6_2:-9039296 None:intergenic
ACCCATGAATTCAACTTCTA+TGG 0.319875 6_2:+9038306 Msa0908050:CDS
CTACATGGTCTGGCGGTATC+AGG 0.320801 6_2:-9036703 None:intergenic
ATGAACGAGGTTTCCTTTCA+TGG 0.321620 6_2:+9036542 Msa0908050:five_prime_UTR
ATAGTGTCATTCTCAGCTTT+CGG 0.324344 6_2:-9038217 None:intergenic
TCGCTTCTGATGATTGCTTC+TGG 0.325514 6_2:-9037426 None:intergenic
ATCTAACTCTCTGTCTTCCC+TGG 0.329031 6_2:-9038446 None:intergenic
AAATCATGCTTCAGCTGTTC+CGG 0.331084 6_2:+9039220 Msa0908050:CDS
TTTCCTCTATGATTATTTGA+TGG 0.331406 6_2:-9039480 None:intergenic
GAAGCTTCTTCTCAAACTTC+GGG 0.341748 6_2:+9036906 Msa0908050:CDS
TGCTCTTCTCAGAGACTGAT+TGG 0.344045 6_2:-9039599 None:intergenic
CAGGTTATTCTTTCTACTAT+AGG 0.349726 6_2:-9038548 None:intergenic
ATAACTCGGCATACTATTTC+AGG 0.355101 6_2:+9038925 Msa0908050:CDS
GCAACAGCATTGGGAAAATC+AGG 0.356972 6_2:+9038046 Msa0908050:CDS
GACTCCTTGTCCAGGTCATC+TGG 0.360102 6_2:-9039549 None:intergenic
TTCCTTCTGCAATCATTCTC+CGG 0.365083 6_2:-9036843 None:intergenic
AAAGGAAGAACAACAGGAAT+AGG 0.368456 6_2:+9038350 Msa0908050:CDS
ATTCCATGGGAGTGGGGCTT+TGG 0.369060 6_2:+9038633 Msa0908050:CDS
ACCAGGTTTACTAGCGTCAT+TGG 0.387287 6_2:-9039180 None:intergenic
GGTAGAGAAGCTCCAAATTT+GGG 0.387893 6_2:+9039624 Msa0908050:CDS
AGAAGCTTCTTCTCAAACTT+CGG 0.390161 6_2:+9036905 Msa0908050:CDS
GATGGTGGGCGGAAGAAATC+TGG 0.391672 6_2:+9037470 Msa0908050:CDS
CATGGTCCTGCTGGAAAACT+TGG 0.396911 6_2:+9036651 Msa0908050:five_prime_UTR
TTGAAGGAAAATCGAAGTAT+TGG 0.398720 6_2:+9039420 Msa0908050:intron
TCTCAAACTTCGGGAATTCA+AGG 0.401052 6_2:+9036915 Msa0908050:CDS
AAGATCATAAAGAAACGGTT+AGG 0.401718 6_2:+9039261 Msa0908050:CDS
ATGGGAGTGGGGCTTTGGTG+TGG 0.403694 6_2:+9038638 Msa0908050:CDS
GAAACATCTAACTTTCTTGT+TGG 0.406772 6_2:+9037530 Msa0908050:CDS
AGTTGAAGAGATTTCATCCT+TGG 0.407816 6_2:+9038387 Msa0908050:CDS
TTGCAGAAGGAACATGGATA+TGG 0.411356 6_2:+9036854 Msa0908050:exon
TCCAAGATCTCTATCTTGTT+CGG 0.412993 6_2:-9038676 None:intergenic
GAGAATGCTGTGATTTCAAC+AGG 0.413499 6_2:-9038567 None:intergenic
ATTCTTCTTGCTTATTCTGT+AGG 0.413613 6_2:-9038006 None:intergenic
ATGGAGATAGCAGGCAGTCT+AGG 0.416300 6_2:+9038983 Msa0908050:CDS
TGGGAGTGGGGCTTTGGTGT+GGG 0.416858 6_2:+9038639 Msa0908050:CDS
GACCATAGAAGTTGAATTCA+TGG 0.416866 6_2:-9038308 None:intergenic
GTTGGTGCCTATGAAAGGTC+TGG 0.427384 6_2:+9037569 Msa0908050:CDS
CTACTCTCTCTTAAAGCCTC+CGG 0.428080 6_2:-9039650 None:intergenic
ACCGAACAAGATAGAGATCT+TGG 0.430477 6_2:+9038675 Msa0908050:CDS
CGGTATCTTAATATTCTGAT+AGG 0.430748 6_2:-9039105 None:intergenic
GGCTCAGGTGGATTATGACT+TGG 0.431718 6_2:-9036602 None:intergenic
GTAAGTTCGTCCTTTGTCTC+AGG 0.433915 6_2:+9038280 Msa0908050:CDS
CTTTCATGGGAATGGCAACT+AGG 0.434347 6_2:+9036556 Msa0908050:five_prime_UTR
ACCAGAAAAGGAAGAACAAC+AGG 0.436180 6_2:+9038344 Msa0908050:CDS
CGGCATACTATTTCAGGTGT+TGG 0.436533 6_2:+9038931 Msa0908050:CDS
TTCTTCTTGCTTATTCTGTA+GGG 0.437355 6_2:-9038005 None:intergenic
AACGAGTCCTCCAAGTTTGT+TGG 0.440986 6_2:-9036768 None:intergenic
AAAACCTGTTGCAAAAGAAA+TGG 0.442456 6_2:+9038804 Msa0908050:CDS
TTATTTGATGGCTGAAATAT+GGG 0.442567 6_2:-9039468 None:intergenic
TGGAGATAGCAGGCAGTCTA+GGG 0.443867 6_2:+9038984 Msa0908050:CDS
CATTCTGATTCAGAAGATAG+AGG 0.444890 6_2:+9037073 Msa0908050:CDS
AAGCTCCAAATTTGGGAATC+CGG 0.450441 6_2:+9039631 Msa0908050:CDS
AGGACCCTCTGTTCCAGAAT+AGG 0.450478 6_2:+9036576 Msa0908050:five_prime_UTR
TTCAGCTGATAGCCGTGAAC+AGG 0.453699 6_2:+9037643 Msa0908050:CDS
ATTTCAGGTGTTGGAATGGT+GGG 0.455191 6_2:+9038940 Msa0908050:CDS
CTGGCAATTCCACGTAGATC+TGG 0.459852 6_2:+9036624 Msa0908050:five_prime_UTR
TCTGAATCAGCAACAGCATT+GGG 0.460211 6_2:+9038037 Msa0908050:CDS
GCAAGGAAGTTCACAACAAA+TGG 0.460737 6_2:+9038831 Msa0908050:CDS
AAATAGTATGCCGAGTTATG+TGG 0.462490 6_2:-9038921 None:intergenic
TGTGTCGAAAGAGATGATTC+TGG 0.462818 6_2:+9038886 Msa0908050:CDS
TAAGCAACTGCAGGTGGATG+AGG 0.469806 6_2:+9037775 Msa0908050:CDS
TAAGCAACTGCAGGTGGATG+AGG 0.469806 6_2:+9037871 Msa0908050:CDS
ACCTGCTGATCACTCTTTGT+AGG 0.471129 6_2:-9038736 None:intergenic
AAGAAGAACTCTACATGGTC+TGG 0.473297 6_2:-9036713 None:intergenic
TCCTTCTGCAATCATTCTCC+GGG 0.474077 6_2:-9036842 None:intergenic
CGCACTTTCTGACGCTCCAT+CGG 0.475633 6_2:-9039125 None:intergenic
AGTCATCTGTAAACCAGAAA+AGG 0.477366 6_2:+9038332 Msa0908050:CDS
TACGTGGAATTGCCAGGCTC+AGG 0.478280 6_2:-9036617 None:intergenic
GGAAGACAGAGAGTTAGATC+AGG 0.478674 6_2:+9038450 Msa0908050:CDS
AATCCAGCTGCTCGTGGAGT+TGG 0.481047 6_2:+9037239 Msa0908050:CDS
TCTAACTCTCTGTCTTCCCT+GGG 0.481552 6_2:-9038445 None:intergenic
TACTTCATTCGTAACAATGC+TGG 0.481770 6_2:-9038260 None:intergenic
ATAGAACCCAGACCTTTCAT+AGG 0.481941 6_2:-9037576 None:intergenic
GCACCAACTCCACGAGCAGC+TGG 0.485204 6_2:-9037242 None:intergenic
AACTTTATCAGGTACACAGC+TGG 0.485345 6_2:+9037508 Msa0908050:CDS
GCCAATGACGCTAGTAAACC+TGG 0.487592 6_2:+9039179 Msa0908050:CDS
GTCTCAAAGCAGAGAAGAAT+AGG 0.488677 6_2:+9038130 Msa0908050:CDS
TACTATTTCAGGTGTTGGAA+TGG 0.489031 6_2:+9038936 Msa0908050:CDS
TGAACGAGGTTTCCTTTCAT+GGG 0.492057 6_2:+9036543 Msa0908050:five_prime_UTR
TCTGGTGGACATGGTCCTGC+TGG 0.492271 6_2:+9036642 Msa0908050:five_prime_UTR
CAGATCTACGTGGAATTGCC+AGG 0.493071 6_2:-9036623 None:intergenic
TTCTGAATCAGCAACAGCAT+TGG 0.493907 6_2:+9038036 Msa0908050:CDS
ACGCAGGCGTGCGGAAGTTG+TGG 0.496097 6_2:+9037946 Msa0908050:CDS
TTGGTGCCTATGAAAGGTCT+GGG 0.497201 6_2:+9037570 Msa0908050:CDS
GAGGTTTCCTTTCATGGGAA+TGG 0.498584 6_2:+9036548 Msa0908050:five_prime_UTR
TCAGAGACTGATTGGCTGCA+AGG 0.501689 6_2:-9039591 None:intergenic
CTTCTGAATCAGAATGGAAT+GGG 0.502064 6_2:-9037066 None:intergenic
CAGTTGCTTAGTCTGTTGCT+TGG 0.502202 6_2:-9037762 None:intergenic
CAGTTGCTTAGTCTGTTGCT+TGG 0.502202 6_2:-9037858 None:intergenic
TGTAAAGCATCAGTGGCATC+AGG 0.505652 6_2:-9038091 None:intergenic
GCAGAGAAATTCCATGGGAG+TGG 0.508166 6_2:+9038625 Msa0908050:CDS
GCTCAGGTGGATTATGACTT+GGG 0.511046 6_2:-9036601 None:intergenic
TGGAATGGTGGGTTCTGTCA+TGG 0.514249 6_2:+9038951 Msa0908050:CDS
GAAAGCTGAGAATGACACTA+TGG 0.515221 6_2:+9038219 Msa0908050:CDS
GGCGGTATCAGGAGTATGAC+TGG 0.516622 6_2:-9036692 None:intergenic
TTTCACACTGGTGGCCATGC+GGG 0.519681 6_2:+9037158 Msa0908050:CDS
AGTCATAATCCACCTGAGCC+TGG 0.520405 6_2:+9036605 Msa0908050:five_prime_UTR
TATTTCAGGTGTTGGAATGG+TGG 0.520521 6_2:+9038939 Msa0908050:CDS
CTCTTCTACTAAAAGTAAAG+AGG 0.521131 6_2:+9037121 Msa0908050:CDS
AGGCTTTAAATGCAAAAGCC+AGG 0.521477 6_2:+9037093 Msa0908050:CDS
TACAAAAGATCATAAAGAAA+CGG 0.521958 6_2:+9039256 Msa0908050:CDS
AGCTTTCGGGGAAGCTGAGG+CGG 0.523214 6_2:-9038203 None:intergenic
TCCTACAAAGAGTGATCAGC+AGG 0.524714 6_2:+9038735 Msa0908050:CDS
TCTTCTGAATCAGAATGGAA+TGG 0.526127 6_2:-9037067 None:intergenic
AGACAAGCAGAGAAATTCCA+TGG 0.527180 6_2:+9038619 Msa0908050:CDS
GTGTATGCATTACCTGTTCA+CGG 0.527597 6_2:-9037655 None:intergenic
TGGCTGCAAGGTTGTGCCAC+AGG 0.529899 6_2:-9039579 None:intergenic
ACACCAAAGCCCCACTCCCA+TGG 0.529910 6_2:-9038636 None:intergenic
GGAAAACTTGGCATCAGAGC+CGG 0.533627 6_2:+9036663 Msa0908050:five_prime_UTR
TGAGGTCAGAGGAGGGACGC+AGG 0.534321 6_2:+9037930 Msa0908050:CDS
CAGAGAAATTCCATGGGAGT+GGG 0.537512 6_2:+9038626 Msa0908050:CDS
TTTCGGGGAAGCTGAGGCGG+TGG 0.539210 6_2:-9038200 None:intergenic
CTCAGCTTTCGGGGAAGCTG+AGG 0.539233 6_2:-9038206 None:intergenic
TCTGGATTGTTTAAGCCACC+AGG 0.539298 6_2:-9039197 None:intergenic
TTGCACAGGCAAATTTCTCA+TGG 0.539620 6_2:+9037395 Msa0908050:intron
AAATGAACCAACAAACTTGG+AGG 0.540546 6_2:+9036761 Msa0908050:five_prime_UTR
TGCTTAAGAAGAACTCTACA+TGG 0.540761 6_2:-9036718 None:intergenic
CTTTCGACACATTTATCCGT+AGG 0.542560 6_2:-9038874 None:intergenic
TTTATCATTTCCAGATGACC+TGG 0.543244 6_2:+9039539 Msa0908050:CDS
AGATCATAAAGAAACGGTTA+GGG 0.543428 6_2:+9039262 Msa0908050:CDS
CTCTATCTTCTGAATCAGAA+TGG 0.546582 6_2:-9037072 None:intergenic
GGTTCCTATTCTGGAACAGA+GGG 0.546682 6_2:-9036580 None:intergenic
TCAGTGACAAGGGTTCTCTC+AGG 0.546997 6_2:-9037209 None:intergenic
CATGGGTAAGCCTGAGACAA+AGG 0.547680 6_2:-9038290 None:intergenic
ACCATAGAAGTTGAATTCAT+GGG 0.549541 6_2:-9038307 None:intergenic
AGGCGTGCGGAAGTTGTGGA+AGG 0.550155 6_2:+9037950 Msa0908050:CDS
AATAGTATGCCGAGTTATGT+GGG 0.550379 6_2:-9038920 None:intergenic
CACGAGCTTCATTTCCCGCA+TGG 0.550385 6_2:-9037172 None:intergenic
GGCTTTAAATGCAAAAGCCA+GGG 0.552882 6_2:+9037094 Msa0908050:CDS
GTGGAATTGCCAGGCTCAGG+TGG 0.557217 6_2:-9036614 None:intergenic
GGGTTCCTATTCTGGAACAG+AGG 0.559609 6_2:-9036581 None:intergenic
CCACGTAGATCTGGTGGACA+TGG 0.559845 6_2:+9036633 Msa0908050:five_prime_UTR
TATCAGTTGGTGCCTATGAA+AGG 0.562408 6_2:+9037564 Msa0908050:CDS
CAGCCATCAAATAATCATAG+AGG 0.564045 6_2:+9039477 Msa0908050:CDS
AGAGATGATTCTGGTTCTCA+AGG 0.565447 6_2:+9038895 Msa0908050:CDS
CAACAGCATTGGGAAAATCA+GGG 0.565653 6_2:+9038047 Msa0908050:CDS
TGCAGTTGGTAATGCAGCCA+AGG 0.568126 6_2:-9038404 None:intergenic
GAATGATTGCAGAAGGAACA+TGG 0.568511 6_2:+9036848 Msa0908050:exon
AAGTGAGAAAAGTAAAATTG+AGG 0.570425 6_2:+9038705 Msa0908050:CDS
TCTTCTTGCTTATTCTGTAG+GGG 0.571027 6_2:-9038004 None:intergenic
CTCGATACTCAAGATGCTGA+TGG 0.572237 6_2:+9037452 Msa0908050:CDS
AGAAACGGTTAGGGAAAGGC+GGG 0.572581 6_2:+9039271 Msa0908050:CDS
TTAGTAGAACAGCTACATCC+AGG 0.573204 6_2:+9037300 Msa0908050:CDS
CGATGGAGCGTCAGAAAGTG+CGG 0.573722 6_2:+9039126 Msa0908050:CDS
GGAGTATGACTGGATTCTAC+CGG 0.574997 6_2:-9036682 None:intergenic
TCCCTCACATTGGCATATGA+CGG 0.575293 6_2:-9036801 None:intergenic
CTAGTTGCCATTCCCATGAA+AGG 0.577530 6_2:-9036555 None:intergenic
GATACTCAAGATGCTGATGG+TGG 0.578415 6_2:+9037455 Msa0908050:CDS
GCTATCAGCTGAATCAGATA+AGG 0.579431 6_2:-9037633 None:intergenic
GAGAGCTAGACTCCTTGTCC+AGG 0.580983 6_2:-9039557 None:intergenic
ATCATTAGTGAGGTCAGAGG+AGG 0.581433 6_2:+9037823 Msa0908050:CDS
GGCGAGCATCAGATATCAGT+TGG 0.582492 6_2:+9037551 Msa0908050:CDS
ATCTCTAGTGAGGTCAGAGG+AGG 0.585263 6_2:+9037922 Msa0908050:CDS
TAGGATGCCAAGAAACATGC+AGG 0.587048 6_2:+9038591 Msa0908050:CDS
CTCTGTTGAAAATAAACCCA+GGG 0.589965 6_2:+9038429 Msa0908050:CDS
ATAAAGAAACGGTTAGGGAA+AGG 0.592872 6_2:+9039267 Msa0908050:CDS
GCCAAATCTCTTGAAAGCAT+AGG 0.594938 6_2:+9036957 Msa0908050:CDS
AGAGGAGGGACGCAGGCGTG+CGG 0.595816 6_2:+9037937 Msa0908050:CDS
CTACTAAAAGTAAAGAGGAG+AGG 0.596230 6_2:+9037126 Msa0908050:CDS
AGAAATAAGTTTCACACTGG+TGG 0.597206 6_2:+9037149 Msa0908050:CDS
AAGATCTCTATCTTGTTCGG+TGG 0.598053 6_2:-9038673 None:intergenic
ATCCGTCATATGCCAATGTG+AGG 0.598696 6_2:+9036799 Msa0908050:five_prime_UTR
TCCCGGAGAATGATTGCAGA+AGG 0.599640 6_2:+9036841 Msa0908050:five_prime_UTR
GCGGGAAATGAAGCTCGTGC+CGG 0.604962 6_2:+9037176 Msa0908050:CDS
ATCAGTCTCTGAGAAGAGCA+AGG 0.606077 6_2:+9039602 Msa0908050:CDS
ATTCTCTTTCACGCCTCATG+TGG 0.606084 6_2:-9037601 None:intergenic
TCAGAATATTAAGATACCGA+TGG 0.606495 6_2:+9039109 Msa0908050:CDS
GAAGCAATCATCAGAAGCGA+AGG 0.607220 6_2:+9037429 Msa0908050:CDS
TTGAGCCTGTAAAGCATCAG+TGG 0.607227 6_2:-9038098 None:intergenic
GCAATTCCACGTAGATCTGG+TGG 0.607456 6_2:+9036627 Msa0908050:five_prime_UTR
ATCAGAATGGAATGGGCAGA+CGG 0.608105 6_2:-9037059 None:intergenic
TAAATCTCTAGTGAGGTCAG+AGG 0.608972 6_2:+9037919 Msa0908050:CDS
GAAGACAGAGAGTTAGATCA+GGG 0.608973 6_2:+9038451 Msa0908050:CDS
GCAACTGCAGGTGGATGAGG+AGG 0.609790 6_2:+9037874 Msa0908050:CDS
ATGCTAGATGGAGCAGAGCA+TGG 0.610855 6_2:+9039074 Msa0908050:intron
ACAGACTAAGCAACTGCAGG+TGG 0.613117 6_2:+9037769 Msa0908050:CDS
ACAGACTAAGCAACTGCAGG+TGG 0.613117 6_2:+9037865 Msa0908050:CDS
AGAGAAATTCCATGGGAGTG+GGG 0.615602 6_2:+9038627 Msa0908050:CDS
TGCAGGTGGATGAGGAGGAG+CGG 0.616145 6_2:+9037879 Msa0908050:CDS
GGTGTAGCTTCTAATACACT+AGG 0.618963 6_2:+9037023 Msa0908050:CDS
GGCGTGCGGAAGTTGTGGAA+GGG 0.619184 6_2:+9037951 Msa0908050:CDS
ATACTCAAGATGCTGATGGT+GGG 0.619250 6_2:+9037456 Msa0908050:CDS
GCAACAGACTAAGCAACTGC+AGG 0.619560 6_2:+9037766 Msa0908050:CDS
GCAACAGACTAAGCAACTGC+AGG 0.619560 6_2:+9037862 Msa0908050:CDS
AACTGCAGGTGGATGAGGAG+CGG 0.620644 6_2:+9037780 Msa0908050:CDS
CTCAAGATGCTGATGGTGGG+CGG 0.620889 6_2:+9037459 Msa0908050:CDS
GTTTCACACTGGTGGCCATG+CGG 0.626015 6_2:+9037157 Msa0908050:CDS
TCTCTAGTGAGGTCAGAGGA+GGG 0.626825 6_2:+9037923 Msa0908050:CDS
TAAATCATTAGTGAGGTCAG+AGG 0.628134 6_2:+9037820 Msa0908050:CDS
TCAGTCTCTGAGAAGAGCAA+GGG 0.628530 6_2:+9039603 Msa0908050:CDS
CTCCAAATTTGGGAATCCGG+AGG 0.632415 6_2:+9039634 Msa0908050:CDS
TCCGTCATATGCCAATGTGA+GGG 0.635380 6_2:+9036800 Msa0908050:five_prime_UTR
GGAATGGGCAGACGGTCTTG+AGG 0.636104 6_2:-9037051 None:intergenic
GCAAAAGAAATGGCTCAGCA+AGG 0.637798 6_2:+9038814 Msa0908050:CDS
AAGAAACGGTTAGGGAAAGG+CGG 0.640111 6_2:+9039270 Msa0908050:CDS
TCATTAGTGAGGTCAGAGGA+GGG 0.640120 6_2:+9037824 Msa0908050:CDS
GGAAATGATAAACTGACATG+AGG 0.640956 6_2:-9039528 None:intergenic
GTGCGGATTTCTGAAACAAG+AGG 0.643622 6_2:+9039143 Msa0908050:CDS
AACAGCATTGGGAAAATCAG+GGG 0.645379 6_2:+9038048 Msa0908050:CDS
GACAAGCAGAGAAATTCCAT+GGG 0.651347 6_2:+9038620 Msa0908050:CDS
TTAAGGAGGACAAGTGCTCG+TGG 0.652548 6_2:+9036879 Msa0908050:CDS
CAAGGAGTCTAGCTCTCCTG+TGG 0.652992 6_2:+9039563 Msa0908050:CDS
AAGAACTCTACATGGTCTGG+CGG 0.654925 6_2:-9036710 None:intergenic
ATAGTATGCCGAGTTATGTG+GGG 0.659149 6_2:-9038919 None:intergenic
AGTGTCATTCTCAGCTTTCG+GGG 0.659524 6_2:-9038215 None:intergenic
CTGGGTTCTATAGCCACATG+AGG 0.660610 6_2:+9037588 Msa0908050:CDS
ATTTCCAGATGACCTGGACA+AGG 0.665178 6_2:+9039545 Msa0908050:CDS
AGGAGAAATAAGTTTCACAC+TGG 0.666377 6_2:+9037146 Msa0908050:CDS
TGAAATCACAGCATTCTCGT+AGG 0.670526 6_2:+9038572 Msa0908050:CDS
GCTCTGTTGAAAATAAACCC+AGG 0.682015 6_2:+9038428 Msa0908050:CDS
ACATGGATATGGATTTAAGG+AGG 0.683091 6_2:+9036865 Msa0908050:exon
TAGTATGCCGAGTTATGTGG+GGG 0.693637 6_2:-9038918 None:intergenic
GGAGATAGCAGGCAGTCTAG+GGG 0.696014 6_2:+9038985 Msa0908050:CDS
TCTCTCAGGAGACACAACAC+CGG 0.706502 6_2:-9037195 None:intergenic
CCATGTCCACCAGATCTACG+TGG 0.729445 6_2:-9036633 None:intergenic
TAGTCGACAGAAGGGCACAG+AGG 0.738211 6_2:+9039301 Msa0908050:CDS
AATGACGCTAGTAAACCTGG+TGG 0.810666 6_2:+9039182 Msa0908050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGCTTAATTTAAAAAATAAG+AGG + chr6_2:9038758-9038777 Msa0908050:CDS 15.0%
!! GCTTAATTTAAAAAATAAGA+GGG + chr6_2:9038759-9038778 Msa0908050:CDS 15.0%
!!! AATTTGATAATTTTTCGGAA+AGG + chr6_2:9036991-9037010 Msa0908050:CDS 20.0%
!! TTTGTAATAGAAAAAGAAAC+CGG - chr6_2:9039242-9039261 None:intergenic 20.0%
!! TACAAAAGATCATAAAGAAA+CGG + chr6_2:9039256-9039275 Msa0908050:CDS 20.0%
! TAAGCAAATAACAAGTTTGA+TGG + chr6_2:9036735-9036754 Msa0908050:five_prime_UTR 25.0%
! AAAAAATGAACCAACAAACT+TGG + chr6_2:9036758-9036777 Msa0908050:five_prime_UTR 25.0%
!!! TAATTTTTCGGAAAGGAAAT+TGG + chr6_2:9036998-9037017 Msa0908050:CDS 25.0%
!!! ATTTTTAACTTCAGTGACAA+GGG - chr6_2:9037222-9037241 None:intergenic 25.0%
! ACAAGTAGTATGTACAAAAA+TGG - chr6_2:9037680-9037699 None:intergenic 25.0%
! AAAAAGCTAAATCATTAGTG+AGG + chr6_2:9037813-9037832 Msa0908050:CDS 25.0%
!!! AATATTTTTGCTCTGAATAC+TGG - chr6_2:9038513-9038532 None:intergenic 25.0%
! AAGTGAGAAAAGTAAAATTG+AGG + chr6_2:9038705-9038724 Msa0908050:CDS 25.0%
!! TTATTTGATGGCTGAAATAT+GGG - chr6_2:9039471-9039490 None:intergenic 25.0%
!! ATTATTTGATGGCTGAAATA+TGG - chr6_2:9039472-9039491 None:intergenic 25.0%
! TTTCCTCTATGATTATTTGA+TGG - chr6_2:9039483-9039502 None:intergenic 25.0%
! AGGAAATAGATCAAAGAAAA+AGG + chr6_2:9039497-9039516 Msa0908050:CDS 25.0%
! AAATAGATCAAAGAAAAAGG+AGG + chr6_2:9039500-9039519 Msa0908050:CDS 25.0%
TATTGTACTTCTAATGAACG+AGG + chr6_2:9036529-9036548 Msa0908050:five_prime_UTR 30.0%
CTCTTCTACTAAAAGTAAAG+AGG + chr6_2:9037121-9037140 Msa0908050:CDS 30.0%
!!! GATTTTTAACTTCAGTGACA+AGG - chr6_2:9037223-9037242 None:intergenic 30.0%
! CAGTTGATATCAAGAAGTAA+TGG - chr6_2:9037330-9037349 None:intergenic 30.0%
TAATTGTGGTTCATTTATCG+TGG + chr6_2:9037353-9037372 Msa0908050:intron 30.0%
AGAGATTCTTCAACTTTATC+AGG + chr6_2:9037497-9037516 Msa0908050:CDS 30.0%
GAAACATCTAACTTTCTTGT+TGG + chr6_2:9037530-9037549 Msa0908050:CDS 30.0%
!!! CGCTGAAGATTTTAAAATTG+TGG - chr6_2:9037723-9037742 None:intergenic 30.0%
AAAAAGCTAAATCTCTAGTG+AGG + chr6_2:9037912-9037931 Msa0908050:CDS 30.0%
TTCTTCTTGCTTATTCTGTA+GGG - chr6_2:9038008-9038027 None:intergenic 30.0%
ATTCTTCTTGCTTATTCTGT+AGG - chr6_2:9038009-9038028 None:intergenic 30.0%
ACCATAGAAGTTGAATTCAT+GGG - chr6_2:9038310-9038329 None:intergenic 30.0%
CAGGTTATTCTTTCTACTAT+AGG - chr6_2:9038551-9038570 None:intergenic 30.0%
AAAAAATAAGAGGGCTGAAA+TGG + chr6_2:9038768-9038787 Msa0908050:CDS 30.0%
! ATTTCTTTTGCAACAGGTTT+TGG - chr6_2:9038805-9038824 None:intergenic 30.0%
AAAACCTGTTGCAAAAGAAA+TGG + chr6_2:9038804-9038823 Msa0908050:CDS 30.0%
TCTGTCATGGAATCTAAAAA+TGG + chr6_2:9038964-9038983 Msa0908050:CDS 30.0%
AATCTAAAAATGGAGATAGC+AGG + chr6_2:9038974-9038993 Msa0908050:CDS 30.0%
CGGTATCTTAATATTCTGAT+AGG - chr6_2:9039108-9039127 None:intergenic 30.0%
TCAGAATATTAAGATACCGA+TGG + chr6_2:9039109-9039128 Msa0908050:CDS 30.0%
AAGATCATAAAGAAACGGTT+AGG + chr6_2:9039261-9039280 Msa0908050:CDS 30.0%
AGATCATAAAGAAACGGTTA+GGG + chr6_2:9039262-9039281 Msa0908050:CDS 30.0%
! CATTTTTCTTCTGATCAACA+TGG - chr6_2:9039331-9039350 None:intergenic 30.0%
!! TTCAAAACAGCATTGATATC+TGG - chr6_2:9039405-9039424 None:intergenic 30.0%
!!! AGATATCAATGCTGTTTTGA+AGG + chr6_2:9039404-9039423 Msa0908050:intron 30.0%
TTGAAGGAAAATCGAAGTAT+TGG + chr6_2:9039420-9039439 Msa0908050:intron 30.0%
TGCTTAAGAAGAACTCTACA+TGG - chr6_2:9036721-9036740 None:intergenic 35.0%
AAATGAACCAACAAACTTGG+AGG + chr6_2:9036761-9036780 Msa0908050:five_prime_UTR 35.0%
GGAACATGGATATGGATTTA+AGG + chr6_2:9036862-9036881 Msa0908050:exon 35.0%
ACATGGATATGGATTTAAGG+AGG + chr6_2:9036865-9036884 Msa0908050:exon 35.0%
AGAAGCTTCTTCTCAAACTT+CGG + chr6_2:9036905-9036924 Msa0908050:CDS 35.0%
TCCTATGCTTTCAAGAGATT+TGG - chr6_2:9036961-9036980 None:intergenic 35.0%
! TTTTCGGAAAGGAAATTGGA+TGG + chr6_2:9037002-9037021 Msa0908050:CDS 35.0%
CTTCTGAATCAGAATGGAAT+GGG - chr6_2:9037069-9037088 None:intergenic 35.0%
TCTTCTGAATCAGAATGGAA+TGG - chr6_2:9037070-9037089 None:intergenic 35.0%
CTCTATCTTCTGAATCAGAA+TGG - chr6_2:9037075-9037094 None:intergenic 35.0%
CATTCTGATTCAGAAGATAG+AGG + chr6_2:9037073-9037092 Msa0908050:CDS 35.0%
! TTTAGTAGAAGAGTTTTCCC+TGG - chr6_2:9037114-9037133 None:intergenic 35.0%
CTACTAAAAGTAAAGAGGAG+AGG + chr6_2:9037126-9037145 Msa0908050:CDS 35.0%
AGGAGAAATAAGTTTCACAC+TGG + chr6_2:9037146-9037165 Msa0908050:CDS 35.0%
AGAAATAAGTTTCACACTGG+TGG + chr6_2:9037149-9037168 Msa0908050:CDS 35.0%
GATATCAACTGCTCTAATTG+TGG + chr6_2:9037339-9037358 Msa0908050:intron 35.0%
TAAATCATTAGTGAGGTCAG+AGG + chr6_2:9037820-9037839 Msa0908050:CDS 35.0%
TCTTCTTGCTTATTCTGTAG+GGG - chr6_2:9038007-9038026 None:intergenic 35.0%
! ATAGTGTCATTCTCAGCTTT+CGG - chr6_2:9038220-9038239 None:intergenic 35.0%
TACTTCATTCGTAACAATGC+TGG - chr6_2:9038263-9038282 None:intergenic 35.0%
ACCCATGAATTCAACTTCTA+TGG + chr6_2:9038306-9038325 Msa0908050:CDS 35.0%
GACCATAGAAGTTGAATTCA+TGG - chr6_2:9038311-9038330 None:intergenic 35.0%
AGTCATCTGTAAACCAGAAA+AGG + chr6_2:9038332-9038351 Msa0908050:CDS 35.0%
AAAGGAAGAACAACAGGAAT+AGG + chr6_2:9038350-9038369 Msa0908050:CDS 35.0%
AGTTGAAGAGATTTCATCCT+TGG + chr6_2:9038387-9038406 Msa0908050:CDS 35.0%
CTCTGTTGAAAATAAACCCA+GGG + chr6_2:9038429-9038448 Msa0908050:CDS 35.0%
! GAATCTTTTGACAAGGATGT+TGG - chr6_2:9038487-9038506 None:intergenic 35.0%
!! CTGGTTTGAATCTTTTGACA+AGG - chr6_2:9038494-9038513 None:intergenic 35.0%
CTATTAACCTGCATGTTTCT+TGG - chr6_2:9038601-9038620 None:intergenic 35.0%
TCCAAGATCTCTATCTTGTT+CGG - chr6_2:9038679-9038698 None:intergenic 35.0%
AATAGTATGCCGAGTTATGT+GGG - chr6_2:9038923-9038942 None:intergenic 35.0%
AAATAGTATGCCGAGTTATG+TGG - chr6_2:9038924-9038943 None:intergenic 35.0%
ATAACTCGGCATACTATTTC+AGG + chr6_2:9038925-9038944 Msa0908050:CDS 35.0%
!! TACTATTTCAGGTGTTGGAA+TGG + chr6_2:9038936-9038955 Msa0908050:CDS 35.0%
ATAAAGAAACGGTTAGGGAA+AGG + chr6_2:9039267-9039286 Msa0908050:CDS 35.0%
AGAAAAATGCTGCAGATACA+AGG + chr6_2:9039342-9039361 Msa0908050:intron 35.0%
CAGCCATCAAATAATCATAG+AGG + chr6_2:9039477-9039496 Msa0908050:CDS 35.0%
GGAAATGATAAACTGACATG+AGG - chr6_2:9039531-9039550 None:intergenic 35.0%
TTTATCATTTCCAGATGACC+TGG + chr6_2:9039539-9039558 Msa0908050:CDS 35.0%
ATGAACGAGGTTTCCTTTCA+TGG + chr6_2:9036542-9036561 Msa0908050:five_prime_UTR 40.0%
TGAACGAGGTTTCCTTTCAT+GGG + chr6_2:9036543-9036562 Msa0908050:five_prime_UTR 40.0%
! TATGACTTGGGTTCCTATTC+TGG - chr6_2:9036592-9036611 None:intergenic 40.0%
AAGAAGAACTCTACATGGTC+TGG - chr6_2:9036716-9036735 None:intergenic 40.0%
CCAACCAAAAATTCTTGTCC+CGG + chr6_2:9036824-9036843 Msa0908050:five_prime_UTR 40.0%
! TTCTCCGGGACAAGAATTTT+TGG - chr6_2:9036831-9036850 None:intergenic 40.0%
TTCCTTCTGCAATCATTCTC+CGG - chr6_2:9036846-9036865 None:intergenic 40.0%
GAATGATTGCAGAAGGAACA+TGG + chr6_2:9036848-9036867 Msa0908050:exon 40.0%
TTGCAGAAGGAACATGGATA+TGG + chr6_2:9036854-9036873 Msa0908050:exon 40.0%
GAAGCTTCTTCTCAAACTTC+GGG + chr6_2:9036906-9036925 Msa0908050:CDS 40.0%
TCTCAAACTTCGGGAATTCA+AGG + chr6_2:9036915-9036934 Msa0908050:CDS 40.0%
! GCCAAATCTCTTGAAAGCAT+AGG + chr6_2:9036957-9036976 Msa0908050:CDS 40.0%
GGTGTAGCTTCTAATACACT+AGG + chr6_2:9037023-9037042 Msa0908050:CDS 40.0%
!! AGGCTTTAAATGCAAAAGCC+AGG + chr6_2:9037093-9037112 Msa0908050:CDS 40.0%
!! GGCTTTAAATGCAAAAGCCA+GGG + chr6_2:9037094-9037113 Msa0908050:CDS 40.0%
TTAGTAGAACAGCTACATCC+AGG + chr6_2:9037300-9037319 Msa0908050:CDS 40.0%
GTATTGAAATGCTCTTGCAC+AGG + chr6_2:9037381-9037400 Msa0908050:intron 40.0%
TTGCACAGGCAAATTTCTCA+TGG + chr6_2:9037395-9037414 Msa0908050:intron 40.0%
ATACTCAAGATGCTGATGGT+GGG + chr6_2:9037456-9037475 Msa0908050:CDS 40.0%
AACTTTATCAGGTACACAGC+TGG + chr6_2:9037508-9037527 Msa0908050:CDS 40.0%
! TATCAGTTGGTGCCTATGAA+AGG + chr6_2:9037564-9037583 Msa0908050:CDS 40.0%
ATAGAACCCAGACCTTTCAT+AGG - chr6_2:9037579-9037598 None:intergenic 40.0%
GCTATCAGCTGAATCAGATA+AGG - chr6_2:9037636-9037655 None:intergenic 40.0%
GTGTATGCATTACCTGTTCA+CGG - chr6_2:9037658-9037677 None:intergenic 40.0%
! GCTTGGACAACACTTTTGTT+TGG - chr6_2:9037748-9037767 None:intergenic 40.0%
TAAATCTCTAGTGAGGTCAG+AGG + chr6_2:9037919-9037938 Msa0908050:CDS 40.0%
TTCTGAATCAGCAACAGCAT+TGG + chr6_2:9038036-9038055 Msa0908050:CDS 40.0%
TCTGAATCAGCAACAGCATT+GGG + chr6_2:9038037-9038056 Msa0908050:CDS 40.0%
! CAACAGCATTGGGAAAATCA+GGG + chr6_2:9038047-9038066 Msa0908050:CDS 40.0%
! AACAGCATTGGGAAAATCAG+GGG + chr6_2:9038048-9038067 Msa0908050:CDS 40.0%
GTCTCAAAGCAGAGAAGAAT+AGG + chr6_2:9038130-9038149 Msa0908050:CDS 40.0%
! TAGTGTCATTCTCAGCTTTC+GGG - chr6_2:9038219-9038238 None:intergenic 40.0%
GAAAGCTGAGAATGACACTA+TGG + chr6_2:9038219-9038238 Msa0908050:CDS 40.0%
ACCAGAAAAGGAAGAACAAC+AGG + chr6_2:9038344-9038363 Msa0908050:CDS 40.0%
! TCCTGTTGTTCTTCCTTTTC+TGG - chr6_2:9038348-9038367 None:intergenic 40.0%
! TTTTCAACAGAGCTTGCAGT+TGG - chr6_2:9038421-9038440 None:intergenic 40.0%
GCTCTGTTGAAAATAAACCC+AGG + chr6_2:9038428-9038447 Msa0908050:CDS 40.0%
GAAGACAGAGAGTTAGATCA+GGG + chr6_2:9038451-9038470 Msa0908050:CDS 40.0%
GAGAATGCTGTGATTTCAAC+AGG - chr6_2:9038570-9038589 None:intergenic 40.0%
TGAAATCACAGCATTCTCGT+AGG + chr6_2:9038572-9038591 Msa0908050:CDS 40.0%
AGACAAGCAGAGAAATTCCA+TGG + chr6_2:9038619-9038638 Msa0908050:CDS 40.0%
GACAAGCAGAGAAATTCCAT+GGG + chr6_2:9038620-9038639 Msa0908050:CDS 40.0%
! ATCTTGTTCGGTGGTTTAAC+AGG - chr6_2:9038667-9038686 None:intergenic 40.0%
AAGATCTCTATCTTGTTCGG+TGG - chr6_2:9038676-9038695 None:intergenic 40.0%
ACCGAACAAGATAGAGATCT+TGG + chr6_2:9038675-9038694 Msa0908050:CDS 40.0%
! TGAGCCATTTCTTTTGCAAC+AGG - chr6_2:9038811-9038830 None:intergenic 40.0%
GCAAGGAAGTTCACAACAAA+TGG + chr6_2:9038831-9038850 Msa0908050:CDS 40.0%
AATGGTGTCCTCAAAAAGTC+AGG + chr6_2:9038849-9038868 Msa0908050:CDS 40.0%
CTCAAAAAGTCAGGTTCCTA+CGG + chr6_2:9038858-9038877 Msa0908050:CDS 40.0%
CTTTCGACACATTTATCCGT+AGG - chr6_2:9038877-9038896 None:intergenic 40.0%
TGTGTCGAAAGAGATGATTC+TGG + chr6_2:9038886-9038905 Msa0908050:CDS 40.0%
!! AGAGATGATTCTGGTTCTCA+AGG + chr6_2:9038895-9038914 Msa0908050:CDS 40.0%
ATAGTATGCCGAGTTATGTG+GGG - chr6_2:9038922-9038941 None:intergenic 40.0%
!! TATTTCAGGTGTTGGAATGG+TGG + chr6_2:9038939-9038958 Msa0908050:CDS 40.0%
!! ATTTCAGGTGTTGGAATGGT+GGG + chr6_2:9038940-9038959 Msa0908050:CDS 40.0%
! ACAGCTGAAGCATGATTTTC+TGG - chr6_2:9039218-9039237 None:intergenic 40.0%
AAATCATGCTTCAGCTGTTC+CGG + chr6_2:9039220-9039239 Msa0908050:CDS 40.0%
! GTTCCTTTTAGTCGACAGAA+GGG + chr6_2:9039293-9039312 Msa0908050:CDS 40.0%
ATATCTGGTTGATTGTGCAC+AGG - chr6_2:9039390-9039409 None:intergenic 40.0%
GGTAGAGAAGCTCCAAATTT+GGG + chr6_2:9039624-9039643 Msa0908050:CDS 40.0%
AAGCTCCAAATTTGGGAATC+CGG + chr6_2:9039631-9039650 Msa0908050:CDS 40.0%
GAGGTTTCCTTTCATGGGAA+TGG + chr6_2:9036548-9036567 Msa0908050:five_prime_UTR 45.0%
CTAGTTGCCATTCCCATGAA+AGG - chr6_2:9036558-9036577 None:intergenic 45.0%
CTTTCATGGGAATGGCAACT+AGG + chr6_2:9036556-9036575 Msa0908050:five_prime_UTR 45.0%
!! GGTTCCTATTCTGGAACAGA+GGG - chr6_2:9036583-9036602 None:intergenic 45.0%
!! GCTCAGGTGGATTATGACTT+GGG - chr6_2:9036604-9036623 None:intergenic 45.0%
GGAGTATGACTGGATTCTAC+CGG - chr6_2:9036685-9036704 None:intergenic 45.0%
AAGAACTCTACATGGTCTGG+CGG - chr6_2:9036713-9036732 None:intergenic 45.0%
AACGAGTCCTCCAAGTTTGT+TGG - chr6_2:9036771-9036790 None:intergenic 45.0%
ATCCGTCATATGCCAATGTG+AGG + chr6_2:9036799-9036818 Msa0908050:five_prime_UTR 45.0%
TCCGTCATATGCCAATGTGA+GGG + chr6_2:9036800-9036819 Msa0908050:five_prime_UTR 45.0%
TCCCTCACATTGGCATATGA+CGG - chr6_2:9036804-9036823 None:intergenic 45.0%
!! TTTTGGTTGGTCCCTCACAT+TGG - chr6_2:9036814-9036833 None:intergenic 45.0%
!!! CCGGGACAAGAATTTTTGGT+TGG - chr6_2:9036827-9036846 None:intergenic 45.0%
TCCTTCTGCAATCATTCTCC+GGG - chr6_2:9036845-9036864 None:intergenic 45.0%
ATCAGAATGGAATGGGCAGA+CGG - chr6_2:9037062-9037081 None:intergenic 45.0%
GTTAAAAATCCAGCTGCTCG+TGG + chr6_2:9037233-9037252 Msa0908050:CDS 45.0%
TAGAACAGCTACATCCAGGT+TGG + chr6_2:9037304-9037323 Msa0908050:intron 45.0%
TCAAGAAGTAATGGCCAACC+TGG - chr6_2:9037321-9037340 None:intergenic 45.0%
TCGCTTCTGATGATTGCTTC+TGG - chr6_2:9037429-9037448 None:intergenic 45.0%
GAAGCAATCATCAGAAGCGA+AGG + chr6_2:9037429-9037448 Msa0908050:CDS 45.0%
CTCGATACTCAAGATGCTGA+TGG + chr6_2:9037452-9037471 Msa0908050:CDS 45.0%
GATACTCAAGATGCTGATGG+TGG + chr6_2:9037455-9037474 Msa0908050:CDS 45.0%
! TTGGTGCCTATGAAAGGTCT+GGG + chr6_2:9037570-9037589 Msa0908050:CDS 45.0%
ATTCTCTTTCACGCCTCATG+TGG - chr6_2:9037604-9037623 None:intergenic 45.0%
CAGTTGCTTAGTCTGTTGCT+TGG - chr6_2:9037765-9037784 None:intergenic 45.0%
ATCATTAGTGAGGTCAGAGG+AGG + chr6_2:9037823-9037842 Msa0908050:CDS 45.0%
TCATTAGTGAGGTCAGAGGA+GGG + chr6_2:9037824-9037843 Msa0908050:CDS 45.0%
CAGTTGCTTAGTCTGTTGCT+TGG - chr6_2:9037765-9037784 None:intergenic 45.0%
! GCAACAGCATTGGGAAAATC+AGG + chr6_2:9038046-9038065 Msa0908050:CDS 45.0%
! TGTAAAGCATCAGTGGCATC+AGG - chr6_2:9038094-9038113 None:intergenic 45.0%
TGATGCCACTGATGCTTTAC+AGG + chr6_2:9038093-9038112 Msa0908050:CDS 45.0%
! TTGAGCCTGTAAAGCATCAG+TGG - chr6_2:9038101-9038120 None:intergenic 45.0%
! AGTGTCATTCTCAGCTTTCG+GGG - chr6_2:9038218-9038237 None:intergenic 45.0%
GTAAGTTCGTCCTTTGTCTC+AGG + chr6_2:9038280-9038299 Msa0908050:CDS 45.0%
TCTAACTCTCTGTCTTCCCT+GGG - chr6_2:9038448-9038467 None:intergenic 45.0%
ATCTAACTCTCTGTCTTCCC+TGG - chr6_2:9038449-9038468 None:intergenic 45.0%
GGAAGACAGAGAGTTAGATC+AGG + chr6_2:9038450-9038469 Msa0908050:CDS 45.0%
TAGGATGCCAAGAAACATGC+AGG + chr6_2:9038591-9038610 Msa0908050:CDS 45.0%
CAGAGAAATTCCATGGGAGT+GGG + chr6_2:9038626-9038645 Msa0908050:CDS 45.0%
AGAGAAATTCCATGGGAGTG+GGG + chr6_2:9038627-9038646 Msa0908050:CDS 45.0%
TCCTACAAAGAGTGATCAGC+AGG + chr6_2:9038735-9038754 Msa0908050:CDS 45.0%
ACCTGCTGATCACTCTTTGT+AGG - chr6_2:9038739-9038758 None:intergenic 45.0%
GCAAAAGAAATGGCTCAGCA+AGG + chr6_2:9038814-9038833 Msa0908050:CDS 45.0%
! CGTAGGAACCTGACTTTTTG+AGG - chr6_2:9038860-9038879 None:intergenic 45.0%
TAGTATGCCGAGTTATGTGG+GGG - chr6_2:9038921-9038940 None:intergenic 45.0%
! CGGCATACTATTTCAGGTGT+TGG + chr6_2:9038931-9038950 Msa0908050:CDS 45.0%
! AGGGAAAAGCACATGGATCA+TGG + chr6_2:9039012-9039031 Msa0908050:intron 45.0%
! GAAAAGCACATGGATCATGG+CGG + chr6_2:9039015-9039034 Msa0908050:intron 45.0%
GATGTGCATGACATGCTAGA+TGG + chr6_2:9039062-9039081 Msa0908050:intron 45.0%
!! GTGCGGATTTCTGAAACAAG+AGG + chr6_2:9039143-9039162 Msa0908050:CDS 45.0%
ACCAGGTTTACTAGCGTCAT+TGG - chr6_2:9039183-9039202 None:intergenic 45.0%
AATGACGCTAGTAAACCTGG+TGG + chr6_2:9039182-9039201 Msa0908050:CDS 45.0%
TCTGGATTGTTTAAGCCACC+AGG - chr6_2:9039200-9039219 None:intergenic 45.0%
AAGAAACGGTTAGGGAAAGG+CGG + chr6_2:9039270-9039289 Msa0908050:CDS 45.0%
! GGTTCCTTTTAGTCGACAGA+AGG + chr6_2:9039292-9039311 Msa0908050:CDS 45.0%
ATTTCCAGATGACCTGGACA+AGG + chr6_2:9039545-9039564 Msa0908050:CDS 45.0%
TGCTCTTCTCAGAGACTGAT+TGG - chr6_2:9039602-9039621 None:intergenic 45.0%
! ATCAGTCTCTGAGAAGAGCA+AGG + chr6_2:9039602-9039621 Msa0908050:CDS 45.0%
! TCAGTCTCTGAGAAGAGCAA+GGG + chr6_2:9039603-9039622 Msa0908050:CDS 45.0%
GGGTAGAGAAGCTCCAAATT+TGG + chr6_2:9039623-9039642 Msa0908050:CDS 45.0%
!!! AAATAAATTTGATAATTTTT+CGG + chr6_2:9036986-9037005 Msa0908050:CDS 5.0%
AGGACCCTCTGTTCCAGAAT+AGG + chr6_2:9036576-9036595 Msa0908050:five_prime_UTR 50.0%
!! GGGTTCCTATTCTGGAACAG+AGG - chr6_2:9036584-9036603 None:intergenic 50.0%
!! GGCTCAGGTGGATTATGACT+TGG - chr6_2:9036605-9036624 None:intergenic 50.0%
AGTCATAATCCACCTGAGCC+TGG + chr6_2:9036605-9036624 Msa0908050:five_prime_UTR 50.0%
CAGATCTACGTGGAATTGCC+AGG - chr6_2:9036626-9036645 None:intergenic 50.0%
CTGGCAATTCCACGTAGATC+TGG + chr6_2:9036624-9036643 Msa0908050:five_prime_UTR 50.0%
GCAATTCCACGTAGATCTGG+TGG + chr6_2:9036627-9036646 Msa0908050:five_prime_UTR 50.0%
CATGGTCCTGCTGGAAAACT+TGG + chr6_2:9036651-9036670 Msa0908050:five_prime_UTR 50.0%
! CTGATGCCAAGTTTTCCAGC+AGG - chr6_2:9036660-9036679 None:intergenic 50.0%
GGAAAACTTGGCATCAGAGC+CGG + chr6_2:9036663-9036682 Msa0908050:five_prime_UTR 50.0%
TCCCGGAGAATGATTGCAGA+AGG + chr6_2:9036841-9036860 Msa0908050:five_prime_UTR 50.0%
TTAAGGAGGACAAGTGCTCG+TGG + chr6_2:9036879-9036898 Msa0908050:CDS 50.0%
TCTCTCAGGAGACACAACAC+CGG - chr6_2:9037198-9037217 None:intergenic 50.0%
TCAGTGACAAGGGTTCTCTC+AGG - chr6_2:9037212-9037231 None:intergenic 50.0%
GGCGAGCATCAGATATCAGT+TGG + chr6_2:9037551-9037570 Msa0908050:CDS 50.0%
! GTTGGTGCCTATGAAAGGTC+TGG + chr6_2:9037569-9037588 Msa0908050:CDS 50.0%
CTGGGTTCTATAGCCACATG+AGG + chr6_2:9037588-9037607 Msa0908050:CDS 50.0%
TTCAGCTGATAGCCGTGAAC+AGG + chr6_2:9037643-9037662 Msa0908050:CDS 50.0%
GCAACAGACTAAGCAACTGC+AGG + chr6_2:9037766-9037785 Msa0908050:CDS 50.0%
ACAGACTAAGCAACTGCAGG+TGG + chr6_2:9037769-9037788 Msa0908050:CDS 50.0%
TAAGCAACTGCAGGTGGATG+AGG + chr6_2:9037775-9037794 Msa0908050:CDS 50.0%
GCAACAGACTAAGCAACTGC+AGG + chr6_2:9037766-9037785 Msa0908050:CDS 50.0%
ACAGACTAAGCAACTGCAGG+TGG + chr6_2:9037769-9037788 Msa0908050:CDS 50.0%
TAAGCAACTGCAGGTGGATG+AGG + chr6_2:9037775-9037794 Msa0908050:CDS 50.0%
ATCTCTAGTGAGGTCAGAGG+AGG + chr6_2:9037922-9037941 Msa0908050:CDS 50.0%
TCTCTAGTGAGGTCAGAGGA+GGG + chr6_2:9037923-9037942 Msa0908050:CDS 50.0%
CATGGGTAAGCCTGAGACAA+AGG - chr6_2:9038293-9038312 None:intergenic 50.0%
!! TGCAGTTGGTAATGCAGCCA+AGG - chr6_2:9038407-9038426 None:intergenic 50.0%
GCAGAGAAATTCCATGGGAG+TGG + chr6_2:9038625-9038644 Msa0908050:CDS 50.0%
!! TGGAATGGTGGGTTCTGTCA+TGG + chr6_2:9038951-9038970 Msa0908050:CDS 50.0%
ATGGAGATAGCAGGCAGTCT+AGG + chr6_2:9038983-9039002 Msa0908050:CDS 50.0%
TGGAGATAGCAGGCAGTCTA+GGG + chr6_2:9038984-9039003 Msa0908050:CDS 50.0%
! GGGTTGAAGGGAAAAGCACA+TGG + chr6_2:9039005-9039024 Msa0908050:intron 50.0%
ATGCTAGATGGAGCAGAGCA+TGG + chr6_2:9039074-9039093 Msa0908050:intron 50.0%
GCCAATGACGCTAGTAAACC+TGG + chr6_2:9039179-9039198 Msa0908050:CDS 50.0%
AGAAACGGTTAGGGAAAGGC+GGG + chr6_2:9039271-9039290 Msa0908050:CDS 50.0%
! GTGCCCTTCTGTCGACTAAA+AGG - chr6_2:9039299-9039318 None:intergenic 50.0%
! TCAGAGACTGATTGGCTGCA+AGG - chr6_2:9039594-9039613 None:intergenic 50.0%
CTCCAAATTTGGGAATCCGG+AGG + chr6_2:9039634-9039653 Msa0908050:CDS 50.0%
AGCCTCCGGATTCCCAAATT+TGG - chr6_2:9039639-9039658 None:intergenic 50.0%
TACGTGGAATTGCCAGGCTC+AGG - chr6_2:9036620-9036639 None:intergenic 55.0%
CCATGTCCACCAGATCTACG+TGG - chr6_2:9036636-9036655 None:intergenic 55.0%
! CCACGTAGATCTGGTGGACA+TGG + chr6_2:9036633-9036652 Msa0908050:five_prime_UTR 55.0%
! GGCGGTATCAGGAGTATGAC+TGG - chr6_2:9036695-9036714 None:intergenic 55.0%
CTACATGGTCTGGCGGTATC+AGG - chr6_2:9036706-9036725 None:intergenic 55.0%
GTTTCACACTGGTGGCCATG+CGG + chr6_2:9037157-9037176 Msa0908050:CDS 55.0%
TTTCACACTGGTGGCCATGC+GGG + chr6_2:9037158-9037177 Msa0908050:CDS 55.0%
CACGAGCTTCATTTCCCGCA+TGG - chr6_2:9037175-9037194 None:intergenic 55.0%
AATCCAGCTGCTCGTGGAGT+TGG + chr6_2:9037239-9037258 Msa0908050:CDS 55.0%
!!! GCTCGTGGAGTTGGTGCTTT+TGG + chr6_2:9037248-9037267 Msa0908050:CDS 55.0%
!!! CGTGGAGTTGGTGCTTTTGG+AGG + chr6_2:9037251-9037270 Msa0908050:CDS 55.0%
!! CTCAAGATGCTGATGGTGGG+CGG + chr6_2:9037459-9037478 Msa0908050:CDS 55.0%
!! GATGGTGGGCGGAAGAAATC+TGG + chr6_2:9037470-9037489 Msa0908050:CDS 55.0%
AACTGCAGGTGGATGAGGAG+CGG + chr6_2:9037780-9037799 Msa0908050:CDS 55.0%
ATTCCATGGGAGTGGGGCTT+TGG + chr6_2:9038633-9038652 Msa0908050:CDS 55.0%
CTCAAGGCCCCCACATAACT+CGG + chr6_2:9038911-9038930 Msa0908050:CDS 55.0%
GGAGATAGCAGGCAGTCTAG+GGG + chr6_2:9038985-9039004 Msa0908050:CDS 55.0%
CAGGCAGTCTAGGGGTTGAA+GGG + chr6_2:9038993-9039012 Msa0908050:intron 55.0%
CACATGGATCATGGCGGCTA+AGG + chr6_2:9039021-9039040 Msa0908050:intron 55.0%
CGCACTTTCTGACGCTCCAT+CGG - chr6_2:9039128-9039147 None:intergenic 55.0%
! CGATGGAGCGTCAGAAAGTG+CGG + chr6_2:9039126-9039145 Msa0908050:CDS 55.0%
! TAGTCGACAGAAGGGCACAG+AGG + chr6_2:9039301-9039320 Msa0908050:CDS 55.0%
GACTCCTTGTCCAGGTCATC+TGG - chr6_2:9039552-9039571 None:intergenic 55.0%
GAGAGCTAGACTCCTTGTCC+AGG - chr6_2:9039560-9039579 None:intergenic 55.0%
!! CAAGGAGTCTAGCTCTCCTG+TGG + chr6_2:9039563-9039582 Msa0908050:CDS 55.0%
GTGGAATTGCCAGGCTCAGG+TGG - chr6_2:9036617-9036636 None:intergenic 60.0%
! TCTGGTGGACATGGTCCTGC+TGG + chr6_2:9036642-9036661 Msa0908050:five_prime_UTR 60.0%
GGAATGGGCAGACGGTCTTG+AGG - chr6_2:9037054-9037073 None:intergenic 60.0%
GCGGGAAATGAAGCTCGTGC+CGG + chr6_2:9037176-9037195 Msa0908050:CDS 60.0%
GCAACTGCAGGTGGATGAGG+AGG + chr6_2:9037778-9037797 Msa0908050:CDS 60.0%
TGCAGGTGGATGAGGAGGAG+CGG + chr6_2:9037879-9037898 Msa0908050:CDS 60.0%
AGGCGTGCGGAAGTTGTGGA+AGG + chr6_2:9037950-9037969 Msa0908050:CDS 60.0%
GGCGTGCGGAAGTTGTGGAA+GGG + chr6_2:9037951-9037970 Msa0908050:CDS 60.0%
AGCTTTCGGGGAAGCTGAGG+CGG - chr6_2:9038206-9038225 None:intergenic 60.0%
CTCAGCTTTCGGGGAAGCTG+AGG - chr6_2:9038209-9038228 None:intergenic 60.0%
ACACCAAAGCCCCACTCCCA+TGG - chr6_2:9038639-9038658 None:intergenic 60.0%
! ATGGGAGTGGGGCTTTGGTG+TGG + chr6_2:9038638-9038657 Msa0908050:CDS 60.0%
! TGGGAGTGGGGCTTTGGTGT+GGG + chr6_2:9038639-9038658 Msa0908050:CDS 60.0%
GCAGGCAGTCTAGGGGTTGA+AGG + chr6_2:9038992-9039011 Msa0908050:intron 60.0%
TGGCTGCAAGGTTGTGCCAC+AGG - chr6_2:9039582-9039601 None:intergenic 60.0%
GCACCAACTCCACGAGCAGC+TGG - chr6_2:9037245-9037264 None:intergenic 65.0%
TGAGGTCAGAGGAGGGACGC+AGG + chr6_2:9037930-9037949 Msa0908050:CDS 65.0%
ACGCAGGCGTGCGGAAGTTG+TGG + chr6_2:9037946-9037965 Msa0908050:CDS 65.0%
TTTCGGGGAAGCTGAGGCGG+TGG - chr6_2:9038203-9038222 None:intergenic 65.0%
AGAGGAGGGACGCAGGCGTG+CGG + chr6_2:9037937-9037956 Msa0908050:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 9036527 9039662 9036527 ID=Msa0908050;Name=Msa0908050
chr6_2 mRNA 9036527 9039662 9036527 ID=Msa0908050-mRNA-1;Parent=Msa0908050;Name=Msa0908050-mRNA-1;_AED=0.13;_eAED=0.15;_QI=340|0.33|0.25|1|1|1|4|0|845
chr6_2 exon 9036527 9037321 9036527 ID=Msa0908050-mRNA-1:exon:2212;Parent=Msa0908050-mRNA-1
chr6_2 exon 9037403 9039006 9037403 ID=Msa0908050-mRNA-1:exon:2213;Parent=Msa0908050-mRNA-1
chr6_2 exon 9039081 9039322 9039081 ID=Msa0908050-mRNA-1:exon:2214;Parent=Msa0908050-mRNA-1
chr6_2 exon 9039426 9039662 9039426 ID=Msa0908050-mRNA-1:exon:2215;Parent=Msa0908050-mRNA-1
chr6_2 five_prime_UTR 9036527 9036866 9036527 ID=Msa0908050-mRNA-1:five_prime_utr;Parent=Msa0908050-mRNA-1
chr6_2 CDS 9036867 9037321 9036867 ID=Msa0908050-mRNA-1:cds;Parent=Msa0908050-mRNA-1
chr6_2 CDS 9037403 9039006 9037403 ID=Msa0908050-mRNA-1:cds;Parent=Msa0908050-mRNA-1
chr6_2 CDS 9039081 9039322 9039081 ID=Msa0908050-mRNA-1:cds;Parent=Msa0908050-mRNA-1
chr6_2 CDS 9039426 9039662 9039426 ID=Msa0908050-mRNA-1:cds;Parent=Msa0908050-mRNA-1
Gene Sequence

>Msa0908050

ATGGATATGGATTTAAGGAGGACAAGTGCTCGTGGCAAAGAAGCTTCTTCTCAAACTTCGGGAATTCAAGGATCTATTTCTGTCAATAATGCCAAATCTCTTGAAAGCATAGGAAACTTAAATAAATTTGATAATTTTTCGGAAAGGAAATTGGATGGTGTAGCTTCTAATACACTAGGAATTGCCTCAAGACCGTCTGCCCATTCCATTCTGATTCAGAAGATAGAGGCTTTAAATGCAAAAGCCAGGGAAAACTCTTCTACTAAAAGTAAAGAGGAGAGGAGAAATAAGTTTCACACTGGTGGCCATGCGGGAAATGAAGCTCGTGCCGGTGTTGTGTCTCCTGAGAGAACCCTTGTCACTGAAGTTAAAAATCCAGCTGCTCGTGGAGTTGGTGCTTTTGGAGGCGAAAAGAATTTTGAATCATCATCTATTAGTAGAACAGCTACATCCAGGCAAATTTCTCATGGCATGCAAACCAGAAGCAATCATCAGAAGCGAAGGCTCGATACTCAAGATGCTGATGGTGGGCGGAAGAAATCTGGAGTCAGAGATTCTTCAACTTTATCAGGTACACAGCTGGAAACATCTAACTTTCTTGTTGGCGAGCATCAGATATCAGTTGGTGCCTATGAAAGGTCTGGGTTCTATAGCCACATGAGGCGTGAAAGAGAATCTATACAAACCTTATCTGATTCAGCTGATAGCCGTGAACAGGTAATGCATACACCATTTTTGTACATACTACTTGTTATGCTTGTATTTAACTCTGCCACAATTTTAAAATCTTCAGCGTGCCAAACAAAAGTGTTGTCCAAGCAACAGACTAAGCAACTGCAGGTGGATGAGGAGCGGACTAAAAAGCAAAAAGCTAAATCATTAGTGAGGTCAGAGGAGGGAAACGTGTTGTCCAAGCAACAGACTAAGCAACTGCAGGTGGATGAGGAGGAGCGGACTAAAAAGCAAAAAGCTAAATCTCTAGTGAGGTCAGAGGAGGGACGCAGGCGTGCGGAAGTTGTGGAAGGGTCAATGCAGAAAGTTTATGCTGCTAATTCTCCCCTACAGAATAAGCAAGAAGAATTTCAACATTCTGAATCAGCAACAGCATTGGGAAAATCAGGGGCAGCTAATTCTTCTGAAATGCCTGATGCCACTGATGCTTTACAGGCTCAAAACAATGTTGTCTCAAAGCAGAGAAGAATAGGTTATAAACAAAAGCATAATCGTTCTCTAAGTAAGACTTCAAATGTTTCCACCGCCTCAGCTTCCCCGAAAGCTGAGAATGACACTATGGCGTATGTTAATGTATCTTCCAGCATTGTTACGAATGAAGTAAGTTCGTCCTTTGTCTCAGGCTTACCCATGAATTCAACTTCTATGGTCGAGTCATCTGTAAACCAGAAAAGGAAGAACAACAGGAATAGGAAAAACAAACAGAAAGTTGAAGAGATTTCATCCTTGGCTGCATTACCAACTGCAAGCTCTGTTGAAAATAAACCCAGGGAAGACAGAGAGTTAGATCAGGGCTCACTTCAGCCAACATCCTTGTCAAAAGATTCAAACCAGTATTCAGAGCAAAAATATTCAGAAAATGAAGAATCCTATAGTAGAAAGAATAACCTGTTGAAATCACAGCATTCTCGTAGGATGCCAAGAAACATGCAGGTTAATAGACAAGCAGAGAAATTCCATGGGAGTGGGGCTTTGGTGTGGGCACCTGTTAAACCACCGAACAAGATAGAGATCTTGGATGAATCAAGTGAGAAAAGTAAAATTGAGGCAATTGTTCCTACAAAGAGTGATCAGCAGGTGCTTAATTTAAAAAATAAGAGGGCTGAAATGGAGCGATATGTTCCAAAACCTGTTGCAAAAGAAATGGCTCAGCAAGGAAGTTCACAACAAATGGTGTCCTCAAAAAGTCAGGTTCCTACGGATAAATGTGTCGAAAGAGATGATTCTGGTTCTCAAGGCCCCCACATAACTCGGCATACTATTTCAGGTGTTGGAATGGTGGGTTCTGTCATGGAATCTAAAAATGGAGATAGCAGGCAGTCTAGGGATGGAGCAGAGCATGGTTCAAACTCCTATCAGAATATTAAGATACCGATGGAGCGTCAGAAAGTGCGGATTTCTGAAACAAGAGGACAATCGAAGCATGCCAATGACGCTAGTAAACCTGGTGGCTTAAACAATCCAGAAAATCATGCTTCAGCTGTTCCGGTTTCTTTTTCTATTACAAAAGATCATAAAGAAACGGTTAGGGAAAGGCGGGTTCCTTTTAGTCGACAGAAGGGCACAGAGGAAAATCGAAGTATTGGAGAACATGTGTCATCGCACATGCAACCCATATTTCAGCCATCAAATAATCATAGAGGAAATAGATCAAAGAAAAAGGAGGTTACGCCTCATGTCAGTTTATCATTTCCAGATGACCTGGACAAGGAGTCTAGCTCTCCTGTGGCACAACCTTGCAGCCAATCAGTCTCTGAGAAGAGCAAGGGTAGAGAAGCTCCAAATTTGGGAATCCGGAGGCTTTAA
Protein sequence

>Msa0908050

MDMDLRRTSARGKEASSQTSGIQGSISVNNAKSLESIGNLNKFDNFSERKLDGVASNTLGIASRPSAHSILIQKIEALNAKARENSSTKSKEERRNKFHTGGHAGNEARAGVVSPERTLVTEVKNPAARGVGAFGGEKNFESSSISRTATSRQISHGMQTRSNHQKRRLDTQDADGGRKKSGVRDSSTLSGTQLETSNFLVGEHQISVGAYERSGFYSHMRRERESIQTLSDSADSREQVMHTPFLYILLVMLVFNSATILKSSACQTKVLSKQQTKQLQVDEERTKKQKAKSLVRSEEGNVLSKQQTKQLQVDEEERTKKQKAKSLVRSEEGRRRAEVVEGSMQKVYAANSPLQNKQEEFQHSESATALGKSGAANSSEMPDATDALQAQNNVVSKQRRIGYKQKHNRSLSKTSNVSTASASPKAENDTMAYVNVSSSIVTNEVSSSFVSGLPMNSTSMVESSVNQKRKNNRNRKNKQKVEEISSLAALPTASSVENKPREDRELDQGSLQPTSLSKDSNQYSEQKYSENEESYSRKNNLLKSQHSRRMPRNMQVNRQAEKFHGSGALVWAPVKPPNKIEILDESSEKSKIEAIVPTKSDQQVLNLKNKRAEMERYVPKPVAKEMAQQGSSQQMVSSKSQVPTDKCVERDDSGSQGPHITRHTISGVGMVGSVMESKNGDSRQSRDGAEHGSNSYQNIKIPMERQKVRISETRGQSKHANDASKPGGLNNPENHASAVPVSFSITKDHKETVRERRVPFSRQKGTEENRSIGEHVSSHMQPIFQPSNNHRGNRSKKKEVTPHVSLSFPDDLDKESSSPVAQPCSQSVSEKSKGREAPNLGIRRL*