AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0893810

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0893810 MtrunA17_Chr6g0476731 96.966 725 19 1 1 725 1 722 0.0 1436
Msa0893810 MtrunA17_Chr3g0126871 75.744 437 98 4 294 725 148 581 0.0 582
Msa0893810 MtrunA17_Chr4g0076871 64.130 92 30 1 403 494 1 89 7.46e-29 111
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0893810 AT1G33360.1 60.625 640 207 8 69 703 39 638 0.0 731
Msa0893810 AT5G53350.1 72.128 470 123 3 242 708 96 560 0.0 661
Msa0893810 AT5G49840.3 67.696 421 123 5 309 725 197 608 0.0 561
Msa0893810 AT5G49840.3 43.902 82 30 1 91 172 77 142 7.32e-17 85.1
Msa0893810 AT5G49840.1 67.458 421 124 5 309 725 197 608 0.0 559
Msa0893810 AT5G49840.1 43.902 82 30 1 91 172 77 142 7.45e-17 85.1
Msa0893810 AT5G49840.2 70.663 392 111 3 309 696 197 588 0.0 558
Msa0893810 AT5G49840.2 43.902 82 30 1 91 172 77 142 9.60e-17 84.7
Msa0893810 AT5G49840.4 72.112 251 67 2 309 556 197 447 7.10e-116 357
Msa0893810 AT5G49840.4 43.902 82 30 1 91 172 77 142 1.45e-16 83.6

Find 232 sgRNAs with CRISPR-Local

Find 462 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCGGGACCCACATCGAATT+TGG 0.112649 6_1:-78668945 Msa0893810:CDS
GATTGAGTAAGAAGATAAAA+TGG 0.184656 6_1:+78669496 None:intergenic
GCATGGGGAGGGTCTAATTT+AGG 0.185975 6_1:-78668102 Msa0893810:CDS
AATATCAGCCGAGATGTTTC+TGG 0.210145 6_1:-78666302 Msa0893810:CDS
GGTCTCGATAAGTTTGTTAT+TGG 0.223211 6_1:-78668045 Msa0893810:CDS
CAAGGTACATTTGTTGAAAT+TGG 0.223334 6_1:-78668510 Msa0893810:CDS
CAAGATTCTTCTATTGGTTT+TGG 0.233687 6_1:-78665068 Msa0893810:CDS
CTCCTTCTTCAATTCTCAAT+TGG 0.239470 6_1:-78669185 Msa0893810:five_prime_UTR
TTCATTCTTCAATTCTCATT+TGG 0.264576 6_1:-78669338 Msa0893810:five_prime_UTR
AATGCTGGTGGTGGTAATAA+TGG 0.276535 6_1:-78668288 Msa0893810:CDS
GATGAGAAAGATATTGAAAT+TGG 0.279178 6_1:+78669362 None:intergenic
GGTCTCATACCAGAGTTTAT+TGG 0.285611 6_1:-78664564 Msa0893810:CDS
ACTAGGTCGGGTGCAGATTC+AGG 0.291303 6_1:-78667359 Msa0893810:intron
GGAAGAACAACATACCTTCT+TGG 0.313775 6_1:+78668011 None:intergenic
TATAAGCGTGATTTGTGAAA+TGG 0.317938 6_1:+78669388 None:intergenic
CAAAGTAATGGTGGTGATTC+CGG 0.321215 6_1:-78668657 Msa0893810:CDS
TCATTCTTCAATTCTCATTT+GGG 0.323396 6_1:-78669337 Msa0893810:five_prime_UTR
GAGGGTGGTCCGGGCGGTGG+TGG 0.325608 6_1:-78668141 Msa0893810:CDS
CAGGAGGGTGGTCCGGGCGG+TGG 0.331285 6_1:-78668144 Msa0893810:CDS
TTAACTAGAAGGTTTAAATA+TGG 0.331920 6_1:-78668447 Msa0893810:CDS
GGCGGAAACGGCGAAAATTT+AGG 0.338401 6_1:-78668633 Msa0893810:CDS
CTTTCTTCGCTATCATTCTC+AGG 0.339690 6_1:+78663824 None:intergenic
AGGGCCGCAGGAGGGTGGTC+CGG 0.341423 6_1:-78668151 Msa0893810:CDS
AGACGGCAAGATTCTTCTAT+TGG 0.351882 6_1:-78665074 Msa0893810:CDS
AGTAGCTGAATCAGAGTTAC+AGG 0.352303 6_1:-78662723 Msa0893810:CDS
ATGCTGGTGGTGGTAATAAT+GGG 0.352334 6_1:-78668287 Msa0893810:CDS
GGTCCGGGCGGTGGTGGTAA+TGG 0.353545 6_1:-78668135 Msa0893810:CDS
GGTGCAGATTCAGGAATTTC+AGG 0.353959 6_1:-78667350 Msa0893810:CDS
AGTGAGGATTTAGGTCTAAA+TGG 0.356809 6_1:-78668381 Msa0893810:CDS
AAACCGGTTCAACCGCGTTC+AGG 0.357913 6_1:-78668889 Msa0893810:CDS
TAAATGGTAGTGCTAGTAAT+TGG 0.360495 6_1:-78668365 Msa0893810:CDS
ACAATGCCGGCGGGTGGCGG+TGG 0.364775 6_1:-78668820 Msa0893810:CDS
AGAAGGTTTAAATATGGTAT+TGG 0.366946 6_1:-78668441 Msa0893810:CDS
CACCTGGGATTAATGTTGTA+AGG 0.367830 6_1:-78668179 Msa0893810:CDS
GTAAAACTCAATTAACTAGA+AGG 0.367917 6_1:-78668458 Msa0893810:CDS
TCCTTCTTCAATTCTCAATT+GGG 0.368251 6_1:-78669184 Msa0893810:five_prime_UTR
GGCGAAAATTTAGGTTCTAA+TGG 0.372258 6_1:-78668624 Msa0893810:CDS
AGTTCTGATCTTATTGCATA+TGG 0.374394 6_1:-78664585 Msa0893810:CDS
CATCATGGAAGTGAGGATTT+AGG 0.375770 6_1:-78668390 Msa0893810:CDS
TCCACGGGGTGATAACATTC+AGG 0.381577 6_1:-78665486 Msa0893810:intron
CATGGGGAGGGTCTAATTTA+GGG 0.382302 6_1:-78668101 Msa0893810:CDS
CATAAGTTGCTCTTCGGTTA+AGG 0.383500 6_1:+78664512 None:intergenic
GTCGCTTCCTGTCTTAATAT+CGG 0.385991 6_1:+78663632 None:intergenic
GGGCCGCAGGAGGGTGGTCC+GGG 0.386876 6_1:-78668150 Msa0893810:CDS
GGCGGCGGTGGTGGGAATGC+TGG 0.398775 6_1:-78668303 Msa0893810:CDS
TCGCCTGAACGCGGTTGAAC+CGG 0.402699 6_1:+78668886 None:intergenic
AGACCTTTACAAATCTCCTT+TGG 0.403767 6_1:+78668063 None:intergenic
ACCCACATCGAATTTGGTTC+AGG 0.405326 6_1:-78668939 Msa0893810:CDS
TTGTATAACAGAATAGTTAC+TGG 0.405930 6_1:-78662568 Msa0893810:three_prime_UTR
AGCATCATCTTTACTTGAAT+CGG 0.406039 6_1:-78664994 Msa0893810:intron
GGTCTCAGTTCTTACTGAAT+AGG 0.409724 6_1:-78662547 Msa0893810:three_prime_UTR
AATTACAATGGCGGCGGTGG+TGG 0.412821 6_1:-78668312 Msa0893810:CDS
TAGTGTAGCATTGCTAATTC+AGG 0.414197 6_1:-78662496 Msa0893810:three_prime_UTR
TTGTGGATGTTAATGATGTT+TGG 0.416973 6_1:+78669299 None:intergenic
AAAGGATTACCTCTCTGAAA+TGG 0.417863 6_1:+78665206 None:intergenic
GGTTCAGGTAACCGTCGAAC+CGG 0.418230 6_1:-78668924 Msa0893810:CDS
TTCTGGTGAGGGTGTTCAGC+AGG 0.419447 6_1:-78666285 Msa0893810:CDS
ATAACCCGACCCGGAAAATC+CGG 0.421552 6_1:-78668743 Msa0893810:CDS
GGTGATTCCGGCGGCGGAAA+CGG 0.422136 6_1:-78668645 Msa0893810:CDS
TGTCTAGATAGTAAATGTTC+CGG 0.427339 6_1:-78665528 Msa0893810:intron
CCGGCATTGTTTGCCACCTC+CGG 0.428221 6_1:+78668833 None:intergenic
CAAACAATGCCGGCGGGTGG+CGG 0.439337 6_1:-78668823 Msa0893810:CDS
TGTAATGGTGATGTATTATA+CGG 0.440406 6_1:+78668531 None:intergenic
CACCGGTAGGTGGTGGCAAT+GGG 0.440545 6_1:-78668242 Msa0893810:CDS
TTTAACCGATGCCATGTATG+AGG 0.441190 6_1:-78663749 Msa0893810:intron
CCGGGTTCACTTTATTAAAC+CGG 0.441691 6_1:-78668905 Msa0893810:CDS
CCACCGGTAGGTGGTGGCAA+TGG 0.442868 6_1:-78668243 Msa0893810:CDS
ACATTAATCCCAGGTGCAAA+AGG 0.444033 6_1:+78668186 None:intergenic
TCAACAAATGTACCTTGTAA+TGG 0.444954 6_1:+78668516 None:intergenic
GGTAGAGTGAGTAATAATAA+TGG 0.445653 6_1:-78668489 Msa0893810:CDS
CTTCTAATGTTGGTACGAAC+TGG 0.446569 6_1:+78665041 None:intergenic
GGCTGACAAGCTAACTAAGA+TGG 0.447213 6_1:+78664533 None:intergenic
TTGATGGGTCCAACAGGATC+AGG 0.448560 6_1:-78667278 Msa0893810:intron
TGGGGCCGTGGTGGGTCGGA+TGG 0.449326 6_1:-78668774 Msa0893810:CDS
TGTTTACCAAGAGCATGTTT+TGG 0.455263 6_1:+78663975 None:intergenic
ACCGGTGGTGGCCATGTCTC+CGG 0.455689 6_1:+78668258 None:intergenic
TGCCGGCGGGTGGCGGTGGT+CGG 0.456846 6_1:-78668816 Msa0893810:CDS
ATTGAGTAAGAAGATAAAAT+GGG 0.457312 6_1:+78669497 None:intergenic
TCTAATGGTGATGGTGGTGA+TGG 0.460265 6_1:-78668609 Msa0893810:CDS
TCTTCGCGGAGATGGTGCTT+TGG 0.461133 6_1:-78663538 Msa0893810:CDS
CAAGTGGGGCCGTGGTGGGT+CGG 0.461546 6_1:-78668778 Msa0893810:CDS
ATGAATACTTGCCTGTGTTA+AGG 0.462855 6_1:+78667090 None:intergenic
AGAAATTACAATGGCGGCGG+TGG 0.463018 6_1:-78668315 Msa0893810:CDS
GCAGTACCTAGCTAAGATAA+AGG 0.467142 6_1:-78663514 Msa0893810:CDS
ATTACTTTGCATATGACGAT+TGG 0.468868 6_1:+78668671 None:intergenic
GGCGGTGGTGGGAATGCTGG+TGG 0.469456 6_1:-78668300 Msa0893810:CDS
ATAAGCGTGATTTGTGAAAT+GGG 0.474583 6_1:+78669389 None:intergenic
AACTAACCCTTTCGGTAAAG+TGG 0.481023 6_1:+78667549 None:intergenic
AGTTGACAAGATTACTAAGA+AGG 0.483209 6_1:-78666419 Msa0893810:intron
ATAGTAAATGTTCCGGAGAA+AGG 0.485530 6_1:-78665521 Msa0893810:CDS
TGTGTGAGGTAGAGAGAGAG+AGG 0.486504 6_1:+78669438 None:intergenic
TCGCTTCCTGTCTTAATATC+GGG 0.487087 6_1:+78663633 None:intergenic
AGTGTTTATCGGTGAAGAGA+TGG 0.487913 6_1:+78669522 None:intergenic
TGGTGGCAATGGGAATGGTT+TGG 0.489942 6_1:-78668232 Msa0893810:CDS
TGAATCAGAGTTACAGGATA+GGG 0.494926 6_1:-78662717 Msa0893810:CDS
ATTAATGTTGTAAGGGCTAG+AGG 0.496036 6_1:-78668171 Msa0893810:CDS
CCGCAGGAGGGTGGTCCGGG+CGG 0.496809 6_1:-78668147 Msa0893810:CDS
TACCTGCATAAGTTGCTCTT+CGG 0.497540 6_1:+78664506 None:intergenic
TAAAATGGGAGAGTGTTTAT+CGG 0.498413 6_1:+78669511 None:intergenic
TTGCCACCACCTACCGGTGG+TGG 0.499085 6_1:+78668246 None:intergenic
AGTAAAAGAACTAACCCTTT+CGG 0.501191 6_1:+78667541 None:intergenic
GCTGACAAGCTAACTAAGAT+GGG 0.502552 6_1:+78664534 None:intergenic
AAGGAAATGACGTCATTTCG+CGG 0.502799 6_1:-78668963 Msa0893810:CDS
TCACTAACAGCTCCAGGATG+TGG 0.502922 6_1:-78663570 Msa0893810:CDS
CGGTGGTCGGAGTGCAAGAA+AGG 0.505046 6_1:-78668803 Msa0893810:CDS
CCAGGTGCAAAAGGAGGACC+TGG 0.506343 6_1:+78668195 None:intergenic
GGTGGTGGGAATGCTGGTGG+TGG 0.511422 6_1:-78668297 Msa0893810:CDS
TATTCTACCGCTTCTAATGT+TGG 0.512037 6_1:+78665031 None:intergenic
GGTACAAGTGGGGCCGTGGT+GGG 0.513008 6_1:-78668782 Msa0893810:CDS
CCGGAGGTGGCAAACAATGC+CGG 0.513244 6_1:-78668833 Msa0893810:CDS
AGGTACAAGTGGGGCCGTGG+TGG 0.513332 6_1:-78668783 Msa0893810:CDS
ACCATGCCACTTTACCGAAA+GGG 0.513748 6_1:-78667555 Msa0893810:intron
AATGGTGGTGATTCCGGCGG+CGG 0.515429 6_1:-78668651 Msa0893810:CDS
GTTCAGGTAACCGTCGAACC+GGG 0.518609 6_1:-78668923 Msa0893810:CDS
TTGGCTGTACATACTCCTCC+AGG 0.518736 6_1:-78668213 Msa0893810:CDS
CACATCATAGTCGCCGGAGG+TGG 0.519599 6_1:-78668846 Msa0893810:CDS
TATTAAGGCTCTTAAACCCC+TGG 0.520946 6_1:+78663780 None:intergenic
TTTCTTCGCTATCATTCTCA+GGG 0.521770 6_1:+78663825 None:intergenic
TTCCCATTGCCACCACCTAC+CGG 0.522329 6_1:+78668240 None:intergenic
GAAAGGTACAAGTGGGGCCG+TGG 0.522337 6_1:-78668786 Msa0893810:CDS
GTAGGTGGTGGCAATGGGAA+TGG 0.529951 6_1:-78668237 Msa0893810:CDS
CCAGATCAATACCTCATACA+TGG 0.530171 6_1:+78663738 None:intergenic
AATGGTGATGGTGGTGATGG+TGG 0.530330 6_1:-78668606 Msa0893810:CDS
ACAGAACCAAAACATGCTCT+TGG 0.532014 6_1:-78663981 Msa0893810:CDS
AACCGAAGAGCAACTTATGC+AGG 0.532015 6_1:-78664508 Msa0893810:intron
TTACAAATCTCCTTTGGTGA+AGG 0.533110 6_1:+78668069 None:intergenic
AGCCGAGATGTTTCTGGTGA+GGG 0.533599 6_1:-78666296 Msa0893810:CDS
CTGAATCCTTTATCTTAGCT+AGG 0.533656 6_1:+78663508 None:intergenic
TGGTAATAATGGGGAGCCGC+CGG 0.535232 6_1:-78668277 Msa0893810:CDS
TCACCAAAGGAGATTTGTAA+AGG 0.535509 6_1:-78668066 Msa0893810:CDS
ACTATAATGTTACATGCTCA+TGG 0.536473 6_1:+78662673 None:intergenic
GACCCGGAAAATCCGGGCTG+AGG 0.537027 6_1:-78668736 Msa0893810:CDS
CTGTGTTAAGGTTGTAGCAT+CGG 0.538448 6_1:+78667102 None:intergenic
AGTATTAAGAGTGGTCATCA+TGG 0.538727 6_1:-78668405 Msa0893810:CDS
GAGAGTAATAGTATTAAGAG+TGG 0.539828 6_1:-78668414 Msa0893810:CDS
ATGGGGAGCCGCCGGAGACA+TGG 0.542206 6_1:-78668269 Msa0893810:CDS
GTAGGATCACTAACAGCTCC+AGG 0.543291 6_1:-78663576 Msa0893810:CDS
TGGCAAACAATGCCGGCGGG+TGG 0.545347 6_1:-78668826 Msa0893810:CDS
CTCCGACCACCGCCACCCGC+CGG 0.547532 6_1:+78668814 None:intergenic
AGGGCTAGAGGGCCGCAGGA+GGG 0.549216 6_1:-78668159 Msa0893810:CDS
AATTTAGGTTCTAATGGTGA+TGG 0.550448 6_1:-78668618 Msa0893810:CDS
CTGAATCAGAGTTACAGGAT+AGG 0.553897 6_1:-78662718 Msa0893810:CDS
AATCGTCATATGCAAAGTAA+TGG 0.555241 6_1:-78668669 Msa0893810:CDS
AGACAAGTAGAAATGTGAAG+AGG 0.555568 6_1:+78669556 None:intergenic
TAACCCGACCCGGAAAATCC+GGG 0.555787 6_1:-78668742 Msa0893810:CDS
CCGGTTTAATAAAGTGAACC+CGG 0.558513 6_1:+78668905 None:intergenic
ATAAAGTGAACCCGGTTCGA+CGG 0.559005 6_1:+78668913 None:intergenic
AAGGGCTAGAGGGCCGCAGG+AGG 0.560420 6_1:-78668160 Msa0893810:CDS
TGGCCACCACCGGTAGGTGG+TGG 0.561955 6_1:-78668249 Msa0893810:CDS
CACCATGCCACTTTACCGAA+AGG 0.562697 6_1:-78667556 Msa0893810:CDS
ACCCAATTGAGAATTGAAGA+AGG 0.562759 6_1:+78669183 None:intergenic
CAGATTCCCGATATTAAGAC+AGG 0.562888 6_1:-78663639 Msa0893810:CDS
ATTACAATGGCGGCGGTGGT+GGG 0.563135 6_1:-78668311 Msa0893810:CDS
TGGACAAGGTAGAGCCAAGA+AGG 0.565290 6_1:-78668025 Msa0893810:intron
GAAGGATTTGCCTTCACCAA+AGG 0.567287 6_1:-78668079 Msa0893810:CDS
GAAATTTGGATCTATAAGTG+TGG 0.569121 6_1:+78669223 None:intergenic
ACCTGGGATTAATGTTGTAA+GGG 0.569494 6_1:-78668178 Msa0893810:CDS
GTAGCATCGGCAATGACAAA+CGG 0.571154 6_1:+78667115 None:intergenic
AGGTGGCAAACAATGCCGGC+GGG 0.572353 6_1:-78668829 Msa0893810:CDS
TGATTTGTGAAATGGGTTTG+CGG 0.574333 6_1:+78669396 None:intergenic
AAACAGTACAAGAAATTAGT+CGG 0.574698 6_1:-78663957 Msa0893810:CDS
CACCCTCACCAGAAACATCT+CGG 0.574800 6_1:+78666294 None:intergenic
GCCGGAGACATGGCCACCAC+CGG 0.576486 6_1:-78668259 Msa0893810:CDS
AGTAACTATTCTGTTATACA+AGG 0.577182 6_1:+78662570 None:intergenic
CTGAATCACATCATAGTCGC+CGG 0.577628 6_1:-78668852 Msa0893810:CDS
TTGAGAAATTACAATGGCGG+CGG 0.583843 6_1:-78668318 Msa0893810:CDS
GCCCTTACAACATTAATCCC+AGG 0.585045 6_1:+78668177 None:intergenic
ACCCTTTCGGTAAAGTGGCA+TGG 0.587487 6_1:+78667554 None:intergenic
GGGAATCGTCCAATAAACTC+TGG 0.588253 6_1:+78664555 None:intergenic
GAGTGCAAGAAAGGTACAAG+TGG 0.594838 6_1:-78668794 Msa0893810:CDS
GTTGTTGATGAAGAATCAGT+AGG 0.595178 6_1:-78663594 Msa0893810:CDS
GTGTGAGGTAGAGAGAGAGA+GGG 0.595322 6_1:+78669439 None:intergenic
AGCTAAGATAAAGGATTCAG+AGG 0.595722 6_1:-78663505 Msa0893810:intron
CAGCCGAGATGTTTCTGGTG+AGG 0.600057 6_1:-78666297 Msa0893810:CDS
CAATACCTCATACATGGCAT+CGG 0.601448 6_1:+78663744 None:intergenic
AGGAAATGACGTCATTTCGC+GGG 0.601976 6_1:-78668962 Msa0893810:CDS
TCACCATTACCACCACCGCC+CGG 0.602216 6_1:+78668132 None:intergenic
ATGTTCCGGAGAAAGGAGCC+AGG 0.602337 6_1:-78665514 Msa0893810:CDS
CGTCATATGCAAAGTAATGG+TGG 0.604007 6_1:-78668666 Msa0893810:CDS
AGAGTGAGTAATAATAATGG+TGG 0.605589 6_1:-78668486 Msa0893810:CDS
TGATTCTTCATCAACAACTA+CGG 0.607482 6_1:+78663599 None:intergenic
TCTTGAGATGAATCGAGACA+TGG 0.613428 6_1:+78668998 None:intergenic
GTGAGAAGAATGCATGGGGA+GGG 0.615617 6_1:-78668113 Msa0893810:CDS
ACCTGAACCAAATTCGATGT+GGG 0.618453 6_1:+78668938 None:intergenic
CCGCCCGGACCACCCTCCTG+CGG 0.618646 6_1:+78668147 None:intergenic
GTGGACAATTAGCCTCAGCC+CGG 0.619101 6_1:+78668724 None:intergenic
ACATGGCCACCACCGGTAGG+TGG 0.620476 6_1:-78668252 Msa0893810:CDS
TTAGGTTCTAATGGTGATGG+TGG 0.621993 6_1:-78668615 Msa0893810:CDS
TATAATACATCACCATTACA+AGG 0.622701 6_1:-78668528 Msa0893810:CDS
GGGAGGGTCTAATTTAGGGA+AGG 0.625761 6_1:-78668097 Msa0893810:CDS
AATGTTATACCTGATCCTGT+TGG 0.626529 6_1:+78667269 None:intergenic
AGTGCAAGAAAGGTACAAGT+GGG 0.631033 6_1:-78668793 Msa0893810:CDS
GAGTGGTCATCATGGAAGTG+AGG 0.633503 6_1:-78668397 Msa0893810:CDS
GAGTTGAAATCGCCTGAACG+CGG 0.635875 6_1:+78668877 None:intergenic
TCAGTTCTTACTGAATAGGA+AGG 0.636853 6_1:-78662543 Msa0893810:three_prime_UTR
GTAATGGTGAGAAGAATGCA+TGG 0.637507 6_1:-78668119 Msa0893810:CDS
TACCTGAACCAAATTCGATG+TGG 0.639942 6_1:+78668937 None:intergenic
GGGCTGAGGCTAATTGTCCA+CGG 0.640912 6_1:-78668722 Msa0893810:CDS
TATGATTAAGATTGTGTGTG+AGG 0.642789 6_1:+78669424 None:intergenic
GTTCGTACCAACATTAGAAG+CGG 0.643589 6_1:-78665038 Msa0893810:CDS
TTAATGTTGTAAGGGCTAGA+GGG 0.644838 6_1:-78668170 Msa0893810:CDS
TAATGGTGAGAAGAATGCAT+GGG 0.644865 6_1:-78668118 Msa0893810:CDS
CTAACAGCTCCAGGATGTGG+AGG 0.645580 6_1:-78663567 Msa0893810:CDS
GAGACATGGCCACCACCGGT+AGG 0.647018 6_1:-78668255 Msa0893810:CDS
GTGATATGCATAACCCGACC+CGG 0.648968 6_1:-78668752 Msa0893810:CDS
GATAAGTTTGTTATTGGACA+AGG 0.650004 6_1:-78668039 Msa0893810:CDS
TTGGCTTGAAGTGTCAATGT+GGG 0.651884 6_1:-78668346 Msa0893810:CDS
GGTGAGAAGAATGCATGGGG+AGG 0.654081 6_1:-78668114 Msa0893810:CDS
TTAATCCCAGGTGCAAAAGG+AGG 0.655193 6_1:+78668189 None:intergenic
ACTTTGAGAAATTACAATGG+CGG 0.658366 6_1:-78668321 Msa0893810:CDS
CTTGAGATGAATCGAGACAT+GGG 0.664663 6_1:+78668999 None:intergenic
TATCACCATCCGACCCACCA+CGG 0.665482 6_1:+78668769 None:intergenic
CGATGCTACAACCTTAACAC+AGG 0.665547 6_1:-78667101 Msa0893810:intron
ACCTGAATGTTATCACCCCG+TGG 0.667143 6_1:+78665485 None:intergenic
AATGATAGCGAAGAAAGCAA+TGG 0.670703 6_1:-78663818 Msa0893810:CDS
AATGTTGCAGCAGCTCAACA+AGG 0.670896 6_1:-78666460 Msa0893810:CDS
GAGGTGGCAAACAATGCCGG+CGG 0.671349 6_1:-78668830 Msa0893810:CDS
AATACTATATAAGCTACTTG+CGG 0.672585 6_1:-78666893 Msa0893810:intron
CCATTGCCACCACCTACCGG+TGG 0.674449 6_1:+78668243 None:intergenic
TGCTGGTGGTGGTAATAATG+GGG 0.676168 6_1:-78668286 Msa0893810:CDS
CTGACAAGCTAACTAAGATG+GGG 0.678326 6_1:+78664535 None:intergenic
GTAACTATTCTGTTATACAA+GGG 0.682419 6_1:+78662571 None:intergenic
GGTGGTGGCCATGTCTCCGG+CGG 0.683760 6_1:+78668261 None:intergenic
AATGGTGAGAAGAATGCATG+GGG 0.695640 6_1:-78668117 Msa0893810:CDS
AGTAATGGTGGTGATTCCGG+CGG 0.695700 6_1:-78668654 Msa0893810:CDS
GGTGCAAAAGGAGGACCTGG+AGG 0.695787 6_1:+78668198 None:intergenic
AATCACATCATAGTCGCCGG+AGG 0.701574 6_1:-78668849 Msa0893810:CDS
TTCATATCTTTGGAACACCG+TGG 0.701650 6_1:+78668705 None:intergenic
GAAACTTTGAGAAATTACAA+TGG 0.710583 6_1:-78668324 Msa0893810:CDS
GTGCAAGAAAGGTACAAGTG+GGG 0.716514 6_1:-78668792 Msa0893810:CDS
ATTGGCTTGAAGTGTCAATG+TGG 0.726659 6_1:-78668347 Msa0893810:CDS
CAACAACTACGGCGTCAATG+CGG 0.734475 6_1:+78663610 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG - chr6_1:78667645-78667664 Msa0893810:intron 0.0%
!! ATATATATATATATATATAT+GGG - chr6_1:78667644-78667663 Msa0893810:intron 0.0%
!!! ATAACATTTAAAATCTATTA+TGG + chr6_1:78665634-78665653 None:intergenic 10.0%
!!! AAAGTATATTATGATATTTT+GGG + chr6_1:78666325-78666344 None:intergenic 10.0%
!!! AAAAGTATATTATGATATTT+TGG + chr6_1:78666326-78666345 None:intergenic 10.0%
!! AAAATATATGATCAAAAATA+TGG + chr6_1:78669219-78669238 None:intergenic 10.0%
!!! TTTTTTTTATATGAAGTTAA+TGG - chr6_1:78669564-78669583 Msa0893810:five_prime_UTR 10.0%
!!! GTTATAAAAATTGTATCTTT+TGG + chr6_1:78662934-78662953 None:intergenic 15.0%
!!! GTAAGTTTTAATTATACATT+TGG - chr6_1:78664199-78664218 Msa0893810:intron 15.0%
!!! TTTTAATTATACATTTGGAA+AGG - chr6_1:78664204-78664223 Msa0893810:intron 15.0%
!!! ATTTTTACTTATTTTGTCTT+GGG - chr6_1:78664990-78665009 Msa0893810:intron 15.0%
!!! GTTATGATATATATTTTTAC+AGG - chr6_1:78665649-78665668 Msa0893810:intron 15.0%
!!! TTTTTTAATGAAATCTGTTA+TGG - chr6_1:78665800-78665819 Msa0893810:intron 15.0%
!!! TTTTTAATGAAATCTGTTAT+GGG - chr6_1:78665801-78665820 Msa0893810:intron 15.0%
!!! AAATAGTATATTATTTTGCT+TGG - chr6_1:78666069-78666088 Msa0893810:intron 15.0%
!!! AAGTATATTATGATATTTTG+GGG + chr6_1:78666324-78666343 None:intergenic 15.0%
!!! TCTATTTTTTCATATCATTA+TGG - chr6_1:78667268-78667287 Msa0893810:intron 15.0%
!! AACTTGTATTTATATAGATT+TGG + chr6_1:78667775-78667794 None:intergenic 15.0%
!! ATAAATACAAGTTTAATAAC+TGG - chr6_1:78667782-78667801 Msa0893810:intron 15.0%
!! ATTGAGTAAGAAGATAAAAT+GGG + chr6_1:78662491-78662510 None:intergenic 20.0%
!! GAAAAACAAATTCATATCTT+TGG + chr6_1:78663293-78663312 None:intergenic 20.0%
!! TTAACTAGAAGGTTTAAATA+TGG - chr6_1:78663538-78663557 Msa0893810:CDS 20.0%
!! GTATATATATTCTATCGTAT+AGG - chr6_1:78664088-78664107 Msa0893810:intron 20.0%
!! AATTAATGAGGTACAATTAA+AGG + chr6_1:78664347-78664366 None:intergenic 20.0%
!! AATTGTACCTCATTAATTAA+TGG - chr6_1:78664349-78664368 Msa0893810:intron 20.0%
!! ACATAAACCATTAATTAATG+AGG + chr6_1:78664359-78664378 None:intergenic 20.0%
!! ATAAATGTCTGGAAAATTTA+CGG - chr6_1:78664536-78664555 Msa0893810:CDS 20.0%
!!! TCTATTTTATGTGATTGAAA+TGG - chr6_1:78664592-78664611 Msa0893810:CDS 20.0%
!! TAATCTAACTTTCATCATAT+AGG - chr6_1:78664804-78664823 Msa0893810:intron 20.0%
!! AATCTAACTTTCATCATATA+GGG - chr6_1:78664805-78664824 Msa0893810:intron 20.0%
!!! GATTTTTACTTATTTTGTCT+TGG - chr6_1:78664989-78665008 Msa0893810:intron 20.0%
!!! TTATGACAATTTCTAAGATA+CGG + chr6_1:78665364-78665383 None:intergenic 20.0%
!!! ACGATTATTTTTTTCTGTAT+AGG - chr6_1:78665491-78665510 Msa0893810:CDS 20.0%
!! AATAAAAAATCATTGCGTTT+AGG + chr6_1:78666438-78666457 None:intergenic 20.0%
!! ATATAGATGTCTAAACAAAA+CGG + chr6_1:78666559-78666578 None:intergenic 20.0%
!!! AAGAACATTCTTTTTATATG+TGG - chr6_1:78666730-78666749 Msa0893810:intron 20.0%
!!! ATAATATTTTTTCAAGACCA+AGG + chr6_1:78666808-78666827 None:intergenic 20.0%
!!! TTTTATACTCATTTGGAATT+TGG + chr6_1:78667353-78667372 None:intergenic 20.0%
!! AAAAGCAATATAAACAATGA+GGG + chr6_1:78667507-78667526 None:intergenic 20.0%
!! TTCATAGGATTAACAAAATA+TGG - chr6_1:78667569-78667588 Msa0893810:CDS 20.0%
!!! GTATTTATATAGATTTGGTT+AGG + chr6_1:78667770-78667789 None:intergenic 20.0%
!! ATGACAATGAAAATATTGTT+TGG - chr6_1:78667968-78667987 Msa0893810:intron 20.0%
!!! GGTTAAAATGTTTTCTATTA+AGG + chr6_1:78668223-78668242 None:intergenic 20.0%
!!! TTGACTGATTTTTTTTCTTT+TGG - chr6_1:78668525-78668544 Msa0893810:CDS 20.0%
!!! TGACTGATTTTTTTTCTTTT+GGG - chr6_1:78668526-78668545 Msa0893810:CDS 20.0%
!! TTGGGAATGATTATTATAAA+AGG - chr6_1:78668544-78668563 Msa0893810:CDS 20.0%
!! GACTATAATTGAGTAAAAAT+CGG - chr6_1:78668722-78668741 Msa0893810:CDS 20.0%
!!! TACTCTGAAATTTATGTAAA+CGG - chr6_1:78669071-78669090 Msa0893810:five_prime_UTR 20.0%
!!! TTTTTTTCTTAATCTTTTGC+AGG - chr6_1:78669235-78669254 Msa0893810:five_prime_UTR 20.0%
!! GAAAAATTATACACTGAATA+TGG + chr6_1:78669340-78669359 None:intergenic 20.0%
! GATTGAGTAAGAAGATAAAA+TGG + chr6_1:78662492-78662511 None:intergenic 25.0%
! GATGAGAAAGATATTGAAAT+TGG + chr6_1:78662626-78662645 None:intergenic 25.0%
! TTCATTCTTCAATTCTCATT+TGG - chr6_1:78662647-78662666 Msa0893810:three_prime_UTR 25.0%
! TCATTCTTCAATTCTCATTT+GGG - chr6_1:78662648-78662667 Msa0893810:three_prime_UTR 25.0%
!!! GATGTTTTTTTCTTTGTTTG+TGG + chr6_1:78662706-78662725 None:intergenic 25.0%
!! ATCTATAAGTGTGGTTTTTA+TGG + chr6_1:78662756-78662775 None:intergenic 25.0%
! GATGAAAAAGAAGTGAAATT+TGG + chr6_1:78662779-78662798 None:intergenic 25.0%
!! TGTAATGGTGATGTATTATA+CGG + chr6_1:78663457-78663476 None:intergenic 25.0%
! TATAATACATCACCATTACA+AGG - chr6_1:78663457-78663476 Msa0893810:intron 25.0%
! GTAAAACTCAATTAACTAGA+AGG - chr6_1:78663527-78663546 Msa0893810:CDS 25.0%
! AGAAGGTTTAAATATGGTAT+TGG - chr6_1:78663544-78663563 Msa0893810:CDS 25.0%
!! GAAACTTTGAGAAATTACAA+TGG - chr6_1:78663661-78663680 Msa0893810:intron 25.0%
!! TGATAACAGTAAATGGATTT+GGG + chr6_1:78663998-78664017 None:intergenic 25.0%
!! TTGATAACAGTAAATGGATT+TGG + chr6_1:78663999-78664018 None:intergenic 25.0%
! TATATGTGATGATAAATGTC+TGG - chr6_1:78664525-78664544 Msa0893810:CDS 25.0%
!! ATTTTATGTGATTGAAATGG+TGG - chr6_1:78664595-78664614 Msa0893810:intron 25.0%
!! TATGAAATGTTCTGATTTTC+AGG - chr6_1:78665041-78665060 Msa0893810:CDS 25.0%
! AATACTATATAAGCTACTTG+CGG - chr6_1:78665092-78665111 Msa0893810:intron 25.0%
! GCATTATTAAAAATGCTTGA+AGG - chr6_1:78665722-78665741 Msa0893810:intron 25.0%
!!! GCATCAACAATATTTGTTAT+CGG + chr6_1:78666014-78666033 None:intergenic 25.0%
! CAAATATTGTTGATGCATTA+TGG - chr6_1:78666018-78666037 Msa0893810:intron 25.0%
! GCATTATGGTAATTTCAATT+AGG - chr6_1:78666032-78666051 Msa0893810:intron 25.0%
!!! TAGTATATTATTTTGCTTGG+TGG - chr6_1:78666072-78666091 Msa0893810:intron 25.0%
!!! AGTATATTATTTTGCTTGGT+GGG - chr6_1:78666073-78666092 Msa0893810:intron 25.0%
! TATAACTTGAAGCTAGAATT+TGG - chr6_1:78666255-78666274 Msa0893810:intron 25.0%
! GAAATGCATTTCTATTGTTA+TGG - chr6_1:78666643-78666662 Msa0893810:intron 25.0%
!! AACATTCTTTTTATATGTGG+TGG - chr6_1:78666733-78666752 Msa0893810:intron 25.0%
!! TAAATGTTTTACACTCGTAT+TGG - chr6_1:78666843-78666862 Msa0893810:intron 25.0%
! TATCAATCAAATAAACCAGA+CGG - chr6_1:78666894-78666913 Msa0893810:CDS 25.0%
! AGATATAACAATCAACTACA+CGG + chr6_1:78667322-78667341 None:intergenic 25.0%
!! ACACTGTGTTAATAATTTTC+AGG - chr6_1:78667372-78667391 Msa0893810:intron 25.0%
! CAAAAGCAATATAAACAATG+AGG + chr6_1:78667508-78667527 None:intergenic 25.0%
! AAATTAGGAAGAGATATGAT+AGG + chr6_1:78667533-78667552 None:intergenic 25.0%
! ACTAATTGTTCAGAGAAATT+AGG + chr6_1:78667548-78667567 None:intergenic 25.0%
! AAACAGTACAAGAAATTAGT+CGG - chr6_1:78668028-78668047 Msa0893810:CDS 25.0%
! AGTGGGAAAATAATATAGAA+TGG - chr6_1:78669027-78669046 Msa0893810:five_prime_UTR 25.0%
!! CTGTTATTTACAATAGTTCT+AGG - chr6_1:78669193-78669212 Msa0893810:five_prime_UTR 25.0%
! GTAACTATTCTGTTATACAA+GGG + chr6_1:78669417-78669436 None:intergenic 25.0%
! AGTAACTATTCTGTTATACA+AGG + chr6_1:78669418-78669437 None:intergenic 25.0%
! TTGTATAACAGAATAGTTAC+TGG - chr6_1:78669417-78669436 Msa0893810:five_prime_UTR 25.0%
!!! CATATTTCCATTTGTTTTTG+AGG - chr6_1:78669524-78669543 Msa0893810:five_prime_UTR 25.0%
!! TAAAATGGGAGAGTGTTTAT+CGG + chr6_1:78662477-78662496 None:intergenic 30.0%
TATGATTAAGATTGTGTGTG+AGG + chr6_1:78662564-78662583 None:intergenic 30.0%
! ATAAGCGTGATTTGTGAAAT+GGG + chr6_1:78662599-78662618 None:intergenic 30.0%
! TATAAGCGTGATTTGTGAAA+TGG + chr6_1:78662600-78662619 None:intergenic 30.0%
TTGTGGATGTTAATGATGTT+TGG + chr6_1:78662689-78662708 None:intergenic 30.0%
GAAATTTGGATCTATAAGTG+TGG + chr6_1:78662765-78662784 None:intergenic 30.0%
TCCTTCTTCAATTCTCAATT+GGG - chr6_1:78662801-78662820 Msa0893810:intron 30.0%
! TTGATCAAGTGTGTTTTTCT+TGG + chr6_1:78662890-78662909 None:intergenic 30.0%
CTCAAGATGCAAAAAAATGA+AGG - chr6_1:78663003-78663022 Msa0893810:intron 30.0%
ATTACTTTGCATATGACGAT+TGG + chr6_1:78663317-78663336 None:intergenic 30.0%
AATCGTCATATGCAAAGTAA+TGG - chr6_1:78663316-78663335 Msa0893810:intron 30.0%
! AATTTAGGTTCTAATGGTGA+TGG - chr6_1:78663367-78663386 Msa0893810:intron 30.0%
!! TGATACGCTGTTTTACAATT+TGG + chr6_1:78663427-78663446 None:intergenic 30.0%
TCAACAAATGTACCTTGTAA+TGG + chr6_1:78663472-78663491 None:intergenic 30.0%
! CAAGGTACATTTGTTGAAAT+TGG - chr6_1:78663475-78663494 Msa0893810:intron 30.0%
GGTAGAGTGAGTAATAATAA+TGG - chr6_1:78663496-78663515 Msa0893810:intron 30.0%
AGAGTGAGTAATAATAATGG+TGG - chr6_1:78663499-78663518 Msa0893810:intron 30.0%
GAGAGTAATAGTATTAAGAG+TGG - chr6_1:78663571-78663590 Msa0893810:CDS 30.0%
! TAAATGGTAGTGCTAGTAAT+TGG - chr6_1:78663620-78663639 Msa0893810:CDS 30.0%
! ACTTTGAGAAATTACAATGG+CGG - chr6_1:78663664-78663683 Msa0893810:intron 30.0%
!! GATAAGTTTGTTATTGGACA+AGG - chr6_1:78663946-78663965 Msa0893810:intron 30.0%
!! CCAGTATTGATAACAGTAAA+TGG + chr6_1:78664005-78664024 None:intergenic 30.0%
CCATTTACTGTTATCAATAC+TGG - chr6_1:78664002-78664021 Msa0893810:intron 30.0%
TTTACTGTTATCAATACTGG+CGG - chr6_1:78664005-78664024 Msa0893810:intron 30.0%
! ATGGTTTATGTTTCTGTTGA+AGG - chr6_1:78664368-78664387 Msa0893810:intron 30.0%
AGTAAAAGAACTAACCCTTT+CGG + chr6_1:78664447-78664466 None:intergenic 30.0%
! TTTTCTTTATTCACGTTCCT+CGG - chr6_1:78664477-78664496 Msa0893810:intron 30.0%
!! AAATGGTGGATTTCAATACT+AGG - chr6_1:78664609-78664628 Msa0893810:intron 30.0%
! AAAGAGTAACGTTCTTTTGA+TGG - chr6_1:78664691-78664710 Msa0893810:intron 30.0%
! AAGAGTAACGTTCTTTTGAT+GGG - chr6_1:78664692-78664711 Msa0893810:intron 30.0%
!!! ACTTTTTTATGCTGAACACT+TGG + chr6_1:78664952-78664971 None:intergenic 30.0%
ATTGTGATCGCAATAAATAG+CGG - chr6_1:78665182-78665201 Msa0893810:intron 30.0%
AGTTGACAAGATTACTAAGA+AGG - chr6_1:78665566-78665585 Msa0893810:intron 30.0%
! TTGCTTCTTTATTCTAGTTG+TGG + chr6_1:78665899-78665918 None:intergenic 30.0%
! AAGAAGCAATTTGTTCACAT+AGG - chr6_1:78665910-78665929 Msa0893810:intron 30.0%
!! TTTGTTCACATAGGTTGATT+AGG - chr6_1:78665919-78665938 Msa0893810:intron 30.0%
TCTATTACATAATACGAGCA+AGG - chr6_1:78665968-78665987 Msa0893810:intron 30.0%
!!! ATCTGAATTTTGAGTTTCGA+AGG - chr6_1:78666096-78666115 Msa0893810:intron 30.0%
! TGTATGTTTGGTTTCACATT+TGG - chr6_1:78666136-78666155 Msa0893810:intron 30.0%
!! CAAATTTTTGAGAGTTCCAT+AGG - chr6_1:78666185-78666204 Msa0893810:intron 30.0%
CAAAATCAATAATGCACCTA+TGG + chr6_1:78666204-78666223 None:intergenic 30.0%
! TTTGGGGTTTGTTTAATTCA+AGG + chr6_1:78666308-78666327 None:intergenic 30.0%
ATTCGTAAATGCCATTCTTA+CGG - chr6_1:78666409-78666428 Msa0893810:intron 30.0%
TGTCTAGATAGTAAATGTTC+CGG - chr6_1:78666457-78666476 Msa0893810:CDS 30.0%
!! AACATTCAGGTATGTTGTTT+TGG - chr6_1:78666512-78666531 Msa0893810:intron 30.0%
TTGAAAAAACCATTTCAGAG+AGG - chr6_1:78666770-78666789 Msa0893810:intron 30.0%
!!! CAAGATTCTTCTATTGGTTT+TGG - chr6_1:78666917-78666936 Msa0893810:CDS 30.0%
AGCATCATCTTTACTTGAAT+CGG - chr6_1:78666991-78667010 Msa0893810:intron 30.0%
! CACAGTGTTTTATACTCATT+TGG + chr6_1:78667360-78667379 None:intergenic 30.0%
!! CTGTGTTAATAATTTTCAGG+TGG - chr6_1:78667375-78667394 Msa0893810:intron 30.0%
TCTGAACAATTAGTGTTCAT+AGG - chr6_1:78667554-78667573 Msa0893810:intron 30.0%
GATATTTAACAGAAAGCTAC+AGG - chr6_1:78667621-78667640 Msa0893810:intron 30.0%
! TTTAAGCGATTAGTTACGAA+CGG - chr6_1:78667705-78667724 Msa0893810:intron 30.0%
!! TCTCTAGAACTTTATCAATG+TGG - chr6_1:78667871-78667890 Msa0893810:intron 30.0%
! CAATGTGGAATTCTTGATTT+TGG - chr6_1:78667886-78667905 Msa0893810:intron 30.0%
ATACTTTAATCTTGCACTTC+AGG - chr6_1:78668113-78668132 Msa0893810:CDS 30.0%
TGATTCTTCATCAACAACTA+CGG + chr6_1:78668389-78668408 None:intergenic 30.0%
! AGAGGTACAATCTTTCATAA+AGG - chr6_1:78668498-78668517 Msa0893810:CDS 30.0%
TGTTCATCTGAATTCATGTT+GGG - chr6_1:78668897-78668916 Msa0893810:CDS 30.0%
! ATTTTCCCACTCAATAAAAG+TGG + chr6_1:78669018-78669037 None:intergenic 30.0%
TAGCTGCGTAAAGAAAATTA+TGG + chr6_1:78669053-78669072 None:intergenic 30.0%
TTGATCTAATTCAACGAGAT+GGG + chr6_1:78669113-78669132 None:intergenic 30.0%
ACTATAATGTTACATGCTCA+TGG + chr6_1:78669315-78669334 None:intergenic 30.0%
CAAGATTCCTCAAAAACAAA+TGG + chr6_1:78669534-78669553 None:intergenic 30.0%
AGACAAGTAGAAATGTGAAG+AGG + chr6_1:78662432-78662451 None:intergenic 35.0%
! TGATTTGTGAAATGGGTTTG+CGG + chr6_1:78662592-78662611 None:intergenic 35.0%
CTCCTTCTTCAATTCTCAAT+TGG - chr6_1:78662800-78662819 Msa0893810:intron 35.0%
ACCCAATTGAGAATTGAAGA+AGG + chr6_1:78662805-78662824 None:intergenic 35.0%
! GGCGAAAATTTAGGTTCTAA+TGG - chr6_1:78663361-78663380 Msa0893810:intron 35.0%
AGTATTAAGAGTGGTCATCA+TGG - chr6_1:78663580-78663599 Msa0893810:CDS 35.0%
AGTGAGGATTTAGGTCTAAA+TGG - chr6_1:78663604-78663623 Msa0893810:CDS 35.0%
ACCTGGGATTAATGTTGTAA+GGG - chr6_1:78663807-78663826 Msa0893810:CDS 35.0%
ATTAATGTTGTAAGGGCTAG+AGG - chr6_1:78663814-78663833 Msa0893810:CDS 35.0%
TTAATGTTGTAAGGGCTAGA+GGG - chr6_1:78663815-78663834 Msa0893810:CDS 35.0%
TAATGGTGAGAAGAATGCAT+GGG - chr6_1:78663867-78663886 Msa0893810:intron 35.0%
TTACAAATCTCCTTTGGTGA+AGG + chr6_1:78663919-78663938 None:intergenic 35.0%
TCACCAAAGGAGATTTGTAA+AGG - chr6_1:78663919-78663938 Msa0893810:intron 35.0%
AGACCTTTACAAATCTCCTT+TGG + chr6_1:78663925-78663944 None:intergenic 35.0%
!! GGTCTCGATAAGTTTGTTAT+TGG - chr6_1:78663940-78663959 Msa0893810:intron 35.0%
TATCAATACTGGCGGAAATA+CGG - chr6_1:78664013-78664032 Msa0893810:intron 35.0%
! GGAAAGGAATTGTGTTGTTA+AGG - chr6_1:78664220-78664239 Msa0893810:intron 35.0%
AATGTTATACCTGATCCTGT+TGG + chr6_1:78664719-78664738 None:intergenic 35.0%
TTAGCCGATACTGATATGAA+CGG + chr6_1:78664782-78664801 None:intergenic 35.0%
ATGAATACTTGCCTGTGTTA+AGG + chr6_1:78664898-78664917 None:intergenic 35.0%
!! AAATGTTCTGATTTTCAGGC+TGG - chr6_1:78665045-78665064 Msa0893810:CDS 35.0%
TTGTCAAATAGCAGCTATTG+CGG + chr6_1:78665248-78665267 None:intergenic 35.0%
TACTGTAGCATAGCGATATT+TGG + chr6_1:78665314-78665333 None:intergenic 35.0%
AATTAGCAACAACAGCAATC+TGG + chr6_1:78665767-78665786 None:intergenic 35.0%
! AGATTGCTGTTGTTGCTAAT+TGG - chr6_1:78665766-78665785 Msa0893810:intron 35.0%
TTTCGAAGGACAAACAAACA+CGG - chr6_1:78666110-78666129 Msa0893810:intron 35.0%
! ATGTTTGGTTTCACATTTGG+AGG - chr6_1:78666139-78666158 Msa0893810:intron 35.0%
ATAGTAAATGTTCCGGAGAA+AGG - chr6_1:78666464-78666483 Msa0893810:CDS 35.0%
TGAATCCTGATACATTTGTC+TGG - chr6_1:78666621-78666640 Msa0893810:intron 35.0%
CATTTCCAGACAAATGTATC+AGG + chr6_1:78666629-78666648 None:intergenic 35.0%
! AAAGGATTACCTCTCTGAAA+TGG + chr6_1:78666782-78666801 None:intergenic 35.0%
!! TTTTCAAGACCAAGGCATAA+AGG + chr6_1:78666800-78666819 None:intergenic 35.0%
TATTCTACCGCTTCTAATGT+TGG + chr6_1:78666957-78666976 None:intergenic 35.0%
!! TCTTGATTTTGGCGTTCTTA+AGG - chr6_1:78667897-78667916 Msa0893810:intron 35.0%
!! GAAAATATTGTTTGGCTTGC+AGG - chr6_1:78667976-78667995 Msa0893810:intron 35.0%
!! TGTTTACCAAGAGCATGTTT+TGG + chr6_1:78668013-78668032 None:intergenic 35.0%
TTTCTTCGCTATCATTCTCA+GGG + chr6_1:78668163-78668182 None:intergenic 35.0%
! AATGATAGCGAAGAAAGCAA+TGG - chr6_1:78668167-78668186 Msa0893810:CDS 35.0%
AAAGCAATGGCCAAAAATAC+TGG - chr6_1:78668180-78668199 Msa0893810:CDS 35.0%
AAAACTGTTTCCAATCTCTG+CGG - chr6_1:78668286-78668305 Msa0893810:CDS 35.0%
AATATCAAAACCGCAGAGAT+TGG + chr6_1:78668299-78668318 None:intergenic 35.0%
! GTTGTTGATGAAGAATCAGT+AGG - chr6_1:78668391-78668410 Msa0893810:CDS 35.0%
CTGAATCCTTTATCTTAGCT+AGG + chr6_1:78668480-78668499 None:intergenic 35.0%
AGCTAAGATAAAGGATTCAG+AGG - chr6_1:78668480-78668499 Msa0893810:CDS 35.0%
AGGGTTGACAGAATTGATTA+AGG - chr6_1:78668580-78668599 Msa0893810:CDS 35.0%
CAGAATTGATTAAGGATCCA+AGG - chr6_1:78668588-78668607 Msa0893810:CDS 35.0%
! GTGTTGCTACATGGATATAA+TGG + chr6_1:78668628-78668647 None:intergenic 35.0%
TGTAGCAACTGAGATTATCA+GGG + chr6_1:78668658-78668677 None:intergenic 35.0%
ATGTAGCAACTGAGATTATC+AGG + chr6_1:78668659-78668678 None:intergenic 35.0%
TGATAATCTCAGTTGCTACA+TGG - chr6_1:78668658-78668677 Msa0893810:CDS 35.0%
GTGTTCATCTGAATTCATGT+TGG - chr6_1:78668896-78668915 Msa0893810:CDS 35.0%
! CTGCGAATATGTGATTTTCA+GGG + chr6_1:78668938-78668957 None:intergenic 35.0%
TCAATAAAAGTGGTAGGTAG+GGG + chr6_1:78669008-78669027 None:intergenic 35.0%
CTCAATAAAAGTGGTAGGTA+GGG + chr6_1:78669009-78669028 None:intergenic 35.0%
ACTCAATAAAAGTGGTAGGT+AGG + chr6_1:78669010-78669029 None:intergenic 35.0%
!! TACCTACCACTTTTATTGAG+TGG - chr6_1:78669009-78669028 Msa0893810:exon 35.0%
!! ACCTACCACTTTTATTGAGT+GGG - chr6_1:78669010-78669029 Msa0893810:exon 35.0%
GTTGATCTAATTCAACGAGA+TGG + chr6_1:78669114-78669133 None:intergenic 35.0%
TGAATCAGAGTTACAGGATA+GGG - chr6_1:78669268-78669287 Msa0893810:five_prime_UTR 35.0%
TCAGTTCTTACTGAATAGGA+AGG - chr6_1:78669442-78669461 Msa0893810:five_prime_UTR 35.0%
TAGTGTAGCATTGCTAATTC+AGG - chr6_1:78669489-78669508 Msa0893810:five_prime_UTR 35.0%
AGTGTTTATCGGTGAAGAGA+TGG + chr6_1:78662466-78662485 None:intergenic 40.0%
CTTGAGATGAATCGAGACAT+GGG + chr6_1:78662989-78663008 None:intergenic 40.0%
TCTTGAGATGAATCGAGACA+TGG + chr6_1:78662990-78663009 None:intergenic 40.0%
AAGGAAATGACGTCATTTCG+CGG - chr6_1:78663022-78663041 Msa0893810:intron 40.0%
ACCTGAACCAAATTCGATGT+GGG + chr6_1:78663050-78663069 None:intergenic 40.0%
TACCTGAACCAAATTCGATG+TGG + chr6_1:78663051-78663070 None:intergenic 40.0%
CCGGTTTAATAAAGTGAACC+CGG + chr6_1:78663083-78663102 None:intergenic 40.0%
CCGGGTTCACTTTATTAAAC+CGG - chr6_1:78663080-78663099 Msa0893810:intron 40.0%
! AGTGCAAGAAAGGTACAAGT+GGG - chr6_1:78663192-78663211 Msa0893810:intron 40.0%
!! TTCATATCTTTGGAACACCG+TGG + chr6_1:78663283-78663302 None:intergenic 40.0%
CGTCATATGCAAAGTAATGG+TGG - chr6_1:78663319-78663338 Msa0893810:intron 40.0%
! CAAAGTAATGGTGGTGATTC+CGG - chr6_1:78663328-78663347 Msa0893810:intron 40.0%
!! TTAGGTTCTAATGGTGATGG+TGG - chr6_1:78663370-78663389 Msa0893810:intron 40.0%
CATCATGGAAGTGAGGATTT+AGG - chr6_1:78663595-78663614 Msa0893810:CDS 40.0%
!! ATTGGCTTGAAGTGTCAATG+TGG - chr6_1:78663638-78663657 Msa0893810:CDS 40.0%
! TTGGCTTGAAGTGTCAATGT+GGG - chr6_1:78663639-78663658 Msa0893810:CDS 40.0%
TTGAGAAATTACAATGGCGG+CGG - chr6_1:78663667-78663686 Msa0893810:intron 40.0%
!! AATGCTGGTGGTGGTAATAA+TGG - chr6_1:78663697-78663716 Msa0893810:intron 40.0%
!! ATGCTGGTGGTGGTAATAAT+GGG - chr6_1:78663698-78663717 Msa0893810:intron 40.0%
ACATTAATCCCAGGTGCAAA+AGG + chr6_1:78663802-78663821 None:intergenic 40.0%
CACCTGGGATTAATGTTGTA+AGG - chr6_1:78663806-78663825 Msa0893810:CDS 40.0%
GTAATGGTGAGAAGAATGCA+TGG - chr6_1:78663866-78663885 Msa0893810:intron 40.0%
AATGGTGAGAAGAATGCATG+GGG - chr6_1:78663868-78663887 Msa0893810:intron 40.0%
GGAAGAACAACATACCTTCT+TGG + chr6_1:78663977-78663996 None:intergenic 40.0%
ATCAATACTGGCGGAAATAC+GGG - chr6_1:78664014-78664033 Msa0893810:intron 40.0%
AACAGAAAACACAGACAGAC+GGG + chr6_1:78664058-78664077 None:intergenic 40.0%
CAACAGAAAACACAGACAGA+CGG + chr6_1:78664059-78664078 None:intergenic 40.0%
AACTAACCCTTTCGGTAAAG+TGG + chr6_1:78664439-78664458 None:intergenic 40.0%
CATCAGTTGAAAATCAACCG+AGG + chr6_1:78664497-78664516 None:intergenic 40.0%
! GGTGGATTTCAATACTAGGT+CGG - chr6_1:78664613-78664632 Msa0893810:intron 40.0%
GTGGATTTCAATACTAGGTC+GGG - chr6_1:78664614-78664633 Msa0893810:intron 40.0%
TGCACCGTTCATATCAGTAT+CGG - chr6_1:78664775-78664794 Msa0893810:intron 40.0%
CTGTGTTAAGGTTGTAGCAT+CGG + chr6_1:78664886-78664905 None:intergenic 40.0%
!! GATTTTCAGGCTGGTTATGT+TGG - chr6_1:78665054-78665073 Msa0893810:CDS 40.0%
TAATCGTTGTAGCAACGAGA+AGG + chr6_1:78665478-78665497 None:intergenic 40.0%
AATATCAGCCGAGATGTTTC+TGG - chr6_1:78665683-78665702 Msa0893810:intron 40.0%
!!! ACGAGCAAGGATGTTTTAGT+TGG - chr6_1:78665981-78666000 Msa0893810:intron 40.0%
CAAACACGGTAGTGTATGTT+TGG - chr6_1:78666124-78666143 Msa0893810:intron 40.0%
! TTTGGTTTCACATTTGGAGG+AGG - chr6_1:78666142-78666161 Msa0893810:intron 40.0%
!! GGAGGCAAATTTGTTTCTAG+AGG - chr6_1:78666160-78666179 Msa0893810:intron 40.0%
! CGTTTAGGATTCCGTAAGAA+TGG + chr6_1:78666423-78666442 None:intergenic 40.0%
AGAGGTAATCCTTTATGCCT+TGG - chr6_1:78666788-78666807 Msa0893810:intron 40.0%
!! TACACTCGTATTGGTTTCTG+CGG - chr6_1:78666852-78666871 Msa0893810:intron 40.0%
AATAGAAGAATCTTGCCGTC+TGG + chr6_1:78666912-78666931 None:intergenic 40.0%
AGACGGCAAGATTCTTCTAT+TGG - chr6_1:78666911-78666930 Msa0893810:CDS 40.0%
CTTCTAATGTTGGTACGAAC+TGG + chr6_1:78666947-78666966 None:intergenic 40.0%
GTTCGTACCAACATTAGAAG+CGG - chr6_1:78666947-78666966 Msa0893810:intron 40.0%
GGTCTCATACCAGAGTTTAT+TGG - chr6_1:78667421-78667440 Msa0893810:intron 40.0%
CTGACAAGCTAACTAAGATG+GGG + chr6_1:78667453-78667472 None:intergenic 40.0%
GCTGACAAGCTAACTAAGAT+GGG + chr6_1:78667454-78667473 None:intergenic 40.0%
CATAAGTTGCTCTTCGGTTA+AGG + chr6_1:78667476-78667495 None:intergenic 40.0%
TACCTGCATAAGTTGCTCTT+CGG + chr6_1:78667482-78667501 None:intergenic 40.0%
ACAGAACCAAAACATGCTCT+TGG - chr6_1:78668004-78668023 Msa0893810:intron 40.0%
CTTTCTTCGCTATCATTCTC+AGG + chr6_1:78668164-78668183 None:intergenic 40.0%
TATTAAGGCTCTTAAACCCC+TGG + chr6_1:78668208-78668227 None:intergenic 40.0%
TTTAACCGATGCCATGTATG+AGG - chr6_1:78668236-78668255 Msa0893810:CDS 40.0%
CAATACCTCATACATGGCAT+CGG + chr6_1:78668244-78668263 None:intergenic 40.0%
CCAGATCAATACCTCATACA+TGG + chr6_1:78668250-78668269 None:intergenic 40.0%
!! CCATGTATGAGGTATTGATC+TGG - chr6_1:78668247-78668266 Msa0893810:CDS 40.0%
CTGTCTTAATATCGGGAATC+TGG + chr6_1:78668348-78668367 None:intergenic 40.0%
CAGATTCCCGATATTAAGAC+AGG - chr6_1:78668346-78668365 Msa0893810:CDS 40.0%
TCGCTTCCTGTCTTAATATC+GGG + chr6_1:78668355-78668374 None:intergenic 40.0%
GTCGCTTCCTGTCTTAATAT+CGG + chr6_1:78668356-78668375 None:intergenic 40.0%
! AGAATTTTTCCTCCACATCC+TGG + chr6_1:78668430-78668449 None:intergenic 40.0%
TGTGGAGGAAAAATTCTTCG+CGG - chr6_1:78668433-78668452 Msa0893810:CDS 40.0%
GCAGTACCTAGCTAAGATAA+AGG - chr6_1:78668471-78668490 Msa0893810:CDS 40.0%
TAAAAGGCCTATCCTCAATG+AGG - chr6_1:78668560-78668579 Msa0893810:CDS 40.0%
AAAAGGCCTATCCTCAATGA+GGG - chr6_1:78668561-78668580 Msa0893810:CDS 40.0%
AATTCTGTCAACCCTCATTG+AGG + chr6_1:78668575-78668594 None:intergenic 40.0%
GTAGCAACTGAGATTATCAG+GGG + chr6_1:78668657-78668676 None:intergenic 40.0%
TACATGGATCCATGTAGCTA+AGG - chr6_1:78668695-78668714 Msa0893810:CDS 40.0%
CATCTGAATTCATGTTGGGA+TGG - chr6_1:78668901-78668920 Msa0893810:CDS 40.0%
!! CGAATATGTGATTTTCAGGG+AGG + chr6_1:78668935-78668954 None:intergenic 40.0%
! GCTGCGAATATGTGATTTTC+AGG + chr6_1:78668939-78668958 None:intergenic 40.0%
TCCCACTCAATAAAAGTGGT+AGG + chr6_1:78669014-78669033 None:intergenic 40.0%
TGTCAAGTGCATTACAATCG+AGG + chr6_1:78669148-78669167 None:intergenic 40.0%
AGTAGCTGAATCAGAGTTAC+AGG - chr6_1:78669262-78669281 Msa0893810:five_prime_UTR 40.0%
CTGAATCAGAGTTACAGGAT+AGG - chr6_1:78669267-78669286 Msa0893810:five_prime_UTR 40.0%
GGTCTCAGTTCTTACTGAAT+AGG - chr6_1:78669438-78669457 Msa0893810:five_prime_UTR 40.0%
AGGAAATGACGTCATTTCGC+GGG - chr6_1:78663023-78663042 Msa0893810:intron 45.0%
! ACCCACATCGAATTTGGTTC+AGG - chr6_1:78663046-78663065 Msa0893810:intron 45.0%
! ATAAAGTGAACCCGGTTCGA+CGG + chr6_1:78663075-78663094 None:intergenic 45.0%
CTGAATCACATCATAGTCGC+CGG - chr6_1:78663133-78663152 Msa0893810:intron 45.0%
! GAGTGCAAGAAAGGTACAAG+TGG - chr6_1:78663191-78663210 Msa0893810:intron 45.0%
! GTGCAAGAAAGGTACAAGTG+GGG - chr6_1:78663193-78663212 Msa0893810:intron 45.0%
!! TCTAATGGTGATGGTGGTGA+TGG - chr6_1:78663376-78663395 Msa0893810:intron 45.0%
!! TGCTGGTGGTGGTAATAATG+GGG - chr6_1:78663699-78663718 Msa0893810:intron 45.0%
TTAATCCCAGGTGCAAAAGG+AGG + chr6_1:78663799-78663818 None:intergenic 45.0%
GCCCTTACAACATTAATCCC+AGG + chr6_1:78663811-78663830 None:intergenic 45.0%
CATGGGGAGGGTCTAATTTA+GGG - chr6_1:78663884-78663903 Msa0893810:intron 45.0%
GAAGGATTTGCCTTCACCAA+AGG - chr6_1:78663906-78663925 Msa0893810:intron 45.0%
!! ACCATGCCACTTTACCGAAA+GGG - chr6_1:78664430-78664449 Msa0893810:intron 45.0%
GGTGCAGATTCAGGAATTTC+AGG - chr6_1:78664635-78664654 Msa0893810:intron 45.0%
!! GTTCTTTTGATGGGTCCAAC+AGG - chr6_1:78664701-78664720 Msa0893810:intron 45.0%
!! GTAGCATCGGCAATGACAAA+CGG + chr6_1:78664873-78664892 None:intergenic 45.0%
CGATGCTACAACCTTAACAC+AGG - chr6_1:78664884-78664903 Msa0893810:intron 45.0%
GGTACGTGTATTGTTCTGCA+GGG - chr6_1:78665113-78665132 Msa0893810:intron 45.0%
AATGTTGCAGCAGCTCAACA+AGG - chr6_1:78665525-78665544 Msa0893810:intron 45.0%
! TTTTTCCTGGCTCCTTTCTC+CGG + chr6_1:78666479-78666498 None:intergenic 45.0%
AAGGAGCCAGGAAAAATCCA+CGG - chr6_1:78666483-78666502 Msa0893810:intron 45.0%
!! AGCACTGACACTTCAGATTG+AGG - chr6_1:78667194-78667213 Msa0893810:intron 45.0%
GGGAATCGTCCAATAAACTC+TGG + chr6_1:78667433-78667452 None:intergenic 45.0%
GGCTGACAAGCTAACTAAGA+TGG + chr6_1:78667455-78667474 None:intergenic 45.0%
AACCGAAGAGCAACTTATGC+AGG - chr6_1:78667477-78667496 Msa0893810:intron 45.0%
!!! GAGCATGTTTTGGTTCTGTG+AGG + chr6_1:78668003-78668022 None:intergenic 45.0%
CGCGCAAAAACACACACAAA+CGG + chr6_1:78668074-78668093 None:intergenic 45.0%
GGAAAAATTCTTCGCGGAGA+TGG - chr6_1:78668439-78668458 Msa0893810:CDS 45.0%
TGTCAACCCTCATTGAGGAT+AGG + chr6_1:78668570-78668589 None:intergenic 45.0%
TGGATACACGTGTGAAACCT+TGG + chr6_1:78668608-78668627 None:intergenic 45.0%
TGCTACATGGATACACGAGT+TGG - chr6_1:78668671-78668690 Msa0893810:CDS 45.0%
! GGATACACGAGTTGGATACA+TGG - chr6_1:78668679-78668698 Msa0893810:CDS 45.0%
TAGTCCTCTCCTTAGCTACA+TGG + chr6_1:78668707-78668726 None:intergenic 45.0%
CAGATGAACACATCAGCGAA+AGG + chr6_1:78668887-78668906 None:intergenic 45.0%
AGACACCAAGTCATGCAACT+GGG + chr6_1:78668985-78669004 None:intergenic 45.0%
!! TATATATATATATATATATG+GGG - chr6_1:78667667-78667686 Msa0893810:intron 5.0%
AGAGAGAGAGAGAGAGAGAG+AGG + chr6_1:78662512-78662531 None:intergenic 50.0%
GTGTGAGGTAGAGAGAGAGA+GGG + chr6_1:78662549-78662568 None:intergenic 50.0%
TGTGTGAGGTAGAGAGAGAG+AGG + chr6_1:78662550-78662569 None:intergenic 50.0%
GAGTTGAAATCGCCTGAACG+CGG + chr6_1:78663111-78663130 None:intergenic 50.0%
AATCACATCATAGTCGCCGG+AGG - chr6_1:78663136-78663155 Msa0893810:intron 50.0%
GTGATATGCATAACCCGACC+CGG - chr6_1:78663233-78663252 Msa0893810:intron 50.0%
ATAACCCGACCCGGAAAATC+CGG - chr6_1:78663242-78663261 Msa0893810:intron 50.0%
! AGTAATGGTGGTGATTCCGG+CGG - chr6_1:78663331-78663350 Msa0893810:intron 50.0%
GGCGGAAACGGCGAAAATTT+AGG - chr6_1:78663352-78663371 Msa0893810:intron 50.0%
!! AATGGTGATGGTGGTGATGG+TGG - chr6_1:78663379-78663398 Msa0893810:intron 50.0%
GAGTGGTCATCATGGAAGTG+AGG - chr6_1:78663588-78663607 Msa0893810:CDS 50.0%
AGAAATTACAATGGCGGCGG+TGG - chr6_1:78663670-78663689 Msa0893810:intron 50.0%
TGGTGGCAATGGGAATGGTT+TGG - chr6_1:78663753-78663772 Msa0893810:CDS 50.0%
TTGGCTGTACATACTCCTCC+AGG - chr6_1:78663772-78663791 Msa0893810:CDS 50.0%
GTGAGAAGAATGCATGGGGA+GGG - chr6_1:78663872-78663891 Msa0893810:intron 50.0%
GCATGGGGAGGGTCTAATTT+AGG - chr6_1:78663883-78663902 Msa0893810:intron 50.0%
GGGAGGGTCTAATTTAGGGA+AGG - chr6_1:78663888-78663907 Msa0893810:intron 50.0%
TGGACAAGGTAGAGCCAAGA+AGG - chr6_1:78663960-78663979 Msa0893810:CDS 50.0%
!! CACCATGCCACTTTACCGAA+AGG - chr6_1:78664429-78664448 Msa0893810:intron 50.0%
ACCCTTTCGGTAAAGTGGCA+TGG + chr6_1:78664434-78664453 None:intergenic 50.0%
! TTGATGGGTCCAACAGGATC+AGG - chr6_1:78664707-78664726 Msa0893810:intron 50.0%
CGGTACGTGTATTGTTCTGC+AGG - chr6_1:78665112-78665131 Msa0893810:intron 50.0%
TAGCTAGCGCTAGAGAGTAG+CGG + chr6_1:78665220-78665239 None:intergenic 50.0%
ATGTCGAACAGCGACTGTAG+TGG + chr6_1:78665337-78665356 None:intergenic 50.0%
CGTTGTAGCAACGAGAAGGA+AGG + chr6_1:78665474-78665493 None:intergenic 50.0%
!! AGCCGAGATGTTTCTGGTGA+GGG - chr6_1:78665689-78665708 Msa0893810:intron 50.0%
CACCCTCACCAGAAACATCT+CGG + chr6_1:78665694-78665713 None:intergenic 50.0%
AGGAGCCAGGAAAAATCCAC+GGG - chr6_1:78666484-78666503 Msa0893810:intron 50.0%
! ATCACCCCGTGGATTTTTCC+TGG + chr6_1:78666492-78666511 None:intergenic 50.0%
TCCACGGGGTGATAACATTC+AGG - chr6_1:78666499-78666518 Msa0893810:intron 50.0%
ACCTGAATGTTATCACCCCG+TGG + chr6_1:78666503-78666522 None:intergenic 50.0%
GTGCTGCATCTTGGAGGATT+TGG + chr6_1:78667179-78667198 None:intergenic 50.0%
! GAAGTGTCAGTGCTGCATCT+TGG + chr6_1:78667188-78667207 None:intergenic 50.0%
TATATGTGTCAGTGCCGTGC+CGG + chr6_1:78667233-78667252 None:intergenic 50.0%
TGGCCAAAAATACTGGTGCC+AGG - chr6_1:78668187-78668206 Msa0893810:CDS 50.0%
! GGCCAAAAATACTGGTGCCA+GGG - chr6_1:78668188-78668207 Msa0893810:CDS 50.0%
! GCCAAAAATACTGGTGCCAG+GGG - chr6_1:78668189-78668208 Msa0893810:CDS 50.0%
! ACCCCTGGCACCAGTATTTT+TGG + chr6_1:78668193-78668212 None:intergenic 50.0%
CAACAACTACGGCGTCAATG+CGG + chr6_1:78668378-78668397 None:intergenic 50.0%
GTAGGATCACTAACAGCTCC+AGG - chr6_1:78668409-78668428 Msa0893810:CDS 50.0%
TCACTAACAGCTCCAGGATG+TGG - chr6_1:78668415-78668434 Msa0893810:CDS 50.0%
! GGGAGACATGTGTTGCTACA+TGG + chr6_1:78668637-78668656 None:intergenic 50.0%
GGATCCATGTAGCTAAGGAG+AGG - chr6_1:78668700-78668719 Msa0893810:CDS 50.0%
AGCGTGCCAATGGCATACTA+GGG + chr6_1:78668961-78668980 None:intergenic 50.0%
GAGACACCAAGTCATGCAAC+TGG + chr6_1:78668986-78669005 None:intergenic 50.0%
GGTTCAGGTAACCGTCGAAC+CGG - chr6_1:78663061-78663080 Msa0893810:intron 55.0%
GTTCAGGTAACCGTCGAACC+GGG - chr6_1:78663062-78663081 Msa0893810:intron 55.0%
! AAACCGGTTCAACCGCGTTC+AGG - chr6_1:78663096-78663115 Msa0893810:intron 55.0%
TATCACCATCCGACCCACCA+CGG + chr6_1:78663219-78663238 None:intergenic 55.0%
TAACCCGACCCGGAAAATCC+GGG - chr6_1:78663243-78663262 Msa0893810:intron 55.0%
! TAGCCTCAGCCCGGATTTTC+CGG + chr6_1:78663255-78663274 None:intergenic 55.0%
! GTGGACAATTAGCCTCAGCC+CGG + chr6_1:78663264-78663283 None:intergenic 55.0%
GGGCTGAGGCTAATTGTCCA+CGG - chr6_1:78663263-78663282 Msa0893810:intron 55.0%
AATTACAATGGCGGCGGTGG+TGG - chr6_1:78663673-78663692 Msa0893810:intron 55.0%
ATTACAATGGCGGCGGTGGT+GGG - chr6_1:78663674-78663693 Msa0893810:intron 55.0%
! TGGTAATAATGGGGAGCCGC+CGG - chr6_1:78663708-78663727 Msa0893810:intron 55.0%
TTCCCATTGCCACCACCTAC+CGG + chr6_1:78663748-78663767 None:intergenic 55.0%
! GTAGGTGGTGGCAATGGGAA+TGG - chr6_1:78663748-78663767 Msa0893810:intron 55.0%
! CAGGTCCTCCTTTTGCACCT+GGG - chr6_1:78663791-78663810 Msa0893810:CDS 55.0%
GGTGAGAAGAATGCATGGGG+AGG - chr6_1:78663871-78663890 Msa0893810:intron 55.0%
ACTAGGTCGGGTGCAGATTC+AGG - chr6_1:78664626-78664645 Msa0893810:intron 55.0%
!! CAGCCGAGATGTTTCTGGTG+AGG - chr6_1:78665688-78665707 Msa0893810:intron 55.0%
!! TTCTGGTGAGGGTGTTCAGC+AGG - chr6_1:78665700-78665719 Msa0893810:intron 55.0%
ATGTTCCGGAGAAAGGAGCC+AGG - chr6_1:78666471-78666490 Msa0893810:CDS 55.0%
GGAGCCAGGAAAAATCCACG+GGG - chr6_1:78666485-78666504 Msa0893810:intron 55.0%
GTGTCAGTGCTGCATCTTGG+AGG + chr6_1:78667185-78667204 None:intergenic 55.0%
CTAACAGCTCCAGGATGTGG+AGG - chr6_1:78668418-78668437 Msa0893810:CDS 55.0%
TCTTCGCGGAGATGGTGCTT+TGG - chr6_1:78668447-78668466 Msa0893810:CDS 55.0%
TCGCAGCCCTAGTATGCCAT+TGG - chr6_1:78668952-78668971 Msa0893810:CDS 55.0%
CAGCGTGCCAATGGCATACT+AGG + chr6_1:78668962-78668981 None:intergenic 55.0%
CGCGGGACCCACATCGAATT+TGG - chr6_1:78663040-78663059 Msa0893810:intron 60.0%
TCGCCTGAACGCGGTTGAAC+CGG + chr6_1:78663102-78663121 None:intergenic 60.0%
CACATCATAGTCGCCGGAGG+TGG - chr6_1:78663139-78663158 Msa0893810:intron 60.0%
CCGGCATTGTTTGCCACCTC+CGG + chr6_1:78663155-78663174 None:intergenic 60.0%
CCGGAGGTGGCAAACAATGC+CGG - chr6_1:78663152-78663171 Msa0893810:intron 60.0%
GAGGTGGCAAACAATGCCGG+CGG - chr6_1:78663155-78663174 Msa0893810:intron 60.0%
AGGTGGCAAACAATGCCGGC+GGG - chr6_1:78663156-78663175 Msa0893810:intron 60.0%
CGGTGGTCGGAGTGCAAGAA+AGG - chr6_1:78663182-78663201 Msa0893810:intron 60.0%
! GAAAGGTACAAGTGGGGCCG+TGG - chr6_1:78663199-78663218 Msa0893810:intron 60.0%
! TCAGCCCGGATTTTCCGGGT+CGG + chr6_1:78663250-78663269 None:intergenic 60.0%
! AGCCTCAGCCCGGATTTTCC+GGG + chr6_1:78663254-78663273 None:intergenic 60.0%
! AATGGTGGTGATTCCGGCGG+CGG - chr6_1:78663334-78663353 Msa0893810:intron 60.0%
! ATTTTCGCCGTTTCCGCCGC+CGG + chr6_1:78663350-78663369 None:intergenic 60.0%
! CACCGGTAGGTGGTGGCAAT+GGG - chr6_1:78663743-78663762 Msa0893810:intron 60.0%
GGTGCAAAAGGAGGACCTGG+AGG + chr6_1:78663790-78663809 None:intergenic 60.0%
CCAGGTGCAAAAGGAGGACC+TGG + chr6_1:78663793-78663812 None:intergenic 60.0%
! CCAGGTCCTCCTTTTGCACC+TGG - chr6_1:78663790-78663809 Msa0893810:CDS 60.0%
TCACCATTACCACCACCGCC+CGG + chr6_1:78663856-78663875 None:intergenic 60.0%
TTGAGGCCATGCCCAGACAC+CGG - chr6_1:78667211-78667230 Msa0893810:intron 60.0%
CGCTGCCCAGTTGCATGACT+TGG - chr6_1:78668977-78668996 Msa0893810:CDS 60.0%
TGGCAAACAATGCCGGCGGG+TGG - chr6_1:78663159-78663178 Msa0893810:intron 65.0%
CAAACAATGCCGGCGGGTGG+CGG - chr6_1:78663162-78663181 Msa0893810:intron 65.0%
AGGTACAAGTGGGGCCGTGG+TGG - chr6_1:78663202-78663221 Msa0893810:intron 65.0%
GGTACAAGTGGGGCCGTGGT+GGG - chr6_1:78663203-78663222 Msa0893810:intron 65.0%
! CAGCCCGGATTTTCCGGGTC+GGG + chr6_1:78663249-78663268 None:intergenic 65.0%
GACCCGGAAAATCCGGGCTG+AGG - chr6_1:78663249-78663268 Msa0893810:intron 65.0%
GGTGATTCCGGCGGCGGAAA+CGG - chr6_1:78663340-78663359 Msa0893810:intron 65.0%
!! GGTGGTGGGAATGCTGGTGG+TGG - chr6_1:78663688-78663707 Msa0893810:intron 65.0%
! ACCGGTGGTGGCCATGTCTC+CGG + chr6_1:78663730-78663749 None:intergenic 65.0%
GAGACATGGCCACCACCGGT+AGG - chr6_1:78663730-78663749 Msa0893810:intron 65.0%
ACATGGCCACCACCGGTAGG+TGG - chr6_1:78663733-78663752 Msa0893810:intron 65.0%
TTGCCACCACCTACCGGTGG+TGG + chr6_1:78663742-78663761 None:intergenic 65.0%
CCATTGCCACCACCTACCGG+TGG + chr6_1:78663745-78663764 None:intergenic 65.0%
! CCACCGGTAGGTGGTGGCAA+TGG - chr6_1:78663742-78663761 Msa0893810:intron 65.0%
TGTAAGGGCTAGAGGGCCGC+AGG - chr6_1:78663822-78663841 Msa0893810:CDS 65.0%
! TCAGTGCCGTGCCGGTGTCT+GGG + chr6_1:78667225-78667244 None:intergenic 65.0%
GCAACTGGGCAGCGTGCCAA+TGG + chr6_1:78668971-78668990 None:intergenic 65.0%
!! CAAGTGGGGCCGTGGTGGGT+CGG - chr6_1:78663207-78663226 Msa0893810:intron 70.0%
!! GGCGGTGGTGGGAATGCTGG+TGG - chr6_1:78663685-78663704 Msa0893810:intron 70.0%
ATGGGGAGCCGCCGGAGACA+TGG - chr6_1:78663716-78663735 Msa0893810:intron 70.0%
! GGTGGTGGCCATGTCTCCGG+CGG + chr6_1:78663727-78663746 None:intergenic 70.0%
GCCGGAGACATGGCCACCAC+CGG - chr6_1:78663726-78663745 Msa0893810:intron 70.0%
TGGCCACCACCGGTAGGTGG+TGG - chr6_1:78663736-78663755 Msa0893810:intron 70.0%
AAGGGCTAGAGGGCCGCAGG+AGG - chr6_1:78663825-78663844 Msa0893810:CDS 70.0%
AGGGCTAGAGGGCCGCAGGA+GGG - chr6_1:78663826-78663845 Msa0893810:CDS 70.0%
! GGTCCGGGCGGTGGTGGTAA+TGG - chr6_1:78663850-78663869 Msa0893810:CDS 70.0%
GCCATGCCCAGACACCGGCA+CGG - chr6_1:78667216-78667235 Msa0893810:intron 70.0%
! GTCAGTGCCGTGCCGGTGTC+TGG + chr6_1:78667226-78667245 None:intergenic 70.0%
! ACAATGCCGGCGGGTGGCGG+TGG - chr6_1:78663165-78663184 Msa0893810:intron 75.0%
!! TGGGGCCGTGGTGGGTCGGA+TGG - chr6_1:78663211-78663230 Msa0893810:intron 75.0%
!! GGCGGCGGTGGTGGGAATGC+TGG - chr6_1:78663682-78663701 Msa0893810:intron 75.0%
GCTAGAGGGCCGCAGGAGGG+TGG - chr6_1:78663829-78663848 Msa0893810:CDS 75.0%
AGGGCCGCAGGAGGGTGGTC+CGG - chr6_1:78663834-78663853 Msa0893810:CDS 75.0%
! GCCGTGCCGGTGTCTGGGCA+TGG + chr6_1:78667220-78667239 None:intergenic 75.0%
!! TGCCGGCGGGTGGCGGTGGT+CGG - chr6_1:78663169-78663188 Msa0893810:intron 80.0%
! CTCCGACCACCGCCACCCGC+CGG + chr6_1:78663174-78663193 None:intergenic 80.0%
! GGGCCGCAGGAGGGTGGTCC+GGG - chr6_1:78663835-78663854 Msa0893810:CDS 80.0%
! CCGCCCGGACCACCCTCCTG+CGG + chr6_1:78663841-78663860 None:intergenic 80.0%
! CCGCAGGAGGGTGGTCCGGG+CGG - chr6_1:78663838-78663857 Msa0893810:CDS 80.0%
! CAGGAGGGTGGTCCGGGCGG+TGG - chr6_1:78663841-78663860 Msa0893810:CDS 80.0%
! GAGGGTGGTCCGGGCGGTGG+TGG - chr6_1:78663844-78663863 Msa0893810:CDS 80.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 78662412 78669595 78662412 ID=Msa0893810;Name=Msa0893810
chr6_1 mRNA 78662412 78669595 78662412 ID=Msa0893810-mRNA-1;Parent=Msa0893810;Name=Msa0893810-mRNA-1;_AED=0.07;_eAED=0.07;_QI=577|1|1|1|1|1|15|270|725
chr6_1 exon 78662412 78662750 78662412 ID=Msa0893810-mRNA-1:exon:13137;Parent=Msa0893810-mRNA-1
chr6_1 exon 78663506 78663658 78663506 ID=Msa0893810-mRNA-1:exon:13136;Parent=Msa0893810-mRNA-1
chr6_1 exon 78663750 78663872 78663750 ID=Msa0893810-mRNA-1:exon:13135;Parent=Msa0893810-mRNA-1
chr6_1 exon 78663947 78664009 78663947 ID=Msa0893810-mRNA-1:exon:13134;Parent=Msa0893810-mRNA-1
chr6_1 exon 78664509 78664613 78664509 ID=Msa0893810-mRNA-1:exon:13133;Parent=Msa0893810-mRNA-1
chr6_1 exon 78664995 78665094 78664995 ID=Msa0893810-mRNA-1:exon:13132;Parent=Msa0893810-mRNA-1
chr6_1 exon 78665216 78665286 78665216 ID=Msa0893810-mRNA-1:exon:13131;Parent=Msa0893810-mRNA-1
chr6_1 exon 78665487 78665543 78665487 ID=Msa0893810-mRNA-1:exon:13130;Parent=Msa0893810-mRNA-1
chr6_1 exon 78666259 78666336 78666259 ID=Msa0893810-mRNA-1:exon:13129;Parent=Msa0893810-mRNA-1
chr6_1 exon 78666420 78666494 78666420 ID=Msa0893810-mRNA-1:exon:13128;Parent=Msa0893810-mRNA-1
chr6_1 exon 78666894 78666944 78666894 ID=Msa0893810-mRNA-1:exon:13127;Parent=Msa0893810-mRNA-1
chr6_1 exon 78667102 78667181 78667102 ID=Msa0893810-mRNA-1:exon:13126;Parent=Msa0893810-mRNA-1
chr6_1 exon 78667279 78667376 78667279 ID=Msa0893810-mRNA-1:exon:13125;Parent=Msa0893810-mRNA-1
chr6_1 exon 78667556 78667617 78667556 ID=Msa0893810-mRNA-1:exon:13124;Parent=Msa0893810-mRNA-1
chr6_1 exon 78668026 78669595 78668026 ID=Msa0893810-mRNA-1:exon:13123;Parent=Msa0893810-mRNA-1
chr6_1 five_prime_UTR 78669019 78669595 78669019 ID=Msa0893810-mRNA-1:five_prime_utr;Parent=Msa0893810-mRNA-1
chr6_1 CDS 78668026 78669018 78668026 ID=Msa0893810-mRNA-1:cds;Parent=Msa0893810-mRNA-1
chr6_1 CDS 78667556 78667617 78667556 ID=Msa0893810-mRNA-1:cds;Parent=Msa0893810-mRNA-1
chr6_1 CDS 78667279 78667376 78667279 ID=Msa0893810-mRNA-1:cds;Parent=Msa0893810-mRNA-1
chr6_1 CDS 78667102 78667181 78667102 ID=Msa0893810-mRNA-1:cds;Parent=Msa0893810-mRNA-1
chr6_1 CDS 78666894 78666944 78666894 ID=Msa0893810-mRNA-1:cds;Parent=Msa0893810-mRNA-1
chr6_1 CDS 78666420 78666494 78666420 ID=Msa0893810-mRNA-1:cds;Parent=Msa0893810-mRNA-1
chr6_1 CDS 78666259 78666336 78666259 ID=Msa0893810-mRNA-1:cds;Parent=Msa0893810-mRNA-1
chr6_1 CDS 78665487 78665543 78665487 ID=Msa0893810-mRNA-1:cds;Parent=Msa0893810-mRNA-1
chr6_1 CDS 78665216 78665286 78665216 ID=Msa0893810-mRNA-1:cds;Parent=Msa0893810-mRNA-1
chr6_1 CDS 78664995 78665094 78664995 ID=Msa0893810-mRNA-1:cds;Parent=Msa0893810-mRNA-1
chr6_1 CDS 78664509 78664613 78664509 ID=Msa0893810-mRNA-1:cds;Parent=Msa0893810-mRNA-1
chr6_1 CDS 78663947 78664009 78663947 ID=Msa0893810-mRNA-1:cds;Parent=Msa0893810-mRNA-1
chr6_1 CDS 78663750 78663872 78663750 ID=Msa0893810-mRNA-1:cds;Parent=Msa0893810-mRNA-1
chr6_1 CDS 78663506 78663658 78663506 ID=Msa0893810-mRNA-1:cds;Parent=Msa0893810-mRNA-1
chr6_1 CDS 78662682 78662750 78662682 ID=Msa0893810-mRNA-1:cds;Parent=Msa0893810-mRNA-1
chr6_1 three_prime_UTR 78662412 78662681 78662412 ID=Msa0893810-mRNA-1:three_prime_utr;Parent=Msa0893810-mRNA-1
Gene Sequence

>Msa0893810

ATGTCTCGATTCATCTCAAGATGCAAAAAAATGAAGGAAATGACGTCATTTCGCGGGACCCACATCGAATTTGGTTCAGGTAACCGTCGAACCGGGTTCACTTTATTAAACCGGTTCAACCGCGTTCAGGCGATTTCAACTCATCTGAATCACATCATAGTCGCCGGAGGTGGCAAACAATGCCGGCGGGTGGCGGTGGTCGGAGTGCAAGAAAGGTACAAGTGGGGCCGTGGTGGGTCGGATGGTGATATGCATAACCCGACCCGGAAAATCCGGGCTGAGGCTAATTGTCCACGGTGTTCCAAAGATATGAATTTGTTTTTCTCCAATCGTCATATGCAAAGTAATGGTGGTGATTCCGGCGGCGGAAACGGCGAAAATTTAGGTTCTAATGGTGATGGTGGTGATGGTGGTTATCAAGCAGTGAATTTATGTCCAAATTGTAAAACAGCGTATCATTTTCGACCGTATAATACATCACCATTACAAGGTACATTTGTTGAAATTGGTAGAGTGAGTAATAATAATGGTGGTAATAGTAAAACTCAATTAACTAGAAGGTTTAAATATGGTATTGGAAAAGAGAGTAATAGTATTAAGAGTGGTCATCATGGAAGTGAGGATTTAGGTCTAAATGGTAGTGCTAGTAATTGGCTTGAAGTGTCAATGTGGGAAACTTTGAGAAATTACAATGGCGGCGGTGGTGGGAATGCTGGTGGTGGTAATAATGGGGAGCCGCCGGAGACATGGCCACCACCGGTAGGTGGTGGCAATGGGAATGGTTTGGCTGTACATACTCCTCCAGGTCCTCCTTTTGCACCTGGGATTAATGTTGTAAGGGCTAGAGGGCCGCAGGAGGGTGGTCCGGGCGGTGGTGGTAATGGTGAGAAGAATGCATGGGGAGGGTCTAATTTAGGGAAGGATTTGCCTTCACCAAAGGAGATTTGTAAAGGTCTCGATAAGTTTGTTATTGGACAAGGTAGAGCCAAGAAGGTGCTTTCTGTAGCTGTTTATAATCACTATAAAAGAATACACCATGCCACTTTACCGAAAGGGTCGGGTGCAGATTCAGGAATTTCAGGCATATTAGATGATGACGAAAATGTTGAGCTAGAAAAGAGTAACGTTCTTTTGATGGGTCCAACAGGATCAGGGAAGACATTACTTGCAAAAACATTAGCTCGATTTGTGAATGTTCCGTTTGTCATTGCCGATGCTACAACCTTAACACAGGCTGGTTATGTTGGAGAAGATGTCGAATCAATACTATATAAGCTACTTGCGGCAGCAGATTATAATGTTGCAGCAGCTCAACAAGGAATAATTTACATTGACGAAGTTGACAAGATTACTAAGAAGGCTGAGAGCTTAAATATCAGCCGAGATGTTTCTGGTGAGGGTGTTCAGCAGGCATTATTAAAAATGCTTGAAGGAACTATAGTAAATGTTCCGGAGAAAGGAGCCAGGAAAAATCCACGGGGTGATAACATTCAGATAGACACAAAGAACATTCTTTTTATATGTGGTGGAGCATTTATTGATCTTGAAAAAACCATTTCAGAGAGACGGCAAGATTCTTCTATTGGTTTTGGAGCACCAGTTCGTACCAACATTAGAAGCGGTAGAATAATCGATTCTGCTGTAGCATCATCTTTACTTGAATCGGTGGAAAGTTCTGATCTTATTGCATATGGTCTCATACCAGAGTTTATTGGACGATTCCCCATCTTAGTTAGCTTGTCAGCCTTAACCGAAGAGCAACTTATGCAGGTCCTCACAGAACCAAAACATGCTCTTGGTAAACAGTACAAGAAATTAGTCGGCATGAATGAAGTAAAGCTACACTTCACAGAGAAAGCCCTGAGAATGATAGCGAAGAAAGCAATGGCCAAAAATACTGGTGCCAGGGGTTTAAGAGCCTTAATAGAAAACATTTTAACCGATGCCATGTATGAGATTCCCGATATTAAGACAGGAAGCGACCGCATTGACGCCGTAGTTGTTGATGAAGAATCAGTAGGATCACTAACAGCTCCAGGATGTGGAGGAAAAATTCTTCGCGGAGATGGTGCTTTGGAGCAGTACCTAGCTAAGATAAAGGATTCAGAGGATGTAGTAGCTGAATCAGAGTTACAGGATAGGGATTCAGATACTTCATCAAGAGCCATGAGCATGTAA
Protein sequence

>Msa0893810

MSRFISRCKKMKEMTSFRGTHIEFGSGNRRTGFTLLNRFNRVQAISTHLNHIIVAGGGKQCRRVAVVGVQERYKWGRGGSDGDMHNPTRKIRAEANCPRCSKDMNLFFSNRHMQSNGGDSGGGNGENLGSNGDGGDGGYQAVNLCPNCKTAYHFRPYNTSPLQGTFVEIGRVSNNNGGNSKTQLTRRFKYGIGKESNSIKSGHHGSEDLGLNGSASNWLEVSMWETLRNYNGGGGGNAGGGNNGEPPETWPPPVGGGNGNGLAVHTPPGPPFAPGINVVRARGPQEGGPGGGGNGEKNAWGGSNLGKDLPSPKEICKGLDKFVIGQGRAKKVLSVAVYNHYKRIHHATLPKGSGADSGISGILDDDENVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLAAADYNVAAAQQGIIYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKNPRGDNIQIDTKNILFICGGAFIDLEKTISERRQDSSIGFGAPVRTNIRSGRIIDSAVASSLLESVESSDLIAYGLIPEFIGRFPILVSLSALTEEQLMQVLTEPKHALGKQYKKLVGMNEVKLHFTEKALRMIAKKAMAKNTGARGLRALIENILTDAMYEIPDIKTGSDRIDAVVVDEESVGSLTAPGCGGKILRGDGALEQYLAKIKDSEDVVAESELQDRDSDTSSRAMSM*