Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0667650 | XP_003604650.1 | 96.748 | 123 | 4 | 0 | 1 | 123 | 1 | 123 | 1.01e-78 | 238 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0667650 | sp|O80439|RR31_ARATH | 70.588 | 68 | 20 | 0 | 56 | 123 | 51 | 118 | 1.88e-24 | 93.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0667650 | G7JN21 | 96.748 | 123 | 4 | 0 | 1 | 123 | 1 | 123 | 4.81e-79 | 238 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0667650 | Msa1030420 | 0.847218 | 1.329102e-59 | -8.615850e-47 |
| Msa0667650 | Msa1215480 | -0.802188 | 6.314763e-49 | -8.615850e-47 |
| Msa0532630 | Msa0667650 | 0.859477 | 4.024998e-63 | -8.615850e-47 |
| Msa0597510 | Msa0667650 | 0.830281 | 3.208345e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0667650 | MtrunA17_Chr4g0006161 | 96.748 | 123 | 4 | 0 | 1 | 123 | 1 | 123 | 9.27e-83 | 238 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0667650 | AT2G38140.1 | 70.588 | 68 | 20 | 0 | 56 | 123 | 51 | 118 | 1.91e-25 | 93.2 |
Find 41 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTCAAGCTTCTCTTTCT+TGG | 0.182199 | 4_4:-8233263 | None:intergenic |
| TCGCTTTCACCAACCCCTTC+TGG | 0.306084 | 4_4:+8232355 | Msa0667650:CDS |
| GTTCCCTTGTTCTTGTTCCT+TGG | 0.334623 | 4_4:-8233205 | None:intergenic |
| TTCTCTTTCTTGGTAGCATC+TGG | 0.349140 | 4_4:-8233253 | None:intergenic |
| GCGTGGAGTTGAAGAGATAG+TGG | 0.362460 | 4_4:-8232244 | None:intergenic |
| GAAAGAGAAGCTTGAAGATA+AGG | 0.394365 | 4_4:+8233267 | Msa0667650:CDS |
| AAACGGTTCAGCCATTCGTT+TGG | 0.400874 | 4_4:+8232525 | Msa0667650:CDS |
| TGTATTGTGGCAGAGGTGAT+AGG | 0.423136 | 4_4:+8232487 | Msa0667650:CDS |
| AGGAACAAGAACAAGGGAAC+AGG | 0.442127 | 4_4:+8233208 | Msa0667650:CDS |
| CTTGTAGTGTATTGTGGCAG+AGG | 0.475393 | 4_4:+8232480 | Msa0667650:intron |
| CGTGGAGTTGAAGAGATAGT+GGG | 0.481830 | 4_4:-8232243 | None:intergenic |
| GATTGGTGAGTGAAGAGATT+GGG | 0.488179 | 4_4:-8232296 | None:intergenic |
| TCTTTCTTGGTAGCATCTGG+TGG | 0.499433 | 4_4:-8233250 | None:intergenic |
| ATTGGGATTGAGAGAAGGAA+AGG | 0.519722 | 4_4:-8232279 | None:intergenic |
| GGAAAACTGCTAAGGGGAAA+CGG | 0.521583 | 4_4:+8232508 | Msa0667650:CDS |
| AAGAGATTGGGATTGAGAGA+AGG | 0.529493 | 4_4:-8232284 | None:intergenic |
| AAATCAACTAACTAGAAAAG+AGG | 0.532100 | 4_4:-8233318 | None:intergenic |
| TGATTGGTGAGTGAAGAGAT+TGG | 0.539355 | 4_4:-8232297 | None:intergenic |
| AAAGGTGAGAAGAAGAAGCG+TGG | 0.545327 | 4_4:-8232261 | None:intergenic |
| AGTTGAAGAGATAGTGGGGA+AGG | 0.548757 | 4_4:-8232238 | None:intergenic |
| AGGTGATAGGAAAACTGCTA+AGG | 0.552164 | 4_4:+8232500 | Msa0667650:CDS |
| TCTGGTGGAGCATAAATCCT+TGG | 0.553001 | 4_4:-8233235 | None:intergenic |
| GGGACTGATGAAGTGATGAT+TGG | 0.557778 | 4_4:-8232313 | None:intergenic |
| ACAAGGTTGAAGAGAGGGTG+GGG | 0.560540 | 4_4:-8232333 | None:intergenic |
| AATCAACTAACTAGAAAAGA+GGG | 0.565948 | 4_4:-8233317 | None:intergenic |
| GGTGATAGGAAAACTGCTAA+GGG | 0.567207 | 4_4:+8232501 | Msa0667650:CDS |
| ACATTACATTTCCAAACGAA+TGG | 0.569487 | 4_4:-8232536 | None:intergenic |
| AAGGCCAAGGAACAAGAACA+AGG | 0.570532 | 4_4:+8233201 | Msa0667650:CDS |
| GTGGAGTTGAAGAGATAGTG+GGG | 0.572105 | 4_4:-8232242 | None:intergenic |
| CGACAAGGTTGAAGAGAGGG+TGG | 0.579098 | 4_4:-8232335 | None:intergenic |
| GGTGGAGCATAAATCCTTGG+TGG | 0.582114 | 4_4:-8233232 | None:intergenic |
| TATCCTCTCAGTTATGGCCA+TGG | 0.592654 | 4_4:+8232192 | None:intergenic |
| TAGAAGCAGCGATGATGCCA+TGG | 0.599730 | 4_4:-8232209 | None:intergenic |
| GACAAGGTTGAAGAGAGGGT+GGG | 0.607447 | 4_4:-8232334 | None:intergenic |
| GATGTTATCAGGCAAGGCCA+AGG | 0.622878 | 4_4:+8233188 | Msa0667650:intron |
| AAGCGACAAGGTTGAAGAGA+GGG | 0.625118 | 4_4:-8232338 | None:intergenic |
| AGGCCAAGGAACAAGAACAA+GGG | 0.651122 | 4_4:+8233202 | Msa0667650:CDS |
| AAAGCGACAAGGTTGAAGAG+AGG | 0.661146 | 4_4:-8232339 | None:intergenic |
| AGGGGTTGGTGAAAGCGACA+AGG | 0.666764 | 4_4:-8232350 | None:intergenic |
| ACAAGGGAACAGGACCACCA+AGG | 0.709490 | 4_4:+8233218 | Msa0667650:CDS |
| GTGATAGGAAAACTGCTAAG+GGG | 0.715035 | 4_4:+8232502 | Msa0667650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTCTCCAAAAAAAA+TGG | + | chr4_4:8232380-8232399 | Msa0667650:intron | 15.0% |
| !!! | AACAAAAATTCCATTTTTTT+TGG | - | chr4_4:8232393-8232412 | None:intergenic | 15.0% |
| !!! | ATTTTTTTCTCCAAAAAAAA+TGG | + | chr4_4:8232380-8232399 | Msa0667650:intron | 15.0% |
| !!! | AACAAAAATTCCATTTTTTT+TGG | - | chr4_4:8232393-8232412 | None:intergenic | 15.0% |
| !!! | TGGAATTTTTGTTATGTATT+TGG | + | chr4_4:8232400-8232419 | Msa0667650:intron | 20.0% |
| !!! | GATAACCCATTTTTTTATTT+TGG | + | chr4_4:8232442-8232461 | Msa0667650:intron | 20.0% |
| !! | ACGAACCAAAATAAAAAAAT+GGG | - | chr4_4:8232450-8232469 | None:intergenic | 20.0% |
| !! | AACGAACCAAAATAAAAAAA+TGG | - | chr4_4:8232451-8232470 | None:intergenic | 20.0% |
| !! | AATGTACATTAATTCATGTT+TGG | + | chr4_4:8232694-8232713 | Msa0667650:intron | 20.0% |
| !!! | ATGATGTATCCTTTTATAAA+AGG | + | chr4_4:8232767-8232786 | Msa0667650:intron | 20.0% |
| !! | TTCAAAAGTGGTTATAAAAT+AGG | + | chr4_4:8232848-8232867 | Msa0667650:intron | 20.0% |
| !!! | CAAAATTTGAGATTATTTCA+TGG | + | chr4_4:8233055-8233074 | Msa0667650:intron | 20.0% |
| !!! | ATCATTATTATTGTTTGTTG+AGG | + | chr4_4:8233094-8233113 | Msa0667650:intron | 20.0% |
| !!! | GATTTTTGTTGAAATTTTTG+TGG | + | chr4_4:8233116-8233135 | Msa0667650:intron | 20.0% |
| !! | TACAAAATAACATTAGAACT+AGG | - | chr4_4:8233155-8233174 | None:intergenic | 20.0% |
| !!! | ATATGTTATTTGATGTTATC+AGG | + | chr4_4:8233177-8233196 | Msa0667650:intron | 20.0% |
| !!! | TGGAATTTTTGTTATGTATT+TGG | + | chr4_4:8232400-8232419 | Msa0667650:intron | 20.0% |
| !!! | GATAACCCATTTTTTTATTT+TGG | + | chr4_4:8232442-8232461 | Msa0667650:intron | 20.0% |
| !! | ACGAACCAAAATAAAAAAAT+GGG | - | chr4_4:8232450-8232469 | None:intergenic | 20.0% |
| !! | AACGAACCAAAATAAAAAAA+TGG | - | chr4_4:8232451-8232470 | None:intergenic | 20.0% |
| !! | AATGTACATTAATTCATGTT+TGG | + | chr4_4:8232694-8232713 | Msa0667650:intron | 20.0% |
| !!! | ATGATGTATCCTTTTATAAA+AGG | + | chr4_4:8232767-8232786 | Msa0667650:intron | 20.0% |
| !! | TTCAAAAGTGGTTATAAAAT+AGG | + | chr4_4:8232848-8232867 | Msa0667650:intron | 20.0% |
| !!! | CAAAATTTGAGATTATTTCA+TGG | + | chr4_4:8233055-8233074 | Msa0667650:intron | 20.0% |
| !!! | ATCATTATTATTGTTTGTTG+AGG | + | chr4_4:8233094-8233113 | Msa0667650:intron | 20.0% |
| !!! | GATTTTTGTTGAAATTTTTG+TGG | + | chr4_4:8233116-8233135 | Msa0667650:intron | 20.0% |
| !! | TACAAAATAACATTAGAACT+AGG | - | chr4_4:8233155-8233174 | None:intergenic | 20.0% |
| !!! | ATATGTTATTTGATGTTATC+AGG | + | chr4_4:8233177-8233196 | Msa0667650:intron | 20.0% |
| ! | GAATTTATTGAGTGTATGTT+CGG | + | chr4_4:8232600-8232619 | Msa0667650:intron | 25.0% |
| !!! | TGGTAGTTATTTTTCAAAAG+TGG | + | chr4_4:8232836-8232855 | Msa0667650:intron | 25.0% |
| !!! | CATGTAGTTTTCTAATTTGT+AGG | + | chr4_4:8233003-8233022 | Msa0667650:intron | 25.0% |
| ! | GAATTTATTGAGTGTATGTT+CGG | + | chr4_4:8232600-8232619 | Msa0667650:intron | 25.0% |
| !!! | TGGTAGTTATTTTTCAAAAG+TGG | + | chr4_4:8232836-8232855 | Msa0667650:intron | 25.0% |
| !!! | CATGTAGTTTTCTAATTTGT+AGG | + | chr4_4:8233003-8233022 | Msa0667650:intron | 25.0% |
| GAGAAAAAAATTACCAGAAG+GGG | - | chr4_4:8232371-8232390 | None:intergenic | 30.0% | |
| GGAGAAAAAAATTACCAGAA+GGG | - | chr4_4:8232372-8232391 | None:intergenic | 30.0% | |
| TGGAGAAAAAAATTACCAGA+AGG | - | chr4_4:8232373-8232392 | None:intergenic | 30.0% | |
| ! | TGTTTTCTTGTAGTGTATTG+TGG | + | chr4_4:8232474-8232493 | Msa0667650:intron | 30.0% |
| ACATTACATTTCCAAACGAA+TGG | - | chr4_4:8232539-8232558 | None:intergenic | 30.0% | |
| ! | GATGCGTATCCTTTTATAAA+AGG | - | chr4_4:8232779-8232798 | None:intergenic | 30.0% |
| GGTTATAAAATAGGCTTACA+TGG | + | chr4_4:8232857-8232876 | Msa0667650:intron | 30.0% | |
| ATCCATTTAACTCATGTTTC+TGG | + | chr4_4:8232936-8232955 | Msa0667650:intron | 30.0% | |
| !!! | TGATTTTTTAGTCCATGAAG+AGG | + | chr4_4:8232971-8232990 | Msa0667650:intron | 30.0% |
| !!! | GATTTTTTAGTCCATGAAGA+GGG | + | chr4_4:8232972-8232991 | Msa0667650:intron | 30.0% |
| TTATTTGATGTTATCAGGCA+AGG | + | chr4_4:8233182-8233201 | Msa0667650:intron | 30.0% | |
| GAGAAAAAAATTACCAGAAG+GGG | - | chr4_4:8232371-8232390 | None:intergenic | 30.0% | |
| GGAGAAAAAAATTACCAGAA+GGG | - | chr4_4:8232372-8232391 | None:intergenic | 30.0% | |
| TGGAGAAAAAAATTACCAGA+AGG | - | chr4_4:8232373-8232392 | None:intergenic | 30.0% | |
| ! | TGTTTTCTTGTAGTGTATTG+TGG | + | chr4_4:8232474-8232493 | Msa0667650:intron | 30.0% |
| ACATTACATTTCCAAACGAA+TGG | - | chr4_4:8232539-8232558 | None:intergenic | 30.0% | |
| ! | GATGCGTATCCTTTTATAAA+AGG | - | chr4_4:8232779-8232798 | None:intergenic | 30.0% |
| GGTTATAAAATAGGCTTACA+TGG | + | chr4_4:8232857-8232876 | Msa0667650:intron | 30.0% | |
| ATCCATTTAACTCATGTTTC+TGG | + | chr4_4:8232936-8232955 | Msa0667650:intron | 30.0% | |
| !!! | TGATTTTTTAGTCCATGAAG+AGG | + | chr4_4:8232971-8232990 | Msa0667650:intron | 30.0% |
| !!! | GATTTTTTAGTCCATGAAGA+GGG | + | chr4_4:8232972-8232991 | Msa0667650:intron | 30.0% |
| TTATTTGATGTTATCAGGCA+AGG | + | chr4_4:8233182-8233201 | Msa0667650:intron | 30.0% | |
| AAAAAATTACCAGAAGGGGT+TGG | - | chr4_4:8232367-8232386 | None:intergenic | 35.0% | |
| TATTGAGTGTATGTTCGGTT+AGG | + | chr4_4:8232605-8232624 | Msa0667650:intron | 35.0% | |
| GACCAGAAACATGAGTTAAA+TGG | - | chr4_4:8232941-8232960 | None:intergenic | 35.0% | |
| !!! | ATGTTTTTAGTCCCTCTTCA+TGG | - | chr4_4:8232986-8233005 | None:intergenic | 35.0% |
| ATCTTCAAGCTTCTCTTTCT+TGG | - | chr4_4:8233266-8233285 | None:intergenic | 35.0% | |
| GAAAGAGAAGCTTGAAGATA+AGG | + | chr4_4:8233267-8233286 | Msa0667650:CDS | 35.0% | |
| AAAAAATTACCAGAAGGGGT+TGG | - | chr4_4:8232367-8232386 | None:intergenic | 35.0% | |
| TATTGAGTGTATGTTCGGTT+AGG | + | chr4_4:8232605-8232624 | Msa0667650:intron | 35.0% | |
| GACCAGAAACATGAGTTAAA+TGG | - | chr4_4:8232941-8232960 | None:intergenic | 35.0% | |
| !!! | ATGTTTTTAGTCCCTCTTCA+TGG | - | chr4_4:8232986-8233005 | None:intergenic | 35.0% |
| ATCTTCAAGCTTCTCTTTCT+TGG | - | chr4_4:8233266-8233285 | None:intergenic | 35.0% | |
| GAAAGAGAAGCTTGAAGATA+AGG | + | chr4_4:8233267-8233286 | Msa0667650:CDS | 35.0% | |
| ATTGGGATTGAGAGAAGGAA+AGG | - | chr4_4:8232282-8232301 | None:intergenic | 40.0% | |
| AAGAGATTGGGATTGAGAGA+AGG | - | chr4_4:8232287-8232306 | None:intergenic | 40.0% | |
| GATTGGTGAGTGAAGAGATT+GGG | - | chr4_4:8232299-8232318 | None:intergenic | 40.0% | |
| TGATTGGTGAGTGAAGAGAT+TGG | - | chr4_4:8232300-8232319 | None:intergenic | 40.0% | |
| AGGTGATAGGAAAACTGCTA+AGG | + | chr4_4:8232500-8232519 | Msa0667650:CDS | 40.0% | |
| GGTGATAGGAAAACTGCTAA+GGG | + | chr4_4:8232501-8232520 | Msa0667650:CDS | 40.0% | |
| GTGATAGGAAAACTGCTAAG+GGG | + | chr4_4:8232502-8232521 | Msa0667650:CDS | 40.0% | |
| ! | TTACACCTGCATGAAGCATT+TGG | + | chr4_4:8232816-8232835 | Msa0667650:intron | 40.0% |
| AACTACCAAATGCTTCATGC+AGG | - | chr4_4:8232824-8232843 | None:intergenic | 40.0% | |
| ! | TTCTCTTTCTTGGTAGCATC+TGG | - | chr4_4:8233256-8233275 | None:intergenic | 40.0% |
| ATTGGGATTGAGAGAAGGAA+AGG | - | chr4_4:8232282-8232301 | None:intergenic | 40.0% | |
| AAGAGATTGGGATTGAGAGA+AGG | - | chr4_4:8232287-8232306 | None:intergenic | 40.0% | |
| GATTGGTGAGTGAAGAGATT+GGG | - | chr4_4:8232299-8232318 | None:intergenic | 40.0% | |
| TGATTGGTGAGTGAAGAGAT+TGG | - | chr4_4:8232300-8232319 | None:intergenic | 40.0% | |
| AGGTGATAGGAAAACTGCTA+AGG | + | chr4_4:8232500-8232519 | Msa0667650:CDS | 40.0% | |
| GGTGATAGGAAAACTGCTAA+GGG | + | chr4_4:8232501-8232520 | Msa0667650:CDS | 40.0% | |
| GTGATAGGAAAACTGCTAAG+GGG | + | chr4_4:8232502-8232521 | Msa0667650:CDS | 40.0% | |
| ! | TTACACCTGCATGAAGCATT+TGG | + | chr4_4:8232816-8232835 | Msa0667650:intron | 40.0% |
| AACTACCAAATGCTTCATGC+AGG | - | chr4_4:8232824-8232843 | None:intergenic | 40.0% | |
| ! | TTCTCTTTCTTGGTAGCATC+TGG | - | chr4_4:8233256-8233275 | None:intergenic | 40.0% |
| !! | AGTTGAAGAGATAGTGGGGA+AGG | - | chr4_4:8232241-8232260 | None:intergenic | 45.0% |
| GTGGAGTTGAAGAGATAGTG+GGG | - | chr4_4:8232245-8232264 | None:intergenic | 45.0% | |
| CGTGGAGTTGAAGAGATAGT+GGG | - | chr4_4:8232246-8232265 | None:intergenic | 45.0% | |
| AAAGGTGAGAAGAAGAAGCG+TGG | - | chr4_4:8232264-8232283 | None:intergenic | 45.0% | |
| GGGACTGATGAAGTGATGAT+TGG | - | chr4_4:8232316-8232335 | None:intergenic | 45.0% | |
| AAGCGACAAGGTTGAAGAGA+GGG | - | chr4_4:8232341-8232360 | None:intergenic | 45.0% | |
| AAAGCGACAAGGTTGAAGAG+AGG | - | chr4_4:8232342-8232361 | None:intergenic | 45.0% | |
| CTTGTAGTGTATTGTGGCAG+AGG | + | chr4_4:8232480-8232499 | Msa0667650:intron | 45.0% | |
| TGTATTGTGGCAGAGGTGAT+AGG | + | chr4_4:8232487-8232506 | Msa0667650:CDS | 45.0% | |
| GGAAAACTGCTAAGGGGAAA+CGG | + | chr4_4:8232508-8232527 | Msa0667650:CDS | 45.0% | |
| AAACGGTTCAGCCATTCGTT+TGG | + | chr4_4:8232525-8232544 | Msa0667650:CDS | 45.0% | |
| AAGGCCAAGGAACAAGAACA+AGG | + | chr4_4:8233201-8233220 | Msa0667650:CDS | 45.0% | |
| AGGCCAAGGAACAAGAACAA+GGG | + | chr4_4:8233202-8233221 | Msa0667650:CDS | 45.0% | |
| GTTCCCTTGTTCTTGTTCCT+TGG | - | chr4_4:8233208-8233227 | None:intergenic | 45.0% | |
| AGGAACAAGAACAAGGGAAC+AGG | + | chr4_4:8233208-8233227 | Msa0667650:CDS | 45.0% | |
| TCTGGTGGAGCATAAATCCT+TGG | - | chr4_4:8233238-8233257 | None:intergenic | 45.0% | |
| ! | TCTTTCTTGGTAGCATCTGG+TGG | - | chr4_4:8233253-8233272 | None:intergenic | 45.0% |
| !! | AGTTGAAGAGATAGTGGGGA+AGG | - | chr4_4:8232241-8232260 | None:intergenic | 45.0% |
| GTGGAGTTGAAGAGATAGTG+GGG | - | chr4_4:8232245-8232264 | None:intergenic | 45.0% | |
| CGTGGAGTTGAAGAGATAGT+GGG | - | chr4_4:8232246-8232265 | None:intergenic | 45.0% | |
| AAAGGTGAGAAGAAGAAGCG+TGG | - | chr4_4:8232264-8232283 | None:intergenic | 45.0% | |
| GGGACTGATGAAGTGATGAT+TGG | - | chr4_4:8232316-8232335 | None:intergenic | 45.0% | |
| AAGCGACAAGGTTGAAGAGA+GGG | - | chr4_4:8232341-8232360 | None:intergenic | 45.0% | |
| AAAGCGACAAGGTTGAAGAG+AGG | - | chr4_4:8232342-8232361 | None:intergenic | 45.0% | |
| CTTGTAGTGTATTGTGGCAG+AGG | + | chr4_4:8232480-8232499 | Msa0667650:intron | 45.0% | |
| TGTATTGTGGCAGAGGTGAT+AGG | + | chr4_4:8232487-8232506 | Msa0667650:CDS | 45.0% | |
| GGAAAACTGCTAAGGGGAAA+CGG | + | chr4_4:8232508-8232527 | Msa0667650:CDS | 45.0% | |
| AAACGGTTCAGCCATTCGTT+TGG | + | chr4_4:8232525-8232544 | Msa0667650:CDS | 45.0% | |
| AAGGCCAAGGAACAAGAACA+AGG | + | chr4_4:8233201-8233220 | Msa0667650:CDS | 45.0% | |
| AGGCCAAGGAACAAGAACAA+GGG | + | chr4_4:8233202-8233221 | Msa0667650:CDS | 45.0% | |
| GTTCCCTTGTTCTTGTTCCT+TGG | - | chr4_4:8233208-8233227 | None:intergenic | 45.0% | |
| AGGAACAAGAACAAGGGAAC+AGG | + | chr4_4:8233208-8233227 | Msa0667650:CDS | 45.0% | |
| TCTGGTGGAGCATAAATCCT+TGG | - | chr4_4:8233238-8233257 | None:intergenic | 45.0% | |
| ! | TCTTTCTTGGTAGCATCTGG+TGG | - | chr4_4:8233253-8233272 | None:intergenic | 45.0% |
| TAGAAGCAGCGATGATGCCA+TGG | - | chr4_4:8232212-8232231 | None:intergenic | 50.0% | |
| GCGTGGAGTTGAAGAGATAG+TGG | - | chr4_4:8232247-8232266 | None:intergenic | 50.0% | |
| ACAAGGTTGAAGAGAGGGTG+GGG | - | chr4_4:8232336-8232355 | None:intergenic | 50.0% | |
| GACAAGGTTGAAGAGAGGGT+GGG | - | chr4_4:8232337-8232356 | None:intergenic | 50.0% | |
| GATGTTATCAGGCAAGGCCA+AGG | + | chr4_4:8233188-8233207 | Msa0667650:intron | 50.0% | |
| GGTGGAGCATAAATCCTTGG+TGG | - | chr4_4:8233235-8233254 | None:intergenic | 50.0% | |
| TAGAAGCAGCGATGATGCCA+TGG | - | chr4_4:8232212-8232231 | None:intergenic | 50.0% | |
| GCGTGGAGTTGAAGAGATAG+TGG | - | chr4_4:8232247-8232266 | None:intergenic | 50.0% | |
| ACAAGGTTGAAGAGAGGGTG+GGG | - | chr4_4:8232336-8232355 | None:intergenic | 50.0% | |
| GACAAGGTTGAAGAGAGGGT+GGG | - | chr4_4:8232337-8232356 | None:intergenic | 50.0% | |
| GATGTTATCAGGCAAGGCCA+AGG | + | chr4_4:8233188-8233207 | Msa0667650:intron | 50.0% | |
| GGTGGAGCATAAATCCTTGG+TGG | - | chr4_4:8233235-8233254 | None:intergenic | 50.0% | |
| CGACAAGGTTGAAGAGAGGG+TGG | - | chr4_4:8232338-8232357 | None:intergenic | 55.0% | |
| !! | AGGGGTTGGTGAAAGCGACA+AGG | - | chr4_4:8232353-8232372 | None:intergenic | 55.0% |
| TCGCTTTCACCAACCCCTTC+TGG | + | chr4_4:8232355-8232374 | Msa0667650:CDS | 55.0% | |
| ACAAGGGAACAGGACCACCA+AGG | + | chr4_4:8233218-8233237 | Msa0667650:CDS | 55.0% | |
| CGACAAGGTTGAAGAGAGGG+TGG | - | chr4_4:8232338-8232357 | None:intergenic | 55.0% | |
| !! | AGGGGTTGGTGAAAGCGACA+AGG | - | chr4_4:8232353-8232372 | None:intergenic | 55.0% |
| TCGCTTTCACCAACCCCTTC+TGG | + | chr4_4:8232355-8232374 | Msa0667650:CDS | 55.0% | |
| ACAAGGGAACAGGACCACCA+AGG | + | chr4_4:8233218-8233237 | Msa0667650:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 8232205 | 8233333 | 8232205 | ID=Msa0667650;Name=Msa0667650 |
| chr4_4 | mRNA | 8232205 | 8233333 | 8232205 | ID=Msa0667650-mRNA-1;Parent=Msa0667650;Name=Msa0667650-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|3|0|123 |
| chr4_4 | exon | 8232205 | 8232376 | 8232205 | ID=Msa0667650-mRNA-1:exon:2661;Parent=Msa0667650-mRNA-1 |
| chr4_4 | exon | 8232487 | 8232551 | 8232487 | ID=Msa0667650-mRNA-1:exon:2662;Parent=Msa0667650-mRNA-1 |
| chr4_4 | exon | 8233199 | 8233333 | 8233199 | ID=Msa0667650-mRNA-1:exon:2663;Parent=Msa0667650-mRNA-1 |
| chr4_4 | CDS | 8232205 | 8232376 | 8232205 | ID=Msa0667650-mRNA-1:cds;Parent=Msa0667650-mRNA-1 |
| chr4_4 | CDS | 8232487 | 8232551 | 8232487 | ID=Msa0667650-mRNA-1:cds;Parent=Msa0667650-mRNA-1 |
| chr4_4 | CDS | 8233199 | 8233333 | 8233199 | ID=Msa0667650-mRNA-1:cds;Parent=Msa0667650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
