Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1030420 | XP_024626991.1 | 86.525 | 141 | 11 | 3 | 1 | 136 | 1 | 138 | 7.06e-71 | 219 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1030420 | A0A396H3D5 | 86.525 | 141 | 11 | 3 | 1 | 136 | 1 | 138 | 3.37e-71 | 219 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0667650 | Msa1030420 | 0.847218 | 1.329102e-59 | -8.615850e-47 |
| Msa0804690 | Msa1030420 | 0.808665 | 2.770637e-50 | -8.615850e-47 |
| Msa0168410 | Msa1030420 | 0.837709 | 4.429494e-57 | -8.615850e-47 |
| Msa0597510 | Msa1030420 | 0.813404 | 2.604019e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1030420 | MtrunA17_Chr7g0251441 | 86.525 | 141 | 11 | 3 | 1 | 136 | 1 | 138 | 6.49e-75 | 219 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1030420 | AT5G38060.1 | 87.500 | 80 | 10 | 0 | 57 | 136 | 55 | 134 | 3.15e-50 | 157 |
| Msa1030420 | AT5G38060.2 | 75.000 | 80 | 8 | 1 | 57 | 136 | 55 | 122 | 9.95e-39 | 127 |
Find 48 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATTTCATACTGCCCATTT+TGG | 0.189700 | 7_1:-64482770 | Msa1030420:CDS |
| TAAATATGAGACTAAAATTA+AGG | 0.255357 | 7_1:-64480200 | Msa1030420:three_prime_UTR |
| GGTTGAGTTGAGGGTCAAAT+TGG | 0.278055 | 7_1:+64482807 | None:intergenic |
| CAAGTGGGGTACCTCCAAAA+TGG | 0.326039 | 7_1:+64482756 | None:intergenic |
| GCCAGAGCCAGGAGTGTTCA+TGG | 0.356277 | 7_1:+64480550 | None:intergenic |
| TGCTCCAATTCCCACCTATT+CGG | 0.370455 | 7_1:-64482895 | Msa1030420:CDS |
| CTAAAATTAAGGAAATTATA+TGG | 0.384185 | 7_1:-64480189 | Msa1030420:three_prime_UTR |
| TCCGAAGATCCATTTGATAT+CGG | 0.400652 | 7_1:-64480497 | Msa1030420:CDS |
| GTTGAGTTGAGGGTCAAATT+GGG | 0.401053 | 7_1:+64482808 | None:intergenic |
| AGTTTGAGAGTGTGCATGAA+GGG | 0.401454 | 7_1:-64480577 | Msa1030420:CDS |
| ATTTGAGATTGAAAAGCAAA+AGG | 0.417013 | 7_1:+64482944 | None:intergenic |
| CAAGAGGGTGGTTGAGTTGA+GGG | 0.421241 | 7_1:+64482798 | None:intergenic |
| CTGGCAAAGTTCTTCAGTAT+TGG | 0.426658 | 7_1:-64480532 | Msa1030420:CDS |
| TTTGAGATTGAAAAGCAAAA+GGG | 0.427124 | 7_1:+64482945 | None:intergenic |
| GTGATTCACTTTCTCTGTTG+AGG | 0.427547 | 7_1:-64480419 | Msa1030420:three_prime_UTR |
| AGTTCTGAGGTTGATGCTAC+TGG | 0.432541 | 7_1:+64482847 | None:intergenic |
| TGTTGCTCAGTCGAAATACT+TGG | 0.432851 | 7_1:-64480279 | Msa1030420:three_prime_UTR |
| AACACCGAATAGGTGGGAAT+TGG | 0.447749 | 7_1:+64482891 | None:intergenic |
| ACCGATATCAAATGGATCTT+CGG | 0.448486 | 7_1:+64480496 | None:intergenic |
| TCTTGTTATCTCTGTTCCCA+TGG | 0.452422 | 7_1:-64483020 | Msa1030420:exon |
| CTTCAGTATTGGCATTGTTG+TGG | 0.453129 | 7_1:-64480521 | Msa1030420:CDS |
| GAAAGTGAATCACAGATTCA+TGG | 0.461613 | 7_1:+64480429 | None:intergenic |
| ACCATGAACACTCCTGGCTC+TGG | 0.463937 | 7_1:-64480551 | Msa1030420:CDS |
| CAAGTGTGAGCAATTTATGT+TGG | 0.464095 | 7_1:+64482916 | None:intergenic |
| AAGTGTGAGCAATTTATGTT+GGG | 0.472239 | 7_1:+64482917 | None:intergenic |
| TGAAGAACTTTGCCAGAGCC+AGG | 0.482219 | 7_1:+64480539 | None:intergenic |
| TCAATGGAGCAGGCCATGAA+TGG | 0.490113 | 7_1:+64480252 | None:intergenic |
| TCTAAATCAGTCATCATATG+AGG | 0.493652 | 7_1:+64480454 | None:intergenic |
| AAGTGGGGTACCTCCAAAAT+GGG | 0.496242 | 7_1:+64482757 | None:intergenic |
| GCGGTGCAACCGATATCAAA+TGG | 0.498985 | 7_1:+64480488 | None:intergenic |
| TGCAGTTCTTGCAAGTTCTG+AGG | 0.514501 | 7_1:+64482834 | None:intergenic |
| GAAGTTGAGGAACACCGAAT+AGG | 0.514958 | 7_1:+64482881 | None:intergenic |
| AAGTTTGAGAGTGTGCATGA+AGG | 0.529792 | 7_1:-64480578 | Msa1030420:CDS |
| GCAAGAGGGTGGTTGAGTTG+AGG | 0.539179 | 7_1:+64482797 | None:intergenic |
| TTGAGATTGAAAAGCAAAAG+GGG | 0.541761 | 7_1:+64482946 | None:intergenic |
| GTGAGAAAACATTAGAGCCA+TGG | 0.553787 | 7_1:+64483003 | None:intergenic |
| GTTGAGGAACACCGAATAGG+TGG | 0.554232 | 7_1:+64482884 | None:intergenic |
| TGAGAAAACATTAGAGCCAT+GGG | 0.558269 | 7_1:+64483004 | None:intergenic |
| TTGTTGCAATTAAGATGAAG+AGG | 0.560786 | 7_1:+64482971 | None:intergenic |
| GTTTGAGAGTGTGCATGAAG+GGG | 0.579414 | 7_1:-64480576 | Msa1030420:CDS |
| TTGCAATTAAGATGAAGAGG+AGG | 0.605087 | 7_1:+64482974 | None:intergenic |
| ATATGAGGAGTGAGGAGAAG+CGG | 0.637289 | 7_1:+64480469 | None:intergenic |
| GTATGAAATCGACAAGCAAG+AGG | 0.638478 | 7_1:+64482782 | None:intergenic |
| TTTGAGAGTGTGCATGAAGG+GGG | 0.644148 | 7_1:-64480575 | Msa1030420:CDS |
| TTGAGGAACACCGAATAGGT+GGG | 0.650195 | 7_1:+64482885 | None:intergenic |
| CAGTCATCATATGAGGAGTG+AGG | 0.662036 | 7_1:+64480461 | None:intergenic |
| GAAATCGACAAGCAAGAGGG+TGG | 0.667295 | 7_1:+64482786 | None:intergenic |
| TATGAAATCGACAAGCAAGA+GGG | 0.673289 | 7_1:+64482783 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATAAAGCTTAGTTTATA+AGG | - | chr7_1:64480563-64480582 | Msa1030420:CDS | 15.0% |
| !!! | TTATTAAGTTTCATTTGTTA+TGG | - | chr7_1:64480926-64480945 | Msa1030420:intron | 15.0% |
| !!! | ATTTGTGATAATTTTGAAAA+GGG | + | chr7_1:64481468-64481487 | None:intergenic | 15.0% |
| !! | TGATTTATGATAGAATATTA+TGG | + | chr7_1:64482251-64482270 | None:intergenic | 15.0% |
| !!! | TTTATAAAAGTTTTTCACAT+TGG | + | chr7_1:64483005-64483024 | None:intergenic | 15.0% |
| !! | TAAATATGAGACTAAAATTA+AGG | - | chr7_1:64483021-64483040 | Msa1030420:exon | 15.0% |
| !! | CTAAAATTAAGGAAATTATA+TGG | - | chr7_1:64483032-64483051 | Msa1030420:five_prime_UTR | 15.0% |
| !!! | GTGATATTAATTTGAGAAAA+TGG | - | chr7_1:64480649-64480668 | Msa1030420:intron | 20.0% |
| !! | ATGAAGAAAGTTAACAAAAA+TGG | + | chr7_1:64481103-64481122 | None:intergenic | 20.0% |
| !! | ATTTCAAATATCAAATACTG+AGG | + | chr7_1:64481142-64481161 | None:intergenic | 20.0% |
| !! | AAGTAAATTGAACTTAATTC+CGG | + | chr7_1:64481196-64481215 | None:intergenic | 20.0% |
| !!! | GATTTGTGATAATTTTGAAA+AGG | + | chr7_1:64481469-64481488 | None:intergenic | 20.0% |
| !! | AATAGCTTTCATCATTATAT+AGG | - | chr7_1:64481553-64481572 | Msa1030420:intron | 20.0% |
| !! | TTTAAGAATACTCGATTAAT+TGG | - | chr7_1:64481597-64481616 | Msa1030420:intron | 20.0% |
| !! | AACTTAAGTTTGTAATCAAA+AGG | + | chr7_1:64481949-64481968 | None:intergenic | 20.0% |
| !! | AAATTGAAACTATTACCAAA+AGG | + | chr7_1:64482486-64482505 | None:intergenic | 20.0% |
| !!! | TTTTCAGAAACTATTGAATA+AGG | + | chr7_1:64482872-64482891 | None:intergenic | 20.0% |
| !! | TTTGAGATTGAAAAGCAAAA+GGG | + | chr7_1:64480279-64480298 | None:intergenic | 25.0% |
| !! | ATTTGAGATTGAAAAGCAAA+AGG | + | chr7_1:64480280-64480299 | None:intergenic | 25.0% |
| ! | ATGACTAAACTTGGAAATAT+GGG | - | chr7_1:64481236-64481255 | Msa1030420:intron | 25.0% |
| ! | TTGAATTAGTGAGGTATATA+AGG | - | chr7_1:64481383-64481402 | Msa1030420:intron | 25.0% |
| ! | TGAATTAGTGAGGTATATAA+GGG | - | chr7_1:64481384-64481403 | Msa1030420:intron | 25.0% |
| ! | TCAATTATCTGATAACTGAT+TGG | - | chr7_1:64481732-64481751 | Msa1030420:intron | 25.0% |
| ! | TTGTAATCAAAAGGTCTATT+AGG | + | chr7_1:64481940-64481959 | None:intergenic | 25.0% |
| !!! | TGTTGATTCTCTTACTTTTA+TGG | - | chr7_1:64482002-64482021 | Msa1030420:intron | 25.0% |
| ! | CTTTACAGAAATCAATGTTA+TGG | + | chr7_1:64482030-64482049 | None:intergenic | 25.0% |
| ! | TGGTTACAAAATTCATATGA+TGG | + | chr7_1:64482180-64482199 | None:intergenic | 25.0% |
| ! | TATGATAGAATATTATGGTC+TGG | + | chr7_1:64482246-64482265 | None:intergenic | 25.0% |
| ! | ATATAAACATAGAGGTCAAT+GGG | + | chr7_1:64482287-64482306 | None:intergenic | 25.0% |
| ! | AATATAAACATAGAGGTCAA+TGG | + | chr7_1:64482288-64482307 | None:intergenic | 25.0% |
| ! | GACCTCTATGTTTATATTAA+CGG | - | chr7_1:64482290-64482309 | Msa1030420:intron | 25.0% |
| !! | AATTTTCACGAAACAGATTT+TGG | - | chr7_1:64482345-64482364 | Msa1030420:intron | 25.0% |
| !! | ATTTTCACGAAACAGATTTT+GGG | - | chr7_1:64482346-64482365 | Msa1030420:intron | 25.0% |
| TTGTTGCAATTAAGATGAAG+AGG | + | chr7_1:64480253-64480272 | None:intergenic | 30.0% | |
| TTGAGATTGAAAAGCAAAAG+GGG | + | chr7_1:64480278-64480297 | None:intergenic | 30.0% | |
| AAGTGTGAGCAATTTATGTT+GGG | + | chr7_1:64480307-64480326 | None:intergenic | 30.0% | |
| ATGCATAAGAAAAAGCAAGT+GGG | + | chr7_1:64480483-64480502 | None:intergenic | 30.0% | |
| AATGCATAAGAAAAAGCAAG+TGG | + | chr7_1:64480484-64480503 | None:intergenic | 30.0% | |
| CCTTTGACTACTCAAATATA+AGG | + | chr7_1:64480848-64480867 | None:intergenic | 30.0% | |
| CCTTATATTTGAGTAGTCAA+AGG | - | chr7_1:64480845-64480864 | Msa1030420:intron | 30.0% | |
| CTTAGTATAACTGCTAAAGT+AGG | + | chr7_1:64480989-64481008 | None:intergenic | 30.0% | |
| ACTTATGGTGTGAAAATGAT+TGG | - | chr7_1:64481027-64481046 | Msa1030420:intron | 30.0% | |
| AGTTAACAAAAATGGCATAC+AGG | + | chr7_1:64481095-64481114 | None:intergenic | 30.0% | |
| !! | GTTCAATTTACTTTAAGACC+TGG | - | chr7_1:64481203-64481222 | Msa1030420:intron | 30.0% |
| CATGACTAAACTTGGAAATA+TGG | - | chr7_1:64481235-64481254 | Msa1030420:intron | 30.0% | |
| !! | GTTGTTTTCTTGAATTAGTG+AGG | - | chr7_1:64481374-64481393 | Msa1030420:intron | 30.0% |
| AAGAAAGTTAGCAAGGAAAA+AGG | + | chr7_1:64481498-64481517 | None:intergenic | 30.0% | |
| TAACTTTCTTCTTGGAGATT+GGG | - | chr7_1:64481508-64481527 | Msa1030420:intron | 30.0% | |
| !!! | ATATGATGCCTTTTTTACTC+AGG | - | chr7_1:64481657-64481676 | Msa1030420:intron | 30.0% |
| TACACACTACTTTAATTCTG+TGG | - | chr7_1:64481774-64481793 | Msa1030420:intron | 30.0% | |
| ACACACTACTTTAATTCTGT+GGG | - | chr7_1:64481775-64481794 | Msa1030420:intron | 30.0% | |
| TTATATAGAGCTTGTGTTGT+AGG | - | chr7_1:64481816-64481835 | Msa1030420:intron | 30.0% | |
| TATATAGAGCTTGTGTTGTA+GGG | - | chr7_1:64481817-64481836 | Msa1030420:intron | 30.0% | |
| TGTAAAGCTGAAGTTAACAA+AGG | - | chr7_1:64482043-64482062 | Msa1030420:intron | 30.0% | |
| AACAAAGGATCTACTATGAA+AGG | - | chr7_1:64482058-64482077 | Msa1030420:intron | 30.0% | |
| TGTGAGATAATGCAATTAGA+AGG | - | chr7_1:64482094-64482113 | Msa1030420:intron | 30.0% | |
| GTAGAGAAACTAAATCTTGT+TGG | - | chr7_1:64482130-64482149 | Msa1030420:intron | 30.0% | |
| AAATCTTGTTGGATCCATAT+TGG | - | chr7_1:64482141-64482160 | Msa1030420:intron | 30.0% | |
| ! | GTCTACATTTTGTACCAATA+TGG | + | chr7_1:64482158-64482177 | None:intergenic | 30.0% |
| TAACCAAACATAAACCAACT+AGG | - | chr7_1:64482194-64482213 | Msa1030420:intron | 30.0% | |
| TGCCGTTAATATAAACATAG+AGG | + | chr7_1:64482295-64482314 | None:intergenic | 30.0% | |
| CGTGAAAATTCACAAACAAA+AGG | + | chr7_1:64482335-64482354 | None:intergenic | 30.0% | |
| ACTTTCATCAATGCAATGAT+TGG | + | chr7_1:64482512-64482531 | None:intergenic | 30.0% | |
| TCTAAATCAGTCATCATATG+AGG | + | chr7_1:64482770-64482789 | None:intergenic | 30.0% | |
| !!! | GGATTTTTTTTACAAGAGCT+CGG | + | chr7_1:64482851-64482870 | None:intergenic | 30.0% |
| !! | AATACTTGGTTTTCCATTCA+TGG | - | chr7_1:64482956-64482975 | Msa1030420:CDS | 30.0% |
| TGAGAAAACATTAGAGCCAT+GGG | + | chr7_1:64480220-64480239 | None:intergenic | 35.0% | |
| TTGCAATTAAGATGAAGAGG+AGG | + | chr7_1:64480250-64480269 | None:intergenic | 35.0% | |
| CAAGTGTGAGCAATTTATGT+TGG | + | chr7_1:64480308-64480327 | None:intergenic | 35.0% | |
| TATGAAATCGACAAGCAAGA+GGG | + | chr7_1:64480441-64480460 | None:intergenic | 35.0% | |
| TGCATAAGAAAAAGCAAGTG+GGG | + | chr7_1:64480482-64480501 | None:intergenic | 35.0% | |
| ACACCGATACTTCAAATTGA+AGG | + | chr7_1:64480762-64480781 | None:intergenic | 35.0% | |
| AATGTACGTCGTTGAACTTA+TGG | - | chr7_1:64481012-64481031 | Msa1030420:intron | 35.0% | |
| TATGGTGTGAAAATGATTGG+AGG | - | chr7_1:64481030-64481049 | Msa1030420:intron | 35.0% | |
| ATGGTGTGAAAATGATTGGA+GGG | - | chr7_1:64481031-64481050 | Msa1030420:intron | 35.0% | |
| ACTGCTGAATTACCAAGAAA+CGG | - | chr7_1:64481060-64481079 | Msa1030420:intron | 35.0% | |
| TTAATTCCGGTGCAATACTA+GGG | + | chr7_1:64481183-64481202 | None:intergenic | 35.0% | |
| TGACAAAGCATGACTAAACT+TGG | - | chr7_1:64481227-64481246 | Msa1030420:intron | 35.0% | |
| TACTTTCAAACCTGACATGA+AGG | - | chr7_1:64481266-64481285 | Msa1030420:intron | 35.0% | |
| ! | GCAGCTTTAATGTTCTATCT+AGG | - | chr7_1:64481317-64481336 | Msa1030420:intron | 35.0% |
| TAGATAAACAATGCACTGAG+TGG | + | chr7_1:64481417-64481436 | None:intergenic | 35.0% | |
| TTCCTTGCTAACTTTCTTCT+TGG | - | chr7_1:64481500-64481519 | Msa1030420:intron | 35.0% | |
| CTAACTTTCTTCTTGGAGAT+TGG | - | chr7_1:64481507-64481526 | Msa1030420:intron | 35.0% | |
| TAATGCCTCCTGAGTAAAAA+AGG | + | chr7_1:64481668-64481687 | None:intergenic | 35.0% | |
| AATACATGAGTAACATCCAG+AGG | + | chr7_1:64481697-64481716 | None:intergenic | 35.0% | |
| CTGGATGTTACTCATGTATT+TGG | - | chr7_1:64481697-64481716 | Msa1030420:intron | 35.0% | |
| CACACTACTTTAATTCTGTG+GGG | - | chr7_1:64481776-64481795 | Msa1030420:intron | 35.0% | |
| ! | AGGTAACTGTGTTTTTCTGA+TGG | - | chr7_1:64481842-64481861 | Msa1030420:intron | 35.0% |
| !! | GACTTGTTGACATTCATATG+AGG | - | chr7_1:64481888-64481907 | Msa1030420:intron | 35.0% |
| CAAACATAAACCAACTAGGT+GGG | - | chr7_1:64482198-64482217 | Msa1030420:intron | 35.0% | |
| ! | AAGTTTAGTTCCGAGTTTAG+AGG | - | chr7_1:64482374-64482393 | Msa1030420:intron | 35.0% |
| TTAGAGGAAAACTTGGGTAA+TGG | - | chr7_1:64482390-64482409 | Msa1030420:intron | 35.0% | |
| ! | TGCTTCTGATGTACTTGTTA+TGG | - | chr7_1:64482437-64482456 | Msa1030420:intron | 35.0% |
| TGGTTATTGTCGTGACATTT+AGG | - | chr7_1:64482457-64482476 | Msa1030420:intron | 35.0% | |
| !! | GTGACATTTAGGATTCCTTT+TGG | - | chr7_1:64482468-64482487 | Msa1030420:intron | 35.0% |
| ! | TTTCTATTTTCCTCAACCAC+AGG | - | chr7_1:64482607-64482626 | Msa1030420:intron | 35.0% |
| TCCGAAGATCCATTTGATAT+CGG | - | chr7_1:64482724-64482743 | Msa1030420:intron | 35.0% | |
| ACCGATATCAAATGGATCTT+CGG | + | chr7_1:64482728-64482747 | None:intergenic | 35.0% | |
| GAAAGTGAATCACAGATTCA+TGG | + | chr7_1:64482795-64482814 | None:intergenic | 35.0% | |
| ! | TCTTGTTATCTCTGTTCCCA+TGG | - | chr7_1:64480201-64480220 | Msa1030420:three_prime_UTR | 40.0% |
| GTGAGAAAACATTAGAGCCA+TGG | + | chr7_1:64480221-64480240 | None:intergenic | 40.0% | |
| !!! | GGTTTTGTTGTTGGAAGTTG+AGG | + | chr7_1:64480356-64480375 | None:intergenic | 40.0% |
| !!! | GATGCTACTGGTTTTGTTGT+TGG | + | chr7_1:64480365-64480384 | None:intergenic | 40.0% |
| !! | GTTGAGTTGAGGGTCAAATT+GGG | + | chr7_1:64480416-64480435 | None:intergenic | 40.0% |
| GTATGAAATCGACAAGCAAG+AGG | + | chr7_1:64480442-64480461 | None:intergenic | 40.0% | |
| ! | CGATTTCATACTGCCCATTT+TGG | - | chr7_1:64480451-64480470 | Msa1030420:exon | 40.0% |
| ! | TTTCATACTGCCCATTTTGG+AGG | - | chr7_1:64480454-64480473 | Msa1030420:exon | 40.0% |
| GCATTAAGCAGTACACATGT+TGG | - | chr7_1:64480688-64480707 | Msa1030420:intron | 40.0% | |
| ! | GCGCCTTCAATTTGAAGTAT+CGG | - | chr7_1:64480756-64480775 | Msa1030420:intron | 40.0% |
| TGGCTTCCAAAGTTGAGTAA+TGG | - | chr7_1:64480946-64480965 | Msa1030420:intron | 40.0% | |
| TGCTCACCATTACTCAACTT+TGG | + | chr7_1:64480955-64480974 | None:intergenic | 40.0% | |
| AAAGTTGAGTAATGGTGAGC+AGG | - | chr7_1:64480954-64480973 | Msa1030420:intron | 40.0% | |
| TGGTGTGAAAATGATTGGAG+GGG | - | chr7_1:64481032-64481051 | Msa1030420:intron | 40.0% | |
| TTGAAACCCTAGTATTGCAC+CGG | - | chr7_1:64481174-64481193 | Msa1030420:intron | 40.0% | |
| CTTAATTCCGGTGCAATACT+AGG | + | chr7_1:64481184-64481203 | None:intergenic | 40.0% | |
| TTCAAACCTGACATGAAGGA+AGG | - | chr7_1:64481270-64481289 | Msa1030420:intron | 40.0% | |
| GGTATGAGGTTCACAATGTA+CGG | - | chr7_1:64481295-64481314 | Msa1030420:intron | 40.0% | |
| TAAACAATGCACTGAGTGGA+AGG | + | chr7_1:64481413-64481432 | None:intergenic | 40.0% | |
| TATCTAGACCATGTTAGCCA+TGG | - | chr7_1:64481431-64481450 | Msa1030420:intron | 40.0% | |
| AAAGGGTTAGAAGAAAGCCA+TGG | + | chr7_1:64481451-64481470 | None:intergenic | 40.0% | |
| CTCCAAGAAGAAAGTTAGCA+AGG | + | chr7_1:64481505-64481524 | None:intergenic | 40.0% | |
| TTGGGTTCTTGAGTCTTGAT+TGG | - | chr7_1:64481526-64481545 | Msa1030420:intron | 40.0% | |
| !!! | TGATGCCTTTTTTACTCAGG+AGG | - | chr7_1:64481660-64481679 | Msa1030420:intron | 40.0% |
| CTACTTTAATTCTGTGGGGA+AGG | - | chr7_1:64481780-64481799 | Msa1030420:intron | 40.0% | |
| TTTAATTCTGTGGGGAAGGA+GGG | - | chr7_1:64481784-64481803 | Msa1030420:intron | 40.0% | |
| ! | TGTGTTGACATTTGTAGCTG+TGG | + | chr7_1:64481979-64481998 | None:intergenic | 40.0% |
| ! | AATGCAATTAGAAGGCACGT+AGG | - | chr7_1:64482102-64482121 | Msa1030420:intron | 40.0% |
| ! | ATTAGAAGGCACGTAGGTTT+AGG | - | chr7_1:64482108-64482127 | Msa1030420:intron | 40.0% |
| ! | CCACCTAGTTGGTTTATGTT+TGG | + | chr7_1:64482200-64482219 | None:intergenic | 40.0% |
| CCAAACATAAACCAACTAGG+TGG | - | chr7_1:64482197-64482216 | Msa1030420:intron | 40.0% | |
| TCCGAGTTTAGAGGAAAACT+TGG | - | chr7_1:64482383-64482402 | Msa1030420:intron | 40.0% | |
| ! | CCCAAGTTTTCCTCTAAACT+CGG | + | chr7_1:64482387-64482406 | None:intergenic | 40.0% |
| CCGAGTTTAGAGGAAAACTT+GGG | - | chr7_1:64482384-64482403 | Msa1030420:intron | 40.0% | |
| CTAGCTATCTAGACACAAGT+TGG | - | chr7_1:64482569-64482588 | Msa1030420:intron | 40.0% | |
| CTTTCTCTTAGTTTCTCCTG+TGG | + | chr7_1:64482626-64482645 | None:intergenic | 40.0% | |
| ! | AAGTTTGAGAGTGTGCATGA+AGG | - | chr7_1:64482643-64482662 | Msa1030420:intron | 40.0% |
| ! | AGTTTGAGAGTGTGCATGAA+GGG | - | chr7_1:64482644-64482663 | Msa1030420:intron | 40.0% |
| CTGGCAAAGTTCTTCAGTAT+TGG | - | chr7_1:64482689-64482708 | Msa1030420:intron | 40.0% | |
| !! | CTTCAGTATTGGCATTGTTG+TGG | - | chr7_1:64482700-64482719 | Msa1030420:intron | 40.0% |
| GTGATTCACTTTCTCTGTTG+AGG | - | chr7_1:64482802-64482821 | Msa1030420:CDS | 40.0% | |
| TGTTGCTCAGTCGAAATACT+TGG | - | chr7_1:64482942-64482961 | Msa1030420:CDS | 40.0% | |
| ! | CATTGGCATGCTTTTGTCAA+TGG | + | chr7_1:64482988-64483007 | None:intergenic | 40.0% |
| TGCTCCAATTCCCACCTATT+CGG | - | chr7_1:64480326-64480345 | Msa1030420:three_prime_UTR | 45.0% | |
| AACACCGAATAGGTGGGAAT+TGG | + | chr7_1:64480333-64480352 | None:intergenic | 45.0% | |
| TTGAGGAACACCGAATAGGT+GGG | + | chr7_1:64480339-64480358 | None:intergenic | 45.0% | |
| GAAGTTGAGGAACACCGAAT+AGG | + | chr7_1:64480343-64480362 | None:intergenic | 45.0% | |
| !! | AGTTCTGAGGTTGATGCTAC+TGG | + | chr7_1:64480377-64480396 | None:intergenic | 45.0% |
| TGCAGTTCTTGCAAGTTCTG+AGG | + | chr7_1:64480390-64480409 | None:intergenic | 45.0% | |
| !! | GGTTGAGTTGAGGGTCAAAT+TGG | + | chr7_1:64480417-64480436 | None:intergenic | 45.0% |
| ! | AAGTGGGGTACCTCCAAAAT+GGG | + | chr7_1:64480467-64480486 | None:intergenic | 45.0% |
| !! | CACATGTTGGTGTCAAGTGT+CGG | - | chr7_1:64480701-64480720 | Msa1030420:intron | 45.0% |
| ! | CTTCAAATTGAAGGCGCGTT+CGG | + | chr7_1:64480753-64480772 | None:intergenic | 45.0% |
| TGAAAGTCAAGTGTGCTGAG+TGG | - | chr7_1:64480812-64480831 | Msa1030420:intron | 45.0% | |
| GGTGTGAAAATGATTGGAGG+GGG | - | chr7_1:64481033-64481052 | Msa1030420:intron | 45.0% | |
| GTGTGAAAATGATTGGAGGG+GGG | - | chr7_1:64481034-64481053 | Msa1030420:intron | 45.0% | |
| TTAGTCATGCTTTGTCAGCC+AGG | + | chr7_1:64481224-64481243 | None:intergenic | 45.0% | |
| AACCTGACATGAAGGAAGGA+CGG | - | chr7_1:64481274-64481293 | Msa1030420:intron | 45.0% | |
| GAAGAAAGCCATGGCTAACA+TGG | + | chr7_1:64481442-64481461 | None:intergenic | 45.0% | |
| GGTTCTTGAGTCTTGATTGG+TGG | - | chr7_1:64481529-64481548 | Msa1030420:intron | 45.0% | |
| !! | GGAGGCATTAACATAACCTC+TGG | - | chr7_1:64481678-64481697 | Msa1030420:intron | 45.0% |
| CTTTAATTCTGTGGGGAAGG+AGG | - | chr7_1:64481783-64481802 | Msa1030420:intron | 45.0% | |
| CTTAGTTTCTCCTGTGGTTG+AGG | + | chr7_1:64482620-64482639 | None:intergenic | 45.0% | |
| ! | GTTTGAGAGTGTGCATGAAG+GGG | - | chr7_1:64482645-64482664 | Msa1030420:intron | 45.0% |
| ! | TTTGAGAGTGTGCATGAAGG+GGG | - | chr7_1:64482646-64482665 | Msa1030420:intron | 45.0% |
| ATATGAGGAGTGAGGAGAAG+CGG | + | chr7_1:64482755-64482774 | None:intergenic | 45.0% | |
| CAGTCATCATATGAGGAGTG+AGG | + | chr7_1:64482763-64482782 | None:intergenic | 45.0% | |
| ! | CATGCTTTTGTCAATGGAGC+AGG | + | chr7_1:64482982-64483001 | None:intergenic | 45.0% |
| GTTGAGGAACACCGAATAGG+TGG | + | chr7_1:64480340-64480359 | None:intergenic | 50.0% | |
| !! | CAAGAGGGTGGTTGAGTTGA+GGG | + | chr7_1:64480426-64480445 | None:intergenic | 50.0% |
| GAAATCGACAAGCAAGAGGG+TGG | + | chr7_1:64480438-64480457 | None:intergenic | 50.0% | |
| ! | CAAGTGGGGTACCTCCAAAA+TGG | + | chr7_1:64480468-64480487 | None:intergenic | 50.0% |
| TTACCAAGAAACGGCTGTCG+TGG | - | chr7_1:64481069-64481088 | Msa1030420:intron | 50.0% | |
| TACCGTCCTTCCTTCATGTC+AGG | + | chr7_1:64481279-64481298 | None:intergenic | 50.0% | |
| CATGAAGGAAGGACGGTATG+AGG | - | chr7_1:64481281-64481300 | Msa1030420:intron | 50.0% | |
| AGAGCTTGTGTTGTAGGGCA+AGG | - | chr7_1:64481822-64481841 | Msa1030420:intron | 50.0% | |
| AGTTGACTGACCCACCTAGT+TGG | + | chr7_1:64482211-64482230 | None:intergenic | 50.0% | |
| AGGTGGGTCAGTCAACTACA+TGG | - | chr7_1:64482214-64482233 | Msa1030420:intron | 50.0% | |
| TGAAGAACTTTGCCAGAGCC+AGG | + | chr7_1:64482685-64482704 | None:intergenic | 50.0% | |
| GCGGTGCAACCGATATCAAA+TGG | + | chr7_1:64482736-64482755 | None:intergenic | 50.0% | |
| TCAATGGAGCAGGCCATGAA+TGG | + | chr7_1:64482972-64482991 | None:intergenic | 50.0% | |
| ! | GCAAGAGGGTGGTTGAGTTG+AGG | + | chr7_1:64480427-64480446 | None:intergenic | 55.0% |
| GTCAAGTGTGCTGAGTGGTG+TGG | - | chr7_1:64480817-64480836 | Msa1030420:intron | 55.0% | |
| ACCATGAACACTCCTGGCTC+TGG | - | chr7_1:64482670-64482689 | Msa1030420:intron | 55.0% | |
| AGGCCACGACAGCCGTTTCT+TGG | + | chr7_1:64481075-64481094 | None:intergenic | 60.0% | |
| GGGGGAACCATGAACACTCC+TGG | - | chr7_1:64482664-64482683 | Msa1030420:intron | 60.0% | |
| !! | GCCAGAGCCAGGAGTGTTCA+TGG | + | chr7_1:64482674-64482693 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 64480163 | 64483080 | 64480163 | ID=Msa1030420;Name=Msa1030420 |
| chr7_1 | mRNA | 64480163 | 64483080 | 64480163 | ID=Msa1030420-mRNA-1;Parent=Msa1030420;Name=Msa1030420-mRNA-1;_AED=0.02;_eAED=0.02;_QI=57|1|1|1|0|1|2|297|136 |
| chr7_1 | exon | 64480163 | 64480614 | 64480163 | ID=Msa1030420-mRNA-1:exon:14133;Parent=Msa1030420-mRNA-1 |
| chr7_1 | exon | 64482768 | 64483080 | 64482768 | ID=Msa1030420-mRNA-1:exon:14132;Parent=Msa1030420-mRNA-1 |
| chr7_1 | five_prime_UTR | 64483024 | 64483080 | 64483024 | ID=Msa1030420-mRNA-1:five_prime_utr;Parent=Msa1030420-mRNA-1 |
| chr7_1 | CDS | 64482768 | 64483023 | 64482768 | ID=Msa1030420-mRNA-1:cds;Parent=Msa1030420-mRNA-1 |
| chr7_1 | CDS | 64480460 | 64480614 | 64480460 | ID=Msa1030420-mRNA-1:cds;Parent=Msa1030420-mRNA-1 |
| chr7_1 | three_prime_UTR | 64480163 | 64480459 | 64480163 | ID=Msa1030420-mRNA-1:three_prime_utr;Parent=Msa1030420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
