AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0532630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0532630 MtrunA17_Chr4g0006161 97.561 123 3 0 1 123 1 123 9.98e-84 240
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0532630 AT2G38140.1 50.420 119 57 1 5 123 2 118 4.08e-26 94.7

Find 58 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCATTTGCAATATACTATT+TGG 0.117600 4_1:+6928095 Msa0532630:three_prime_UTR
ATCTTCAAGCTTCTCTTTCT+TGG 0.182199 4_1:-6927961 None:intergenic
ATGATTTATAGTTTGAATTA+TGG 0.197194 4_1:+6928070 Msa0532630:three_prime_UTR
TCGCTTTCACCAACCCCTTC+TGG 0.306084 4_1:+6927058 Msa0532630:CDS
GTTCCCTTGTTCTTGTTCCT+TGG 0.334623 4_1:-6927903 None:intergenic
TTGCAAAGTGAACTCAAATA+AGG 0.336700 4_1:-6928132 None:intergenic
TTCTCTTTCTTGGTAGCATC+TGG 0.349140 4_1:-6927951 None:intergenic
TCCAAATAGTATATTGCAAA+TGG 0.394156 4_1:-6928096 None:intergenic
GAAAGAGAAGCTTGAAGATA+AGG 0.394365 4_1:+6927965 Msa0532630:CDS
AAACGGTTCAGCCATTCGTT+TGG 0.400874 4_1:+6927225 Msa0532630:CDS
ACATAATAGAGACTAAAATA+AGG 0.408810 4_1:-6928155 None:intergenic
GTTATCTATCCTCTCAGTTA+TGG 0.418269 4_1:+6926889 Msa0532630:exon
AACCAAACAAAAGTTTCCTA+TGG 0.418290 4_1:+6928384 Msa0532630:three_prime_UTR
ATAGTCAAGGTTTAAAATCC+TGG 0.418883 4_1:+6928223 Msa0532630:three_prime_UTR
TGTATTGTGGCAGAGGTGAT+AGG 0.423136 4_1:+6927187 Msa0532630:CDS
TATCATATTGAGAGTGGGAT+TGG 0.433242 4_1:+6928190 Msa0532630:three_prime_UTR
AGGAACAAGAACAAGGGAAC+AGG 0.442127 4_1:+6927906 Msa0532630:CDS
GCGTGGAGTTGAAGAGATAG+TGG 0.472152 4_1:-6926947 None:intergenic
CTTGTAGTGTATTGTGGCAG+AGG 0.475393 4_1:+6927180 Msa0532630:intron
TGCTTTATCATATTGAGAGT+GGG 0.478856 4_1:+6928185 Msa0532630:three_prime_UTR
GATTGGTGAGTGAAGAGATT+GGG 0.488179 4_1:-6926999 None:intergenic
TGATAAGGTTGGTTTGATTG+AGG 0.489390 4_1:-6926858 None:intergenic
GTAGGCAAATACTGCCAATT+CGG 0.492656 4_1:+6928266 Msa0532630:three_prime_UTR
TCTTTCTTGGTAGCATCTGG+TGG 0.499433 4_1:-6927948 None:intergenic
AAAGATGAGAAGAGGAAGCG+TGG 0.518100 4_1:-6926964 None:intergenic
TTGCTTTATCATATTGAGAG+TGG 0.521233 4_1:+6928184 Msa0532630:three_prime_UTR
GGAAAACTGCTAAGGGGAAA+CGG 0.521583 4_1:+6927208 Msa0532630:CDS
AAGAGATTGGGATTGAGAGA+AGG 0.529493 4_1:-6926987 None:intergenic
AAATCAACTAACTAGAAAAG+AGG 0.532100 4_1:-6928016 None:intergenic
TGATTGGTGAGTGAAGAGAT+TGG 0.539355 4_1:-6927000 None:intergenic
TGGAAACACTCTTATAGTCA+AGG 0.551542 4_1:+6928210 Msa0532630:three_prime_UTR
AGGTGATAGGAAAACTGCTA+AGG 0.552164 4_1:+6927200 Msa0532630:CDS
TCTGGTGGAGCATAAATCCT+TGG 0.553001 4_1:-6927933 None:intergenic
ACAAGGTTGAAGAGAGGGTG+GGG 0.553508 4_1:-6927036 None:intergenic
ACCAAACAAAAGTTTCCTAT+GGG 0.556263 4_1:+6928385 Msa0532630:three_prime_UTR
GGGAATGATGAAGTGATGAT+TGG 0.557778 4_1:-6927016 None:intergenic
CTACAACAGCACAAATCCTA+AGG 0.557797 4_1:-6928352 None:intergenic
AGAGAAGGAAAGATGAGAAG+AGG 0.560854 4_1:-6926972 None:intergenic
AATCAACTAACTAGAAAAGA+GGG 0.565948 4_1:-6928015 None:intergenic
GGTGATAGGAAAACTGCTAA+GGG 0.567207 4_1:+6927201 Msa0532630:CDS
ACATTACATTTCCAAACGAA+TGG 0.569487 4_1:-6927236 None:intergenic
AAGGCCAAGGAACAAGAACA+AGG 0.570532 4_1:+6927899 Msa0532630:CDS
AGATAACGAAGACACTGATA+AGG 0.574021 4_1:-6926873 None:intergenic
AACGAAGACACTGATAAGGT+TGG 0.577425 4_1:-6926869 None:intergenic
CGACAAGGTTGAAGAGAGGG+TGG 0.579098 4_1:-6927038 None:intergenic
GGTGGAGCATAAATCCTTGG+TGG 0.582114 4_1:-6927930 None:intergenic
TATCCTCTCAGTTATGGCCA+TGG 0.592654 4_1:+6926895 Msa0532630:exon
GACAAGGTTGAAGAGAGGGT+GGG 0.600630 4_1:-6927037 None:intergenic
GATGTTATCAGGCAAGGCCA+AGG 0.622878 4_1:+6927886 Msa0532630:intron
AAGCGACAAGGTTGAAGAGA+GGG 0.625118 4_1:-6927041 None:intergenic
AGTTGAAGAGATAGTGGTGA+AGG 0.628052 4_1:-6926941 None:intergenic
AGGCCAAGGAACAAGAACAA+GGG 0.651122 4_1:+6927900 Msa0532630:CDS
TAGAAGCAGTGATGATGCCA+TGG 0.657767 4_1:-6926912 None:intergenic
AAAGCGACAAGGTTGAAGAG+AGG 0.661146 4_1:-6927042 None:intergenic
AGGGGTTGGTGAAAGCGACA+AGG 0.666764 4_1:-6927053 None:intergenic
ATGCCATGGCCATAACTGAG+AGG 0.696408 4_1:-6926898 None:intergenic
ACAAGGGAACAGGACCACCA+AGG 0.709490 4_1:+6927916 Msa0532630:CDS
GTGATAGGAAAACTGCTAAG+GGG 0.715035 4_1:+6927202 Msa0532630:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTAATTTTTTCTTTAAAAAA+TGG + chr4_1:6927080-6927099 Msa0532630:intron 10.0%
!!! GTAATTTTTTCTTTAAAAAA+TGG + chr4_1:6927080-6927099 Msa0532630:intron 10.0%
!! ATGATTTATAGTTTGAATTA+TGG + chr4_1:6928070-6928089 Msa0532630:three_prime_UTR 15.0%
!! ATGATTTATAGTTTGAATTA+TGG + chr4_1:6928070-6928089 Msa0532630:three_prime_UTR 15.0%
!! TAAAGAAAAAATTACCAGAA+GGG - chr4_1:6927075-6927094 None:intergenic 20.0%
!! TTAAAGAAAAAATTACCAGA+AGG - chr4_1:6927076-6927095 None:intergenic 20.0%
!!! TGGAATTTTTGTTATGAATT+TGG + chr4_1:6927100-6927119 Msa0532630:intron 20.0%
!!! GATAACCCATTTTTTTATTT+TGG + chr4_1:6927142-6927161 Msa0532630:intron 20.0%
!! ACGAACCAAAATAAAAAAAT+GGG - chr4_1:6927150-6927169 None:intergenic 20.0%
!! AACGAACCAAAATAAAAAAA+TGG - chr4_1:6927151-6927170 None:intergenic 20.0%
!! AATGTACATTAATTCATGTT+TGG + chr4_1:6927394-6927413 Msa0532630:intron 20.0%
!!! ATGATGTATCCTTTTATAAA+AGG + chr4_1:6927467-6927486 Msa0532630:intron 20.0%
!! TTCAAAAGTGGTTATAAAAT+AGG + chr4_1:6927548-6927567 Msa0532630:intron 20.0%
!!! ATCATTATTATTGTTTGTTG+AGG + chr4_1:6927792-6927811 Msa0532630:intron 20.0%
!!! GATTTTTGTTGAAATTTTTG+TGG + chr4_1:6927814-6927833 Msa0532630:intron 20.0%
!! TACAAAATAACATTAGAACT+AGG - chr4_1:6927853-6927872 None:intergenic 20.0%
!!! ATATGTTATTTGATGTTATC+AGG + chr4_1:6927875-6927894 Msa0532630:intron 20.0%
!! ACATAATAGAGACTAAAATA+AGG - chr4_1:6928158-6928177 None:intergenic 20.0%
!! TAAAGAAAAAATTACCAGAA+GGG - chr4_1:6927075-6927094 None:intergenic 20.0%
!! TTAAAGAAAAAATTACCAGA+AGG - chr4_1:6927076-6927095 None:intergenic 20.0%
!!! TGGAATTTTTGTTATGAATT+TGG + chr4_1:6927100-6927119 Msa0532630:intron 20.0%
!!! GATAACCCATTTTTTTATTT+TGG + chr4_1:6927142-6927161 Msa0532630:intron 20.0%
!! ACGAACCAAAATAAAAAAAT+GGG - chr4_1:6927150-6927169 None:intergenic 20.0%
!! AACGAACCAAAATAAAAAAA+TGG - chr4_1:6927151-6927170 None:intergenic 20.0%
!! AATGTACATTAATTCATGTT+TGG + chr4_1:6927394-6927413 Msa0532630:intron 20.0%
!!! ATGATGTATCCTTTTATAAA+AGG + chr4_1:6927467-6927486 Msa0532630:intron 20.0%
!! TTCAAAAGTGGTTATAAAAT+AGG + chr4_1:6927548-6927567 Msa0532630:intron 20.0%
!!! ATCATTATTATTGTTTGTTG+AGG + chr4_1:6927792-6927811 Msa0532630:intron 20.0%
!!! GATTTTTGTTGAAATTTTTG+TGG + chr4_1:6927814-6927833 Msa0532630:intron 20.0%
!! TACAAAATAACATTAGAACT+AGG - chr4_1:6927853-6927872 None:intergenic 20.0%
!!! ATATGTTATTTGATGTTATC+AGG + chr4_1:6927875-6927894 Msa0532630:intron 20.0%
!! ACATAATAGAGACTAAAATA+AGG - chr4_1:6928158-6928177 None:intergenic 20.0%
! AAAGAAAAAATTACCAGAAG+GGG - chr4_1:6927074-6927093 None:intergenic 25.0%
! GAATTTATTGAGTGTATGTT+CGG + chr4_1:6927300-6927319 Msa0532630:intron 25.0%
!!! TGGTAGTTATTTTTCAAAAG+TGG + chr4_1:6927536-6927555 Msa0532630:intron 25.0%
!!! CATGTAGTTTTCTAATTTGT+AGG + chr4_1:6927703-6927722 Msa0532630:intron 25.0%
! CAAAATTCGAGATTATTTCA+TGG + chr4_1:6927755-6927774 Msa0532630:intron 25.0%
! AATCAACTAACTAGAAAAGA+GGG - chr4_1:6928018-6928037 None:intergenic 25.0%
! AAATCAACTAACTAGAAAAG+AGG - chr4_1:6928019-6928038 None:intergenic 25.0%
! TCCATTTGCAATATACTATT+TGG + chr4_1:6928095-6928114 Msa0532630:three_prime_UTR 25.0%
! TCCAAATAGTATATTGCAAA+TGG - chr4_1:6928099-6928118 None:intergenic 25.0%
! ACAGTTTGAGAAAAAATTGT+AGG + chr4_1:6928248-6928267 Msa0532630:three_prime_UTR 25.0%
! AAAGAAAAAATTACCAGAAG+GGG - chr4_1:6927074-6927093 None:intergenic 25.0%
! GAATTTATTGAGTGTATGTT+CGG + chr4_1:6927300-6927319 Msa0532630:intron 25.0%
!!! TGGTAGTTATTTTTCAAAAG+TGG + chr4_1:6927536-6927555 Msa0532630:intron 25.0%
!!! CATGTAGTTTTCTAATTTGT+AGG + chr4_1:6927703-6927722 Msa0532630:intron 25.0%
! CAAAATTCGAGATTATTTCA+TGG + chr4_1:6927755-6927774 Msa0532630:intron 25.0%
! AATCAACTAACTAGAAAAGA+GGG - chr4_1:6928018-6928037 None:intergenic 25.0%
! AAATCAACTAACTAGAAAAG+AGG - chr4_1:6928019-6928038 None:intergenic 25.0%
! TCCATTTGCAATATACTATT+TGG + chr4_1:6928095-6928114 Msa0532630:three_prime_UTR 25.0%
! TCCAAATAGTATATTGCAAA+TGG - chr4_1:6928099-6928118 None:intergenic 25.0%
! ACAGTTTGAGAAAAAATTGT+AGG + chr4_1:6928248-6928267 Msa0532630:three_prime_UTR 25.0%
! TGTTTTCTTGTAGTGTATTG+TGG + chr4_1:6927174-6927193 Msa0532630:intron 30.0%
ACATTACATTTCCAAACGAA+TGG - chr4_1:6927239-6927258 None:intergenic 30.0%
! GATGCGTATCCTTTTATAAA+AGG - chr4_1:6927479-6927498 None:intergenic 30.0%
GGTTATAAAATAGGCTTACA+TGG + chr4_1:6927557-6927576 Msa0532630:intron 30.0%
ATCCATTTAACTCATGTTTC+TGG + chr4_1:6927636-6927655 Msa0532630:intron 30.0%
!!! TGATTTTTTAGTCCATGAAG+AGG + chr4_1:6927671-6927690 Msa0532630:intron 30.0%
!!! GATTTTTTAGTCCATGAAGA+GGG + chr4_1:6927672-6927691 Msa0532630:intron 30.0%
TTATTTGATGTTATCAGGCA+AGG + chr4_1:6927880-6927899 Msa0532630:intron 30.0%
TTGCAAAGTGAACTCAAATA+AGG - chr4_1:6928135-6928154 None:intergenic 30.0%
TTGCTTTATCATATTGAGAG+TGG + chr4_1:6928184-6928203 Msa0532630:three_prime_UTR 30.0%
TGCTTTATCATATTGAGAGT+GGG + chr4_1:6928185-6928204 Msa0532630:three_prime_UTR 30.0%
! ATAGTCAAGGTTTAAAATCC+TGG + chr4_1:6928223-6928242 Msa0532630:three_prime_UTR 30.0%
AACCAAACAAAAGTTTCCTA+TGG + chr4_1:6928384-6928403 Msa0532630:three_prime_UTR 30.0%
ACCAAACAAAAGTTTCCTAT+GGG + chr4_1:6928385-6928404 Msa0532630:three_prime_UTR 30.0%
! TGTTTTCTTGTAGTGTATTG+TGG + chr4_1:6927174-6927193 Msa0532630:intron 30.0%
ACATTACATTTCCAAACGAA+TGG - chr4_1:6927239-6927258 None:intergenic 30.0%
! GATGCGTATCCTTTTATAAA+AGG - chr4_1:6927479-6927498 None:intergenic 30.0%
GGTTATAAAATAGGCTTACA+TGG + chr4_1:6927557-6927576 Msa0532630:intron 30.0%
ATCCATTTAACTCATGTTTC+TGG + chr4_1:6927636-6927655 Msa0532630:intron 30.0%
!!! TGATTTTTTAGTCCATGAAG+AGG + chr4_1:6927671-6927690 Msa0532630:intron 30.0%
!!! GATTTTTTAGTCCATGAAGA+GGG + chr4_1:6927672-6927691 Msa0532630:intron 30.0%
TTATTTGATGTTATCAGGCA+AGG + chr4_1:6927880-6927899 Msa0532630:intron 30.0%
TTGCAAAGTGAACTCAAATA+AGG - chr4_1:6928135-6928154 None:intergenic 30.0%
TTGCTTTATCATATTGAGAG+TGG + chr4_1:6928184-6928203 Msa0532630:three_prime_UTR 30.0%
TGCTTTATCATATTGAGAGT+GGG + chr4_1:6928185-6928204 Msa0532630:three_prime_UTR 30.0%
! ATAGTCAAGGTTTAAAATCC+TGG + chr4_1:6928223-6928242 Msa0532630:three_prime_UTR 30.0%
AACCAAACAAAAGTTTCCTA+TGG + chr4_1:6928384-6928403 Msa0532630:three_prime_UTR 30.0%
ACCAAACAAAAGTTTCCTAT+GGG + chr4_1:6928385-6928404 Msa0532630:three_prime_UTR 30.0%
!! TGATAAGGTTGGTTTGATTG+AGG - chr4_1:6926861-6926880 None:intergenic 35.0%
AGATAACGAAGACACTGATA+AGG - chr4_1:6926876-6926895 None:intergenic 35.0%
GTTATCTATCCTCTCAGTTA+TGG + chr4_1:6926889-6926908 Msa0532630:exon 35.0%
AAAAAATTACCAGAAGGGGT+TGG - chr4_1:6927070-6927089 None:intergenic 35.0%
TATTGAGTGTATGTTCGGTT+AGG + chr4_1:6927305-6927324 Msa0532630:intron 35.0%
GACCAGAAACATGAGTTAAA+TGG - chr4_1:6927641-6927660 None:intergenic 35.0%
!!! ATGTTTTTAGTCCCTCTTCA+TGG - chr4_1:6927686-6927705 None:intergenic 35.0%
ATCTTCAAGCTTCTCTTTCT+TGG - chr4_1:6927964-6927983 None:intergenic 35.0%
GAAAGAGAAGCTTGAAGATA+AGG + chr4_1:6927965-6927984 Msa0532630:CDS 35.0%
TATCATATTGAGAGTGGGAT+TGG + chr4_1:6928190-6928209 Msa0532630:three_prime_UTR 35.0%
TGGAAACACTCTTATAGTCA+AGG + chr4_1:6928210-6928229 Msa0532630:three_prime_UTR 35.0%
!!! TTTTTTCTCAAACTGTGACC+AGG - chr4_1:6928244-6928263 None:intergenic 35.0%
GACAAAAATTGTGACCGAAT+TGG - chr4_1:6928283-6928302 None:intergenic 35.0%
! TCACAATTTTTGTCGCTATG+TGG + chr4_1:6928289-6928308 Msa0532630:three_prime_UTR 35.0%
! AATTTTTGTCGCTATGTGGT+TGG + chr4_1:6928293-6928312 Msa0532630:three_prime_UTR 35.0%
! ATTTTTGTCGCTATGTGGTT+GGG + chr4_1:6928294-6928313 Msa0532630:three_prime_UTR 35.0%
! TCTCATGGATTTTTCTCCTT+AGG + chr4_1:6928336-6928355 Msa0532630:three_prime_UTR 35.0%
! TCCCATAGGAAACTTTTGTT+TGG - chr4_1:6928389-6928408 None:intergenic 35.0%
TCCTATGGGAAAAACTGATT+TGG + chr4_1:6928399-6928418 Msa0532630:three_prime_UTR 35.0%
! CCTATGGGAAAAACTGATTT+GGG + chr4_1:6928400-6928419 Msa0532630:three_prime_UTR 35.0%
!! TGATAAGGTTGGTTTGATTG+AGG - chr4_1:6926861-6926880 None:intergenic 35.0%
AGATAACGAAGACACTGATA+AGG - chr4_1:6926876-6926895 None:intergenic 35.0%
GTTATCTATCCTCTCAGTTA+TGG + chr4_1:6926889-6926908 Msa0532630:exon 35.0%
AAAAAATTACCAGAAGGGGT+TGG - chr4_1:6927070-6927089 None:intergenic 35.0%
TATTGAGTGTATGTTCGGTT+AGG + chr4_1:6927305-6927324 Msa0532630:intron 35.0%
GACCAGAAACATGAGTTAAA+TGG - chr4_1:6927641-6927660 None:intergenic 35.0%
!!! ATGTTTTTAGTCCCTCTTCA+TGG - chr4_1:6927686-6927705 None:intergenic 35.0%
ATCTTCAAGCTTCTCTTTCT+TGG - chr4_1:6927964-6927983 None:intergenic 35.0%
GAAAGAGAAGCTTGAAGATA+AGG + chr4_1:6927965-6927984 Msa0532630:CDS 35.0%
TATCATATTGAGAGTGGGAT+TGG + chr4_1:6928190-6928209 Msa0532630:three_prime_UTR 35.0%
TGGAAACACTCTTATAGTCA+AGG + chr4_1:6928210-6928229 Msa0532630:three_prime_UTR 35.0%
!!! TTTTTTCTCAAACTGTGACC+AGG - chr4_1:6928244-6928263 None:intergenic 35.0%
GACAAAAATTGTGACCGAAT+TGG - chr4_1:6928283-6928302 None:intergenic 35.0%
! TCACAATTTTTGTCGCTATG+TGG + chr4_1:6928289-6928308 Msa0532630:three_prime_UTR 35.0%
! AATTTTTGTCGCTATGTGGT+TGG + chr4_1:6928293-6928312 Msa0532630:three_prime_UTR 35.0%
! ATTTTTGTCGCTATGTGGTT+GGG + chr4_1:6928294-6928313 Msa0532630:three_prime_UTR 35.0%
! TCTCATGGATTTTTCTCCTT+AGG + chr4_1:6928336-6928355 Msa0532630:three_prime_UTR 35.0%
! TCCCATAGGAAACTTTTGTT+TGG - chr4_1:6928389-6928408 None:intergenic 35.0%
TCCTATGGGAAAAACTGATT+TGG + chr4_1:6928399-6928418 Msa0532630:three_prime_UTR 35.0%
! CCTATGGGAAAAACTGATTT+GGG + chr4_1:6928400-6928419 Msa0532630:three_prime_UTR 35.0%
AACGAAGACACTGATAAGGT+TGG - chr4_1:6926872-6926891 None:intergenic 40.0%
! AGTTGAAGAGATAGTGGTGA+AGG - chr4_1:6926944-6926963 None:intergenic 40.0%
AGAGAAGGAAAGATGAGAAG+AGG - chr4_1:6926975-6926994 None:intergenic 40.0%
AAGAGATTGGGATTGAGAGA+AGG - chr4_1:6926990-6927009 None:intergenic 40.0%
GATTGGTGAGTGAAGAGATT+GGG - chr4_1:6927002-6927021 None:intergenic 40.0%
TGATTGGTGAGTGAAGAGAT+TGG - chr4_1:6927003-6927022 None:intergenic 40.0%
GGGAATGATGAAGTGATGAT+TGG - chr4_1:6927019-6927038 None:intergenic 40.0%
AGGTGATAGGAAAACTGCTA+AGG + chr4_1:6927200-6927219 Msa0532630:CDS 40.0%
GGTGATAGGAAAACTGCTAA+GGG + chr4_1:6927201-6927220 Msa0532630:CDS 40.0%
GTGATAGGAAAACTGCTAAG+GGG + chr4_1:6927202-6927221 Msa0532630:CDS 40.0%
! TTACACCTGCATGAAGCATT+TGG + chr4_1:6927516-6927535 Msa0532630:intron 40.0%
AACTACCAAATGCTTCATGC+AGG - chr4_1:6927524-6927543 None:intergenic 40.0%
! TTCTCTTTCTTGGTAGCATC+TGG - chr4_1:6927954-6927973 None:intergenic 40.0%
GTAGGCAAATACTGCCAATT+CGG + chr4_1:6928266-6928285 Msa0532630:three_prime_UTR 40.0%
! TTTTTGTCGCTATGTGGTTG+GGG + chr4_1:6928295-6928314 Msa0532630:three_prime_UTR 40.0%
CATCAAAAACCTCGATCTCA+TGG + chr4_1:6928321-6928340 Msa0532630:three_prime_UTR 40.0%
GAGAAAAATCCATGAGATCG+AGG - chr4_1:6928333-6928352 None:intergenic 40.0%
CTACAACAGCACAAATCCTA+AGG - chr4_1:6928355-6928374 None:intergenic 40.0%
! CCCAAATCAGTTTTTCCCAT+AGG - chr4_1:6928403-6928422 None:intergenic 40.0%
AACGAAGACACTGATAAGGT+TGG - chr4_1:6926872-6926891 None:intergenic 40.0%
! AGTTGAAGAGATAGTGGTGA+AGG - chr4_1:6926944-6926963 None:intergenic 40.0%
AGAGAAGGAAAGATGAGAAG+AGG - chr4_1:6926975-6926994 None:intergenic 40.0%
AAGAGATTGGGATTGAGAGA+AGG - chr4_1:6926990-6927009 None:intergenic 40.0%
GATTGGTGAGTGAAGAGATT+GGG - chr4_1:6927002-6927021 None:intergenic 40.0%
TGATTGGTGAGTGAAGAGAT+TGG - chr4_1:6927003-6927022 None:intergenic 40.0%
GGGAATGATGAAGTGATGAT+TGG - chr4_1:6927019-6927038 None:intergenic 40.0%
AGGTGATAGGAAAACTGCTA+AGG + chr4_1:6927200-6927219 Msa0532630:CDS 40.0%
GGTGATAGGAAAACTGCTAA+GGG + chr4_1:6927201-6927220 Msa0532630:CDS 40.0%
GTGATAGGAAAACTGCTAAG+GGG + chr4_1:6927202-6927221 Msa0532630:CDS 40.0%
! TTACACCTGCATGAAGCATT+TGG + chr4_1:6927516-6927535 Msa0532630:intron 40.0%
AACTACCAAATGCTTCATGC+AGG - chr4_1:6927524-6927543 None:intergenic 40.0%
! TTCTCTTTCTTGGTAGCATC+TGG - chr4_1:6927954-6927973 None:intergenic 40.0%
GTAGGCAAATACTGCCAATT+CGG + chr4_1:6928266-6928285 Msa0532630:three_prime_UTR 40.0%
! TTTTTGTCGCTATGTGGTTG+GGG + chr4_1:6928295-6928314 Msa0532630:three_prime_UTR 40.0%
CATCAAAAACCTCGATCTCA+TGG + chr4_1:6928321-6928340 Msa0532630:three_prime_UTR 40.0%
GAGAAAAATCCATGAGATCG+AGG - chr4_1:6928333-6928352 None:intergenic 40.0%
CTACAACAGCACAAATCCTA+AGG - chr4_1:6928355-6928374 None:intergenic 40.0%
! CCCAAATCAGTTTTTCCCAT+AGG - chr4_1:6928403-6928422 None:intergenic 40.0%
TATCCTCTCAGTTATGGCCA+TGG + chr4_1:6926895-6926914 Msa0532630:exon 45.0%
! TAGAAGCAGTGATGATGCCA+TGG - chr4_1:6926915-6926934 None:intergenic 45.0%
AAAGATGAGAAGAGGAAGCG+TGG - chr4_1:6926967-6926986 None:intergenic 45.0%
AAGCGACAAGGTTGAAGAGA+GGG - chr4_1:6927044-6927063 None:intergenic 45.0%
AAAGCGACAAGGTTGAAGAG+AGG - chr4_1:6927045-6927064 None:intergenic 45.0%
CTTGTAGTGTATTGTGGCAG+AGG + chr4_1:6927180-6927199 Msa0532630:intron 45.0%
TGTATTGTGGCAGAGGTGAT+AGG + chr4_1:6927187-6927206 Msa0532630:CDS 45.0%
GGAAAACTGCTAAGGGGAAA+CGG + chr4_1:6927208-6927227 Msa0532630:CDS 45.0%
AAACGGTTCAGCCATTCGTT+TGG + chr4_1:6927225-6927244 Msa0532630:CDS 45.0%
AAGGCCAAGGAACAAGAACA+AGG + chr4_1:6927899-6927918 Msa0532630:CDS 45.0%
AGGCCAAGGAACAAGAACAA+GGG + chr4_1:6927900-6927919 Msa0532630:CDS 45.0%
GTTCCCTTGTTCTTGTTCCT+TGG - chr4_1:6927906-6927925 None:intergenic 45.0%
AGGAACAAGAACAAGGGAAC+AGG + chr4_1:6927906-6927925 Msa0532630:CDS 45.0%
TCTGGTGGAGCATAAATCCT+TGG - chr4_1:6927936-6927955 None:intergenic 45.0%
! TCTTTCTTGGTAGCATCTGG+TGG - chr4_1:6927951-6927970 None:intergenic 45.0%
TATCCTCTCAGTTATGGCCA+TGG + chr4_1:6926895-6926914 Msa0532630:exon 45.0%
! TAGAAGCAGTGATGATGCCA+TGG - chr4_1:6926915-6926934 None:intergenic 45.0%
AAAGATGAGAAGAGGAAGCG+TGG - chr4_1:6926967-6926986 None:intergenic 45.0%
AAGCGACAAGGTTGAAGAGA+GGG - chr4_1:6927044-6927063 None:intergenic 45.0%
AAAGCGACAAGGTTGAAGAG+AGG - chr4_1:6927045-6927064 None:intergenic 45.0%
CTTGTAGTGTATTGTGGCAG+AGG + chr4_1:6927180-6927199 Msa0532630:intron 45.0%
TGTATTGTGGCAGAGGTGAT+AGG + chr4_1:6927187-6927206 Msa0532630:CDS 45.0%
GGAAAACTGCTAAGGGGAAA+CGG + chr4_1:6927208-6927227 Msa0532630:CDS 45.0%
AAACGGTTCAGCCATTCGTT+TGG + chr4_1:6927225-6927244 Msa0532630:CDS 45.0%
AAGGCCAAGGAACAAGAACA+AGG + chr4_1:6927899-6927918 Msa0532630:CDS 45.0%
AGGCCAAGGAACAAGAACAA+GGG + chr4_1:6927900-6927919 Msa0532630:CDS 45.0%
GTTCCCTTGTTCTTGTTCCT+TGG - chr4_1:6927906-6927925 None:intergenic 45.0%
AGGAACAAGAACAAGGGAAC+AGG + chr4_1:6927906-6927925 Msa0532630:CDS 45.0%
TCTGGTGGAGCATAAATCCT+TGG - chr4_1:6927936-6927955 None:intergenic 45.0%
! TCTTTCTTGGTAGCATCTGG+TGG - chr4_1:6927951-6927970 None:intergenic 45.0%
ATGCCATGGCCATAACTGAG+AGG - chr4_1:6926901-6926920 None:intergenic 50.0%
GCGTGGAGTTGAAGAGATAG+TGG - chr4_1:6926950-6926969 None:intergenic 50.0%
ACAAGGTTGAAGAGAGGGTG+GGG - chr4_1:6927039-6927058 None:intergenic 50.0%
GACAAGGTTGAAGAGAGGGT+GGG - chr4_1:6927040-6927059 None:intergenic 50.0%
GATGTTATCAGGCAAGGCCA+AGG + chr4_1:6927886-6927905 Msa0532630:intron 50.0%
GGTGGAGCATAAATCCTTGG+TGG - chr4_1:6927933-6927952 None:intergenic 50.0%
ATGCCATGGCCATAACTGAG+AGG - chr4_1:6926901-6926920 None:intergenic 50.0%
GCGTGGAGTTGAAGAGATAG+TGG - chr4_1:6926950-6926969 None:intergenic 50.0%
ACAAGGTTGAAGAGAGGGTG+GGG - chr4_1:6927039-6927058 None:intergenic 50.0%
GACAAGGTTGAAGAGAGGGT+GGG - chr4_1:6927040-6927059 None:intergenic 50.0%
GATGTTATCAGGCAAGGCCA+AGG + chr4_1:6927886-6927905 Msa0532630:intron 50.0%
GGTGGAGCATAAATCCTTGG+TGG - chr4_1:6927933-6927952 None:intergenic 50.0%
CGACAAGGTTGAAGAGAGGG+TGG - chr4_1:6927041-6927060 None:intergenic 55.0%
!! AGGGGTTGGTGAAAGCGACA+AGG - chr4_1:6927056-6927075 None:intergenic 55.0%
TCGCTTTCACCAACCCCTTC+TGG + chr4_1:6927058-6927077 Msa0532630:CDS 55.0%
ACAAGGGAACAGGACCACCA+AGG + chr4_1:6927916-6927935 Msa0532630:CDS 55.0%
CGACAAGGTTGAAGAGAGGG+TGG - chr4_1:6927041-6927060 None:intergenic 55.0%
!! AGGGGTTGGTGAAAGCGACA+AGG - chr4_1:6927056-6927075 None:intergenic 55.0%
TCGCTTTCACCAACCCCTTC+TGG + chr4_1:6927058-6927077 Msa0532630:CDS 55.0%
ACAAGGGAACAGGACCACCA+AGG + chr4_1:6927916-6927935 Msa0532630:CDS 55.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 6926858 6928428 6926858 ID=Msa0532630;Name=Msa0532630
chr4_1 mRNA 6926858 6928428 6926858 ID=Msa0532630-mRNA-1;Parent=Msa0532630;Name=Msa0532630-mRNA-1;_AED=0.00;_eAED=0.00;_QI=50|1|1|1|1|1|3|397|123
chr4_1 exon 6926858 6927079 6926858 ID=Msa0532630-mRNA-1:exon:2427;Parent=Msa0532630-mRNA-1
chr4_1 exon 6927187 6927251 6927187 ID=Msa0532630-mRNA-1:exon:2428;Parent=Msa0532630-mRNA-1
chr4_1 exon 6927897 6928428 6927897 ID=Msa0532630-mRNA-1:exon:2429;Parent=Msa0532630-mRNA-1
chr4_1 five_prime_UTR 6926858 6926907 6926858 ID=Msa0532630-mRNA-1:five_prime_utr;Parent=Msa0532630-mRNA-1
chr4_1 CDS 6926908 6927079 6926908 ID=Msa0532630-mRNA-1:cds;Parent=Msa0532630-mRNA-1
chr4_1 CDS 6927187 6927251 6927187 ID=Msa0532630-mRNA-1:cds;Parent=Msa0532630-mRNA-1
chr4_1 CDS 6927897 6928031 6927897 ID=Msa0532630-mRNA-1:cds;Parent=Msa0532630-mRNA-1
chr4_1 three_prime_UTR 6928032 6928428 6928032 ID=Msa0532630-mRNA-1:three_prime_utr;Parent=Msa0532630-mRNA-1
Gene Sequence

>Msa0532630

ATGGCCATGGCATCATCACTGCTTCTAGCATCACCTTCACCACTATCTCTTCAACTCCACGCTTCCTCTTCTCATCTTTCCTTCTCTCAATCCCAATCTCTTCACTCACCAATCATCACTTCATCATTCCCCACCCTCTCTTCAACCTTGTCGCTTTCACCAACCCCTTCTGTGTATTGTGGCAGAGGTGATAGGAAAACTGCTAAGGGGAAACGGTTCAGCCATTCGTTTGGAAATGCAAGGCCAAGGAACAAGAACAAGGGAACAGGACCACCAAGGATTTATGCTCCACCAGATGCTACCAAGAAAGAGAAGCTTGAAGATAAGGAAGTGATTAAGATTGAAATTAACGAATCCCTCTTTTCTAGTTAG

Protein sequence

>Msa0532630

MAMASSLLLASPSPLSLQLHASSSHLSFSQSQSLHSPIITSSFPTLSSTLSLSPTPSVYCGRGDRKTAKGKRFSHSFGNARPRNKNKGTGPPRIYAPPDATKKEKLEDKEVIKIEINESLFSS*