AlfalfaGEDB | Msa0669330

M. sativa cultivar zhongmu-4 / Msa0669330

KEGG: -
GO: -
PFAM: PF05056.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017510	Msa0669330	0.805502	1.294474e-49	-8.615850e-47
Msa0157290	Msa0669330	0.805897	1.069124e-49	-8.615850e-47
Msa0669320	Msa0669330	0.865083	7.636405e-65	-8.615850e-47
Msa0669330	Msa1186060	0.810079	1.377543e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0669330	MtrunA17_Chr4g0008511	70.732	41	10	2	53	91	112	152	2.59e-12	60.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 22 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTGCAGTGGTGCTGTT+CGG	0.499042	4_4:-10991912	Msa0669330:CDS
AAAGCTGCAGTAGGAGTGAT+TGG	0.535807	4_4:-10991010	Msa0669330:CDS
AAATGTTAACTGTTGATGGC+TGG	0.512332	4_4:-10991948	Msa0669330:CDS
AATGTTAACTGTTGATGGCT+GGG	0.545018	4_4:-10991947	Msa0669330:CDS
ACCAGCTATGGATACGGACA+CGG	0.627014	4_4:+10991867	None:intergenic
ACTGGACAGTCTTCTCTTCA+TGG	0.430946	4_4:-10991844	Msa0669330:CDS
AGACTGTCCAGTACCAGCTA+TGG	0.570410	4_4:+10991855	None:intergenic
CAATAAATTGAAGTTCAAGT+TGG	0.453085	4_4:-10991066	Msa0669330:intron
CACAAAATGTTAACTGTTGA+TGG	0.348525	4_4:-10991952	None:intergenic
CTAGTTAGAGAAACTTGCAG+TGG	0.691121	4_4:-10991922	Msa0669330:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCGACATATTCATGATTATT+GGG	-	chr4_4:10991391-10991410	Msa0669330:intron	30.0%
TTATGCTGTTGATCTTAAGT+CGG	-	chr4_4:10991457-10991476	Msa0669330:intron	30.0%
GTCCTTCAAATTATTTCCAA+TGG	+	chr4_4:10991598-10991617	None:intergenic	30.0%
TTACATCTTTAACTCCCTTT+AGG	+	chr4_4:10991620-10991639	None:intergenic	30.0%
GAACTGTTTGAACTGAAAAT+TGG	-	chr4_4:10991723-10991742	Msa0669330:intron	30.0%
GCGACATATTCATGATTATT+GGG	-	chr4_4:10991391-10991410	Msa0669330:intron	30.0%
TTATGCTGTTGATCTTAAGT+CGG	-	chr4_4:10991457-10991476	Msa0669330:intron	30.0%
GTCCTTCAAATTATTTCCAA+TGG	+	chr4_4:10991598-10991617	None:intergenic	30.0%
TTACATCTTTAACTCCCTTT+AGG	+	chr4_4:10991620-10991639	None:intergenic	30.0%
GAACTGTTTGAACTGAAAAT+TGG	-	chr4_4:10991723-10991742	Msa0669330:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	10990956	10991968	10990956	ID=Msa0669330;Name=Msa0669330
chr4_4	mRNA	10990956	10991968	10990956	ID=Msa0669330-mRNA-1;Parent=Msa0669330;Name=Msa0669330-mRNA-1;_AED=0.77;_eAED=0.77;_QI=0\|0\|0\|0.5\|0\|0.5\|2\|0\|91
chr4_4	exon	10991813	10991968	10991813	ID=Msa0669330-mRNA-1:exon:3332;Parent=Msa0669330-mRNA-1
chr4_4	exon	10990956	10991075	10990956	ID=Msa0669330-mRNA-1:exon:3331;Parent=Msa0669330-mRNA-1
chr4_4	CDS	10991813	10991968	10991813	ID=Msa0669330-mRNA-1:cds;Parent=Msa0669330-mRNA-1
chr4_4	CDS	10990956	10991075	10990956	ID=Msa0669330-mRNA-1:cds;Parent=Msa0669330-mRNA-1

Gene Sequence	>Msa0669330 ATGTTAACTGTTGATGGCTGGGATCTAGTTAGAGAAACTTGCAGTGGTGCTGTTCGGAACAAAGTTTGCAAACTACCTTCCGTGTCCGTATCCATAGCTGGTACTGGACAGTCTTCTCTTCATGGCCATACCCAAGATCTCTTTCAAGATGACAATTTCAAGTTGGACGATTCAGAGCTCATGAGGTACTTCATGTGTGAAAGCTGCAGTAGGAGTGATTGGTGTTTGAGTACTTTTGTCGGTATTAGTTGTTCTTGTGGGAAATTGATGGACTGA
Protein sequence	>Msa0669330 MLTVDGWDLVRETCSGAVRNKVCKLPSVSVSIAGTGQSSLHGHTQDLFQDDNFKLDDSELMRYFMCESCSRSDWCLSTFVGISCSCGKLMD*