Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1371860 | XP_024636225.1 | 86.614 | 254 | 34 | 0 | 1 | 254 | 1 | 254 | 1.19e-159 | 453 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1371860 | sp|Q9FHE4|BRG1_ARATH | 27.717 | 184 | 109 | 6 | 76 | 240 | 104 | 282 | 2.04e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1371860 | A0A396I2E1 | 86.614 | 254 | 34 | 0 | 1 | 254 | 1 | 254 | 5.70e-160 | 453 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0674670 | Msa1371860 | 0.802789 | 4.749368e-49 | -8.615850e-47 |
| Msa0766630 | Msa1371860 | 0.808391 | 3.170058e-50 | -8.615850e-47 |
| Msa0907260 | Msa1371860 | 0.804661 | 1.941206e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1371860 | MtrunA17_Chr4g0017931 | 86.614 | 254 | 34 | 0 | 1 | 254 | 1 | 254 | 1.10e-163 | 453 |
| Msa1371860 | MtrunA17_Chr4g0017891 | 72.047 | 254 | 71 | 0 | 1 | 254 | 1 | 254 | 3.06e-122 | 348 |
| Msa1371860 | MtrunA17_Chr2g0311321 | 80.000 | 220 | 44 | 0 | 1 | 220 | 1 | 220 | 4.44e-111 | 319 |
| Msa1371860 | MtrunA17_Chr4g0036941 | 55.985 | 259 | 101 | 3 | 1 | 252 | 3 | 255 | 4.18e-88 | 261 |
| Msa1371860 | MtrunA17_Chr2g0319361 | 53.462 | 260 | 107 | 2 | 1 | 252 | 1 | 254 | 2.19e-80 | 242 |
| Msa1371860 | MtrunA17_Chr4g0050301 | 59.459 | 148 | 59 | 1 | 105 | 252 | 14 | 160 | 4.42e-56 | 177 |
| Msa1371860 | MtrunA17_Chr3g0145641 | 36.628 | 172 | 94 | 4 | 80 | 247 | 19 | 179 | 8.27e-30 | 110 |
| Msa1371860 | MtrunA17_Chr4g0018631 | 32.000 | 200 | 121 | 5 | 59 | 247 | 13 | 208 | 6.27e-27 | 103 |
| Msa1371860 | MtrunA17_Chr2g0291661 | 24.607 | 191 | 122 | 4 | 78 | 248 | 128 | 316 | 6.76e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1371860 | AT4G35070.1 | 35.567 | 194 | 101 | 6 | 78 | 253 | 78 | 265 | 1.54e-25 | 101 |
| Msa1371860 | AT4G35070.2 | 35.052 | 194 | 102 | 6 | 78 | 253 | 23 | 210 | 3.22e-25 | 99.4 |
| Msa1371860 | AT5G45100.2 | 27.717 | 184 | 109 | 6 | 76 | 240 | 77 | 255 | 1.47e-12 | 66.2 |
| Msa1371860 | AT5G45100.1 | 27.717 | 184 | 109 | 6 | 76 | 240 | 104 | 282 | 2.08e-12 | 66.2 |
| Msa1371860 | AT1G45976.1 | 24.865 | 185 | 127 | 4 | 66 | 238 | 129 | 313 | 5.85e-11 | 62.0 |
Find 42 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATAACTTCGCATAACAATT+TGG | 0.247198 | tig0019252:-2224 | Msa1371860:CDS |
| AGAATTTGAGAAAATACTTA+AGG | 0.382664 | tig0019252:-2263 | Msa1371860:CDS |
| TGAAACTTGGACATGAGAAT+TGG | 0.392838 | tig0019252:+2896 | Msa1371860:intergenic |
| TGTGGTTGTTGTAGTTCAAT+AGG | 0.393104 | tig0019252:+2972 | Msa1371860:intergenic |
| GGTAATCATGGATTTCCTTT+CGG | 0.398155 | tig0019252:-3053 | Msa1371860:CDS |
| GGATTTCCTTTCGGCATCAA+TGG | 0.413294 | tig0019252:-3044 | Msa1371860:CDS |
| AAATCAGTTCATCAATAATC+AGG | 0.419669 | tig0019252:-2817 | Msa1371860:intron |
| CTCGAAGTTTGTCCAATATG+TGG | 0.419892 | tig0019252:-2001 | Msa1371860:CDS |
| AACTTAAGATGCTTGAAACT+TGG | 0.421911 | tig0019252:+2883 | Msa1371860:intergenic |
| TGAGAAAATACTTAAGGAAA+GGG | 0.442489 | tig0019252:-2257 | Msa1371860:CDS |
| AAGAGGAGAAGAAGAAACTA+AGG | 0.448495 | tig0019252:-2201 | Msa1371860:CDS |
| TATTATGTCGGTGGAATCGC+AGG | 0.448522 | tig0019252:-3020 | Msa1371860:CDS |
| CCACACTCTCATGGTAATCA+TGG | 0.454463 | tig0019252:-3065 | Msa1371860:CDS |
| ACAAAATCAACAACAGTGGC+AGG | 0.458608 | tig0019252:-2937 | Msa1371860:CDS |
| TGTTGTAGTTCAATAGGTTG+TGG | 0.475374 | tig0019252:+2978 | Msa1371860:intergenic |
| GGCATCAATGGTTATTATGT+CGG | 0.476149 | tig0019252:-3032 | Msa1371860:CDS |
| TGCAAAGAAAACACATGAGT+TGG | 0.476231 | tig0019252:-2320 | Msa1371860:CDS |
| TTGGACATGAGAATTGGAAA+AGG | 0.476885 | tig0019252:+2902 | Msa1371860:intergenic |
| GCTTACTTCTTCGCTTTCAC+CGG | 0.495216 | tig0019252:+2147 | Msa1371860:intergenic |
| TTGAGAAAATACTTAAGGAA+AGG | 0.501347 | tig0019252:-2258 | Msa1371860:CDS |
| CACGAAGAAAGATGCCTACA+TGG | 0.502607 | tig0019252:+2043 | Msa1371860:intergenic |
| GTGTCTTATTTATGCCATGT+AGG | 0.509532 | tig0019252:-2057 | Msa1371860:CDS |
| TGCTACTACAACAACATCAA+AGG | 0.512848 | tig0019252:-2402 | Msa1371860:CDS |
| TTTCTCAAATAGAGAATCAA+AGG | 0.518811 | tig0019252:+2854 | Msa1371860:intergenic |
| GCTACTACAACAACATCAAA+GGG | 0.526600 | tig0019252:-2401 | Msa1371860:CDS |
| AAATCTCGTAAGAAGATTTG+AGG | 0.530617 | tig0019252:-2296 | Msa1371860:CDS |
| TTCGCATAACAATTTGGAAG+AGG | 0.532491 | tig0019252:-2218 | Msa1371860:CDS |
| TGGACATGAGAATTGGAAAA+GGG | 0.534112 | tig0019252:+2903 | Msa1371860:intergenic |
| ACAAATGATGACAATAAAGA+AGG | 0.554754 | tig0019252:-2359 | Msa1371860:CDS |
| AAGTGTAACACAAAATCCTC+AGG | 0.567006 | tig0019252:-2079 | Msa1371860:CDS |
| AATGATGCAAAATCATGTAC+CGG | 0.571497 | tig0019252:-2166 | Msa1371860:CDS |
| ATCATGCAACCACACTCTCA+TGG | 0.584855 | tig0019252:-3074 | Msa1371860:CDS |
| TCAAATAGAGAATCAAAGGT+AGG | 0.589676 | tig0019252:+2858 | Msa1371860:intergenic |
| TCTATTTGAGAAACAAGTCA+AGG | 0.602819 | tig0019252:-2844 | Msa1371860:CDS |
| TAATAACCATTGATGCCGAA+AGG | 0.608678 | tig0019252:+3038 | Msa1371860:intergenic |
| ATCAATGGTTATTATGTCGG+TGG | 0.625897 | tig0019252:-3029 | Msa1371860:CDS |
| CAAAATCAACAACAGTGGCA+GGG | 0.642850 | tig0019252:-2936 | Msa1371860:CDS |
| ATTATGTCGGTGGAATCGCA+GGG | 0.686770 | tig0019252:-3019 | Msa1371860:CDS |
| AATTGGAAAAGGGAACAACA+TGG | 0.691856 | tig0019252:+2913 | Msa1371860:intergenic |
| CCATGATTACCATGAGAGTG+TGG | 0.696444 | tig0019252:+3065 | Msa1371860:intergenic |
| AACCACAAAATCAACAACAG+TGG | 0.702825 | tig0019252:-2941 | Msa1371860:CDS |
| TGGCATAAATAAGACACCTG+AGG | 0.722061 | tig0019252:+2063 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAGAAAAGATTCCTTTTTT+AGG | - | tig0019252:2324-2343 | Msa1371860:CDS | 20.0% |
| !! | TTATTCAATGAACCTAAAAA+AGG | + | tig0019252:2339-2358 | Msa1371860:intergenic | 20.0% |
| !! | CTACTCAATTAATCTAAAAA+AGG | - | tig0019252:2398-2417 | Msa1371860:CDS | 20.0% |
| !! | AGAATTTGAGAAAATACTTA+AGG | - | tig0019252:2760-2779 | Msa1371860:intron | 20.0% |
| !!! | TAAGAAAAGATTCCTTTTTT+AGG | - | tig0019252:2324-2343 | Msa1371860:CDS | 20.0% |
| !! | TTATTCAATGAACCTAAAAA+AGG | + | tig0019252:2339-2358 | Msa1371860:intergenic | 20.0% |
| !! | CTACTCAATTAATCTAAAAA+AGG | - | tig0019252:2398-2417 | Msa1371860:CDS | 20.0% |
| !! | AGAATTTGAGAAAATACTTA+AGG | - | tig0019252:2760-2779 | Msa1371860:intron | 20.0% |
| ! | TTTCTCAAATAGAGAATCAA+AGG | + | tig0019252:2172-2191 | Msa1371860:intergenic | 25.0% |
| ! | AAATCAGTTCATCAATAATC+AGG | - | tig0019252:2206-2225 | Msa1371860:CDS | 25.0% |
| !!! | TCTTTTCTTATTTTTGAGAC+CGG | + | tig0019252:2314-2333 | Msa1371860:intergenic | 25.0% |
| ! | AATTGAGTAGTTAATGTATG+TGG | + | tig0019252:2388-2407 | Msa1371860:intergenic | 25.0% |
| !!! | TCTTTTCTTATATTTGAGAC+AGG | - | tig0019252:2423-2442 | Msa1371860:intron | 25.0% |
| ! | ACAAATGATGACAATAAAGA+AGG | - | tig0019252:2664-2683 | Msa1371860:intron | 25.0% |
| ! | TTGAGAAAATACTTAAGGAA+AGG | - | tig0019252:2765-2784 | Msa1371860:intron | 25.0% |
| ! | TGAGAAAATACTTAAGGAAA+GGG | - | tig0019252:2766-2785 | Msa1371860:intron | 25.0% |
| ! | AATAACTTCGCATAACAATT+TGG | - | tig0019252:2799-2818 | Msa1371860:intron | 25.0% |
| !!! | TTCTTTTTCATTCCACATAT+TGG | + | tig0019252:3037-3056 | Msa1371860:intergenic | 25.0% |
| ! | AATATGTGGAATGAAAAAGA+AGG | - | tig0019252:3036-3055 | Msa1371860:CDS | 25.0% |
| ! | ATATGTGGAATGAAAAAGAA+GGG | - | tig0019252:3037-3056 | Msa1371860:CDS | 25.0% |
| ! | TTTCTCAAATAGAGAATCAA+AGG | + | tig0019252:2172-2191 | Msa1371860:intergenic | 25.0% |
| ! | AAATCAGTTCATCAATAATC+AGG | - | tig0019252:2206-2225 | Msa1371860:CDS | 25.0% |
| !!! | TCTTTTCTTATTTTTGAGAC+CGG | + | tig0019252:2314-2333 | Msa1371860:intergenic | 25.0% |
| ! | AATTGAGTAGTTAATGTATG+TGG | + | tig0019252:2388-2407 | Msa1371860:intergenic | 25.0% |
| !!! | TCTTTTCTTATATTTGAGAC+AGG | - | tig0019252:2423-2442 | Msa1371860:intron | 25.0% |
| ! | ACAAATGATGACAATAAAGA+AGG | - | tig0019252:2664-2683 | Msa1371860:intron | 25.0% |
| ! | TTGAGAAAATACTTAAGGAA+AGG | - | tig0019252:2765-2784 | Msa1371860:intron | 25.0% |
| ! | TGAGAAAATACTTAAGGAAA+GGG | - | tig0019252:2766-2785 | Msa1371860:intron | 25.0% |
| ! | AATAACTTCGCATAACAATT+TGG | - | tig0019252:2799-2818 | Msa1371860:intron | 25.0% |
| !!! | TTCTTTTTCATTCCACATAT+TGG | + | tig0019252:3037-3056 | Msa1371860:intergenic | 25.0% |
| ! | AATATGTGGAATGAAAAAGA+AGG | - | tig0019252:3036-3055 | Msa1371860:CDS | 25.0% |
| ! | ATATGTGGAATGAAAAAGAA+GGG | - | tig0019252:3037-3056 | Msa1371860:CDS | 25.0% |
| !!! | TTTTGTGGTTGATGATATTG+TGG | + | tig0019252:2072-2091 | Msa1371860:intergenic | 30.0% |
| AACTTAAGATGCTTGAAACT+TGG | + | tig0019252:2143-2162 | Msa1371860:intergenic | 30.0% | |
| TCAAATAGAGAATCAAAGGT+AGG | + | tig0019252:2168-2187 | Msa1371860:intergenic | 30.0% | |
| TCTATTTGAGAAACAAGTCA+AGG | - | tig0019252:2179-2198 | Msa1371860:CDS | 30.0% | |
| AAATAAAATAGTACTCCCTC+CGG | - | tig0019252:2292-2311 | Msa1371860:CDS | 30.0% | |
| ! | TTTCTTATATTTGAGACAGG+AGG | - | tig0019252:2426-2445 | Msa1371860:intron | 30.0% |
| ! | TTCTTATATTTGAGACAGGA+GGG | - | tig0019252:2427-2446 | Msa1371860:intron | 30.0% |
| AAATCTCGTAAGAAGATTTG+AGG | - | tig0019252:2727-2746 | Msa1371860:intron | 30.0% | |
| AATGATGCAAAATCATGTAC+CGG | - | tig0019252:2857-2876 | Msa1371860:CDS | 30.0% | |
| !!! | TTTTGTGGTTGATGATATTG+TGG | + | tig0019252:2072-2091 | Msa1371860:intergenic | 30.0% |
| AACTTAAGATGCTTGAAACT+TGG | + | tig0019252:2143-2162 | Msa1371860:intergenic | 30.0% | |
| TCAAATAGAGAATCAAAGGT+AGG | + | tig0019252:2168-2187 | Msa1371860:intergenic | 30.0% | |
| TCTATTTGAGAAACAAGTCA+AGG | - | tig0019252:2179-2198 | Msa1371860:CDS | 30.0% | |
| AAATAAAATAGTACTCCCTC+CGG | - | tig0019252:2292-2311 | Msa1371860:CDS | 30.0% | |
| ! | TTTCTTATATTTGAGACAGG+AGG | - | tig0019252:2426-2445 | Msa1371860:intron | 30.0% |
| ! | TTCTTATATTTGAGACAGGA+GGG | - | tig0019252:2427-2446 | Msa1371860:intron | 30.0% |
| AAATCTCGTAAGAAGATTTG+AGG | - | tig0019252:2727-2746 | Msa1371860:intron | 30.0% | |
| AATGATGCAAAATCATGTAC+CGG | - | tig0019252:2857-2876 | Msa1371860:CDS | 30.0% | |
| GGTAATCATGGATTTCCTTT+CGG | - | tig0019252:1970-1989 | Msa1371860:CDS | 35.0% | |
| TAATAACCATTGATGCCGAA+AGG | + | tig0019252:1988-2007 | Msa1371860:intergenic | 35.0% | |
| GGCATCAATGGTTATTATGT+CGG | - | tig0019252:1991-2010 | Msa1371860:CDS | 35.0% | |
| ATCAATGGTTATTATGTCGG+TGG | - | tig0019252:1994-2013 | Msa1371860:CDS | 35.0% | |
| TGTTGTAGTTCAATAGGTTG+TGG | + | tig0019252:2048-2067 | Msa1371860:intergenic | 35.0% | |
| TGTGGTTGTTGTAGTTCAAT+AGG | + | tig0019252:2054-2073 | Msa1371860:intergenic | 35.0% | |
| AACCACAAAATCAACAACAG+TGG | - | tig0019252:2082-2101 | Msa1371860:CDS | 35.0% | |
| AATTGGAAAAGGGAACAACA+TGG | + | tig0019252:2113-2132 | Msa1371860:intergenic | 35.0% | |
| TGGACATGAGAATTGGAAAA+GGG | + | tig0019252:2123-2142 | Msa1371860:intergenic | 35.0% | |
| TTGGACATGAGAATTGGAAA+AGG | + | tig0019252:2124-2143 | Msa1371860:intergenic | 35.0% | |
| TGAAACTTGGACATGAGAAT+TGG | + | tig0019252:2130-2149 | Msa1371860:intergenic | 35.0% | |
| !!! | TTCTTATTTTTGAGACCGGA+GGG | + | tig0019252:2310-2329 | Msa1371860:intergenic | 35.0% |
| !!! | TTTCTTATTTTTGAGACCGG+AGG | + | tig0019252:2311-2330 | Msa1371860:intergenic | 35.0% |
| TGCTACTACAACAACATCAA+AGG | - | tig0019252:2621-2640 | Msa1371860:intron | 35.0% | |
| GCTACTACAACAACATCAAA+GGG | - | tig0019252:2622-2641 | Msa1371860:intron | 35.0% | |
| TGCAAAGAAAACACATGAGT+TGG | - | tig0019252:2703-2722 | Msa1371860:intron | 35.0% | |
| TTCGCATAACAATTTGGAAG+AGG | - | tig0019252:2805-2824 | Msa1371860:intron | 35.0% | |
| AAGAGGAGAAGAAGAAACTA+AGG | - | tig0019252:2822-2841 | Msa1371860:CDS | 35.0% | |
| ! | GAGGATTTTGTGTTACACTT+GGG | + | tig0019252:2944-2963 | Msa1371860:intergenic | 35.0% |
| ! | TGAGGATTTTGTGTTACACT+TGG | + | tig0019252:2945-2964 | Msa1371860:intergenic | 35.0% |
| AAGTGTAACACAAAATCCTC+AGG | - | tig0019252:2944-2963 | Msa1371860:CDS | 35.0% | |
| !! | GTGTCTTATTTATGCCATGT+AGG | - | tig0019252:2966-2985 | Msa1371860:CDS | 35.0% |
| GGTAATCATGGATTTCCTTT+CGG | - | tig0019252:1970-1989 | Msa1371860:CDS | 35.0% | |
| TAATAACCATTGATGCCGAA+AGG | + | tig0019252:1988-2007 | Msa1371860:intergenic | 35.0% | |
| GGCATCAATGGTTATTATGT+CGG | - | tig0019252:1991-2010 | Msa1371860:CDS | 35.0% | |
| ATCAATGGTTATTATGTCGG+TGG | - | tig0019252:1994-2013 | Msa1371860:CDS | 35.0% | |
| TGTTGTAGTTCAATAGGTTG+TGG | + | tig0019252:2048-2067 | Msa1371860:intergenic | 35.0% | |
| TGTGGTTGTTGTAGTTCAAT+AGG | + | tig0019252:2054-2073 | Msa1371860:intergenic | 35.0% | |
| AACCACAAAATCAACAACAG+TGG | - | tig0019252:2082-2101 | Msa1371860:CDS | 35.0% | |
| AATTGGAAAAGGGAACAACA+TGG | + | tig0019252:2113-2132 | Msa1371860:intergenic | 35.0% | |
| TGGACATGAGAATTGGAAAA+GGG | + | tig0019252:2123-2142 | Msa1371860:intergenic | 35.0% | |
| TTGGACATGAGAATTGGAAA+AGG | + | tig0019252:2124-2143 | Msa1371860:intergenic | 35.0% | |
| TGAAACTTGGACATGAGAAT+TGG | + | tig0019252:2130-2149 | Msa1371860:intergenic | 35.0% | |
| !!! | TTCTTATTTTTGAGACCGGA+GGG | + | tig0019252:2310-2329 | Msa1371860:intergenic | 35.0% |
| !!! | TTTCTTATTTTTGAGACCGG+AGG | + | tig0019252:2311-2330 | Msa1371860:intergenic | 35.0% |
| TGCTACTACAACAACATCAA+AGG | - | tig0019252:2621-2640 | Msa1371860:intron | 35.0% | |
| GCTACTACAACAACATCAAA+GGG | - | tig0019252:2622-2641 | Msa1371860:intron | 35.0% | |
| TGCAAAGAAAACACATGAGT+TGG | - | tig0019252:2703-2722 | Msa1371860:intron | 35.0% | |
| TTCGCATAACAATTTGGAAG+AGG | - | tig0019252:2805-2824 | Msa1371860:intron | 35.0% | |
| AAGAGGAGAAGAAGAAACTA+AGG | - | tig0019252:2822-2841 | Msa1371860:CDS | 35.0% | |
| ! | GAGGATTTTGTGTTACACTT+GGG | + | tig0019252:2944-2963 | Msa1371860:intergenic | 35.0% |
| ! | TGAGGATTTTGTGTTACACT+TGG | + | tig0019252:2945-2964 | Msa1371860:intergenic | 35.0% |
| AAGTGTAACACAAAATCCTC+AGG | - | tig0019252:2944-2963 | Msa1371860:CDS | 35.0% | |
| !! | GTGTCTTATTTATGCCATGT+AGG | - | tig0019252:2966-2985 | Msa1371860:CDS | 35.0% |
| !!! | TGCCACTGTTGTTGATTTTG+TGG | + | tig0019252:2087-2106 | Msa1371860:intergenic | 40.0% |
| ACAAAATCAACAACAGTGGC+AGG | - | tig0019252:2086-2105 | Msa1371860:CDS | 40.0% | |
| CAAAATCAACAACAGTGGCA+GGG | - | tig0019252:2087-2106 | Msa1371860:CDS | 40.0% | |
| TCCTCCCAAAGATTCTATCA+CGG | + | tig0019252:2485-2504 | Msa1371860:intergenic | 40.0% | |
| ! | CACGTCTGACATGTTTTTCA+AGG | + | tig0019252:2901-2920 | Msa1371860:intergenic | 40.0% |
| CTTGAAAAACATGTCAGACG+TGG | - | tig0019252:2899-2918 | Msa1371860:CDS | 40.0% | |
| TGGCATAAATAAGACACCTG+AGG | + | tig0019252:2963-2982 | Msa1371860:intergenic | 40.0% | |
| CTCGAAGTTTGTCCAATATG+TGG | - | tig0019252:3022-3041 | Msa1371860:CDS | 40.0% | |
| !!! | TGCCACTGTTGTTGATTTTG+TGG | + | tig0019252:2087-2106 | Msa1371860:intergenic | 40.0% |
| ACAAAATCAACAACAGTGGC+AGG | - | tig0019252:2086-2105 | Msa1371860:CDS | 40.0% | |
| CAAAATCAACAACAGTGGCA+GGG | - | tig0019252:2087-2106 | Msa1371860:CDS | 40.0% | |
| TCCTCCCAAAGATTCTATCA+CGG | + | tig0019252:2485-2504 | Msa1371860:intergenic | 40.0% | |
| ! | CACGTCTGACATGTTTTTCA+AGG | + | tig0019252:2901-2920 | Msa1371860:intergenic | 40.0% |
| CTTGAAAAACATGTCAGACG+TGG | - | tig0019252:2899-2918 | Msa1371860:CDS | 40.0% | |
| TGGCATAAATAAGACACCTG+AGG | + | tig0019252:2963-2982 | Msa1371860:intergenic | 40.0% | |
| CTCGAAGTTTGTCCAATATG+TGG | - | tig0019252:3022-3041 | Msa1371860:CDS | 40.0% | |
| CCATGATTACCATGAGAGTG+TGG | + | tig0019252:1961-1980 | Msa1118350:intergenic | 45.0% | |
| CCACACTCTCATGGTAATCA+TGG | - | tig0019252:1958-1977 | Msa1371860:CDS | 45.0% | |
| GGATTTCCTTTCGGCATCAA+TGG | - | tig0019252:1979-1998 | Msa1371860:CDS | 45.0% | |
| TATTATGTCGGTGGAATCGC+AGG | - | tig0019252:2003-2022 | Msa1371860:CDS | 45.0% | |
| ATTATGTCGGTGGAATCGCA+GGG | - | tig0019252:2004-2023 | Msa1371860:CDS | 45.0% | |
| TCTCCCCGTGATAGAATCTT+TGG | - | tig0019252:2477-2496 | Msa1371860:intron | 45.0% | |
| CTCCCCGTGATAGAATCTTT+GGG | - | tig0019252:2478-2497 | Msa1371860:intron | 45.0% | |
| CTCCCAAAGATTCTATCACG+GGG | + | tig0019252:2483-2502 | Msa1371860:intergenic | 45.0% | |
| CCTCCCAAAGATTCTATCAC+GGG | + | tig0019252:2484-2503 | Msa1371860:intergenic | 45.0% | |
| GCTTACTTCTTCGCTTTCAC+CGG | + | tig0019252:2879-2898 | Msa1371860:intergenic | 45.0% | |
| CACGAAGAAAGATGCCTACA+TGG | + | tig0019252:2983-3002 | Msa1371860:intergenic | 45.0% | |
| CCATGATTACCATGAGAGTG+TGG | + | tig0019252:1961-1980 | Msa1371860:intergenic | 45.0% | |
| CCACACTCTCATGGTAATCA+TGG | - | tig0019252:1958-1977 | Msa1371860:CDS | 45.0% | |
| GGATTTCCTTTCGGCATCAA+TGG | - | tig0019252:1979-1998 | Msa1371860:CDS | 45.0% | |
| TATTATGTCGGTGGAATCGC+AGG | - | tig0019252:2003-2022 | Msa1371860:CDS | 45.0% | |
| ATTATGTCGGTGGAATCGCA+GGG | - | tig0019252:2004-2023 | Msa1371860:CDS | 45.0% | |
| TCTCCCCGTGATAGAATCTT+TGG | - | tig0019252:2477-2496 | Msa1371860:intron | 45.0% | |
| CTCCCCGTGATAGAATCTTT+GGG | - | tig0019252:2478-2497 | Msa1371860:intron | 45.0% | |
| CTCCCAAAGATTCTATCACG+GGG | + | tig0019252:2483-2502 | Msa1371860:intergenic | 45.0% | |
| CCTCCCAAAGATTCTATCAC+GGG | + | tig0019252:2484-2503 | Msa1371860:intergenic | 45.0% | |
| GCTTACTTCTTCGCTTTCAC+CGG | + | tig0019252:2879-2898 | Msa1371860:intergenic | 45.0% | |
| CACGAAGAAAGATGCCTACA+TGG | + | tig0019252:2983-3002 | Msa1371860:intergenic | 45.0% | |
| CCCGTGATAGAATCTTTGGG+AGG | - | tig0019252:2481-2500 | Msa1371860:intron | 50.0% | |
| CCCGTGATAGAATCTTTGGG+AGG | - | tig0019252:2481-2500 | Msa1371860:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019252 | gene | 1952 | 3093 | 1952 | ID=Msa1371860;Name=Msa1371860 |
| tig0019252 | mRNA | 1952 | 3093 | 1952 | ID=Msa1371860-mRNA-1;Parent=Msa1371860;Name=Msa1371860-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0|1|1|1|2|0|254 |
| tig0019252 | exon | 2818 | 3093 | 2818 | ID=Msa1371860-mRNA-1:exon:2480;Parent=Msa1371860-mRNA-1 |
| tig0019252 | exon | 1952 | 2440 | 1952 | ID=Msa1371860-mRNA-1:exon:2479;Parent=Msa1371860-mRNA-1 |
| tig0019252 | CDS | 2818 | 3093 | 2818 | ID=Msa1371860-mRNA-1:cds;Parent=Msa1371860-mRNA-1 |
| tig0019252 | CDS | 1952 | 2440 | 1952 | ID=Msa1371860-mRNA-1:cds;Parent=Msa1371860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
