Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0599070 | KEH17554.1 | 97.343 | 414 | 11 | 0 | 1 | 414 | 1 | 414 | 0.0 | 810 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0599070 | sp|Q9M0Y3|ENT3_ARATH | 70.000 | 410 | 122 | 1 | 3 | 412 | 6 | 414 | 0.0 | 597 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0599070 | Msa0677910 | 0.839624 | 1.417952e-57 | -8.615850e-47 |
| Msa0599070 | Msa0815320 | 0.816472 | 5.434111e-52 | -8.615850e-47 |
| Msa0599070 | Msa1020720 | 0.800610 | 1.329364e-48 | -8.615850e-47 |
| Msa0599070 | Msa1398550 | 0.844327 | 8.097431e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0599070 | MtrunA17_Chr4g0022871 | 97.343 | 414 | 11 | 0 | 1 | 414 | 1 | 414 | 0.0 | 810 |
| Msa0599070 | MtrunA17_Chr2g0323381 | 82.126 | 414 | 74 | 0 | 1 | 414 | 1 | 414 | 0.0 | 679 |
| Msa0599070 | MtrunA17_Chr4g0022861 | 80.905 | 398 | 76 | 0 | 17 | 414 | 1 | 398 | 0.0 | 663 |
| Msa0599070 | MtrunA17_Chr2g0280971 | 68.204 | 412 | 129 | 2 | 3 | 412 | 30 | 441 | 0.0 | 569 |
| Msa0599070 | MtrunA17_Chr2g0280991 | 68.873 | 408 | 125 | 1 | 7 | 412 | 14 | 421 | 0.0 | 564 |
| Msa0599070 | MtrunA17_Chr4g0022801 | 74.747 | 396 | 72 | 1 | 47 | 414 | 10 | 405 | 0.0 | 559 |
| Msa0599070 | MtrunA17_Chr8g0335821 | 58.127 | 363 | 150 | 1 | 52 | 412 | 2 | 364 | 1.16e-136 | 395 |
| Msa0599070 | MtrunA17_Chr1g0184961 | 77.165 | 254 | 46 | 2 | 47 | 293 | 104 | 352 | 4.27e-133 | 386 |
| Msa0599070 | MtrunA17_Chr4g0020331 | 32.029 | 409 | 250 | 8 | 11 | 410 | 26 | 415 | 9.97e-57 | 192 |
| Msa0599070 | MtrunA17_Chr3g0103741 | 30.711 | 394 | 244 | 8 | 26 | 410 | 50 | 423 | 2.05e-47 | 167 |
| Msa0599070 | MtrunA17_Chr2g0280961 | 57.047 | 149 | 60 | 2 | 224 | 368 | 83 | 231 | 7.16e-45 | 155 |
| Msa0599070 | MtrunA17_Chr2g0280961 | 56.180 | 89 | 39 | 0 | 52 | 140 | 2 | 90 | 4.96e-25 | 102 |
| Msa0599070 | MtrunA17_Chr4g0063911 | 27.423 | 423 | 264 | 9 | 1 | 410 | 6 | 398 | 1.29e-40 | 149 |
| Msa0599070 | MtrunA17_Chr1g0184971 | 79.365 | 63 | 13 | 0 | 296 | 358 | 2 | 64 | 4.56e-29 | 108 |
| Msa0599070 | MtrunA17_Chr4g0022811 | 74.419 | 43 | 11 | 0 | 4 | 46 | 2 | 44 | 8.78e-17 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0599070 | AT4G05120.1 | 70.000 | 410 | 122 | 1 | 3 | 412 | 6 | 414 | 0.0 | 597 |
| Msa0599070 | AT4G05120.2 | 70.000 | 410 | 122 | 1 | 3 | 412 | 6 | 414 | 0.0 | 597 |
| Msa0599070 | AT4G05110.3 | 65.366 | 410 | 141 | 1 | 3 | 412 | 6 | 414 | 0.0 | 558 |
| Msa0599070 | AT4G05110.1 | 65.366 | 410 | 141 | 1 | 3 | 412 | 6 | 414 | 0.0 | 558 |
| Msa0599070 | AT4G05110.2 | 65.122 | 410 | 142 | 1 | 3 | 412 | 6 | 414 | 0.0 | 556 |
| Msa0599070 | AT4G05140.1 | 63.902 | 410 | 148 | 0 | 3 | 412 | 6 | 415 | 0.0 | 551 |
| Msa0599070 | AT3G09990.1 | 63.951 | 405 | 145 | 1 | 11 | 414 | 13 | 417 | 0.0 | 540 |
| Msa0599070 | AT4G05130.1 | 61.893 | 412 | 156 | 1 | 3 | 414 | 6 | 416 | 0.0 | 538 |
| Msa0599070 | AT1G61630.1 | 60.488 | 410 | 161 | 1 | 4 | 412 | 5 | 414 | 1.27e-178 | 504 |
| Msa0599070 | AT1G70330.1 | 31.829 | 421 | 254 | 9 | 2 | 410 | 51 | 450 | 1.79e-54 | 187 |
| Msa0599070 | AT1G02630.1 | 28.678 | 401 | 249 | 7 | 16 | 410 | 20 | 389 | 2.51e-45 | 161 |
| Msa0599070 | AT1G02630.2 | 29.293 | 198 | 138 | 2 | 16 | 212 | 20 | 216 | 5.55e-23 | 99.4 |
Find 88 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGATTGGTTATGGTTAAT+AGG | 0.205341 | 4_2:-37124525 | Msa0599070:CDS |
| AGGAAATAAGCAATTGTTAT+TGG | 0.216800 | 4_2:-37125656 | Msa0599070:CDS |
| ACAAGGAAGCGGATTCTATT+TGG | 0.224058 | 4_2:-37126807 | Msa0599070:CDS |
| TACTTCACAATTGGTAATTT+AGG | 0.225152 | 4_2:+37125885 | None:intergenic |
| TTACTATGTTTATTTATTTC+CGG | 0.229116 | 4_2:-37127351 | Msa0599070:intron |
| GATAATGTTGACATCTTTCC+TGG | 0.253864 | 4_2:-37124776 | Msa0599070:CDS |
| ATGCTGACCTGAACAAATTC+TGG | 0.275263 | 4_2:+37126518 | None:intergenic |
| AGCAATATTTGAAAATTCTA+AGG | 0.295643 | 4_2:-37126187 | Msa0599070:CDS |
| CTCAAATTGTCTTAATTCTT+CGG | 0.301282 | 4_2:+37125684 | None:intergenic |
| ATCTTGGTATTGTTTCTTCT+TGG | 0.303762 | 4_2:-37124570 | Msa0599070:CDS |
| GTCTGTTGGCTTCTTCGAAA+TGG | 0.319059 | 4_2:-37127413 | Msa0599070:CDS |
| CTTGGCGGTGCTGCAGCATC+AGG | 0.325226 | 4_2:-37126243 | Msa0599070:CDS |
| TAATTGCTATGTATAATGTA+TGG | 0.328838 | 4_2:-37124939 | Msa0599070:CDS |
| TGCATAGTTAGTGGTGCATT+TGG | 0.338224 | 4_2:-37126596 | Msa0599070:CDS |
| GGGTAACACTTGATTGGTTA+TGG | 0.340185 | 4_2:-37124533 | Msa0599070:CDS |
| TCAGCTGACCTTGCTGCAGC+TGG | 0.400973 | 4_2:-37125822 | Msa0599070:CDS |
| GGAGGGATTGGAACATTCAT+TGG | 0.406478 | 4_2:-37126623 | Msa0599070:CDS |
| TCTGTTGGCTTCTTCGAAAT+GGG | 0.408795 | 4_2:-37127412 | Msa0599070:CDS |
| AAATGCATTGGGAAATATCT+TGG | 0.414446 | 4_2:-37124586 | Msa0599070:CDS |
| TTGCAGGGGTAACACTTGAT+TGG | 0.414767 | 4_2:-37124539 | Msa0599070:CDS |
| ACTGATCAAAATCTTGAAGT+TGG | 0.417735 | 4_2:-37124893 | Msa0599070:CDS |
| CATGAATCCAGAATTTGTTC+AGG | 0.422496 | 4_2:-37126525 | Msa0599070:intron |
| GAACGGTAGTACTTCACAAT+TGG | 0.426412 | 4_2:+37125876 | None:intergenic |
| TTATTGTTGTAGTCTTTCCT+TGG | 0.427988 | 4_2:-37126261 | Msa0599070:intron |
| GTGCTCTAACATCGGCTTTG+AGG | 0.429741 | 4_2:-37126221 | Msa0599070:CDS |
| TACAATTAAAACAGCCAAAA+CGG | 0.430063 | 4_2:+37126764 | None:intergenic |
| AAGGTCAGCTGAAACAGTTT+TGG | 0.431717 | 4_2:+37125833 | None:intergenic |
| TTGGTATTGTTTCTTCTTGG+CGG | 0.438078 | 4_2:-37124567 | Msa0599070:CDS |
| CATGCACAAGGAGGAATGAT+TGG | 0.442301 | 4_2:-37126560 | Msa0599070:CDS |
| AAGCTCAAACAAGGTTGATA+AGG | 0.443767 | 4_2:+37125938 | None:intergenic |
| TAGTTGGATTTAGCAACATC+TGG | 0.449427 | 4_2:-37126650 | Msa0599070:CDS |
| TATAATGTATGGGATCTTAT+CGG | 0.459552 | 4_2:-37124928 | Msa0599070:CDS |
| ACCTTGAGTACCATACTTTG+CGG | 0.460789 | 4_2:+37124804 | None:intergenic |
| ATTGGTATATGCATAGTTAG+TGG | 0.468620 | 4_2:-37126605 | Msa0599070:CDS |
| TTGTTGTAGTCTTTCCTTGG+CGG | 0.468717 | 4_2:-37126258 | Msa0599070:intron |
| GGGAAAATATACTGCAATAG+TGG | 0.484444 | 4_2:-37127435 | Msa0599070:CDS |
| ACATCTGGTAAAGGAGGGAT+TGG | 0.484610 | 4_2:-37126635 | Msa0599070:CDS |
| GATACCGGATTACACAGTTT+AGG | 0.487502 | 4_2:-37125556 | Msa0599070:CDS |
| AATTGCTATGTATAATGTAT+GGG | 0.488467 | 4_2:-37124938 | Msa0599070:CDS |
| GGGACCTGAACAAAATGCAT+TGG | 0.488651 | 4_2:-37124598 | Msa0599070:CDS |
| TGGTTATGGTTAATAGGTAA+AGG | 0.488739 | 4_2:-37124519 | Msa0599070:CDS |
| CTGACATTGTCTATATTCCC+TGG | 0.495635 | 4_2:-37125592 | Msa0599070:CDS |
| TTCTTCACCTTGTAGCCTTT+AGG | 0.495736 | 4_2:+37124709 | None:intergenic |
| GTACTTCTCGAAATGAGGTC+TGG | 0.497951 | 4_2:+37125796 | None:intergenic |
| AGCAATTCTTACTTACTATG+AGG | 0.505159 | 4_2:-37126841 | Msa0599070:CDS |
| GGACCTGAACAAAATGCATT+GGG | 0.505661 | 4_2:-37124597 | Msa0599070:CDS |
| GCTAGTGTTCCAACTGCAAA+TGG | 0.506628 | 4_2:+37126861 | None:intergenic |
| TGCAGAAATATCATCCCTCT+AGG | 0.522851 | 4_2:-37126905 | Msa0599070:intron |
| GATTTAGCAACATCTGGTAA+AGG | 0.531613 | 4_2:-37126644 | Msa0599070:CDS |
| GTTCTCACTTCTGCGCCTAA+AGG | 0.536219 | 4_2:-37124724 | Msa0599070:CDS |
| AAACCGTACTTCTCGAAATG+AGG | 0.538163 | 4_2:+37125791 | None:intergenic |
| TGTGCCTAAACTGTGTAATC+CGG | 0.542014 | 4_2:+37125552 | None:intergenic |
| ACAGACAGCGAGGTAGCCAT+TGG | 0.547272 | 4_2:+37124747 | None:intergenic |
| ATTCTGGATTCATGTATGAC+AGG | 0.549368 | 4_2:+37126534 | None:intergenic |
| ATACTGCAATAGTGGTCTGT+TGG | 0.551193 | 4_2:-37127427 | Msa0599070:CDS |
| CTGATGCTGCAGCACCGCCA+AGG | 0.552472 | 4_2:+37126244 | None:intergenic |
| ATAATGTTGACATCTTTCCT+GGG | 0.552580 | 4_2:-37124775 | Msa0599070:CDS |
| TGAGCCTCCACCACGTATTG+AGG | 0.554558 | 4_2:-37127581 | Msa0599070:intron |
| TATGGTTAATAGGTAAAGGA+TGG | 0.554780 | 4_2:-37124515 | Msa0599070:CDS |
| GTATATCAGCCATTTGCAGT+TGG | 0.555669 | 4_2:-37126870 | Msa0599070:CDS |
| CAAAGTATGGTACTCAAGGT+TGG | 0.556616 | 4_2:-37124801 | Msa0599070:CDS |
| AAATTGTCTTAATTCTTCGG+TGG | 0.562541 | 4_2:+37125687 | None:intergenic |
| TTCTGCGCCTAAAGGCTACA+AGG | 0.563679 | 4_2:-37124716 | Msa0599070:intron |
| TTTGCGGTGAAATAAAATGC+TGG | 0.573883 | 4_2:+37124820 | None:intergenic |
| AGCATCAGGTGCTCTAACAT+CGG | 0.577110 | 4_2:-37126229 | Msa0599070:CDS |
| ATCACCTCAATACGTGGTGG+AGG | 0.577633 | 4_2:+37127577 | None:intergenic |
| TTAGCAACATCTGGTAAAGG+AGG | 0.580672 | 4_2:-37126641 | Msa0599070:CDS |
| ACCGCAAAGTATGGTACTCA+AGG | 0.580721 | 4_2:-37124805 | Msa0599070:CDS |
| CGTTCAAAAGCAGCATCCGA+AGG | 0.583519 | 4_2:-37125858 | Msa0599070:CDS |
| TACAAGAGTAAGCACCCTAG+AGG | 0.583761 | 4_2:+37126890 | None:intergenic |
| ATATTTGAAAATTCTAAGGA+CGG | 0.599191 | 4_2:-37126183 | Msa0599070:CDS |
| GGTAGCCATTGGATATCCCC+AGG | 0.599248 | 4_2:+37124758 | None:intergenic |
| TCTTTCCTGGGGATATCCAA+TGG | 0.609276 | 4_2:-37124763 | Msa0599070:CDS |
| TAGCAACATCTGGTAAAGGA+GGG | 0.612233 | 4_2:-37126640 | Msa0599070:CDS |
| AACACAAAGAAGCTCAAACA+AGG | 0.615784 | 4_2:+37125929 | None:intergenic |
| TTAGCAGATGCTCATGCACA+AGG | 0.620251 | 4_2:-37126572 | Msa0599070:CDS |
| GCAGAAATATCATCCCTCTA+GGG | 0.623345 | 4_2:-37126904 | Msa0599070:intron |
| GTTCAAAAGCAGCATCCGAA+GGG | 0.625870 | 4_2:-37125857 | Msa0599070:CDS |
| ACAAGAGTAAGCACCCTAGA+GGG | 0.631895 | 4_2:+37126891 | None:intergenic |
| TCTAAGGACGGACTTCGCAA+AGG | 0.638434 | 4_2:-37126171 | Msa0599070:CDS |
| TTAAGACAATTTGAGCGCAG+AGG | 0.639728 | 4_2:-37125676 | Msa0599070:CDS |
| TAATGTTGACATCTTTCCTG+GGG | 0.646765 | 4_2:-37124774 | Msa0599070:CDS |
| GATTACACAGTTTAGGCACA+TGG | 0.648704 | 4_2:-37125549 | Msa0599070:intron |
| TCTGGATTCCAGCTGCAGCA+AGG | 0.649624 | 4_2:+37125814 | None:intergenic |
| TATATCACCTCAATACGTGG+TGG | 0.675337 | 4_2:+37127574 | None:intergenic |
| ATATATATCACCTCAATACG+TGG | 0.678311 | 4_2:+37127571 | None:intergenic |
| AAGTGAGAACACAGACAGCG+AGG | 0.688797 | 4_2:+37124737 | None:intergenic |
| GCAGATGCTCATGCACAAGG+AGG | 0.707799 | 4_2:-37126569 | Msa0599070:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAGCATATATAATTT+CGG | + | chr4_2:37124589-37124608 | None:intergenic | 10.0% |
| !!! | TATGCTTTTTTTTTTTTTGA+AGG | - | chr4_2:37124597-37124616 | Msa0599070:CDS | 15.0% |
| !! | TTACTATGTTTATTTATTTC+CGG | - | chr4_2:37124753-37124772 | Msa0599070:CDS | 15.0% |
| !! | AAGTTAACAAAAAAATTAAC+AGG | + | chr4_2:37125369-37125388 | None:intergenic | 15.0% |
| !!! | AAATTGATTTCTTTTAGTAT+CGG | - | chr4_2:37126057-37126076 | Msa0599070:intron | 15.0% |
| !! | TCATTAGTTATTACTTATTT+CGG | + | chr4_2:37126783-37126802 | None:intergenic | 15.0% |
| !!! | AATGATATTTTAAGAAGTAA+TGG | - | chr4_2:37127022-37127041 | Msa0599070:intron | 15.0% |
| !!! | TTGTATGTTTTTACTTTTTT+AGG | - | chr4_2:37127485-37127504 | Msa0599070:intron | 15.0% |
| !!! | TGTATGTTTTTACTTTTTTA+GGG | - | chr4_2:37127486-37127505 | Msa0599070:intron | 15.0% |
| !!! | TTAAATTATTTTGCATTTGC+AGG | - | chr4_2:37124648-37124667 | Msa0599070:intron | 20.0% |
| !!! | TAAATTATTTTGCATTTGCA+GGG | - | chr4_2:37124649-37124668 | Msa0599070:intron | 20.0% |
| !! | TGGTTATGTTTATTTATTTC+CGG | - | chr4_2:37124833-37124852 | Msa0599070:CDS | 20.0% |
| !! | CAAAATAAATGATGTGTAAT+AGG | + | chr4_2:37124957-37124976 | None:intergenic | 20.0% |
| !!! | ACATCATTTATTTTGTAATC+TGG | - | chr4_2:37124962-37124981 | Msa0599070:intron | 20.0% |
| !! | TATAACAGATATAACAAAAG+TGG | + | chr4_2:37125052-37125071 | None:intergenic | 20.0% |
| !! | TTATATAATGATTGCAATTG+CGG | - | chr4_2:37125735-37125754 | Msa0599070:intron | 20.0% |
| !! | AGCAATATTTGAAAATTCTA+AGG | - | chr4_2:37125917-37125936 | Msa0599070:CDS | 20.0% |
| !!! | ATATTTGAAAATTCTAAGGA+CGG | - | chr4_2:37125921-37125940 | Msa0599070:CDS | 20.0% |
| !! | CAAAAATGAAAAACATATCT+CGG | - | chr4_2:37126699-37126718 | Msa0599070:intron | 20.0% |
| !! | AATTGATATTTGAATGTGTT+GGG | + | chr4_2:37126899-37126918 | None:intergenic | 20.0% |
| !! | AAATTGATATTTGAATGTGT+TGG | + | chr4_2:37126900-37126919 | None:intergenic | 20.0% |
| !! | TTGATATTTCCATTTATTAC+AGG | - | chr4_2:37127129-37127148 | Msa0599070:intron | 20.0% |
| !! | TAATTGCTATGTATAATGTA+TGG | - | chr4_2:37127165-37127184 | Msa0599070:intron | 20.0% |
| !! | AATTGCTATGTATAATGTAT+GGG | - | chr4_2:37127166-37127185 | Msa0599070:intron | 20.0% |
| ! | TACAATTAAAACAGCCAAAA+CGG | + | chr4_2:37125343-37125362 | None:intergenic | 25.0% |
| ! | ACAATGCTAACTTTGATATT+CGG | - | chr4_2:37125646-37125665 | Msa0599070:CDS | 25.0% |
| !! | ACATATGCAACTCTTTTTAA+AGG | - | chr4_2:37125818-37125837 | Msa0599070:CDS | 25.0% |
| ! | TGGATATCTTTATGAATTGT+AGG | + | chr4_2:37126085-37126104 | None:intergenic | 25.0% |
| !! | TACTTCACAATTGGTAATTT+AGG | + | chr4_2:37126222-37126241 | None:intergenic | 25.0% |
| !! | CTTTTCTTTTCAATTTCTCA+CGG | - | chr4_2:37126336-37126355 | Msa0599070:intron | 25.0% |
| !!! | GACTAATTTGTGTTTTTTTC+AGG | - | chr4_2:37126394-37126413 | Msa0599070:intron | 25.0% |
| ! | CTCAAATTGTCTTAATTCTT+CGG | + | chr4_2:37126423-37126442 | None:intergenic | 25.0% |
| ! | AGGAAATAAGCAATTGTTAT+TGG | - | chr4_2:37126448-37126467 | Msa0599070:intron | 25.0% |
| ! | TATCTTCTGATAAAAATCCA+GGG | + | chr4_2:37126532-37126551 | None:intergenic | 25.0% |
| ! | GATTATCAAATACACATTTG+AGG | - | chr4_2:37126756-37126775 | Msa0599070:intron | 25.0% |
| ! | TTATCTTTCGCTATTCAATT+TGG | + | chr4_2:37126822-37126841 | None:intergenic | 25.0% |
| ! | AATAGCGAAAGATAAATTTG+AGG | - | chr4_2:37126827-37126846 | Msa0599070:CDS | 25.0% |
| ! | ATATCATTCCAATATCTATC+TGG | + | chr4_2:37127010-37127029 | None:intergenic | 25.0% |
| ! | TGTATGTTCAATTTCAAAAC+TGG | - | chr4_2:37127106-37127125 | Msa0599070:intron | 25.0% |
| ! | TATAATGTATGGGATCTTAT+CGG | - | chr4_2:37127176-37127195 | Msa0599070:intron | 25.0% |
| ATATATATCACCTCAATACG+TGG | + | chr4_2:37124536-37124555 | None:intergenic | 30.0% | |
| TCAGAAAGTAGATACATTAC+CGG | + | chr4_2:37124775-37124794 | None:intergenic | 30.0% | |
| TAACCAGAGTGAATAGTTAA+CGG | + | chr4_2:37124819-37124838 | None:intergenic | 30.0% | |
| TCAGAAAGTAGATACATTAC+CGG | + | chr4_2:37124775-37124794 | None:intergenic | 30.0% | |
| TAACCAGAGTGAATAGTTAA+CGG | + | chr4_2:37124819-37124838 | None:intergenic | 30.0% | |
| ! | TATTTCTGCACAAATAGGAA+AGG | + | chr4_2:37125189-37125208 | None:intergenic | 30.0% |
| ! | GATGATATTTCTGCACAAAT+AGG | + | chr4_2:37125194-37125213 | None:intergenic | 30.0% |
| AGCAATTCTTACTTACTATG+AGG | - | chr4_2:37125263-37125282 | Msa0599070:intron | 30.0% | |
| ATGAGGCAAAAATCAATACA+AGG | - | chr4_2:37125280-37125299 | Msa0599070:intron | 30.0% | |
| CAAAAATCAATACAAGGAAG+CGG | - | chr4_2:37125286-37125305 | Msa0599070:intron | 30.0% | |
| !! | ACTATTTTTCTTAGCCGTTT+TGG | - | chr4_2:37125326-37125345 | Msa0599070:intron | 30.0% |
| ATTCCTTCAAATTGTGCATT+TGG | - | chr4_2:37125391-37125410 | Msa0599070:intron | 30.0% | |
| TTCCTTCAAATTGTGCATTT+GGG | - | chr4_2:37125392-37125411 | Msa0599070:intron | 30.0% | |
| ATTGGTATATGCATAGTTAG+TGG | - | chr4_2:37125499-37125518 | Msa0599070:intron | 30.0% | |
| CAATGCTAACTTTGATATTC+GGG | - | chr4_2:37125647-37125666 | Msa0599070:CDS | 30.0% | |
| !! | GCATAAAATTGTTTCTGCAT+GGG | + | chr4_2:37125692-37125711 | None:intergenic | 30.0% |
| !!! | TATAAAAGTTTTAGACGCCT+CGG | + | chr4_2:37125720-37125739 | None:intergenic | 30.0% |
| AAAAGAGTTGCATATGTTGA+AGG | + | chr4_2:37125815-37125834 | None:intergenic | 30.0% | |
| TTATTGTTGTAGTCTTTCCT+TGG | - | chr4_2:37125843-37125862 | Msa0599070:CDS | 30.0% | |
| CAAACTGAATCTCAATAGTA+AGG | + | chr4_2:37126367-37126386 | None:intergenic | 30.0% | |
| AAATTGTCTTAATTCTTCGG+TGG | + | chr4_2:37126420-37126439 | None:intergenic | 30.0% | |
| GTATCTTCTGATAAAAATCC+AGG | + | chr4_2:37126533-37126552 | None:intergenic | 30.0% | |
| ! | GGATTTTTATCAGAAGATAC+CGG | - | chr4_2:37126533-37126552 | Msa0599070:CDS | 30.0% |
| !!! | ATCCTTTCATCCTTTGTTTT+TGG | - | chr4_2:37126594-37126613 | Msa0599070:CDS | 30.0% |
| AACCAAAAACAAAGGATGAA+AGG | + | chr4_2:37126599-37126618 | None:intergenic | 30.0% | |
| CCAAAAAGAACCAAAAACAA+AGG | + | chr4_2:37126607-37126626 | None:intergenic | 30.0% | |
| !!! | CCTTTGTTTTTGGTTCTTTT+TGG | - | chr4_2:37126604-37126623 | Msa0599070:CDS | 30.0% |
| TTTCAATCCCTAAATGTATG+TGG | - | chr4_2:37126651-37126670 | Msa0599070:intron | 30.0% | |
| ATATCTCACCAGATAGATAT+TGG | - | chr4_2:37126999-37127018 | Msa0599070:intron | 30.0% | |
| !! | TAAACAACAAAAGTGGGTTA+AGG | - | chr4_2:37127071-37127090 | Msa0599070:intron | 30.0% |
| !! | AACTTCAAGATTTTGATCAG+TGG | + | chr4_2:37127212-37127231 | None:intergenic | 30.0% |
| ACTGATCAAAATCTTGAAGT+TGG | - | chr4_2:37127211-37127230 | Msa0599070:intron | 30.0% | |
| !! | TTTTATTTCACCGCAAAGTA+TGG | - | chr4_2:37127290-37127309 | Msa0599070:intron | 30.0% |
| ATAATGTTGACATCTTTCCT+GGG | - | chr4_2:37127329-37127348 | Msa0599070:intron | 30.0% | |
| !! | GAAGTATTCTAGTTTCTTGA+AGG | + | chr4_2:37127422-37127441 | None:intergenic | 30.0% |
| AAGAAACTAGAATACTTCAG+AGG | - | chr4_2:37127424-37127443 | Msa0599070:CDS | 30.0% | |
| AAATGCATTGGGAAATATCT+TGG | - | chr4_2:37127518-37127537 | Msa0599070:intron | 30.0% | |
| ! | ATCTTGGTATTGTTTCTTCT+TGG | - | chr4_2:37127534-37127553 | Msa0599070:intron | 30.0% |
| ! | CTTGATTGGTTATGGTTAAT+AGG | - | chr4_2:37127579-37127598 | Msa0599070:intron | 30.0% |
| TGGTTATGGTTAATAGGTAA+AGG | - | chr4_2:37127585-37127604 | Msa0599070:CDS | 30.0% | |
| TATGGTTAATAGGTAAAGGA+TGG | - | chr4_2:37127589-37127608 | Msa0599070:CDS | 30.0% | |
| GGGAAAATATACTGCAATAG+TGG | - | chr4_2:37124669-37124688 | Msa0599070:intron | 35.0% | |
| TATCCGTTAACTATTCACTC+TGG | - | chr4_2:37124813-37124832 | Msa0599070:CDS | 35.0% | |
| TATCCGTTAACTATTCACTC+TGG | - | chr4_2:37124813-37124832 | Msa0599070:CDS | 35.0% | |
| !!! | TTGTAATCTGGTTTTATGCC+CGG | - | chr4_2:37124974-37124993 | Msa0599070:intron | 35.0% |
| CTGATGTGTAGATGTTTGTT+AGG | - | chr4_2:37125008-37125027 | Msa0599070:intron | 35.0% | |
| AACCCAAATGCACAATTTGA+AGG | + | chr4_2:37125397-37125416 | None:intergenic | 35.0% | |
| TAGTTGGATTTAGCAACATC+TGG | - | chr4_2:37125454-37125473 | Msa0599070:intron | 35.0% | |
| GATTTAGCAACATCTGGTAA+AGG | - | chr4_2:37125460-37125479 | Msa0599070:intron | 35.0% | |
| ATTCTGGATTCATGTATGAC+AGG | + | chr4_2:37125573-37125592 | None:intergenic | 35.0% | |
| ! | CATGAATCCAGAATTTGTTC+AGG | - | chr4_2:37125579-37125598 | Msa0599070:CDS | 35.0% |
| !! | GGCATAAAATTGTTTCTGCA+TGG | + | chr4_2:37125693-37125712 | None:intergenic | 35.0% |
| ATCCATGATCATGATTCATG+TGG | - | chr4_2:37126100-37126119 | Msa0599070:intron | 35.0% | |
| TACCACATGAATCATGATCA+TGG | + | chr4_2:37126105-37126124 | None:intergenic | 35.0% | |
| !! | AAGCTCAAACAAGGTTGATA+AGG | + | chr4_2:37126169-37126188 | None:intergenic | 35.0% |
| AACACAAAGAAGCTCAAACA+AGG | + | chr4_2:37126178-37126197 | None:intergenic | 35.0% | |
| GTATCCACCACATACATTTA+GGG | + | chr4_2:37126661-37126680 | None:intergenic | 35.0% | |
| AGTATCCACCACATACATTT+AGG | + | chr4_2:37126662-37126681 | None:intergenic | 35.0% | |
| !! | AATGTATGTGGTGGATACTA+TGG | - | chr4_2:37126663-37126682 | Msa0599070:intron | 35.0% |
| CTATCTGGTGAGATATGATT+AGG | + | chr4_2:37126995-37127014 | None:intergenic | 35.0% | |
| ! | TCTGCTCTAAACAACAAAAG+TGG | - | chr4_2:37127064-37127083 | Msa0599070:intron | 35.0% |
| ! | CTGCTCTAAACAACAAAAGT+GGG | - | chr4_2:37127065-37127084 | Msa0599070:intron | 35.0% |
| ! | AAGAGCGTACCTGTAATAAA+TGG | + | chr4_2:37127141-37127160 | None:intergenic | 35.0% |
| TTTGCGGTGAAATAAAATGC+TGG | + | chr4_2:37127287-37127306 | None:intergenic | 35.0% | |
| GATAATGTTGACATCTTTCC+TGG | - | chr4_2:37127328-37127347 | Msa0599070:intron | 35.0% | |
| TAATGTTGACATCTTTCCTG+GGG | - | chr4_2:37127330-37127349 | Msa0599070:intron | 35.0% | |
| ! | TTTCCCAATGCATTTTGTTC+AGG | + | chr4_2:37127513-37127532 | None:intergenic | 35.0% |
| ! | TTGGTATTGTTTCTTCTTGG+CGG | - | chr4_2:37127537-37127556 | Msa0599070:intron | 35.0% |
| TATATCACCTCAATACGTGG+TGG | + | chr4_2:37124533-37124552 | None:intergenic | 40.0% | |
| ATACTGCAATAGTGGTCTGT+TGG | - | chr4_2:37124677-37124696 | Msa0599070:intron | 40.0% | |
| !! | TCTGTTGGCTTCTTCGAAAT+GGG | - | chr4_2:37124692-37124711 | Msa0599070:intron | 40.0% |
| ! | GAAATGGGTGTCTTTTCTCT+TGG | - | chr4_2:37124707-37124726 | Msa0599070:intron | 40.0% |
| ! | TGAAAGTACAAAGAGCTGAG+AGG | + | chr4_2:37125121-37125140 | None:intergenic | 40.0% |
| TGCAGAAATATCATCCCTCT+AGG | - | chr4_2:37125199-37125218 | Msa0599070:intron | 40.0% | |
| GCAGAAATATCATCCCTCTA+GGG | - | chr4_2:37125200-37125219 | Msa0599070:intron | 40.0% | |
| GTATATCAGCCATTTGCAGT+TGG | - | chr4_2:37125234-37125253 | Msa0599070:intron | 40.0% | |
| ! | ACAAGGAAGCGGATTCTATT+TGG | - | chr4_2:37125297-37125316 | Msa0599070:intron | 40.0% |
| ACCTATTTACGTGTCGTAGT+TGG | - | chr4_2:37125438-37125457 | Msa0599070:intron | 40.0% | |
| TCCAACTACGACACGTAAAT+AGG | + | chr4_2:37125442-37125461 | None:intergenic | 40.0% | |
| TTAGCAACATCTGGTAAAGG+AGG | - | chr4_2:37125463-37125482 | Msa0599070:intron | 40.0% | |
| TAGCAACATCTGGTAAAGGA+GGG | - | chr4_2:37125464-37125483 | Msa0599070:intron | 40.0% | |
| TGCATAGTTAGTGGTGCATT+TGG | - | chr4_2:37125508-37125527 | Msa0599070:intron | 40.0% | |
| ATGCTGACCTGAACAAATTC+TGG | + | chr4_2:37125589-37125608 | None:intergenic | 40.0% | |
| ! | ACAATTTTATGCCTTTGCCG+AGG | - | chr4_2:37125700-37125719 | Msa0599070:intron | 40.0% |
| TTGTTGTAGTCTTTCCTTGG+CGG | - | chr4_2:37125846-37125865 | Msa0599070:CDS | 40.0% | |
| AAGAACTGCATGAATCAGAG+AGG | + | chr4_2:37126139-37126158 | None:intergenic | 40.0% | |
| GAACGGTAGTACTTCACAAT+TGG | + | chr4_2:37126231-37126250 | None:intergenic | 40.0% | |
| !!! | TGAAACAGTTTTGGACCCTT+CGG | + | chr4_2:37126265-37126284 | None:intergenic | 40.0% |
| ! | AAGGTCAGCTGAAACAGTTT+TGG | + | chr4_2:37126274-37126293 | None:intergenic | 40.0% |
| AGACCTCATTTCGAGAAGTA+CGG | - | chr4_2:37126310-37126329 | Msa0599070:intron | 40.0% | |
| AAACCGTACTTCTCGAAATG+AGG | + | chr4_2:37126316-37126335 | None:intergenic | 40.0% | |
| TTAAGACAATTTGAGCGCAG+AGG | - | chr4_2:37126428-37126447 | Msa0599070:intron | 40.0% | |
| CTGACATTGTCTATATTCCC+TGG | - | chr4_2:37126512-37126531 | Msa0599070:intron | 40.0% | |
| GATACCGGATTACACAGTTT+AGG | - | chr4_2:37126548-37126567 | Msa0599070:CDS | 40.0% | |
| TGTGCCTAAACTGTGTAATC+CGG | + | chr4_2:37126555-37126574 | None:intergenic | 40.0% | |
| GATTACACAGTTTAGGCACA+TGG | - | chr4_2:37126555-37126574 | Msa0599070:CDS | 40.0% | |
| CAATCCCTAAATGTATGTGG+TGG | - | chr4_2:37126654-37126673 | Msa0599070:intron | 40.0% | |
| ACCTTGAGTACCATACTTTG+CGG | + | chr4_2:37127303-37127322 | None:intergenic | 40.0% | |
| CAAAGTATGGTACTCAAGGT+TGG | - | chr4_2:37127303-37127322 | Msa0599070:intron | 40.0% | |
| TTCTTCACCTTGTAGCCTTT+AGG | + | chr4_2:37127398-37127417 | None:intergenic | 40.0% | |
| GGACCTGAACAAAATGCATT+GGG | - | chr4_2:37127507-37127526 | Msa0599070:intron | 40.0% | |
| !! | TTCTTGGCGGTATTTTTGCA+GGG | - | chr4_2:37127550-37127569 | Msa0599070:intron | 40.0% |
| ! | GGGTAACACTTGATTGGTTA+TGG | - | chr4_2:37127571-37127590 | Msa0599070:intron | 40.0% |
| !! | GTCTGTTGGCTTCTTCGAAA+TGG | - | chr4_2:37124691-37124710 | Msa0599070:intron | 45.0% |
| CTGGTTAGCGTTAATGTCTC+TGG | - | chr4_2:37124912-37124931 | Msa0599070:CDS | 45.0% | |
| CCAAATGCTCGGCTCAAAAA+GGG | + | chr4_2:37125078-37125097 | None:intergenic | 45.0% | |
| ACCAAATGCTCGGCTCAAAA+AGG | + | chr4_2:37125079-37125098 | None:intergenic | 45.0% | |
| ACAAGAGTAAGCACCCTAGA+GGG | + | chr4_2:37125216-37125235 | None:intergenic | 45.0% | |
| TACAAGAGTAAGCACCCTAG+AGG | + | chr4_2:37125217-37125236 | None:intergenic | 45.0% | |
| GCTAGTGTTCCAACTGCAAA+TGG | + | chr4_2:37125246-37125265 | None:intergenic | 45.0% | |
| ACATCTGGTAAAGGAGGGAT+TGG | - | chr4_2:37125469-37125488 | Msa0599070:intron | 45.0% | |
| GGAGGGATTGGAACATTCAT+TGG | - | chr4_2:37125481-37125500 | Msa0599070:intron | 45.0% | |
| TTAGCAGATGCTCATGCACA+AGG | - | chr4_2:37125532-37125551 | Msa0599070:intron | 45.0% | |
| CATGCACAAGGAGGAATGAT+TGG | - | chr4_2:37125544-37125563 | Msa0599070:intron | 45.0% | |
| GTTCAGGTCAGCATCATCAA+TGG | - | chr4_2:37125595-37125614 | Msa0599070:CDS | 45.0% | |
| AGCATCAGGTGCTCTAACAT+CGG | - | chr4_2:37125875-37125894 | Msa0599070:CDS | 45.0% | |
| !!! | CTTCGGATGCTGCTTTTGAA+CGG | + | chr4_2:37126248-37126267 | None:intergenic | 45.0% |
| GTTCAAAAGCAGCATCCGAA+GGG | - | chr4_2:37126247-37126266 | Msa0599070:CDS | 45.0% | |
| GTACTTCTCGAAATGAGGTC+TGG | + | chr4_2:37126311-37126330 | None:intergenic | 45.0% | |
| ACCGCAAAGTATGGTACTCA+AGG | - | chr4_2:37127299-37127318 | Msa0599070:intron | 45.0% | |
| TCTTTCCTGGGGATATCCAA+TGG | - | chr4_2:37127341-37127360 | Msa0599070:intron | 45.0% | |
| GGGACCTGAACAAAATGCAT+TGG | - | chr4_2:37127506-37127525 | Msa0599070:intron | 45.0% | |
| !! | CTTCTTGGCGGTATTTTTGC+AGG | - | chr4_2:37127549-37127568 | Msa0599070:intron | 45.0% |
| !! | TCTTGGCGGTATTTTTGCAG+GGG | - | chr4_2:37127551-37127570 | Msa0599070:intron | 45.0% |
| TTGCAGGGGTAACACTTGAT+TGG | - | chr4_2:37127565-37127584 | Msa0599070:intron | 45.0% | |
| !!! | TTATTTTATATATTTTTCTT+TGG | - | chr4_2:37125143-37125162 | Msa0599070:intron | 5.0% |
| ATCACCTCAATACGTGGTGG+AGG | + | chr4_2:37124530-37124549 | None:intergenic | 50.0% | |
| ACATCAGACAACCTAACGCC+GGG | + | chr4_2:37124995-37125014 | None:intergenic | 50.0% | |
| CACATCAGACAACCTAACGC+CGG | + | chr4_2:37124996-37125015 | None:intergenic | 50.0% | |
| !! | CCCTTTTTGAGCCGAGCATT+TGG | - | chr4_2:37125075-37125094 | Msa0599070:intron | 50.0% |
| TGACCCAGCAACCAAATGCT+CGG | + | chr4_2:37125089-37125108 | None:intergenic | 50.0% | |
| !!! | AGTTTTAGACGCCTCGGCAA+AGG | + | chr4_2:37125714-37125733 | None:intergenic | 50.0% |
| !! | GTGCTCTAACATCGGCTTTG+AGG | - | chr4_2:37125883-37125902 | Msa0599070:CDS | 50.0% |
| ! | TCTAAGGACGGACTTCGCAA+AGG | - | chr4_2:37125933-37125952 | Msa0599070:CDS | 50.0% |
| CAGCACTCTGATGCTTAGCA+TGG | - | chr4_2:37125968-37125987 | Msa0599070:intron | 50.0% | |
| CGTTCAAAAGCAGCATCCGA+AGG | - | chr4_2:37126246-37126265 | Msa0599070:CDS | 50.0% | |
| AAGTGAGAACACAGACAGCG+AGG | + | chr4_2:37127370-37127389 | None:intergenic | 50.0% | |
| GTTCTCACTTCTGCGCCTAA+AGG | - | chr4_2:37127380-37127399 | Msa0599070:CDS | 50.0% | |
| TTCTGCGCCTAAAGGCTACA+AGG | - | chr4_2:37127388-37127407 | Msa0599070:CDS | 50.0% | |
| TGAGCCTCCACCACGTATTG+AGG | - | chr4_2:37124523-37124542 | Msa0599070:CDS | 55.0% | |
| !!! | CTGGTTTTATGCCCGGCGTT+AGG | - | chr4_2:37124981-37125000 | Msa0599070:intron | 55.0% |
| TGAGCCGAGCATTTGGTTGC+TGG | - | chr4_2:37125082-37125101 | Msa0599070:intron | 55.0% | |
| GAGCCGAGCATTTGGTTGCT+GGG | - | chr4_2:37125083-37125102 | Msa0599070:intron | 55.0% | |
| GAGCATTTGGTTGCTGGGTC+AGG | - | chr4_2:37125088-37125107 | Msa0599070:intron | 55.0% | |
| GCAGATGCTCATGCACAAGG+AGG | - | chr4_2:37125535-37125554 | Msa0599070:intron | 55.0% | |
| TCTGGATTCCAGCTGCAGCA+AGG | + | chr4_2:37126293-37126312 | None:intergenic | 55.0% | |
| GGTAGCCATTGGATATCCCC+AGG | + | chr4_2:37127349-37127368 | None:intergenic | 55.0% | |
| ACAGACAGCGAGGTAGCCAT+TGG | + | chr4_2:37127360-37127379 | None:intergenic | 55.0% | |
| TCAGCTGACCTTGCTGCAGC+TGG | - | chr4_2:37126282-37126301 | Msa0599070:intron | 60.0% | |
| CTGATGCTGCAGCACCGCCA+AGG | + | chr4_2:37125863-37125882 | None:intergenic | 65.0% | |
| !! | CTTGGCGGTGCTGCAGCATC+AGG | - | chr4_2:37125861-37125880 | Msa0599070:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 37124512 | 37127614 | 37124512 | ID=Msa0599070;Name=Msa0599070 |
| chr4_2 | mRNA | 37124512 | 37127614 | 37124512 | ID=Msa0599070-mRNA-1;Parent=Msa0599070;Name=Msa0599070-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0|0|1|1|1|9|0|414 |
| chr4_2 | exon | 37127582 | 37127614 | 37127582 | ID=Msa0599070-mRNA-1:exon:8409;Parent=Msa0599070-mRNA-1 |
| chr4_2 | exon | 37127352 | 37127456 | 37127352 | ID=Msa0599070-mRNA-1:exon:8408;Parent=Msa0599070-mRNA-1 |
| chr4_2 | exon | 37126767 | 37126922 | 37126767 | ID=Msa0599070-mRNA-1:exon:8407;Parent=Msa0599070-mRNA-1 |
| chr4_2 | exon | 37126526 | 37126669 | 37126526 | ID=Msa0599070-mRNA-1:exon:8406;Parent=Msa0599070-mRNA-1 |
| chr4_2 | exon | 37126166 | 37126271 | 37126166 | ID=Msa0599070-mRNA-1:exon:8405;Parent=Msa0599070-mRNA-1 |
| chr4_2 | exon | 37125800 | 37125972 | 37125800 | ID=Msa0599070-mRNA-1:exon:8404;Parent=Msa0599070-mRNA-1 |
| chr4_2 | exon | 37125550 | 37125710 | 37125550 | ID=Msa0599070-mRNA-1:exon:8403;Parent=Msa0599070-mRNA-1 |
| chr4_2 | exon | 37124717 | 37124975 | 37124717 | ID=Msa0599070-mRNA-1:exon:8402;Parent=Msa0599070-mRNA-1 |
| chr4_2 | exon | 37124512 | 37124619 | 37124512 | ID=Msa0599070-mRNA-1:exon:8401;Parent=Msa0599070-mRNA-1 |
| chr4_2 | CDS | 37127582 | 37127614 | 37127582 | ID=Msa0599070-mRNA-1:cds;Parent=Msa0599070-mRNA-1 |
| chr4_2 | CDS | 37127352 | 37127456 | 37127352 | ID=Msa0599070-mRNA-1:cds;Parent=Msa0599070-mRNA-1 |
| chr4_2 | CDS | 37126767 | 37126922 | 37126767 | ID=Msa0599070-mRNA-1:cds;Parent=Msa0599070-mRNA-1 |
| chr4_2 | CDS | 37126526 | 37126669 | 37126526 | ID=Msa0599070-mRNA-1:cds;Parent=Msa0599070-mRNA-1 |
| chr4_2 | CDS | 37126166 | 37126271 | 37126166 | ID=Msa0599070-mRNA-1:cds;Parent=Msa0599070-mRNA-1 |
| chr4_2 | CDS | 37125800 | 37125972 | 37125800 | ID=Msa0599070-mRNA-1:cds;Parent=Msa0599070-mRNA-1 |
| chr4_2 | CDS | 37125550 | 37125710 | 37125550 | ID=Msa0599070-mRNA-1:cds;Parent=Msa0599070-mRNA-1 |
| chr4_2 | CDS | 37124717 | 37124975 | 37124717 | ID=Msa0599070-mRNA-1:cds;Parent=Msa0599070-mRNA-1 |
| chr4_2 | CDS | 37124512 | 37124619 | 37124512 | ID=Msa0599070-mRNA-1:cds;Parent=Msa0599070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
