Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0680830 | XP_003606194.2 | 92.846 | 615 | 40 | 1 | 1 | 611 | 1 | 615 | 0.0 | 1167 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0680830 | sp|B8BHF1|GLO15_ORYSI | 54.120 | 619 | 271 | 6 | 1 | 607 | 1 | 618 | 0.0 | 699 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0680830 | G7JJQ1 | 92.846 | 615 | 40 | 1 | 1 | 611 | 1 | 615 | 0.0 | 1167 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0641900 | Msa0680830 | 0.820164 | 7.925179e-53 | -8.615850e-47 |
| Msa0545790 | Msa0680830 | 0.802639 | 5.099663e-49 | -8.615850e-47 |
| Msa0584130 | Msa0680830 | 0.866317 | 3.115183e-65 | -8.615850e-47 |
| Msa0601650 | Msa0680830 | 0.811504 | 6.773538e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0680830 | MtrunA17_Chr4g0026761 | 88.130 | 615 | 69 | 1 | 1 | 611 | 1 | 615 | 0.0 | 1118 |
| Msa0680830 | MtrunA17_Chr7g0256371 | 80.882 | 612 | 111 | 2 | 1 | 608 | 10 | 619 | 0.0 | 1016 |
| Msa0680830 | MtrunA17_Chr7g0256411 | 80.587 | 613 | 114 | 2 | 1 | 609 | 32 | 643 | 0.0 | 1014 |
| Msa0680830 | MtrunA17_Chr7g0256391 | 80.065 | 612 | 118 | 1 | 1 | 608 | 1 | 612 | 0.0 | 1003 |
| Msa0680830 | MtrunA17_Chr4g0026811 | 93.157 | 453 | 27 | 1 | 20 | 468 | 6 | 458 | 0.0 | 847 |
| Msa0680830 | MtrunA17_Chr8g0337081 | 63.533 | 617 | 217 | 3 | 1 | 609 | 1 | 617 | 0.0 | 769 |
| Msa0680830 | MtrunA17_Chr8g0337101 | 58.481 | 619 | 248 | 4 | 1 | 610 | 37 | 655 | 0.0 | 753 |
| Msa0680830 | MtrunA17_Chr4g0073231 | 32.154 | 622 | 398 | 8 | 8 | 607 | 5 | 624 | 3.81e-109 | 341 |
| Msa0680830 | MtrunA17_Chr2g0305431 | 33.216 | 283 | 181 | 2 | 8 | 282 | 5 | 287 | 9.50e-55 | 188 |
| Msa0680830 | MtrunA17_Chr4g0026821 | 89.011 | 91 | 10 | 0 | 467 | 557 | 3 | 93 | 5.94e-53 | 176 |
| Msa0680830 | MtrunA17_Chr4g0026831 | 93.617 | 47 | 3 | 0 | 565 | 611 | 1 | 47 | 1.10e-25 | 99.8 |
| Msa0680830 | MtrunA17_Chr2g0305451 | 30.093 | 216 | 143 | 3 | 400 | 607 | 2 | 217 | 1.13e-23 | 99.8 |
| Msa0680830 | MtrunA17_Chr2g0305441 | 27.660 | 141 | 98 | 1 | 264 | 404 | 26 | 162 | 1.61e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0680830 | AT1G02205.2 | 54.167 | 624 | 273 | 4 | 1 | 611 | 1 | 624 | 0.0 | 699 |
| Msa0680830 | AT1G02205.3 | 53.736 | 629 | 273 | 4 | 1 | 611 | 1 | 629 | 0.0 | 696 |
| Msa0680830 | AT1G02205.4 | 53.719 | 605 | 267 | 5 | 20 | 611 | 21 | 625 | 0.0 | 666 |
| Msa0680830 | AT1G02190.1 | 53.686 | 624 | 270 | 9 | 1 | 607 | 1 | 622 | 0.0 | 662 |
| Msa0680830 | AT2G37700.3 | 53.548 | 620 | 278 | 5 | 1 | 611 | 1 | 619 | 0.0 | 656 |
| Msa0680830 | AT1G02190.2 | 53.365 | 624 | 268 | 10 | 1 | 607 | 1 | 618 | 0.0 | 653 |
| Msa0680830 | AT2G37700.1 | 53.150 | 619 | 273 | 5 | 1 | 611 | 1 | 610 | 0.0 | 650 |
| Msa0680830 | AT2G37700.4 | 50.162 | 616 | 268 | 6 | 1 | 611 | 1 | 582 | 0.0 | 592 |
| Msa0680830 | AT2G37700.2 | 55.180 | 473 | 206 | 3 | 1 | 468 | 1 | 472 | 1.62e-177 | 512 |
| Msa0680830 | AT1G02205.1 | 49.669 | 453 | 218 | 3 | 169 | 611 | 8 | 460 | 1.58e-160 | 468 |
| Msa0680830 | AT1G02205.5 | 47.884 | 378 | 191 | 2 | 240 | 611 | 8 | 385 | 2.09e-129 | 385 |
| Msa0680830 | AT5G57800.1 | 32.419 | 620 | 394 | 9 | 8 | 603 | 5 | 623 | 7.21e-105 | 330 |
Find 127 sgRNAs with CRISPR-Local
Find 484 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTATATATGACTACATTTA+TGG | 0.133350 | 4_4:+40458241 | Msa0680830:CDS |
| CATACTTGTGTTTGAAATCT+TGG | 0.227875 | 4_4:-40458547 | None:intergenic |
| TTTGGAGCAAAATGAGAAAA+AGG | 0.240600 | 4_4:-40462289 | None:intergenic |
| CCATCTTTCAACTACGTTTA+GGG | 0.256307 | 4_4:+40458365 | Msa0680830:CDS |
| AAGTAGGAGAAGAGTTTCTT+AGG | 0.260653 | 4_4:-40457882 | None:intergenic |
| CCATACTTGTCTGATTAGTT+TGG | 0.266216 | 4_4:-40464157 | None:intergenic |
| AACATTCTGACGAATATATA+AGG | 0.292856 | 4_4:-40456759 | None:intergenic |
| TACTTGACATTGAGAAAGTA+TGG | 0.295231 | 4_4:+40464095 | Msa0680830:CDS |
| ATTAGTGCATCTATTTGGTT+AGG | 0.299106 | 4_4:+40464417 | Msa0680830:three_prime_UTR |
| TCCATCTTTCAACTACGTTT+AGG | 0.302432 | 4_4:+40458364 | Msa0680830:CDS |
| AGCATAGAGCACATTGTAAA+AGG | 0.309097 | 4_4:-40458445 | None:intergenic |
| CAAGCACTCATGACTCTTCT+TGG | 0.310873 | 4_4:-40464010 | None:intergenic |
| TGTCGACTTGGTCGAATTCC+AGG | 0.311368 | 4_4:-40456854 | None:intergenic |
| ACTGCATAAAGCATTAATAA+TGG | 0.315279 | 4_4:-40460201 | None:intergenic |
| AATAAAGTGAAAACAACTTA+TGG | 0.321677 | 4_4:+40464297 | Msa0680830:three_prime_UTR |
| ACTCAGGGGCAAGTTTAATA+AGG | 0.340636 | 4_4:+40460169 | Msa0680830:CDS |
| AGCACTTGATTCGTCCCTTT+GGG | 0.357623 | 4_4:-40460146 | None:intergenic |
| CAAGTTTAATAAGGTTGCTT+TGG | 0.369770 | 4_4:+40460178 | Msa0680830:CDS |
| CTCATCACAAATTCATACTA+TGG | 0.373931 | 4_4:+40455905 | None:intergenic |
| TAGCACTTGATTCGTCCCTT+TGG | 0.380060 | 4_4:-40460147 | None:intergenic |
| CCAAACTAATCAGACAAGTA+TGG | 0.380749 | 4_4:+40464157 | Msa0680830:exon |
| TGGAGTAAAGGTGATAAGTC+TGG | 0.381430 | 4_4:+40458959 | Msa0680830:CDS |
| AAGTCGACAGAGAAACTAAT+TGG | 0.387790 | 4_4:+40456868 | Msa0680830:CDS |
| ATGAGTGCTTGGCGCATTGC+TGG | 0.389012 | 4_4:+40464022 | Msa0680830:CDS |
| GTGAACATCCCATCTTTCTA+AGG | 0.392425 | 4_4:-40464056 | None:intergenic |
| GTTTCCAAGGCCAGTTTGTA+AGG | 0.398023 | 4_4:-40455944 | None:intergenic |
| TTAACCTTTGGAGTATTGAT+TGG | 0.399525 | 4_4:-40460645 | None:intergenic |
| TCGTTATTAGTGCATCTATT+TGG | 0.400609 | 4_4:+40464412 | Msa0680830:three_prime_UTR |
| CGCTGCATCACACAAAATTT+AGG | 0.401705 | 4_4:+40458197 | Msa0680830:CDS |
| TCTGTAGGACTTATCATTGA+TGG | 0.409984 | 4_4:-40462346 | None:intergenic |
| GAAACCTCTTGGGAGCTTCA+AGG | 0.410003 | 4_4:+40455962 | Msa0680830:CDS |
| TGAACAATGTTGTCGACATT+GGG | 0.411203 | 4_4:-40457770 | None:intergenic |
| CCATAAATGTAGTCATATAT+AGG | 0.417569 | 4_4:-40458241 | None:intergenic |
| TGTACGTGAGATACTTCAAT+TGG | 0.428938 | 4_4:-40457908 | None:intergenic |
| CAGTGGAGTTCTTATACTAT+TGG | 0.435690 | 4_4:+40457347 | Msa0680830:CDS |
| GCATCCTTACAAACTGGCCT+TGG | 0.438647 | 4_4:+40455940 | Msa0680830:CDS |
| CTGAAGATTAAAGTTGTAGA+TGG | 0.439460 | 4_4:+40460086 | Msa0680830:CDS |
| GTTTGTAAGGATGCCCGCTT+TGG | 0.446245 | 4_4:-40455931 | None:intergenic |
| AACTGGCCTTGGAAACCTCT+TGG | 0.451153 | 4_4:+40455951 | Msa0680830:CDS |
| ATGCTTATGACTTGGATTAG+TGG | 0.454844 | 4_4:+40458463 | Msa0680830:CDS |
| TATGGTTAGTTGGAGATGAA+TGG | 0.456856 | 4_4:+40462221 | Msa0680830:CDS |
| TGTGTTAAGTGCACCACATC+TGG | 0.460275 | 4_4:-40458325 | None:intergenic |
| ATGAACAATGTTGTCGACAT+TGG | 0.460935 | 4_4:-40457771 | None:intergenic |
| GGAATATGAGATAGTATGTT+GGG | 0.461460 | 4_4:-40456737 | None:intergenic |
| CACCGTGTCCGATGGAAGCT+TGG | 0.461992 | 4_4:+40460614 | Msa0680830:CDS |
| TATGCCAACATCTCGGCAAA+TGG | 0.462118 | 4_4:-40457729 | None:intergenic |
| GATTAGTTTGGAATCTTAAG+AGG | 0.464881 | 4_4:-40464145 | None:intergenic |
| GGACGAATCAAGTGCTACTC+AGG | 0.464937 | 4_4:+40460153 | Msa0680830:CDS |
| GAATGTTGCACAATCAGATA+TGG | 0.466050 | 4_4:+40456775 | Msa0680830:CDS |
| AAGCGGGCATCCTTACAAAC+TGG | 0.468776 | 4_4:+40455934 | Msa0680830:CDS |
| ACTGGCCTTGGAAACCTCTT+GGG | 0.470484 | 4_4:+40455952 | Msa0680830:CDS |
| ACATTCTGACGAATATATAA+GGG | 0.475209 | 4_4:-40456758 | None:intergenic |
| GGCTGAGATAAGTGGAGTAA+AGG | 0.476586 | 4_4:+40458947 | Msa0680830:CDS |
| CATACTATGGCTTCCAAAGC+GGG | 0.482595 | 4_4:+40455918 | Msa0680830:exon |
| TCACGCTACCAAACTGCTAA+AGG | 0.482745 | 4_4:+40456807 | Msa0680830:CDS |
| CCCTAAACGTAGTTGAAAGA+TGG | 0.485223 | 4_4:-40458365 | None:intergenic |
| ACCACATCTGGTGACTCCTC+TGG | 0.485332 | 4_4:-40458313 | None:intergenic |
| ATCTAACAGATATGGTTAGT+TGG | 0.485488 | 4_4:+40462211 | Msa0680830:intron |
| TTAGTGCATCTATTTGGTTA+GGG | 0.491357 | 4_4:+40464418 | Msa0680830:three_prime_UTR |
| TAATTCATGCCTTAGAAAGA+TGG | 0.494662 | 4_4:+40464047 | Msa0680830:CDS |
| AAGATCTCAAGCTGCAGTGT+TGG | 0.498853 | 4_4:+40458518 | Msa0680830:CDS |
| ATGGTTAGTTGGAGATGAAT+GGG | 0.501106 | 4_4:+40462222 | Msa0680830:CDS |
| AGTTTGGAATCTTAAGAGGT+AGG | 0.503572 | 4_4:-40464141 | None:intergenic |
| GGGAATATGAGATAGTATGT+TGG | 0.504673 | 4_4:-40456738 | None:intergenic |
| TAAAAGGCCACATTAAATTG+AGG | 0.505608 | 4_4:-40458429 | None:intergenic |
| TCGTCTGTGGCTGCACTGTA+TGG | 0.507693 | 4_4:+40457801 | Msa0680830:CDS |
| AAGAATTGTTGACAAAGGCC+TGG | 0.510050 | 4_4:+40456836 | Msa0680830:CDS |
| CTTACAGCTATCTTGCATGC+TGG | 0.513705 | 4_4:+40457322 | Msa0680830:CDS |
| CAAGAAGAGTCATGAGTGCT+TGG | 0.516934 | 4_4:+40464011 | Msa0680830:CDS |
| ACTGCGCACTTTATATTGAA+AGG | 0.517488 | 4_4:+40460054 | Msa0680830:CDS |
| TACCAACCTCACACGAATGC+AGG | 0.521065 | 4_4:-40462378 | None:intergenic |
| GCTCCAAAGAAAATGCGAAA+AGG | 0.521963 | 4_4:+40462304 | Msa0680830:CDS |
| ACATCCATTTGCCGAGATGT+TGG | 0.524133 | 4_4:+40457725 | Msa0680830:CDS |
| AGCTGAAAGAGCTTGAACGA+AGG | 0.524659 | 4_4:+40460589 | Msa0680830:CDS |
| AATTCATGCCTTAGAAAGAT+GGG | 0.527363 | 4_4:+40464048 | Msa0680830:CDS |
| TGTTCTCCACCATGGTAAGT+TGG | 0.530657 | 4_4:-40457287 | None:intergenic |
| AATTAGTTTCTCTGTCGACT+TGG | 0.531419 | 4_4:-40456866 | None:intergenic |
| CTATGGCTGCCAACTTACCA+TGG | 0.536219 | 4_4:+40457278 | Msa0680830:CDS |
| GTACGTGAGATACTTCAATT+GGG | 0.538625 | 4_4:-40457907 | None:intergenic |
| TTATCATTGATGGTGTATAG+TGG | 0.546801 | 4_4:-40462336 | None:intergenic |
| TTGAAGAATGATGGTGAGAA+TGG | 0.550303 | 4_4:-40457411 | None:intergenic |
| CGAAGGGTCACCGTGTCCGA+TGG | 0.553743 | 4_4:+40460606 | Msa0680830:CDS |
| TGCTTAACAACATTCCCAAA+GGG | 0.556459 | 4_4:+40460132 | Msa0680830:CDS |
| GGAGTAAAGGTGATAAGTCT+GGG | 0.563852 | 4_4:+40458960 | Msa0680830:CDS |
| GCTGAAAGAGCTTGAACGAA+GGG | 0.563864 | 4_4:+40460590 | Msa0680830:CDS |
| GATTGAAGAGACAATAATGA+AGG | 0.565004 | 4_4:+40458926 | Msa0680830:CDS |
| CAATAGTATAAGAACTCCAC+TGG | 0.579949 | 4_4:-40457346 | None:intergenic |
| TGTGCTCTATGCTTATGACT+TGG | 0.580460 | 4_4:+40458455 | Msa0680830:CDS |
| AGCTTCATATGTAGCATCTG+AGG | 0.581755 | 4_4:-40458278 | None:intergenic |
| ATAGTCACTGAGCCTATCAC+TGG | 0.582275 | 4_4:+40457433 | Msa0680830:CDS |
| ACCAGAGGAGTCACCAGATG+TGG | 0.582602 | 4_4:+40458312 | Msa0680830:CDS |
| AAGCTCCCAAGAGGTTTCCA+AGG | 0.582916 | 4_4:-40455957 | None:intergenic |
| AATAAGCCAAATATTCGCCA+TGG | 0.587696 | 4_4:+40464472 | Msa0680830:three_prime_UTR |
| CATGGTAAGTTGGCAGCCAT+AGG | 0.589495 | 4_4:-40457277 | None:intergenic |
| TGGCTTATTGATATAAAACA+TGG | 0.590486 | 4_4:-40464458 | None:intergenic |
| AGCCAAGCTTCCATCGGACA+CGG | 0.592355 | 4_4:-40460616 | None:intergenic |
| AGTTCGTGATTCTAAGCCCG+TGG | 0.593319 | 4_4:+40456673 | Msa0680830:intron |
| TGTGAAATATGCCAACATCT+CGG | 0.595831 | 4_4:-40457736 | None:intergenic |
| CAGTGACTATTGAAGAATGA+TGG | 0.597929 | 4_4:-40457420 | None:intergenic |
| GAGCAAATGCAAGCATCAGA+AGG | 0.600767 | 4_4:+40462253 | Msa0680830:CDS |
| ATATGCTATGAGCAATCCAC+GGG | 0.601636 | 4_4:-40456689 | None:intergenic |
| ATAATGAAGGCTGAGATAAG+TGG | 0.602791 | 4_4:+40458939 | Msa0680830:CDS |
| GACGAATCAAGTGCTACTCA+GGG | 0.603036 | 4_4:+40460154 | Msa0680830:CDS |
| TGCAGGTTTATGACTTCTGT+AGG | 0.610412 | 4_4:-40462361 | None:intergenic |
| TATGGTACCTCAATTTAATG+TGG | 0.612302 | 4_4:+40458422 | Msa0680830:CDS |
| AAAAGAAGAATTGTTGACAA+AGG | 0.612342 | 4_4:+40456831 | Msa0680830:CDS |
| ATCACCAATCAATACTCCAA+AGG | 0.614842 | 4_4:+40460641 | Msa0680830:CDS |
| ACTTGACATTGAGAAAGTAT+GGG | 0.615272 | 4_4:+40464096 | Msa0680830:CDS |
| TTACCATGGTGGAGAACAGA+TGG | 0.618214 | 4_4:+40457292 | Msa0680830:CDS |
| TATCTTGCATGCTGGACCAG+TGG | 0.620521 | 4_4:+40457330 | Msa0680830:CDS |
| TGATAGAGCCAAGCTTCCAT+CGG | 0.621987 | 4_4:-40460622 | None:intergenic |
| TCTTAAGAGGTAGGTAACCA+TGG | 0.633958 | 4_4:-40464132 | None:intergenic |
| CATAAACCTGCATTCGTGTG+AGG | 0.635395 | 4_4:+40462372 | Msa0680830:CDS |
| GTGCTTAACAACATTCCCAA+AGG | 0.636164 | 4_4:+40460131 | Msa0680830:CDS |
| TATATGCTATGAGCAATCCA+CGG | 0.638673 | 4_4:-40456690 | None:intergenic |
| TCATACTATGGCTTCCAAAG+CGG | 0.640747 | 4_4:+40455917 | Msa0680830:exon |
| TGACTACATTTATGGTACTG+TGG | 0.648424 | 4_4:+40458249 | Msa0680830:CDS |
| AGATGGGATGTTCACGAGTG+TGG | 0.654534 | 4_4:+40464064 | Msa0680830:CDS |
| TACGTGAGATACTTCAATTG+GGG | 0.660758 | 4_4:-40457906 | None:intergenic |
| ACAACCTTGAAGCTCCCAAG+AGG | 0.664103 | 4_4:-40455966 | None:intergenic |
| TGGGAAGCAAGTATTCGCCA+TGG | 0.674366 | 4_4:+40464115 | Msa0680830:CDS |
| ACACCATCTGTTCTCCACCA+TGG | 0.679185 | 4_4:-40457295 | None:intergenic |
| TGGCTGCCAACTTACCATGG+TGG | 0.698674 | 4_4:+40457281 | Msa0680830:CDS |
| ACGTGAGATACTTCAATTGG+GGG | 0.715491 | 4_4:-40457905 | None:intergenic |
| AGCTTGTTCGAAGAGACCAG+AGG | 0.723440 | 4_4:+40458297 | Msa0680830:CDS |
| ACGAATCAAGTGCTACTCAG+GGG | 0.724211 | 4_4:+40460155 | Msa0680830:CDS |
| ATGGTGGAGAACAGATGGTG+TGG | 0.733193 | 4_4:+40457297 | Msa0680830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+TGG | + | chr4_4:40458617-40458636 | Msa0680830:intron | 0.0% |
| !! | ATATATATATATATATATAT+GGG | + | chr4_4:40458618-40458637 | Msa0680830:intron | 0.0% |
| !! | ATATATATATATATATATAT+GGG | - | chr4_4:40458618-40458637 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+TGG | - | chr4_4:40458617-40458636 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+AGG | + | chr4_4:40458617-40458636 | Msa0680830:intron | 0.0% |
| !! | ATATATATATATATATATAA+GGG | + | chr4_4:40461165-40461184 | Msa0680830:intron | 0.0% |
| !! | ATATATATATATATATATAT+GGG | - | chr4_4:40458618-40458637 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+TGG | - | chr4_4:40458617-40458636 | None:intergenic | 0.0% |
| !! | ATATATATATATATATATAT+GGG | - | chr4_4:40458618-40458637 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+TGG | - | chr4_4:40458617-40458636 | None:intergenic | 0.0% |
| !! | AAAAAATAATAATTTAAATA+TGG | - | chr4_4:40462644-40462663 | None:intergenic | 0.0% |
| !! | TAAAAAATATAATTTACCTA+CGG | + | chr4_4:40456118-40456137 | Msa0680830:intron | 10.0% |
| !!! | ATAAATTACAATAATTTTTC+AGG | + | chr4_4:40456462-40456481 | Msa0680830:intron | 10.0% |
| !! | TTGCATTTATTTAATTAATT+AGG | - | chr4_4:40456932-40456951 | None:intergenic | 10.0% |
| !! | AATAAATGCAATATAATTAA+TGG | + | chr4_4:40456941-40456960 | Msa0680830:intron | 10.0% |
| !! | ATAAATGCAATATAATTAAT+GGG | + | chr4_4:40456942-40456961 | Msa0680830:intron | 10.0% |
| !!! | TAATTTTTTATGATTTGTTA+TGG | + | chr4_4:40457025-40457044 | Msa0680830:intron | 10.0% |
| !! | AAATAAAAAAAATTATTGGA+GGG | - | chr4_4:40459364-40459383 | None:intergenic | 10.0% |
| !!! | ATTTTTCTTAATAGAATTTT+TGG | - | chr4_4:40460430-40460449 | None:intergenic | 10.0% |
| !! | ATAAAAAAAAATGTTTCTTT+AGG | - | chr4_4:40460817-40460836 | None:intergenic | 10.0% |
| !! | ATATATATATATATATATGG+GGG | - | chr4_4:40458638-40458657 | None:intergenic | 10.0% |
| !!! | TTTTTTTTGAAAAATCTATT+TGG | + | chr4_4:40462744-40462763 | Msa0680830:intron | 10.0% |
| !! | TTAAAAGTTTATAAGTTATT+AGG | - | chr4_4:40462862-40462881 | None:intergenic | 10.0% |
| !!! | ACTAAATCAAATTTAAAATT+TGG | - | chr4_4:40462904-40462923 | None:intergenic | 10.0% |
| !! | ATTGAATTATTTAAATCTTT+CGG | - | chr4_4:40463664-40463683 | None:intergenic | 10.0% |
| !! | GATTTAAATAATTCAATTAT+AGG | + | chr4_4:40463667-40463686 | Msa0680830:intron | 10.0% |
| !!! | TTGAATTATTTAAATTTTTC+GGG | - | chr4_4:40463777-40463796 | None:intergenic | 10.0% |
| !! | TAATAAAGAGTTATATGATT+TGG | - | chr4_4:40456199-40456218 | None:intergenic | 15.0% |
| !!! | AAATTTCCTATTTTTTTTCT+AGG | - | chr4_4:40456493-40456512 | None:intergenic | 15.0% |
| !! | AACTATACTAATCAATTATA+AGG | - | chr4_4:40456561-40456580 | None:intergenic | 15.0% |
| !! | TAAAGAGAAAATTGAAATTT+AGG | - | chr4_4:40456896-40456915 | None:intergenic | 15.0% |
| !!! | ACTGATTTATTTATCAATTA+AGG | + | chr4_4:40457066-40457085 | Msa0680830:intron | 15.0% |
| !! | GACAAAATAAAATATAACTA+AGG | - | chr4_4:40458046-40458065 | None:intergenic | 15.0% |
| !! | GAAATAAAAAAAATTATTGG+AGG | - | chr4_4:40459365-40459384 | None:intergenic | 15.0% |
| !! | TGTATCATTAAAATTCAAAT+TGG | + | chr4_4:40459982-40460001 | Msa0680830:intron | 15.0% |
| !! | GTATCATTAAAATTCAAATT+GGG | + | chr4_4:40459983-40460002 | Msa0680830:intron | 15.0% |
| !! | TAAATACATAAAATTTGCAA+AGG | - | chr4_4:40460792-40460811 | None:intergenic | 15.0% |
| !!! | TTATTTAAATTTGAAATCAG+AGG | + | chr4_4:40460929-40460948 | Msa0680830:intron | 15.0% |
| !!! | TATTTAAATTTGAAATCAGA+GGG | + | chr4_4:40460930-40460949 | Msa0680830:intron | 15.0% |
| !! | TGTTTATAATAGAAAAACAT+GGG | - | chr4_4:40461267-40461286 | None:intergenic | 15.0% |
| !! | TTGTTTATAATAGAAAAACA+TGG | - | chr4_4:40461268-40461287 | None:intergenic | 15.0% |
| !! | TGTTTATAATAGAAAAACAT+GGG | - | chr4_4:40461267-40461286 | None:intergenic | 15.0% |
| !! | TTGTTTATAATAGAAAAACA+TGG | - | chr4_4:40461268-40461287 | None:intergenic | 15.0% |
| !! | TGTTTATAATAGAAAAACAT+GGG | - | chr4_4:40461267-40461286 | None:intergenic | 15.0% |
| !! | TTGTTTATAATAGAAAAACA+TGG | - | chr4_4:40461268-40461287 | None:intergenic | 15.0% |
| !!! | ATTAAATTTTTGACTTGATT+TGG | + | chr4_4:40462941-40462960 | Msa0680830:intron | 15.0% |
| !!! | TTAAATTTTTGACTTGATTT+GGG | + | chr4_4:40462942-40462961 | Msa0680830:intron | 15.0% |
| !!! | TTTTTTACTGTTTCAAAAAA+AGG | + | chr4_4:40463002-40463021 | Msa0680830:intron | 15.0% |
| !!! | TCGTTGATTTTTTAAATTTT+GGG | - | chr4_4:40463247-40463266 | None:intergenic | 15.0% |
| !!! | ATCGTTGATTTTTTAAATTT+TGG | - | chr4_4:40463248-40463267 | None:intergenic | 15.0% |
| !!! | TTTTTTACTGTTTCAAAAAA+AGG | + | chr4_4:40463002-40463021 | Msa0680830:intron | 15.0% |
| !!! | TCGTTGATTTTTTAAATTTT+GGG | - | chr4_4:40463247-40463266 | None:intergenic | 15.0% |
| !!! | ATCGTTGATTTTTTAAATTT+TGG | - | chr4_4:40463248-40463267 | None:intergenic | 15.0% |
| !! | TTTAAAAAATCAACGATTAT+AGG | + | chr4_4:40463553-40463572 | Msa0680830:intron | 15.0% |
| !! | TTGAATTATTTAAATCTTTC+GGG | - | chr4_4:40463663-40463682 | None:intergenic | 15.0% |
| !!! | TTATTTTCAGTTTTTTCTAG+TGG | - | chr4_4:40456101-40456120 | None:intergenic | 20.0% |
| !!! | GCTATTAATTTTTCTTTTGT+TGG | + | chr4_4:40456261-40456280 | Msa0680830:intron | 20.0% |
| !!! | ATCTTTTTCTATCAATAATG+TGG | - | chr4_4:40456385-40456404 | None:intergenic | 20.0% |
| !! | TCTTGTCAAAAAGAATTATA+AGG | - | chr4_4:40456532-40456551 | None:intergenic | 20.0% |
| !!! | ATAGCATATACTCTTTTATA+TGG | + | chr4_4:40456703-40456722 | Msa0680830:CDS | 20.0% |
| !!! | TAGCATATACTCTTTTATAT+GGG | + | chr4_4:40456704-40456723 | Msa0680830:CDS | 20.0% |
| !! | CAATATAATTAATGGGAATT+AGG | + | chr4_4:40456949-40456968 | Msa0680830:intron | 20.0% |
| !!! | TTTTTACACAATATTTCCTA+TGG | + | chr4_4:40457261-40457280 | Msa0680830:CDS | 20.0% |
| !! | TCATATTTCTTTGTACATTT+AGG | + | chr4_4:40457606-40457625 | Msa0680830:intron | 20.0% |
| !!! | ATCGATTTTATGAACAATAT+GGG | + | chr4_4:40457837-40457856 | Msa0680830:CDS | 20.0% |
| !! | TATCAATGATTTATCACATA+TGG | - | chr4_4:40457975-40457994 | None:intergenic | 20.0% |
| !!! | TCTAAAGTTTGAAAATTGAT+GGG | - | chr4_4:40458585-40458604 | None:intergenic | 20.0% |
| !!! | ATCTAAAGTTTGAAAATTGA+TGG | - | chr4_4:40458586-40458605 | None:intergenic | 20.0% |
| !!! | TTTTGTAGTATTTCTCAAAA+AGG | + | chr4_4:40458880-40458899 | Msa0680830:intron | 20.0% |
| !!! | TAAAACAGAAAAAAGTACAA+CGG | - | chr4_4:40459013-40459032 | None:intergenic | 20.0% |
| !!! | TTGTACTTTTTTCTGTTTTA+TGG | + | chr4_4:40459013-40459032 | Msa0680830:intron | 20.0% |
| !!! | TTTTTTCTGTTTTATGGATT+AGG | + | chr4_4:40459019-40459038 | Msa0680830:intron | 20.0% |
| !! | AAAGCATATGAAAAATTGAA+CGG | - | chr4_4:40459082-40459101 | None:intergenic | 20.0% |
| !! | AAAATTTCTCTCAAATAGAA+TGG | - | chr4_4:40459223-40459242 | None:intergenic | 20.0% |
| !! | GAATATGATTTCTTATTACT+TGG | - | chr4_4:40459533-40459552 | None:intergenic | 20.0% |
| !!! | CAATTTTAGCTTACAATTAA+AGG | - | chr4_4:40460268-40460287 | None:intergenic | 20.0% |
| !! | TCATTGAAGACATTAAATTA+AGG | - | chr4_4:40460335-40460354 | None:intergenic | 20.0% |
| !! | AACAATCTAACTGAATTAAA+TGG | + | chr4_4:40460377-40460396 | Msa0680830:intron | 20.0% |
| !! | ACAATCTAACTGAATTAAAT+GGG | + | chr4_4:40460378-40460397 | Msa0680830:intron | 20.0% |
| !!! | TACATTAAACATTTTGTACT+TGG | - | chr4_4:40460497-40460516 | None:intergenic | 20.0% |
| !! | TAATTGAGTAAATTGCAAAT+AGG | + | chr4_4:40460545-40460564 | Msa0680830:intron | 20.0% |
| !! | AAACACAAAAACAAGAAAAT+GGG | - | chr4_4:40460994-40461013 | None:intergenic | 20.0% |
| !! | AAAACACAAAAACAAGAAAA+TGG | - | chr4_4:40460995-40461014 | None:intergenic | 20.0% |
| !! | TAACAAAAATACATTCGAAA+TGG | - | chr4_4:40461038-40461057 | None:intergenic | 20.0% |
| !! | TAAAGTTTAATAGAGACAAA+AGG | + | chr4_4:40461330-40461349 | Msa0680830:intron | 20.0% |
| !! | AAAGTTTAATAGAGACAAAA+GGG | + | chr4_4:40461331-40461350 | Msa0680830:intron | 20.0% |
| !! | TAAAGTTTAATAGAGACAAA+AGG | + | chr4_4:40461330-40461349 | Msa0680830:intron | 20.0% |
| !! | AAAGTTTAATAGAGACAAAA+GGG | + | chr4_4:40461331-40461350 | Msa0680830:intron | 20.0% |
| !! | TAAAGTTTAATAGAGACAAA+AGG | + | chr4_4:40461330-40461349 | Msa0680830:intron | 20.0% |
| !! | AAAGTTTAATAGAGACAAAA+GGG | + | chr4_4:40461331-40461350 | Msa0680830:intron | 20.0% |
| !! | CATTATAAATCTAACAGATA+TGG | + | chr4_4:40462203-40462222 | Msa0680830:intron | 20.0% |
| !! | TACTGCTCTATAATTTATAA+AGG | + | chr4_4:40462432-40462451 | Msa0680830:intron | 20.0% |
| !!! | ATTCCATTTGTTTTTTGTTA+GGG | - | chr4_4:40462541-40462560 | None:intergenic | 20.0% |
| !!! | TATTCCATTTGTTTTTTGTT+AGG | - | chr4_4:40462542-40462561 | None:intergenic | 20.0% |
| !!! | TGAAGTTTAATTTTGCAATA+TGG | + | chr4_4:40462599-40462618 | Msa0680830:intron | 20.0% |
| !!! | GAAGTTTAATTTTGCAATAT+GGG | + | chr4_4:40462600-40462619 | Msa0680830:intron | 20.0% |
| !!! | TAAATTTTTGACTTGATTTG+GGG | + | chr4_4:40462943-40462962 | Msa0680830:intron | 20.0% |
| !! | TGAAATATATCAAAATTCAG+TGG | + | chr4_4:40463183-40463202 | Msa0680830:intron | 20.0% |
| !!! | GTTGATTTTTTAAATTTTGG+GGG | - | chr4_4:40463245-40463264 | None:intergenic | 20.0% |
| !!! | CGTTGATTTTTTAAATTTTG+GGG | - | chr4_4:40463246-40463265 | None:intergenic | 20.0% |
| !! | TGAAATATATCAAAATTCAG+TGG | + | chr4_4:40463183-40463202 | Msa0680830:intron | 20.0% |
| !!! | GTTGATTTTTTAAATTTTGG+GGG | - | chr4_4:40463245-40463264 | None:intergenic | 20.0% |
| !!! | CGTTGATTTTTTAAATTTTG+GGG | - | chr4_4:40463246-40463265 | None:intergenic | 20.0% |
| !!! | GATTTTATACAATTTTGTGT+CGG | + | chr4_4:40463588-40463607 | Msa0680830:intron | 20.0% |
| !!! | ATTATTTAAATTTTTCGGGT+GGG | - | chr4_4:40463773-40463792 | None:intergenic | 20.0% |
| !!! | AATTATTTAAATTTTTCGGG+TGG | - | chr4_4:40463774-40463793 | None:intergenic | 20.0% |
| !!! | TGCTTTAAACAATTTTTCAA+CGG | + | chr4_4:40463816-40463835 | Msa0680830:intron | 20.0% |
| !!! | TTTTCAACGGTTAAATTTAA+TGG | + | chr4_4:40463829-40463848 | Msa0680830:intron | 20.0% |
| !! | TGTCAAAATTAATGTCTTAT+TGG | + | chr4_4:40463884-40463903 | Msa0680830:intron | 20.0% |
| !!! | CTTATATTTTAAGTGAAAAC+AGG | - | chr4_4:40464243-40464262 | None:intergenic | 20.0% |
| !! | AATAAAGTGAAAACAACTTA+TGG | + | chr4_4:40464297-40464316 | Msa0680830:three_prime_UTR | 20.0% |
| !! | TGGAAATTAATTTGAGGAAA+GGG | - | chr4_4:40456081-40456100 | None:intergenic | 25.0% |
| !! | TTCTAGTGGAAATTAATTTG+AGG | - | chr4_4:40456087-40456106 | None:intergenic | 25.0% |
| !! | TATAGGTGTTGTAGATATAA+TGG | + | chr4_4:40456146-40456165 | Msa0680830:intron | 25.0% |
| !! | ATAGGTGTTGTAGATATAAT+GGG | + | chr4_4:40456147-40456166 | Msa0680830:intron | 25.0% |
| ! | AACTCTTTATTAGATCTCAT+TGG | + | chr4_4:40456207-40456226 | Msa0680830:intron | 25.0% |
| ! | GAATAGCCTAGAAAAAAAAT+AGG | + | chr4_4:40456484-40456503 | Msa0680830:intron | 25.0% |
| ! | ACATTCTGACGAATATATAA+GGG | - | chr4_4:40456761-40456780 | None:intergenic | 25.0% |
| ! | AACATTCTGACGAATATATA+AGG | - | chr4_4:40456762-40456781 | None:intergenic | 25.0% |
| ! | AAAAGAAGAATTGTTGACAA+AGG | + | chr4_4:40456831-40456850 | Msa0680830:CDS | 25.0% |
| !!! | CATCGATTTTATGAACAATA+TGG | + | chr4_4:40457836-40457855 | Msa0680830:CDS | 25.0% |
| ! | CAAAATACGCAATAAAGAAA+TGG | - | chr4_4:40458108-40458127 | None:intergenic | 25.0% |
| !!! | TTCTTTATTGCGTATTTTGA+TGG | + | chr4_4:40458109-40458128 | Msa0680830:intron | 25.0% |
| !! | AAAGTGTTTCATACAAAGTT+TGG | + | chr4_4:40458158-40458177 | Msa0680830:intron | 25.0% |
| ! | CCATAAATGTAGTCATATAT+AGG | - | chr4_4:40458244-40458263 | None:intergenic | 25.0% |
| ! | CCTATATATGACTACATTTA+TGG | + | chr4_4:40458241-40458260 | Msa0680830:CDS | 25.0% |
| ! | GCAAAGTTATAACTAAAAAG+TGG | - | chr4_4:40458723-40458742 | None:intergenic | 25.0% |
| !! | AAAACAGAAAAAAGTACAAC+GGG | - | chr4_4:40459012-40459031 | None:intergenic | 25.0% |
| !!! | CGGCAAAATTTTATTTATAG+AGG | - | chr4_4:40459062-40459081 | None:intergenic | 25.0% |
| ! | TATTCATATGTTCAATGCTT+AGG | + | chr4_4:40459602-40459621 | Msa0680830:intron | 25.0% |
| ! | ATTCATATGTTCAATGCTTA+GGG | + | chr4_4:40459603-40459622 | Msa0680830:intron | 25.0% |
| ! | ATTGAGAACATCTTCATATT+GGG | - | chr4_4:40459723-40459742 | None:intergenic | 25.0% |
| ! | AATTGAGAACATCTTCATAT+TGG | - | chr4_4:40459724-40459743 | None:intergenic | 25.0% |
| !!! | GTTTGTTGTGAAAAGTATAA+AGG | - | chr4_4:40459849-40459868 | None:intergenic | 25.0% |
| !! | ACTGCATAAAGCATTAATAA+TGG | - | chr4_4:40460204-40460223 | None:intergenic | 25.0% |
| ! | TTTATGCAGTAAAAATGTAC+AGG | + | chr4_4:40460214-40460233 | Msa0680830:CDS | 25.0% |
| ! | GCTAAAATTGCAATATTCTT+TGG | + | chr4_4:40460278-40460297 | Msa0680830:intron | 25.0% |
| ! | GACATTAAATTAAGGATCAA+AGG | - | chr4_4:40460327-40460346 | None:intergenic | 25.0% |
| ! | TAATTCAGTTAGATTGTTAC+TGG | - | chr4_4:40460375-40460394 | None:intergenic | 25.0% |
| ! | TACAACAAGAAATTAACCTT+TGG | - | chr4_4:40460660-40460679 | None:intergenic | 25.0% |
| ! | TTAACTTCAAATTCCAATGA+AGG | - | chr4_4:40460685-40460704 | None:intergenic | 25.0% |
| ! | ATATATATGGGAAGCAATTA+GGG | - | chr4_4:40461069-40461088 | None:intergenic | 25.0% |
| ! | TATATATATGGGAAGCAATT+AGG | - | chr4_4:40461070-40461089 | None:intergenic | 25.0% |
| !!! | TGTTTTGGTAAATAACTAGT+AGG | - | chr4_4:40461244-40461263 | None:intergenic | 25.0% |
| !!! | TGTTTTAGTAAAGTACAAGT+AGG | + | chr4_4:40461354-40461373 | Msa0680830:intron | 25.0% |
| !!! | TGTTTTGGTAAATAACTAGT+AGG | - | chr4_4:40461244-40461263 | None:intergenic | 25.0% |
| !!! | TGTTTTAGTAAAGTACAAGT+AGG | + | chr4_4:40461354-40461373 | Msa0680830:intron | 25.0% |
| !!! | TGTTTTGGTAAATAACTAGT+AGG | - | chr4_4:40461244-40461263 | None:intergenic | 25.0% |
| !!! | TGTTTTAGTAAAGTACAAGT+AGG | + | chr4_4:40461354-40461373 | Msa0680830:intron | 25.0% |
| !! | TCATTTAAATGATGATGCAA+TGG | + | chr4_4:40462155-40462174 | Msa0680830:intron | 25.0% |
| !! | CATTTAAATGATGATGCAAT+GGG | + | chr4_4:40462156-40462175 | Msa0680830:intron | 25.0% |
| ! | TGTTAGAAAGATGAAGTAAT+AGG | - | chr4_4:40462185-40462204 | None:intergenic | 25.0% |
| !!! | TTCCATTTGTTTTTTGTTAG+GGG | - | chr4_4:40462540-40462559 | None:intergenic | 25.0% |
| !!! | ATTTTGCAATATGGGTTAAT+AGG | + | chr4_4:40462608-40462627 | Msa0680830:intron | 25.0% |
| !! | TCTATTTGGTGAAATATGAT+TGG | + | chr4_4:40462758-40462777 | Msa0680830:intron | 25.0% |
| !! | ATTAGGTTTGTTCAATTGAA+GGG | - | chr4_4:40462845-40462864 | None:intergenic | 25.0% |
| !! | TATTAGGTTTGTTCAATTGA+AGG | - | chr4_4:40462846-40462865 | None:intergenic | 25.0% |
| ! | ACATTATTCAAATGTTACAC+TGG | - | chr4_4:40463039-40463058 | None:intergenic | 25.0% |
| ! | TTTGTTGAAATGTTATTGAG+TGG | - | chr4_4:40463066-40463085 | None:intergenic | 25.0% |
| ! | GATATAAACCTTCAATTCAA+TGG | - | chr4_4:40463108-40463127 | None:intergenic | 25.0% |
| ! | AATATATCAAAATTCAGTGG+CGG | + | chr4_4:40463186-40463205 | Msa0680830:intron | 25.0% |
| !!! | ATTTTTTAAATTTTGGGGGT+GGG | - | chr4_4:40463241-40463260 | None:intergenic | 25.0% |
| !! | TACTCATATTGAAGTTGTTT+TGG | + | chr4_4:40463277-40463296 | Msa0680830:intron | 25.0% |
| !!! | ACTCATATTGAAGTTGTTTT+GGG | + | chr4_4:40463278-40463297 | Msa0680830:intron | 25.0% |
| ! | ACATTATTCAAATGTTACAC+TGG | - | chr4_4:40463039-40463058 | None:intergenic | 25.0% |
| ! | GATATAAACCTTCAATTCAA+TGG | - | chr4_4:40463108-40463127 | None:intergenic | 25.0% |
| ! | AATATATCAAAATTCAGTGG+CGG | + | chr4_4:40463186-40463205 | Msa0680830:intron | 25.0% |
| !!! | ATTTTTTAAATTTTGGGGGT+GGG | - | chr4_4:40463241-40463260 | None:intergenic | 25.0% |
| !! | ATTATTTAAATCTTTCGGGT+GGG | - | chr4_4:40463659-40463678 | None:intergenic | 25.0% |
| ! | AATTATTTAAATCTTTCGGG+TGG | - | chr4_4:40463660-40463679 | None:intergenic | 25.0% |
| !!! | GCATTTATACAGTTTTATGT+CGG | + | chr4_4:40463702-40463721 | Msa0680830:intron | 25.0% |
| !!! | TAAGACATTAATTTTGACAG+TGG | - | chr4_4:40463883-40463902 | None:intergenic | 25.0% |
| ! | CTATTAATGTACAACAGAAT+TGG | + | chr4_4:40463984-40464003 | Msa0680830:intron | 25.0% |
| ! | TGGCTTATTGATATAAAACA+TGG | - | chr4_4:40464461-40464480 | None:intergenic | 25.0% |
| ! | ACATTGTAAATGAAAAACCA+TGG | - | chr4_4:40464492-40464511 | None:intergenic | 25.0% |
| ! | GTGGAAATTAATTTGAGGAA+AGG | - | chr4_4:40456082-40456101 | None:intergenic | 30.0% |
| ATTTACCTACGGTATCATAT+AGG | + | chr4_4:40456129-40456148 | Msa0680830:intron | 30.0% | |
| TGTTAATCATTCGATTCCAA+GGG | + | chr4_4:40456329-40456348 | Msa0680830:intron | 30.0% | |
| ! | CACTTGCAAATTTGTTTATG+TGG | + | chr4_4:40456418-40456437 | Msa0680830:intron | 30.0% |
| ! | GGCTGATTCTAATTGATTAT+CGG | + | chr4_4:40456439-40456458 | Msa0680830:intron | 30.0% |
| ! | CATATACTCTTTTATATGGG+TGG | + | chr4_4:40456707-40456726 | Msa0680830:CDS | 30.0% |
| GGAATATGAGATAGTATGTT+GGG | - | chr4_4:40456740-40456759 | None:intergenic | 30.0% | |
| ! | TTCTTTTTCCTTTAGCAGTT+TGG | - | chr4_4:40456818-40456837 | None:intergenic | 30.0% |
| ! | ACTTTCTCTCTCTATTGTTT+TGG | + | chr4_4:40457568-40457587 | Msa0680830:intron | 30.0% |
| TTGTTCAAATAACACCGTTA+TGG | + | chr4_4:40457657-40457676 | Msa0680830:intron | 30.0% | |
| CCAACAATAAGTTTCCATAA+CGG | - | chr4_4:40457674-40457693 | None:intergenic | 30.0% | |
| CGTTATGGAAACTTATTGTT+GGG | + | chr4_4:40457672-40457691 | Msa0680830:intron | 30.0% | |
| GTTATGGAAACTTATTGTTG+GGG | + | chr4_4:40457673-40457692 | Msa0680830:intron | 30.0% | |
| ! | ATTACTGTTGTTTATGACAG+CGG | + | chr4_4:40457698-40457717 | Msa0680830:intron | 30.0% |
| GTTGTAATACAAACTTACGA+CGG | - | chr4_4:40457936-40457955 | None:intergenic | 30.0% | |
| !!! | CATACAAAGTTTGGTTTTAC+AGG | + | chr4_4:40458167-40458186 | Msa0680830:intron | 30.0% |
| ! | GGTACCATATAGATTTTTGA+GGG | - | chr4_4:40458411-40458430 | None:intergenic | 30.0% |
| ! | AGGTACCATATAGATTTTTG+AGG | - | chr4_4:40458412-40458431 | None:intergenic | 30.0% |
| TATGGTACCTCAATTTAATG+TGG | + | chr4_4:40458422-40458441 | Msa0680830:CDS | 30.0% | |
| TAAAAGGCCACATTAAATTG+AGG | - | chr4_4:40458432-40458451 | None:intergenic | 30.0% | |
| ! | CATACTTGTGTTTGAAATCT+TGG | - | chr4_4:40458550-40458569 | None:intergenic | 30.0% |
| TGATAAAAGACACCTTCAAA+GGG | - | chr4_4:40458677-40458696 | None:intergenic | 30.0% | |
| TTGATAAAAGACACCTTCAA+AGG | - | chr4_4:40458678-40458697 | None:intergenic | 30.0% | |
| CTAAAAGACACCTTCATAAA+AGG | + | chr4_4:40458742-40458761 | Msa0680830:intron | 30.0% | |
| ! | ATAGAAGACACCTTTTATGA+AGG | - | chr4_4:40458755-40458774 | None:intergenic | 30.0% |
| TTGAGAAATACTACAAAACC+AGG | - | chr4_4:40458878-40458897 | None:intergenic | 30.0% | |
| TCTCAAAAAGGAGTAGTATA+AGG | + | chr4_4:40458892-40458911 | Msa0680830:CDS | 30.0% | |
| CTCAAAAAGGAGTAGTATAA+GGG | + | chr4_4:40458893-40458912 | Msa0680830:CDS | 30.0% | |
| GATTGAAGAGACAATAATGA+AGG | + | chr4_4:40458926-40458945 | Msa0680830:CDS | 30.0% | |
| TAAGGAAATGGAGTATATCT+CGG | - | chr4_4:40459128-40459147 | None:intergenic | 30.0% | |
| AAATTTCCTAGCAGATCATA+AGG | - | chr4_4:40459146-40459165 | None:intergenic | 30.0% | |
| TAGAGTACAGTAAACTACAA+TGG | - | chr4_4:40459475-40459494 | None:intergenic | 30.0% | |
| TTCTTATTACTTGGAACTGA+AGG | - | chr4_4:40459524-40459543 | None:intergenic | 30.0% | |
| ! | GTGATTTTATCACCAAATGT+TGG | + | chr4_4:40459908-40459927 | Msa0680830:intron | 30.0% |
| TTTCATTGTTGACCAACATT+TGG | - | chr4_4:40459923-40459942 | None:intergenic | 30.0% | |
| CTGAAGATTAAAGTTGTAGA+TGG | + | chr4_4:40460086-40460105 | Msa0680830:CDS | 30.0% | |
| CAAGTTTAATAAGGTTGCTT+TGG | + | chr4_4:40460178-40460197 | Msa0680830:CDS | 30.0% | |
| !! | TTAACCTTTGGAGTATTGAT+TGG | - | chr4_4:40460648-40460667 | None:intergenic | 30.0% |
| ! | TTCTTGTTGTAATCCTTCAT+TGG | + | chr4_4:40460669-40460688 | Msa0680830:intron | 30.0% |
| ! | TTAAATTTGAAATCAGAGGG+AGG | + | chr4_4:40460933-40460952 | Msa0680830:intron | 30.0% |
| TATATATGGGAAGCAATTAG+GGG | - | chr4_4:40461068-40461087 | None:intergenic | 30.0% | |
| ! | ATAGAAAAACATGGGTGTTT+TGG | - | chr4_4:40461259-40461278 | None:intergenic | 30.0% |
| ! | ATAGAAAAACATGGGTGTTT+TGG | - | chr4_4:40461259-40461278 | None:intergenic | 30.0% |
| ! | ATAGAAAAACATGGGTGTTT+TGG | - | chr4_4:40461259-40461278 | None:intergenic | 30.0% |
| ATCTAACAGATATGGTTAGT+TGG | + | chr4_4:40462211-40462230 | Msa0680830:intron | 30.0% | |
| ! | TTTGGAGCAAAATGAGAAAA+AGG | - | chr4_4:40462292-40462311 | None:intergenic | 30.0% |
| !! | TTATCATTGATGGTGTATAG+TGG | - | chr4_4:40462339-40462358 | None:intergenic | 30.0% |
| !! | AAGCCAACCTATTTGTTATT+GGG | + | chr4_4:40462566-40462585 | Msa0680830:intron | 30.0% |
| ! | TACTCAGATTGAAGTTGTTT+TGG | + | chr4_4:40462975-40462994 | Msa0680830:intron | 30.0% |
| !! | ACTCAGATTGAAGTTGTTTT+GGG | + | chr4_4:40462976-40462995 | Msa0680830:intron | 30.0% |
| AGAATCTACCATTGAATTGA+AGG | + | chr4_4:40463097-40463116 | Msa0680830:intron | 30.0% | |
| !!! | GATTTTTTAAATTTTGGGGG+TGG | - | chr4_4:40463242-40463261 | None:intergenic | 30.0% |
| AGAATCTACCATTGAATTGA+AGG | + | chr4_4:40463097-40463116 | Msa0680830:intron | 30.0% | |
| !!! | GATTTTTTAAATTTTGGGGG+TGG | - | chr4_4:40463242-40463261 | None:intergenic | 30.0% |
| !!! | TACAATTTTGTGTCGGTTTT+AGG | + | chr4_4:40463595-40463614 | Msa0680830:intron | 30.0% |
| !!! | TACAGTTTTATGTCGGTTTT+AGG | + | chr4_4:40463709-40463728 | Msa0680830:intron | 30.0% |
| !!! | TTTATGTCGGTTTTAGGTTT+CGG | + | chr4_4:40463715-40463734 | Msa0680830:intron | 30.0% |
| TAATTCATGCCTTAGAAAGA+TGG | + | chr4_4:40464047-40464066 | Msa0680830:CDS | 30.0% | |
| AATTCATGCCTTAGAAAGAT+GGG | + | chr4_4:40464048-40464067 | Msa0680830:CDS | 30.0% | |
| TACTTGACATTGAGAAAGTA+TGG | + | chr4_4:40464095-40464114 | Msa0680830:CDS | 30.0% | |
| ! | ACTTGACATTGAGAAAGTAT+GGG | + | chr4_4:40464096-40464115 | Msa0680830:CDS | 30.0% |
| !! | GATTAGTTTGGAATCTTAAG+AGG | - | chr4_4:40464148-40464167 | None:intergenic | 30.0% |
| TCGTTATTAGTGCATCTATT+TGG | + | chr4_4:40464412-40464431 | Msa0680830:three_prime_UTR | 30.0% | |
| ATTAGTGCATCTATTTGGTT+AGG | + | chr4_4:40464417-40464436 | Msa0680830:three_prime_UTR | 30.0% | |
| TTAGTGCATCTATTTGGTTA+GGG | + | chr4_4:40464418-40464437 | Msa0680830:three_prime_UTR | 30.0% | |
| CGAAAACAGTCAAGAAATGT+TGG | - | chr4_4:40456242-40456261 | None:intergenic | 35.0% | |
| GTGTTAATCATTCGATTCCA+AGG | + | chr4_4:40456328-40456347 | Msa0680830:intron | 35.0% | |
| ACGAACTTAGGGTTCATAAT+CGG | - | chr4_4:40456660-40456679 | None:intergenic | 35.0% | |
| TATATGCTATGAGCAATCCA+CGG | - | chr4_4:40456693-40456712 | None:intergenic | 35.0% | |
| GGGAATATGAGATAGTATGT+TGG | - | chr4_4:40456741-40456760 | None:intergenic | 35.0% | |
| GAATGTTGCACAATCAGATA+TGG | + | chr4_4:40456775-40456794 | Msa0680830:CDS | 35.0% | |
| ! | AATTAGTTTCTCTGTCGACT+TGG | - | chr4_4:40456869-40456888 | None:intergenic | 35.0% |
| AAGTCGACAGAGAAACTAAT+TGG | + | chr4_4:40456868-40456887 | Msa0680830:CDS | 35.0% | |
| TTTCATTGTGTGACATTTGC+AGG | + | chr4_4:40457200-40457219 | Msa0680830:intron | 35.0% | |
| TTCATTGTGTGACATTTGCA+GGG | + | chr4_4:40457201-40457220 | Msa0680830:intron | 35.0% | |
| CAATAGTATAAGAACTCCAC+TGG | - | chr4_4:40457349-40457368 | None:intergenic | 35.0% | |
| CAGTGGAGTTCTTATACTAT+TGG | + | chr4_4:40457347-40457366 | Msa0680830:CDS | 35.0% | |
| ! | TTGAAGAATGATGGTGAGAA+TGG | - | chr4_4:40457414-40457433 | None:intergenic | 35.0% |
| CAGTGACTATTGAAGAATGA+TGG | - | chr4_4:40457423-40457442 | None:intergenic | 35.0% | |
| AAAAAGTTCGTACCAGTGAT+AGG | - | chr4_4:40457448-40457467 | None:intergenic | 35.0% | |
| CCGTTATGGAAACTTATTGT+TGG | + | chr4_4:40457671-40457690 | Msa0680830:intron | 35.0% | |
| TGTGAAATATGCCAACATCT+CGG | - | chr4_4:40457739-40457758 | None:intergenic | 35.0% | |
| TGAACAATGTTGTCGACATT+GGG | - | chr4_4:40457773-40457792 | None:intergenic | 35.0% | |
| ATGAACAATGTTGTCGACAT+TGG | - | chr4_4:40457774-40457793 | None:intergenic | 35.0% | |
| GTTCATGAAAAAATCGTCTG+TGG | + | chr4_4:40457788-40457807 | Msa0680830:CDS | 35.0% | |
| AAGTAGGAGAAGAGTTTCTT+AGG | - | chr4_4:40457885-40457904 | None:intergenic | 35.0% | |
| TACGTGAGATACTTCAATTG+GGG | - | chr4_4:40457909-40457928 | None:intergenic | 35.0% | |
| GTACGTGAGATACTTCAATT+GGG | - | chr4_4:40457910-40457929 | None:intergenic | 35.0% | |
| TGTACGTGAGATACTTCAAT+TGG | - | chr4_4:40457911-40457930 | None:intergenic | 35.0% | |
| TGACTACATTTATGGTACTG+TGG | + | chr4_4:40458249-40458268 | Msa0680830:CDS | 35.0% | |
| TCCATCTTTCAACTACGTTT+AGG | + | chr4_4:40458364-40458383 | Msa0680830:CDS | 35.0% | |
| CCATCTTTCAACTACGTTTA+GGG | + | chr4_4:40458365-40458384 | Msa0680830:CDS | 35.0% | |
| !! | TATAGATTTTTGAGGGTTGG+AGG | - | chr4_4:40458404-40458423 | None:intergenic | 35.0% |
| !! | CCATATAGATTTTTGAGGGT+TGG | - | chr4_4:40458407-40458426 | None:intergenic | 35.0% |
| CCAACCCTCAAAAATCTATA+TGG | + | chr4_4:40458404-40458423 | Msa0680830:CDS | 35.0% | |
| AGCATAGAGCACATTGTAAA+AGG | - | chr4_4:40458448-40458467 | None:intergenic | 35.0% | |
| ! | ATGCTTATGACTTGGATTAG+TGG | + | chr4_4:40458463-40458482 | Msa0680830:CDS | 35.0% |
| ! | TTTTATCAAGTCACACCTCA+AGG | + | chr4_4:40458689-40458708 | Msa0680830:intron | 35.0% |
| ! | TCAACACATCTTTGATTTCC+TGG | + | chr4_4:40458857-40458876 | Msa0680830:intron | 35.0% |
| ATAATGAAGGCTGAGATAAG+TGG | + | chr4_4:40458939-40458958 | Msa0680830:CDS | 35.0% | |
| AAATGGAGTATATCTCGGTT+CGG | - | chr4_4:40459123-40459142 | None:intergenic | 35.0% | |
| ATCTGCTAGGAAATTTGAAG+TGG | + | chr4_4:40459150-40459169 | Msa0680830:intron | 35.0% | |
| !!! | GAAGAGAGGAAAGTGTTTTA+GGG | + | chr4_4:40459172-40459191 | Msa0680830:intron | 35.0% |
| !!! | AAGAGAGGAAAGTGTTTTAG+GGG | + | chr4_4:40459173-40459192 | Msa0680830:intron | 35.0% |
| !! | TCACAGGATTTGTTAAGACT+GGG | - | chr4_4:40459336-40459355 | None:intergenic | 35.0% |
| !! | TTCACAGGATTTGTTAAGAC+TGG | - | chr4_4:40459337-40459356 | None:intergenic | 35.0% |
| TACAGTAAACTACAATGGAG+GGG | - | chr4_4:40459470-40459489 | None:intergenic | 35.0% | |
| GTACAGTAAACTACAATGGA+GGG | - | chr4_4:40459471-40459490 | None:intergenic | 35.0% | |
| AGTACAGTAAACTACAATGG+AGG | - | chr4_4:40459472-40459491 | None:intergenic | 35.0% | |
| TTCATATTGGGTAACAAGGA+GGG | - | chr4_4:40459711-40459730 | None:intergenic | 35.0% | |
| CATCTTCATATTGGGTAACA+AGG | - | chr4_4:40459715-40459734 | None:intergenic | 35.0% | |
| ! | CAGACACACTTTTCGAATAT+CGG | - | chr4_4:40459826-40459845 | None:intergenic | 35.0% |
| ACTGCGCACTTTATATTGAA+AGG | + | chr4_4:40460054-40460073 | Msa0680830:CDS | 35.0% | |
| TGCTTAACAACATTCCCAAA+GGG | + | chr4_4:40460132-40460151 | Msa0680830:CDS | 35.0% | |
| GATCAAAGGAAACTACAACA+GGG | - | chr4_4:40460313-40460332 | None:intergenic | 35.0% | |
| ATCACCAATCAATACTCCAA+AGG | + | chr4_4:40460641-40460660 | Msa0680830:CDS | 35.0% | |
| ! | ACTTGCACCTTAGTGTTTTT+AGG | - | chr4_4:40461389-40461408 | None:intergenic | 35.0% |
| ! | ACTTGCACCTTAGTGTTTTT+AGG | - | chr4_4:40461389-40461408 | None:intergenic | 35.0% |
| ! | ACTTGCACCTTAGTGTTTTT+AGG | + | chr4_4:40461389-40461408 | Msa0680830:intron | 35.0% |
| ! | ACTTGCACCTTAGTGTTTTT+AGG | - | chr4_4:40461389-40461408 | None:intergenic | 35.0% |
| ! | ACTTGCACCTTAGTGTTTTT+AGG | + | chr4_4:40461389-40461408 | Msa0680830:intron | 35.0% |
| ! | TATGGTTAGTTGGAGATGAA+TGG | + | chr4_4:40462221-40462240 | Msa0680830:CDS | 35.0% |
| ! | ATGGTTAGTTGGAGATGAAT+GGG | + | chr4_4:40462222-40462241 | Msa0680830:CDS | 35.0% |
| ! | CAACCTTTTCGCATTTTCTT+TGG | - | chr4_4:40462310-40462329 | None:intergenic | 35.0% |
| TCTGTAGGACTTATCATTGA+TGG | - | chr4_4:40462349-40462368 | None:intergenic | 35.0% | |
| GATAGAACTGTCAAATGAGA+TGG | + | chr4_4:40462492-40462511 | Msa0680830:intron | 35.0% | |
| !! | CAAGCCAACCTATTTGTTAT+TGG | + | chr4_4:40462565-40462584 | Msa0680830:intron | 35.0% |
| CATCCCAATAACAAATAGGT+TGG | - | chr4_4:40462572-40462591 | None:intergenic | 35.0% | |
| TGTGCATCCCAATAACAAAT+AGG | - | chr4_4:40462576-40462595 | None:intergenic | 35.0% | |
| !!! | TTTGTGTCGGTTTTAGGTTT+CGG | + | chr4_4:40463601-40463620 | Msa0680830:intron | 35.0% |
| CTAGAAAAAAAAGCTAGGGT+GGG | - | chr4_4:40463855-40463874 | None:intergenic | 35.0% | |
| GGAGCTAGAAAAAAAAGCTA+GGG | - | chr4_4:40463859-40463878 | None:intergenic | 35.0% | |
| !! | GACATTAATTTTGACAGTGG+CGG | - | chr4_4:40463880-40463899 | None:intergenic | 35.0% |
| ! | AGTTTGGAATCTTAAGAGGT+AGG | - | chr4_4:40464144-40464163 | None:intergenic | 35.0% |
| ! | CCATACTTGTCTGATTAGTT+TGG | - | chr4_4:40464160-40464179 | None:intergenic | 35.0% |
| CCAAACTAATCAGACAAGTA+TGG | + | chr4_4:40464157-40464176 | Msa0680830:exon | 35.0% | |
| AATAAGCCAAATATTCGCCA+TGG | + | chr4_4:40464472-40464491 | Msa0680830:three_prime_UTR | 35.0% | |
| GAAAAACCATGGCGAATATT+TGG | - | chr4_4:40464481-40464500 | None:intergenic | 35.0% | |
| TCATACTATGGCTTCCAAAG+CGG | + | chr4_4:40455917-40455936 | Msa0680830:exon | 40.0% | |
| TAATTTGAGGAAAGGGTCGA+GGG | - | chr4_4:40456074-40456093 | None:intergenic | 40.0% | |
| ! | TTAATTTGAGGAAAGGGTCG+AGG | - | chr4_4:40456075-40456094 | None:intergenic | 40.0% |
| CAACACCTATATGATACCGT+AGG | - | chr4_4:40456137-40456156 | None:intergenic | 40.0% | |
| ! | GTTGGTGAAGAAGATTTCGA+CGG | + | chr4_4:40456279-40456298 | Msa0680830:intron | 40.0% |
| CGAACTTAGGGTTCATAATC+GGG | - | chr4_4:40456659-40456678 | None:intergenic | 40.0% | |
| GGCTTAGAATCACGAACTTA+GGG | - | chr4_4:40456671-40456690 | None:intergenic | 40.0% | |
| ATATGCTATGAGCAATCCAC+GGG | - | chr4_4:40456692-40456711 | None:intergenic | 40.0% | |
| AAGAATTGTTGACAAAGGCC+TGG | + | chr4_4:40456836-40456855 | Msa0680830:CDS | 40.0% | |
| ATACTTCAATTGGGGGAAGT+AGG | - | chr4_4:40457901-40457920 | None:intergenic | 40.0% | |
| ACGTGAGATACTTCAATTGG+GGG | - | chr4_4:40457908-40457927 | None:intergenic | 40.0% | |
| CGCTGCATCACACAAAATTT+AGG | + | chr4_4:40458197-40458216 | Msa0680830:CDS | 40.0% | |
| AGCTTCATATGTAGCATCTG+AGG | - | chr4_4:40458281-40458300 | None:intergenic | 40.0% | |
| CCCTAAACGTAGTTGAAAGA+TGG | - | chr4_4:40458368-40458387 | None:intergenic | 40.0% | |
| TGTGCTCTATGCTTATGACT+TGG | + | chr4_4:40458455-40458474 | Msa0680830:CDS | 40.0% | |
| TAAAAGACACCTTCAAAGGG+TGG | - | chr4_4:40458674-40458693 | None:intergenic | 40.0% | |
| AAAGTGGAAATCACACCTTG+AGG | - | chr4_4:40458707-40458726 | None:intergenic | 40.0% | |
| TGGAGTAAAGGTGATAAGTC+TGG | + | chr4_4:40458959-40458978 | Msa0680830:CDS | 40.0% | |
| GGAGTAAAGGTGATAAGTCT+GGG | + | chr4_4:40458960-40458979 | Msa0680830:CDS | 40.0% | |
| !! | AAGTCTGGGACTTTTAAACC+AGG | + | chr4_4:40458974-40458993 | Msa0680830:CDS | 40.0% |
| CCTAGCAGATCATAAGGAAA+TGG | - | chr4_4:40459140-40459159 | None:intergenic | 40.0% | |
| CCATTTCCTTATGATCTGCT+AGG | + | chr4_4:40459137-40459156 | Msa0680830:intron | 40.0% | |
| ! | GGAAATTTGAAGTGGAAGAG+AGG | + | chr4_4:40459158-40459177 | Msa0680830:intron | 40.0% |
| !!! | GGAAGAGAGGAAAGTGTTTT+AGG | + | chr4_4:40459171-40459190 | Msa0680830:intron | 40.0% |
| !!! | AGAGAGGAAAGTGTTTTAGG+GGG | + | chr4_4:40459174-40459193 | Msa0680830:intron | 40.0% |
| TTATTGGAGGGAGATTTCAC+AGG | - | chr4_4:40459352-40459371 | None:intergenic | 40.0% | |
| CTTCATATTGGGTAACAAGG+AGG | - | chr4_4:40459712-40459731 | None:intergenic | 40.0% | |
| GTGCTTAACAACATTCCCAA+AGG | + | chr4_4:40460131-40460150 | Msa0680830:CDS | 40.0% | |
| ACTCAGGGGCAAGTTTAATA+AGG | + | chr4_4:40460169-40460188 | Msa0680830:CDS | 40.0% | |
| GGATCAAAGGAAACTACAAC+AGG | - | chr4_4:40460314-40460333 | None:intergenic | 40.0% | |
| !!! | GCACCTTAGTGTTTTTAGGT+GGG | - | chr4_4:40461393-40461412 | None:intergenic | 40.0% |
| !!! | TGCACCTTAGTGTTTTTAGG+TGG | - | chr4_4:40461392-40461411 | None:intergenic | 40.0% |
| !!! | GCACCTTAGTGTTTTTAGGT+GGG | - | chr4_4:40461393-40461412 | None:intergenic | 40.0% |
| !!! | TGCACCTTAGTGTTTTTAGG+TGG | - | chr4_4:40461392-40461411 | None:intergenic | 40.0% |
| !!! | TGCACCTTAGTGTTTTTAGG+TGG | + | chr4_4:40461392-40461411 | Msa0680830:intron | 40.0% |
| !!! | GCACCTTAGTGTTTTTAGGT+GGG | + | chr4_4:40461393-40461412 | Msa0680830:intron | 40.0% |
| !!! | GCACCTTAGTGTTTTTAGGT+GGG | - | chr4_4:40461393-40461412 | None:intergenic | 40.0% |
| !!! | TGCACCTTAGTGTTTTTAGG+TGG | - | chr4_4:40461392-40461411 | None:intergenic | 40.0% |
| !!! | TGCACCTTAGTGTTTTTAGG+TGG | + | chr4_4:40461392-40461411 | Msa0680830:intron | 40.0% |
| !!! | GCACCTTAGTGTTTTTAGGT+GGG | + | chr4_4:40461393-40461412 | Msa0680830:intron | 40.0% |
| GCTCCAAAGAAAATGCGAAA+AGG | + | chr4_4:40462304-40462323 | Msa0680830:CDS | 40.0% | |
| TGCAGGTTTATGACTTCTGT+AGG | - | chr4_4:40462364-40462383 | None:intergenic | 40.0% | |
| GGCCCCTAACAAAAAACAAA+TGG | + | chr4_4:40462535-40462554 | Msa0680830:intron | 40.0% | |
| TACATCACTTTGCGGGAATT+TGG | - | chr4_4:40463632-40463651 | None:intergenic | 40.0% | |
| ACATCACTTTGCGGGAATTT+GGG | - | chr4_4:40463631-40463650 | None:intergenic | 40.0% | |
| TACATCACTTTGCGGGAATT+TGG | - | chr4_4:40463632-40463651 | None:intergenic | 40.0% | |
| GCTAGAAAAAAAAGCTAGGG+TGG | - | chr4_4:40463856-40463875 | None:intergenic | 40.0% | |
| CGGAGCTAGAAAAAAAAGCT+AGG | - | chr4_4:40463860-40463879 | None:intergenic | 40.0% | |
| GTGAACATCCCATCTTTCTA+AGG | - | chr4_4:40464059-40464078 | None:intergenic | 40.0% | |
| TCTTAAGAGGTAGGTAACCA+TGG | - | chr4_4:40464135-40464154 | None:intergenic | 40.0% | |
| CATACTATGGCTTCCAAAGC+GGG | + | chr4_4:40455918-40455937 | Msa0680830:exon | 45.0% | |
| GTTTCCAAGGCCAGTTTGTA+AGG | - | chr4_4:40455947-40455966 | None:intergenic | 45.0% | |
| AATTACCAGAGCTCTTCCCT+TGG | - | chr4_4:40456348-40456367 | None:intergenic | 45.0% | |
| GGGCTTAGAATCACGAACTT+AGG | - | chr4_4:40456672-40456691 | None:intergenic | 45.0% | |
| TCACGCTACCAAACTGCTAA+AGG | + | chr4_4:40456807-40456826 | Msa0680830:CDS | 45.0% | |
| TGTTCTCCACCATGGTAAGT+TGG | - | chr4_4:40457290-40457309 | None:intergenic | 45.0% | |
| ! | TTACCATGGTGGAGAACAGA+TGG | + | chr4_4:40457292-40457311 | Msa0680830:CDS | 45.0% |
| CTTACAGCTATCTTGCATGC+TGG | + | chr4_4:40457322-40457341 | Msa0680830:CDS | 45.0% | |
| ATAGTCACTGAGCCTATCAC+TGG | + | chr4_4:40457433-40457452 | Msa0680830:CDS | 45.0% | |
| ACATCCATTTGCCGAGATGT+TGG | + | chr4_4:40457725-40457744 | Msa0680830:CDS | 45.0% | |
| TATGCCAACATCTCGGCAAA+TGG | - | chr4_4:40457732-40457751 | None:intergenic | 45.0% | |
| TGTGTTAAGTGCACCACATC+TGG | - | chr4_4:40458328-40458347 | None:intergenic | 45.0% | |
| !! | TTTTTGAGGGTTGGAGGCTA+AGG | - | chr4_4:40458398-40458417 | None:intergenic | 45.0% |
| AAGATCTCAAGCTGCAGTGT+TGG | + | chr4_4:40458518-40458537 | Msa0680830:CDS | 45.0% | |
| TGTTACAAGCCACCCTTTGA+AGG | + | chr4_4:40458662-40458681 | Msa0680830:intron | 45.0% | |
| GGCTGAGATAAGTGGAGTAA+AGG | + | chr4_4:40458947-40458966 | Msa0680830:CDS | 45.0% | |
| AACGGGTGTGTGAATTTACC+TGG | - | chr4_4:40458995-40459014 | None:intergenic | 45.0% | |
| ! | AGCACTTGATTCGTCCCTTT+GGG | - | chr4_4:40460149-40460168 | None:intergenic | 45.0% |
| ! | TAGCACTTGATTCGTCCCTT+TGG | - | chr4_4:40460150-40460169 | None:intergenic | 45.0% |
| ! | GACGAATCAAGTGCTACTCA+GGG | + | chr4_4:40460154-40460173 | Msa0680830:CDS | 45.0% |
| ! | ACGAATCAAGTGCTACTCAG+GGG | + | chr4_4:40460155-40460174 | Msa0680830:CDS | 45.0% |
| AGCTGAAAGAGCTTGAACGA+AGG | + | chr4_4:40460589-40460608 | Msa0680830:CDS | 45.0% | |
| GCTGAAAGAGCTTGAACGAA+GGG | + | chr4_4:40460590-40460609 | Msa0680830:CDS | 45.0% | |
| TGATAGAGCCAAGCTTCCAT+CGG | - | chr4_4:40460625-40460644 | None:intergenic | 45.0% | |
| TGAAATCAGAGGGAGGATTG+TGG | + | chr4_4:40460940-40460959 | Msa0680830:intron | 45.0% | |
| TTGTGGTGCTTCCTCTTACA+AGG | + | chr4_4:40460957-40460976 | Msa0680830:intron | 45.0% | |
| AAACAAGAAAATGGGCCCTC+CGG | - | chr4_4:40460986-40461005 | None:intergenic | 45.0% | |
| GCACCCACCTAAAAACACTA+AGG | + | chr4_4:40461199-40461218 | Msa0680830:intron | 45.0% | |
| GCACCCACCTAAAAACACTA+AGG | + | chr4_4:40461199-40461218 | Msa0680830:intron | 45.0% | |
| GCACCCACCTAAAAACACTA+AGG | - | chr4_4:40461199-40461218 | None:intergenic | 45.0% | |
| GCACCCACCTAAAAACACTA+AGG | + | chr4_4:40461199-40461218 | Msa0680830:intron | 45.0% | |
| GCACCCACCTAAAAACACTA+AGG | - | chr4_4:40461199-40461218 | None:intergenic | 45.0% | |
| GAGCAAATGCAAGCATCAGA+AGG | + | chr4_4:40462253-40462272 | Msa0680830:CDS | 45.0% | |
| CATAAACCTGCATTCGTGTG+AGG | + | chr4_4:40462372-40462391 | Msa0680830:CDS | 45.0% | |
| ATTCCCGCAAAGTGATGTAG+TGG | + | chr4_4:40463633-40463652 | Msa0680830:intron | 45.0% | |
| ATTCCCGCAAAGTGATGTAG+TGG | + | chr4_4:40463633-40463652 | Msa0680830:intron | 45.0% | |
| CAAGCACTCATGACTCTTCT+TGG | - | chr4_4:40464013-40464032 | None:intergenic | 45.0% | |
| CAAGAAGAGTCATGAGTGCT+TGG | + | chr4_4:40464011-40464030 | Msa0680830:CDS | 45.0% | |
| !! | TACATATATATATATATATA+GGG | - | chr4_4:40458783-40458802 | None:intergenic | 5.0% |
| !! | ATACATATATATATATATAT+AGG | - | chr4_4:40458784-40458803 | None:intergenic | 5.0% |
| !!! | AATTTATTTTTTAATTTTAG+AGG | + | chr4_4:40459274-40459293 | Msa0680830:intron | 5.0% |
| !! | ATAGAAATAAAAAAAATTAT+TGG | - | chr4_4:40459368-40459387 | None:intergenic | 5.0% |
| !!! | ATAATTTTTTTTATTTCTAT+TGG | + | chr4_4:40459368-40459387 | Msa0680830:intron | 5.0% |
| !!! | AAAATAATAAATATTTTATG+TGG | - | chr4_4:40459802-40459821 | None:intergenic | 5.0% |
| !! | TATATATATATATATATAAG+GGG | + | chr4_4:40461166-40461185 | Msa0680830:intron | 5.0% |
| !!! | TAAACTTTATTTTAATTAAA+AGG | - | chr4_4:40461319-40461338 | None:intergenic | 5.0% |
| !! | TATATATATATATATATATG+GGG | - | chr4_4:40458637-40458656 | None:intergenic | 5.0% |
| !! | TATATATATATATATATATG+AGG | + | chr4_4:40458637-40458656 | Msa0680830:intron | 5.0% |
| !! | ATATATATATATATATATGA+GGG | + | chr4_4:40461456-40461475 | Msa0680830:intron | 5.0% |
| !!! | TAAACTTTATTTTAATTAAA+AGG | - | chr4_4:40461319-40461338 | None:intergenic | 5.0% |
| !!! | TAAACTTTATTTTAATTAAA+AGG | - | chr4_4:40461319-40461338 | None:intergenic | 5.0% |
| !! | TATATATATATATATATATG+GGG | - | chr4_4:40458637-40458656 | None:intergenic | 5.0% |
| !!! | ATTTAAAATCTAATTAATAA+TGG | + | chr4_4:40462132-40462151 | Msa0680830:intron | 5.0% |
| !!! | ATTTAAATTATTATTTTTTC+TGG | + | chr4_4:40462645-40462664 | Msa0680830:intron | 5.0% |
| !!! | TTTAAATTATTATTTTTTCT+GGG | + | chr4_4:40462646-40462665 | Msa0680830:intron | 5.0% |
| !!! | ATTGAATTATTTAAATTTTT+CGG | - | chr4_4:40463778-40463797 | None:intergenic | 5.0% |
| !! | AATTTAAATAATTCAATTAT+AGG | + | chr4_4:40463781-40463800 | Msa0680830:intron | 5.0% |
| GTTTGTAAGGATGCCCGCTT+TGG | - | chr4_4:40455934-40455953 | None:intergenic | 50.0% | |
| AAGCGGGCATCCTTACAAAC+TGG | + | chr4_4:40455934-40455953 | Msa0680830:CDS | 50.0% | |
| ! | GCATCCTTACAAACTGGCCT+TGG | + | chr4_4:40455940-40455959 | Msa0680830:CDS | 50.0% |
| !! | AACTGGCCTTGGAAACCTCT+TGG | + | chr4_4:40455951-40455970 | Msa0680830:CDS | 50.0% |
| !! | ACTGGCCTTGGAAACCTCTT+GGG | + | chr4_4:40455952-40455971 | Msa0680830:CDS | 50.0% |
| AAGCTCCCAAGAGGTTTCCA+AGG | - | chr4_4:40455960-40455979 | None:intergenic | 50.0% | |
| GAAACCTCTTGGGAGCTTCA+AGG | + | chr4_4:40455962-40455981 | Msa0680830:CDS | 50.0% | |
| ACAACCTTGAAGCTCCCAAG+AGG | - | chr4_4:40455969-40455988 | None:intergenic | 50.0% | |
| AGTTCGTGATTCTAAGCCCG+TGG | + | chr4_4:40456673-40456692 | Msa0680830:intron | 50.0% | |
| !! | TGTCGACTTGGTCGAATTCC+AGG | - | chr4_4:40456857-40456876 | None:intergenic | 50.0% |
| ! | CATGGTAAGTTGGCAGCCAT+AGG | - | chr4_4:40457280-40457299 | None:intergenic | 50.0% |
| CTATGGCTGCCAACTTACCA+TGG | + | chr4_4:40457278-40457297 | Msa0680830:CDS | 50.0% | |
| ACACCATCTGTTCTCCACCA+TGG | - | chr4_4:40457298-40457317 | None:intergenic | 50.0% | |
| ! | ATGGTGGAGAACAGATGGTG+TGG | + | chr4_4:40457297-40457316 | Msa0680830:CDS | 50.0% |
| TATCTTGCATGCTGGACCAG+TGG | + | chr4_4:40457330-40457349 | Msa0680830:CDS | 50.0% | |
| ! | AGCTTGTTCGAAGAGACCAG+AGG | + | chr4_4:40458297-40458316 | Msa0680830:CDS | 50.0% |
| ! | GGACGAATCAAGTGCTACTC+AGG | + | chr4_4:40460153-40460172 | Msa0680830:CDS | 50.0% |
| TGGTGCTTCCTCTTACAAGG+TGG | + | chr4_4:40460960-40460979 | Msa0680830:intron | 50.0% | |
| TGGGTGCAAGTTAACAGTGG+GGG | - | chr4_4:40461722-40461741 | None:intergenic | 50.0% | |
| GTGGGTGCAAGTTAACAGTG+GGG | - | chr4_4:40461723-40461742 | None:intergenic | 50.0% | |
| GGTGGGTGCAAGTTAACAGT+GGG | - | chr4_4:40461724-40461743 | None:intergenic | 50.0% | |
| AGGTGGGTGCAAGTTAACAG+TGG | - | chr4_4:40461409-40461428 | None:intergenic | 50.0% | |
| AACCTGCATTCGTGTGAGGT+TGG | + | chr4_4:40462376-40462395 | Msa0680830:intron | 50.0% | |
| TACCAACCTCACACGAATGC+AGG | - | chr4_4:40462381-40462400 | None:intergenic | 50.0% | |
| AATGAGATGGTCGATCCGAG+AGG | + | chr4_4:40462505-40462524 | Msa0680830:intron | 50.0% | |
| TGGGCCACTACATCACTTTG+CGG | - | chr4_4:40463640-40463659 | None:intergenic | 50.0% | |
| TGGGCCACTACATCACTTTG+CGG | - | chr4_4:40463640-40463659 | None:intergenic | 50.0% | |
| AGATGGGATGTTCACGAGTG+TGG | + | chr4_4:40464064-40464083 | Msa0680830:CDS | 50.0% | |
| TGGGAAGCAAGTATTCGCCA+TGG | + | chr4_4:40464115-40464134 | Msa0680830:CDS | 50.0% | |
| CGATTCCAAGGGAAGAGCTC+TGG | + | chr4_4:40456340-40456359 | Msa0680830:intron | 55.0% | |
| TGGCTGCCAACTTACCATGG+TGG | + | chr4_4:40457281-40457300 | Msa0680830:CDS | 55.0% | |
| TCGTCTGTGGCTGCACTGTA+TGG | + | chr4_4:40457801-40457820 | Msa0680830:CDS | 55.0% | |
| ACCAGAGGAGTCACCAGATG+TGG | + | chr4_4:40458312-40458331 | Msa0680830:CDS | 55.0% | |
| ACCACATCTGGTGACTCCTC+TGG | - | chr4_4:40458316-40458335 | None:intergenic | 55.0% | |
| AGCCAAGCTTCCATCGGACA+CGG | - | chr4_4:40460619-40460638 | None:intergenic | 55.0% | |
| GCTTCCTCTTACAAGGTGGC+CGG | + | chr4_4:40460964-40460983 | Msa0680830:intron | 55.0% | |
| ! | TTCAGTGGCGGAGCCCTTTA+TGG | + | chr4_4:40463198-40463217 | Msa0680830:intron | 55.0% |
| ! | TCAGTGGCGGAGCCCTTTAT+GGG | + | chr4_4:40463199-40463218 | Msa0680830:intron | 55.0% |
| ! | AGCCCTTTATGGGCTGAGGT+GGG | + | chr4_4:40463209-40463228 | Msa0680830:intron | 55.0% |
| !! | TAAATTTTGGGGGTGGGCCG+TGG | - | chr4_4:40463235-40463254 | None:intergenic | 55.0% |
| ! | TTCAGTGGCGGAGCCCTTTA+TGG | + | chr4_4:40463198-40463217 | Msa0680830:intron | 55.0% |
| ! | TCAGTGGCGGAGCCCTTTAT+GGG | + | chr4_4:40463199-40463218 | Msa0680830:intron | 55.0% |
| ! | AGCCCTTTATGGGCTGAGGT+GGG | + | chr4_4:40463209-40463228 | Msa0680830:intron | 55.0% |
| !! | TAAATTTTGGGGGTGGGCCG+TGG | - | chr4_4:40463235-40463254 | None:intergenic | 55.0% |
| GGGCCACTACATCACTTTGC+GGG | - | chr4_4:40463639-40463658 | None:intergenic | 55.0% | |
| GGGCCACTACATCACTTTGC+GGG | - | chr4_4:40463639-40463658 | None:intergenic | 55.0% | |
| ATGAGTGCTTGGCGCATTGC+TGG | + | chr4_4:40464022-40464041 | Msa0680830:CDS | 55.0% | |
| CACCGTGTCCGATGGAAGCT+TGG | + | chr4_4:40460614-40460633 | Msa0680830:CDS | 60.0% | |
| TCCTCTTACAAGGTGGCCGG+AGG | + | chr4_4:40460967-40460986 | Msa0680830:intron | 60.0% | |
| CCTCTTACAAGGTGGCCGGA+GGG | + | chr4_4:40460968-40460987 | Msa0680830:intron | 60.0% | |
| GTCGATCCGAGAGGCTCGAA+AGG | + | chr4_4:40462514-40462533 | Msa0680830:intron | 60.0% | |
| TAGGGGCCTTTCGAGCCTCT+CGG | - | chr4_4:40462523-40462542 | None:intergenic | 60.0% | |
| ! | GAGCCCTTTATGGGCTGAGG+TGG | + | chr4_4:40463208-40463227 | Msa0680830:intron | 60.0% |
| GGCCCACCTCAGCCCATAAA+GGG | - | chr4_4:40463214-40463233 | None:intergenic | 60.0% | |
| TGGCCCACCTCAGCCCATAA+AGG | - | chr4_4:40463215-40463234 | None:intergenic | 60.0% | |
| ! | TTATGGGCTGAGGTGGGCCA+CGG | + | chr4_4:40463215-40463234 | Msa0680830:intron | 60.0% |
| ! | GAGCCCTTTATGGGCTGAGG+TGG | + | chr4_4:40463208-40463227 | Msa0680830:intron | 60.0% |
| GGCCCACCTCAGCCCATAAA+GGG | - | chr4_4:40463214-40463233 | None:intergenic | 60.0% | |
| TGGCCCACCTCAGCCCATAA+AGG | - | chr4_4:40463215-40463234 | None:intergenic | 60.0% | |
| ! | TTATGGGCTGAGGTGGGCCA+CGG | + | chr4_4:40463215-40463234 | Msa0680830:intron | 60.0% |
| CGAAGGGTCACCGTGTCCGA+TGG | + | chr4_4:40460606-40460625 | Msa0680830:CDS | 65.0% | |
| CCCTCCGGCCACCTTGTAAG+AGG | - | chr4_4:40460971-40460990 | None:intergenic | 65.0% | |
| ! | GCGGAGCCCTTTATGGGCTG+AGG | + | chr4_4:40463205-40463224 | Msa0680830:intron | 65.0% |
| ! | GCGGAGCCCTTTATGGGCTG+AGG | + | chr4_4:40463205-40463224 | Msa0680830:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 40455910 | 40464576 | 40455910 | ID=Msa0680830;Name=Msa0680830 |
| chr4_4 | mRNA | 40455910 | 40464576 | 40455910 | ID=Msa0680830-mRNA-1;Parent=Msa0680830;Name=Msa0680830-mRNA-1;_AED=0.12;_eAED=0.12;_QI=14|0.88|0.9|1|0.77|0.7|10|411|611 |
| chr4_4 | exon | 40455910 | 40455983 | 40455910 | ID=Msa0680830-mRNA-1:exon:9572;Parent=Msa0680830-mRNA-1 |
| chr4_4 | exon | 40456675 | 40456889 | 40456675 | ID=Msa0680830-mRNA-1:exon:9573;Parent=Msa0680830-mRNA-1 |
| chr4_4 | exon | 40457222 | 40457454 | 40457222 | ID=Msa0680830-mRNA-1:exon:9574;Parent=Msa0680830-mRNA-1 |
| chr4_4 | exon | 40457718 | 40457925 | 40457718 | ID=Msa0680830-mRNA-1:exon:9575;Parent=Msa0680830-mRNA-1 |
| chr4_4 | exon | 40458189 | 40458564 | 40458189 | ID=Msa0680830-mRNA-1:exon:9576;Parent=Msa0680830-mRNA-1 |
| chr4_4 | exon | 40458888 | 40458995 | 40458888 | ID=Msa0680830-mRNA-1:exon:9577;Parent=Msa0680830-mRNA-1 |
| chr4_4 | exon | 40460035 | 40460235 | 40460035 | ID=Msa0680830-mRNA-1:exon:9578;Parent=Msa0680830-mRNA-1 |
| chr4_4 | exon | 40460567 | 40460662 | 40460567 | ID=Msa0680830-mRNA-1:exon:9579;Parent=Msa0680830-mRNA-1 |
| chr4_4 | exon | 40462220 | 40462393 | 40462220 | ID=Msa0680830-mRNA-1:exon:9580;Parent=Msa0680830-mRNA-1 |
| chr4_4 | exon | 40464001 | 40464576 | 40464001 | ID=Msa0680830-mRNA-1:exon:9581;Parent=Msa0680830-mRNA-1 |
| chr4_4 | five_prime_UTR | 40455910 | 40455923 | 40455910 | ID=Msa0680830-mRNA-1:five_prime_utr;Parent=Msa0680830-mRNA-1 |
| chr4_4 | CDS | 40455924 | 40455983 | 40455924 | ID=Msa0680830-mRNA-1:cds;Parent=Msa0680830-mRNA-1 |
| chr4_4 | CDS | 40456675 | 40456889 | 40456675 | ID=Msa0680830-mRNA-1:cds;Parent=Msa0680830-mRNA-1 |
| chr4_4 | CDS | 40457222 | 40457454 | 40457222 | ID=Msa0680830-mRNA-1:cds;Parent=Msa0680830-mRNA-1 |
| chr4_4 | CDS | 40457718 | 40457925 | 40457718 | ID=Msa0680830-mRNA-1:cds;Parent=Msa0680830-mRNA-1 |
| chr4_4 | CDS | 40458189 | 40458564 | 40458189 | ID=Msa0680830-mRNA-1:cds;Parent=Msa0680830-mRNA-1 |
| chr4_4 | CDS | 40458888 | 40458995 | 40458888 | ID=Msa0680830-mRNA-1:cds;Parent=Msa0680830-mRNA-1 |
| chr4_4 | CDS | 40460035 | 40460235 | 40460035 | ID=Msa0680830-mRNA-1:cds;Parent=Msa0680830-mRNA-1 |
| chr4_4 | CDS | 40460567 | 40460662 | 40460567 | ID=Msa0680830-mRNA-1:cds;Parent=Msa0680830-mRNA-1 |
| chr4_4 | CDS | 40462220 | 40462393 | 40462220 | ID=Msa0680830-mRNA-1:cds;Parent=Msa0680830-mRNA-1 |
| chr4_4 | CDS | 40464001 | 40464165 | 40464001 | ID=Msa0680830-mRNA-1:cds;Parent=Msa0680830-mRNA-1 |
| chr4_4 | three_prime_UTR | 40464166 | 40464576 | 40464166 | ID=Msa0680830-mRNA-1:three_prime_utr;Parent=Msa0680830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
