Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0584130 | XP_003606194.2 | 92.450 | 596 | 39 | 1 | 4 | 593 | 20 | 615 | 0.0 | 1119 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0584130 | sp|B8BHF1|GLO15_ORYSI | 53.589 | 599 | 265 | 5 | 4 | 589 | 20 | 618 | 0.0 | 676 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0002930 | Msa0584130 | 0.809296 | 2.029575e-50 | -8.615850e-47 |
Msa0007010 | Msa0584130 | 0.804199 | 2.422726e-49 | -8.615850e-47 |
Msa0022640 | Msa0584130 | 0.831907 | 1.278752e-55 | -8.615850e-47 |
Msa0103000 | Msa0584130 | 0.800116 | 1.676319e-48 | -8.615850e-47 |
Msa0106790 | Msa0584130 | 0.813348 | 2.678516e-51 | -8.615850e-47 |
Msa0118380 | Msa0584130 | 0.818466 | 1.931771e-52 | -8.615850e-47 |
Msa0118400 | Msa0584130 | 0.839734 | 1.326996e-57 | -8.615850e-47 |
Msa0142230 | Msa0584130 | 0.812814 | 3.508879e-51 | -8.615850e-47 |
Msa0147560 | Msa0584130 | 0.807817 | 4.198982e-50 | -8.615850e-47 |
Msa0161680 | Msa0584130 | 0.836789 | 7.614061e-57 | -8.615850e-47 |
Msa0183550 | Msa0584130 | 0.821384 | 4.155837e-53 | -8.615850e-47 |
Msa0203030 | Msa0584130 | 0.829514 | 4.932333e-55 | -8.615850e-47 |
Msa0235190 | Msa0584130 | 0.836534 | 8.847837e-57 | -8.615850e-47 |
Msa0408630 | Msa0584130 | 0.830268 | 3.231344e-55 | -8.615850e-47 |
Msa0414590 | Msa0584130 | 0.828179 | 1.037968e-54 | -8.615850e-47 |
Msa0419970 | Msa0584130 | 0.808138 | 3.587831e-50 | -8.615850e-47 |
Msa0452410 | Msa0584130 | 0.831075 | 2.050229e-55 | -8.615850e-47 |
Msa0459440 | Msa0584130 | 0.818502 | 1.895897e-52 | -8.615850e-47 |
Msa0242270 | Msa0584130 | 0.823492 | 1.345541e-53 | -8.615850e-47 |
Msa0273570 | Msa0584130 | 0.831870 | 1.306019e-55 | -8.615850e-47 |
Msa0273580 | Msa0584130 | 0.808592 | 2.871529e-50 | -8.615850e-47 |
Msa0313780 | Msa0584130 | 0.823418 | 1.399951e-53 | -8.615850e-47 |
Msa0313920 | Msa0584130 | 0.859069 | 5.336967e-63 | -8.615850e-47 |
Msa0322830 | Msa0584130 | 0.825867 | 3.708912e-54 | -8.615850e-47 |
Msa0322840 | Msa0584130 | 0.837769 | 4.273829e-57 | -8.615850e-47 |
Msa0323610 | Msa0584130 | 0.802010 | 6.870553e-49 | -8.615850e-47 |
Msa0329620 | Msa0584130 | 0.806150 | 9.457911e-50 | -8.615850e-47 |
Msa0352000 | Msa0584130 | 0.817838 | 2.678596e-52 | -8.615850e-47 |
Msa0352010 | Msa0584130 | 0.800634 | 1.314297e-48 | -8.615850e-47 |
Msa0363980 | Msa0584130 | 0.821524 | 3.857715e-53 | -8.615850e-47 |
Msa0496000 | Msa0584130 | 0.812280 | 4.589934e-51 | -8.615850e-47 |
Msa0506000 | Msa0584130 | 0.843287 | 1.537123e-58 | -8.615850e-47 |
Msa0580610 | Msa0584130 | 0.808160 | 3.550644e-50 | -8.615850e-47 |
Msa0584130 | Msa0601650 | 0.850815 | 1.330383e-60 | -8.615850e-47 |
Msa0584130 | Msa0629940 | 0.806287 | 8.852165e-50 | -8.615850e-47 |
Msa0584130 | Msa0641900 | 0.914848 | 1.183418e-84 | -8.615850e-47 |
Msa0584130 | Msa0649970 | 0.804653 | 1.948490e-49 | -8.615850e-47 |
Msa0584130 | Msa0668150 | 0.814449 | 1.532108e-51 | -8.615850e-47 |
Msa0584130 | Msa0680690 | 0.817148 | 3.833080e-52 | -8.615850e-47 |
Msa0584130 | Msa0680830 | 0.866317 | 3.115183e-65 | -8.615850e-47 |
Msa0584130 | Msa0682530 | 0.817551 | 3.110044e-52 | -8.615850e-47 |
Msa0584130 | Msa0784520 | 0.808596 | 2.865525e-50 | -8.615850e-47 |
Msa0584130 | Msa0812990 | 0.815905 | 7.275578e-52 | -8.615850e-47 |
Msa0584130 | Msa0815320 | 0.838413 | 2.919101e-57 | -8.615850e-47 |
Msa0584130 | Msa0818010 | 0.831068 | 2.058641e-55 | -8.615850e-47 |
Msa0584130 | Msa0853540 | 0.809912 | 1.496176e-50 | -8.615850e-47 |
Msa0584130 | Msa0858360 | 0.811440 | 6.994694e-51 | -8.615850e-47 |
Msa0584130 | Msa0865390 | 0.828413 | 9.113936e-55 | -8.615850e-47 |
Msa0584130 | Msa0870620 | 0.808777 | 2.621090e-50 | -8.615850e-47 |
Msa0584130 | Msa0905720 | 0.810752 | 9.857013e-51 | -8.615850e-47 |
Msa0584130 | Msa0909120 | 0.802368 | 5.799856e-49 | -8.615850e-47 |
Msa0584130 | Msa0912500 | 0.822053 | 2.910212e-53 | -8.615850e-47 |
Msa0584130 | Msa0956390 | 0.801038 | 1.086978e-48 | -8.615850e-47 |
Msa0584130 | Msa0957640 | 0.825657 | 4.158888e-54 | -8.615850e-47 |
Msa0584130 | Msa0991670 | 0.803990 | 2.677404e-49 | -8.615850e-47 |
Msa0584130 | Msa1006250 | 0.838083 | 3.550514e-57 | -8.615850e-47 |
Msa0584130 | Msa1009250 | 0.805822 | 1.108973e-49 | -8.615850e-47 |
Msa0584130 | Msa1009270 | 0.840184 | 1.013058e-57 | -8.615850e-47 |
Msa0584130 | Msa1020720 | 0.856900 | 2.352196e-62 | -8.615850e-47 |
Msa0584130 | Msa1027240 | 0.840380 | 9.005423e-58 | -8.615850e-47 |
Msa0584130 | Msa1027290 | 0.809215 | 2.112714e-50 | -8.615850e-47 |
Msa0584130 | Msa1034680 | 0.832777 | 7.789101e-56 | -8.615850e-47 |
Msa0584130 | Msa1060530 | 0.821302 | 4.340734e-53 | -8.615850e-47 |
Msa0584130 | Msa1070420 | 0.811648 | 6.302321e-51 | -8.615850e-47 |
Msa0584130 | Msa1131820 | 0.817251 | 3.633937e-52 | -8.615850e-47 |
Msa0584130 | Msa1139410 | 0.853347 | 2.538352e-61 | -8.615850e-47 |
Msa0584130 | Msa1198090 | 0.844683 | 6.494950e-59 | -8.615850e-47 |
Msa0584130 | Msa1248040 | 0.825409 | 4.761602e-54 | -8.615850e-47 |
Msa0584130 | Msa1288000 | 0.846521 | 2.061170e-59 | -8.615850e-47 |
Msa0584130 | Msa1308580 | 0.831617 | 1.507718e-55 | -8.615850e-47 |
Msa0584130 | Msa1308620 | 0.823775 | 1.154970e-53 | -8.615850e-47 |
Msa0584130 | Msa1315040 | 0.816620 | 5.033529e-52 | -8.615850e-47 |
Msa0584130 | Msa1324780 | 0.813100 | 3.037359e-51 | -8.615850e-47 |
Msa0584130 | Msa1423990 | 0.855588 | 5.705575e-62 | -8.615850e-47 |
Msa0584130 | Msa1424690 | 0.825003 | 5.938498e-54 | -8.615850e-47 |
Msa0584130 | Msa1444370 | 0.807390 | 5.174857e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0584130 | MtrunA17_Chr4g0026761 | 89.262 | 596 | 58 | 1 | 4 | 593 | 20 | 615 | 0.0 | 1095 |
Msa0584130 | MtrunA17_Chr7g0256371 | 79.933 | 593 | 111 | 2 | 4 | 590 | 29 | 619 | 0.0 | 976 |
Msa0584130 | MtrunA17_Chr7g0256411 | 79.461 | 594 | 115 | 2 | 4 | 591 | 51 | 643 | 0.0 | 971 |
Msa0584130 | MtrunA17_Chr7g0256391 | 78.752 | 593 | 120 | 1 | 4 | 590 | 20 | 612 | 0.0 | 959 |
Msa0584130 | MtrunA17_Chr4g0026811 | 93.202 | 456 | 25 | 1 | 1 | 450 | 3 | 458 | 0.0 | 847 |
Msa0584130 | MtrunA17_Chr8g0337081 | 62.876 | 598 | 212 | 3 | 4 | 591 | 20 | 617 | 0.0 | 735 |
Msa0584130 | MtrunA17_Chr8g0337101 | 58.333 | 600 | 239 | 4 | 4 | 592 | 56 | 655 | 0.0 | 724 |
Msa0584130 | MtrunA17_Chr4g0073231 | 31.639 | 610 | 391 | 8 | 4 | 589 | 17 | 624 | 4.24e-102 | 322 |
Msa0584130 | MtrunA17_Chr4g0026821 | 87.912 | 91 | 11 | 0 | 449 | 539 | 3 | 93 | 6.23e-53 | 176 |
Msa0584130 | MtrunA17_Chr2g0305431 | 33.977 | 259 | 167 | 1 | 4 | 258 | 17 | 275 | 2.32e-50 | 176 |
Msa0584130 | MtrunA17_Chr4g0026831 | 93.617 | 47 | 3 | 0 | 547 | 593 | 1 | 47 | 5.89e-26 | 100 |
Msa0584130 | MtrunA17_Chr2g0305451 | 30.556 | 216 | 142 | 3 | 382 | 589 | 2 | 217 | 9.14e-25 | 102 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0584130 | AT1G02205.4 | 53.719 | 605 | 265 | 4 | 4 | 593 | 21 | 625 | 0.0 | 670 |
Msa0584130 | AT1G02205.2 | 53.719 | 605 | 265 | 4 | 4 | 593 | 20 | 624 | 0.0 | 668 |
Msa0584130 | AT1G02205.3 | 53.279 | 610 | 265 | 4 | 4 | 593 | 20 | 629 | 0.0 | 665 |
Msa0584130 | AT1G02190.1 | 54.050 | 605 | 257 | 10 | 4 | 589 | 20 | 622 | 0.0 | 631 |
Msa0584130 | AT1G02190.2 | 54.077 | 601 | 259 | 9 | 4 | 589 | 20 | 618 | 0.0 | 630 |
Msa0584130 | AT2G37700.3 | 53.577 | 601 | 267 | 5 | 4 | 593 | 20 | 619 | 0.0 | 627 |
Msa0584130 | AT2G37700.1 | 53.000 | 600 | 263 | 5 | 4 | 593 | 20 | 610 | 0.0 | 621 |
Msa0584130 | AT2G37700.4 | 50.083 | 601 | 251 | 8 | 4 | 593 | 20 | 582 | 0.0 | 561 |
Msa0584130 | AT2G37700.2 | 55.066 | 454 | 196 | 3 | 4 | 450 | 20 | 472 | 1.98e-166 | 483 |
Msa0584130 | AT1G02205.1 | 50.110 | 453 | 214 | 3 | 153 | 593 | 8 | 460 | 4.19e-164 | 476 |
Msa0584130 | AT1G02205.5 | 47.354 | 378 | 187 | 3 | 228 | 593 | 8 | 385 | 3.24e-129 | 384 |
Msa0584130 | AT5G57800.1 | 32.623 | 610 | 384 | 9 | 2 | 585 | 15 | 623 | 4.95e-100 | 317 |
Find 123 sgRNAs with CRISPR-Local
Find 289 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTATATATGACTACATTTA+TGG | 0.133350 | 4_2:-3139642 | Msa0584130:CDS |
ATATCAATAAGCCAAATATT+TGG | 0.223478 | 4_2:-3135839 | Msa0584130:three_prime_UTR |
TTTGGAGGAAAATGAGAAAA+AGG | 0.243101 | 4_2:+3137378 | None:intergenic |
TATTAGTGCATCTATTTGTT+AGG | 0.257454 | 4_2:-3135889 | Msa0584130:three_prime_UTR |
CCAAACTTGTCTGATTAGTT+TGG | 0.262919 | 4_2:+3136182 | None:intergenic |
AAGTAGGAGAAGAGTTTCTT+AGG | 0.273284 | 4_2:+3140156 | None:intergenic |
TATTTGACATTGAGAAAGTA+TGG | 0.287267 | 4_2:-3136244 | Msa0584130:CDS |
AACATTCTGACGAATATATA+AGG | 0.292856 | 4_2:+3141115 | None:intergenic |
AGCATAGAGCACGTTGAAAA+AGG | 0.296954 | 4_2:+3139438 | None:intergenic |
TGTCGACTTGGTCGAATTCC+AGG | 0.311368 | 4_2:+3141020 | None:intergenic |
CCAACCCTCAAACATCTAAA+TGG | 0.316593 | 4_2:-3139479 | Msa0584130:CDS |
ACAACTTTAATCTTCAGATT+TGG | 0.323949 | 4_2:+3138900 | None:intergenic |
AATAGGTGACTGTATTATAT+AGG | 0.334955 | 4_2:-3138375 | Msa0584130:intron |
ACTCAGGGGCAAGTTTAATA+AGG | 0.340636 | 4_2:-3138811 | Msa0584130:CDS |
AGCACTTGATTGGTCCCTTT+GGG | 0.349623 | 4_2:+3138834 | None:intergenic |
CCAAACTAATCAGACAAGTT+TGG | 0.352229 | 4_2:-3136182 | Msa0584130:exon |
ATGAACATTCCATCCTTCTA+AGG | 0.364125 | 4_2:+3136283 | None:intergenic |
CAAGTTTAATAAGGTTGCTT+TGG | 0.369770 | 4_2:-3138802 | Msa0584130:CDS |
TAGCACTTGATTGGTCCCTT+TGG | 0.383431 | 4_2:+3138833 | None:intergenic |
TTAACCTTTGGAGTATTGAT+TGG | 0.387155 | 4_2:+3138292 | None:intergenic |
ATGAGTGCTTGGCGCATTGC+TGG | 0.389012 | 4_2:-3136317 | Msa0584130:CDS |
GCCCCTGAGTAGCACTTGAT+TGG | 0.390520 | 4_2:+3138824 | None:intergenic |
TGTATGTGAAATACTTCAAT+TGG | 0.395814 | 4_2:+3140130 | None:intergenic |
CGCTGCATCACACAAAATTT+AGG | 0.401705 | 4_2:-3139686 | Msa0584130:CDS |
TGTTTGAGGGTTGGAGGCTA+AGG | 0.409276 | 4_2:+3139488 | None:intergenic |
CAAGCACTCATGACTCTTGT+TGG | 0.415005 | 4_2:+3136329 | None:intergenic |
GGAATAGTTCATGCCTTAGA+AGG | 0.416100 | 4_2:-3136296 | Msa0584130:CDS |
CCATCTTTCAACTACGCTTA+GGG | 0.416116 | 4_2:-3139518 | Msa0584130:CDS |
CCATAAATGTAGTCATATAT+AGG | 0.417569 | 4_2:+3139642 | None:intergenic |
TCCATCTTTCAACTACGCTT+AGG | 0.422294 | 4_2:-3139519 | Msa0584130:CDS |
ATAGGTGACTGTATTATATA+GGG | 0.422701 | 4_2:-3138374 | Msa0584130:intron |
TATGCCAACATTTCAGCAAA+TGG | 0.424110 | 4_2:+3140309 | None:intergenic |
TGAACAATGTTGTCAACATT+GGG | 0.427233 | 4_2:+3140268 | None:intergenic |
ATTAGTGCATCTATTTGTTA+GGG | 0.435359 | 4_2:-3135888 | Msa0584130:three_prime_UTR |
CTGAAGATTAAAGTTGTAGA+TGG | 0.439460 | 4_2:-3138894 | Msa0584130:CDS |
ATGAACAATGTTGTCAACAT+TGG | 0.446199 | 4_2:+3140267 | None:intergenic |
ACTTTACGCAATATTTCCTA+TGG | 0.446705 | 4_2:-3140623 | Msa0584130:CDS |
CCTCCAAATAAAATGCGAAA+AGG | 0.450420 | 4_2:-3137363 | Msa0584130:CDS |
TATGGTTAGTTGGAGATGAA+TGG | 0.456856 | 4_2:-3137446 | Msa0584130:CDS |
GGACCAATCAAGTGCTACTC+AGG | 0.458366 | 4_2:-3138827 | Msa0584130:CDS |
CTTACAGCTCTCTTGCATGC+TGG | 0.459101 | 4_2:-3140562 | Msa0584130:CDS |
TGTGTTAAGTGCACCACATC+TGG | 0.460275 | 4_2:+3139558 | None:intergenic |
GGAATATGAGATAGTATGTT+GGG | 0.461460 | 4_2:+3141137 | None:intergenic |
GATTAGTTTGGAATCTTAAG+AGG | 0.464881 | 4_2:+3136194 | None:intergenic |
AGGTACCATTTAGATGTTTG+AGG | 0.465285 | 4_2:+3139474 | None:intergenic |
GAATGTTGCACAATCAGATA+TGG | 0.466050 | 4_2:-3141099 | Msa0584130:CDS |
CAGTGGAATTCTTGTACTAC+TGG | 0.467990 | 4_2:-3140537 | Msa0584130:CDS |
CCCTAAGCGTAGTTGAAAGA+TGG | 0.468595 | 4_2:+3139518 | None:intergenic |
CGCCATGTCCAATGGAAGCT+TGG | 0.474471 | 4_2:-3138323 | Msa0584130:CDS |
ACATTCTGACGAATATATAA+GGG | 0.475209 | 4_2:+3141116 | None:intergenic |
GCAGTAGGACTTATCATTGA+TGG | 0.477322 | 4_2:+3137321 | None:intergenic |
GGTACCATTTAGATGTTTGA+GGG | 0.478371 | 4_2:+3139475 | None:intergenic |
TCACGCTACCAAACTGCTAA+AGG | 0.482745 | 4_2:-3141067 | Msa0584130:CDS |
ACCACATCTGGTGATTCCTC+TGG | 0.483089 | 4_2:+3139570 | None:intergenic |
AATTGGTTTCTCTGTCGACT+TGG | 0.483201 | 4_2:+3141008 | None:intergenic |
ATCTAACAGATATGGTTAGT+TGG | 0.485488 | 4_2:-3137456 | Msa0584130:intron |
CCATTTAGATGTTTGAGGGT+TGG | 0.485770 | 4_2:+3139479 | None:intergenic |
TTTAGATGTTTGAGGGTTGG+AGG | 0.486191 | 4_2:+3139482 | None:intergenic |
ATACTTCAATTGGGGAAAGT+AGG | 0.487785 | 4_2:+3140140 | None:intergenic |
TGCTTGTGACTTGGATTAGT+GGG | 0.489293 | 4_2:-3139419 | Msa0584130:CDS |
TTCCAACCTCACACGAATGC+AGG | 0.490503 | 4_2:+3137289 | None:intergenic |
CGTGCTCTATGCTTGTGACT+TGG | 0.492557 | 4_2:-3139428 | Msa0584130:CDS |
ATGCTTGTGACTTGGATTAG+TGG | 0.496658 | 4_2:-3139420 | Msa0584130:CDS |
AAGATCTCAAGCTGCAGTGT+TGG | 0.498853 | 4_2:-3139365 | Msa0584130:CDS |
ATGGTTAGTTGGAGATGAAT+GGG | 0.501106 | 4_2:-3137445 | Msa0584130:CDS |
GAAGTTACTTTCTAAAACAA+TGG | 0.502211 | 4_2:+3139392 | None:intergenic |
AGTTTGGAATCTTAAGAGGT+AGG | 0.503572 | 4_2:+3136198 | None:intergenic |
GGGAATATGAGATAGTATGT+TGG | 0.504673 | 4_2:+3141136 | None:intergenic |
TGATAGAGCCAAGCTTCCAT+TGG | 0.508550 | 4_2:+3138315 | None:intergenic |
AAGAATTGTTGACAAAGGCC+TGG | 0.510050 | 4_2:-3141038 | Msa0584130:CDS |
TCGTTTGTGGCTGCACTGTA+TGG | 0.516902 | 4_2:-3140237 | Msa0584130:CDS |
CAACAAGAGTCATGAGTGCT+TGG | 0.516934 | 4_2:-3136328 | Msa0584130:CDS |
GCAGCATAAAGCATTAGTAA+TGG | 0.519657 | 4_2:+3138779 | None:intergenic |
GTATGTGAAATACTTCAATT+GGG | 0.520031 | 4_2:+3140131 | None:intergenic |
TTGAAGAATGATGGTGAGAA+TGG | 0.522722 | 4_2:+3140473 | None:intergenic |
GGAGTAAAGGTGATAAGTCT+AGG | 0.524556 | 4_2:-3139142 | Msa0584130:CDS |
AGCTGAAAGAGCTTGAACGA+AGG | 0.524659 | 4_2:-3138348 | Msa0584130:CDS |
CGAAGGGTCGCCATGTCCAA+TGG | 0.526318 | 4_2:-3138331 | Msa0584130:CDS |
AATAAGCCAAATATTTGGCA+TGG | 0.526425 | 4_2:-3135834 | Msa0584130:three_prime_UTR |
TTATCATTGATGGTGTATAG+TGG | 0.533673 | 4_2:+3137331 | None:intergenic |
TGTTCTCCACCATTGTAAGT+TGG | 0.536824 | 4_2:+3140597 | None:intergenic |
ACTGCGCAGTTTATATTGAA+AGG | 0.537435 | 4_2:-3138926 | Msa0584130:CDS |
CTATGGCTGCCAACTTACAA+TGG | 0.545118 | 4_2:-3140606 | Msa0584130:CDS |
TAGTTCATGCCTTAGAAGGA+TGG | 0.550562 | 4_2:-3136292 | Msa0584130:CDS |
AAGTCGACAGAGAAACCAAT+TGG | 0.553427 | 4_2:-3141006 | Msa0584130:intron |
TGCTTAACAACATTCCCAAA+GGG | 0.556459 | 4_2:-3138848 | Msa0584130:CDS |
ATTGTCACTGAGCCTATCAC+TGG | 0.557450 | 4_2:-3140451 | Msa0584130:intron |
GGCTGATTTAAGTGGAGTAA+AGG | 0.558217 | 4_2:-3139155 | Msa0584130:CDS |
ACATCCATTTGCTGAAATGT+TGG | 0.559199 | 4_2:-3140313 | Msa0584130:CDS |
GAGCAAATGCAAGCATCAGA+AGG | 0.559545 | 4_2:-3137414 | Msa0584130:CDS |
GCTGAAAGAGCTTGAACGAA+GGG | 0.563864 | 4_2:-3138347 | Msa0584130:CDS |
AGCTTCATATGTAGCATCTG+AGG | 0.581755 | 4_2:+3139605 | None:intergenic |
CAGTGACAATTGAAGAATGA+TGG | 0.584374 | 4_2:+3140464 | None:intergenic |
ATTTGACATTGAGAAAGTAT+GGG | 0.587113 | 4_2:-3136243 | Msa0584130:CDS |
CATTGTAAGTTGGCAGCCAT+AGG | 0.587199 | 4_2:+3140607 | None:intergenic |
CAGTAGTACAAGAATTCCAC+TGG | 0.588431 | 4_2:+3140538 | None:intergenic |
TGGCTTATTGATATAAAACA+TGG | 0.590486 | 4_2:+3135848 | None:intergenic |
GACCAATCAAGTGCTACTCA+GGG | 0.596465 | 4_2:-3138826 | Msa0584130:CDS |
ATATGCTATGAGCAATCCAC+GGG | 0.601636 | 4_2:+3141185 | None:intergenic |
AATGGTACCTCAATTTAATG+TGG | 0.603244 | 4_2:-3139461 | Msa0584130:CDS |
AGTTCGTGATTCTAAGCCCG+TGG | 0.603498 | 4_2:-3141201 | Msa0584130:CDS |
ATAATGATGGCTGATTTAAG+TGG | 0.604119 | 4_2:-3139163 | Msa0584130:CDS |
TCTCTTGCATGCTGGACCAG+TGG | 0.604144 | 4_2:-3140554 | Msa0584130:CDS |
AAAAGAAGAATTGTTGACAA+AGG | 0.612342 | 4_2:-3141043 | Msa0584130:CDS |
ATCACCAATCAATACTCCAA+AGG | 0.614842 | 4_2:-3138296 | Msa0584130:intron |
GATTGAAGAGACAATAATGA+TGG | 0.615276 | 4_2:-3139176 | Msa0584130:CDS |
TTACAATGGTGGAGAACAGA+TGG | 0.615918 | 4_2:-3140592 | Msa0584130:CDS |
AGCCAAGCTTCCATTGGACA+TGG | 0.622774 | 4_2:+3138321 | None:intergenic |
TGCAGGTTTATGACTGCAGT+AGG | 0.623460 | 4_2:+3137306 | None:intergenic |
ACCAGAGGAATCACCAGATG+TGG | 0.626932 | 4_2:-3139571 | Msa0584130:CDS |
GGATGGAATGTTCATGAGTG+TGG | 0.632339 | 4_2:-3136275 | Msa0584130:CDS |
TGGCTGCCAACTTACAATGG+TGG | 0.632530 | 4_2:-3140603 | Msa0584130:CDS |
TCTTAAGAGGTAGGTAACCA+TGG | 0.633958 | 4_2:+3136207 | None:intergenic |
CATAAACCTGCATTCGTGTG+AGG | 0.635395 | 4_2:-3137295 | Msa0584130:intron |
GTGCTTAACAACATTCCCAA+AGG | 0.636164 | 4_2:-3138849 | Msa0584130:CDS |
AGCAAATGCAAGCATCAGAA+GGG | 0.638426 | 4_2:-3137413 | Msa0584130:CDS |
TATATGCTATGAGCAATCCA+CGG | 0.638673 | 4_2:+3141184 | None:intergenic |
TCATTGATGGTGTATAGTGG+TGG | 0.657410 | 4_2:+3137334 | None:intergenic |
TGGGAAGCAAGTATTCGCCA+TGG | 0.674366 | 4_2:-3136224 | Msa0584130:CDS |
TGACTACATTTATGGTACTG+TGG | 0.682689 | 4_2:-3139634 | Msa0584130:CDS |
ACCAATCAAGTGCTACTCAG+GGG | 0.695886 | 4_2:-3138825 | Msa0584130:CDS |
TATGTGAAATACTTCAATTG+GGG | 0.721848 | 4_2:+3140132 | None:intergenic |
AGCTTGTGTGAAGAGACCAG+AGG | 0.773132 | 4_2:-3139586 | Msa0584130:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTATTTTTTTATTTTTTTA+TGG | - | chr4_2:3136970-3136989 | Msa0584130:intron | 0.0% |
!! | TATATATATATATATATATA+TGG | - | chr4_2:3139141-3139160 | Msa0584130:CDS | 0.0% |
!! | ATATATATATATATATATAT+GGG | - | chr4_2:3139142-3139161 | Msa0584130:CDS | 0.0% |
!! | TATATATATATATATATATA+GGG | + | chr4_2:3139141-3139160 | None:intergenic | 0.0% |
!! | ATATATATATATATATATAT+AGG | + | chr4_2:3139142-3139161 | None:intergenic | 0.0% |
!! | TCTTTAATTGATAAATAAAT+CGG | + | chr4_2:3136146-3136165 | None:intergenic | 10.0% |
!!! | TTAATTTTTCCAATTATTTT+AGG | - | chr4_2:3136890-3136909 | Msa0584130:intron | 10.0% |
!!! | TAATTTTTCCAATTATTTTA+GGG | - | chr4_2:3136891-3136910 | Msa0584130:intron | 10.0% |
!!! | AAAGTTTAATTTTATTCTAA+TGG | - | chr4_2:3138552-3138571 | Msa0584130:intron | 10.0% |
!! | CCTATTAATTATAATCAATT+GGG | + | chr4_2:3136021-3136040 | None:intergenic | 15.0% |
!! | TCCTATTAATTATAATCAAT+TGG | + | chr4_2:3136022-3136041 | None:intergenic | 15.0% |
!! | GATTATAATTAATAGGAATT+AGG | - | chr4_2:3136025-3136044 | Msa0584130:three_prime_UTR | 15.0% |
!! | ACAATAAGTTTCTTATATTA+GGG | + | chr4_2:3136598-3136617 | None:intergenic | 15.0% |
!! | AACAATAAGTTTCTTATATT+AGG | + | chr4_2:3136599-3136618 | None:intergenic | 15.0% |
!! | TAATATAAGAAACTTATTGT+TGG | - | chr4_2:3136598-3136617 | Msa0584130:intron | 15.0% |
!!! | AATTTTTCCAATTATTTTAG+GGG | - | chr4_2:3136892-3136911 | Msa0584130:intron | 15.0% |
!!! | TTTTTTATGGTGTTTATTTT+CGG | - | chr4_2:3136983-3137002 | Msa0584130:intron | 15.0% |
!!! | TTCTTTATTGCATATTTTTA+TGG | - | chr4_2:3137192-3137211 | Msa0584130:intron | 15.0% |
!!! | ATTCTTCTTAATACAATTTT+TGG | + | chr4_2:3138442-3138461 | None:intergenic | 15.0% |
!!! | TTTATTTAATTTGAAATCAG+AGG | - | chr4_2:3138989-3139008 | Msa0584130:intron | 15.0% |
!!! | TTATTTAATTTGAAATCAGA+GGG | - | chr4_2:3138990-3139009 | Msa0584130:intron | 15.0% |
!! | ATATATATATAACAAAGAAG+AGG | + | chr4_2:3139132-3139151 | None:intergenic | 15.0% |
!!! | AATCTTATCCTTTTTTTTTT+GGG | - | chr4_2:3139934-3139953 | Msa0584130:intron | 15.0% |
!!! | ATAGCATATACTCTTTTATA+TGG | - | chr4_2:3135792-3135811 | Msa0584130:three_prime_UTR | 20.0% |
!!! | TAGCATATACTCTTTTATAT+GGG | - | chr4_2:3135793-3135812 | Msa0584130:three_prime_UTR | 20.0% |
!! | TAAAGCCAAAATTGAAATTT+AGG | + | chr4_2:3135985-3136004 | None:intergenic | 20.0% |
!! | CCCAATTGATTATAATTAAT+AGG | - | chr4_2:3136018-3136037 | Msa0584130:three_prime_UTR | 20.0% |
!!! | TAATTGTGTATGATTTGTTA+TGG | - | chr4_2:3136101-3136120 | Msa0584130:three_prime_UTR | 20.0% |
!! | AAAGTTCCAATACAAATAAA+GGG | + | chr4_2:3136550-3136569 | None:intergenic | 20.0% |
!! | AAAAGTTCCAATACAAATAA+AGG | + | chr4_2:3136551-3136570 | None:intergenic | 20.0% |
!!! | TTTTTATGGTGTTTATTTTC+GGG | - | chr4_2:3136984-3137003 | Msa0584130:intron | 20.0% |
!! | AAACAGATAATACAAACTAA+AGG | + | chr4_2:3137030-3137049 | None:intergenic | 20.0% |
!! | ATATAAAGTTCGAAATTCAT+GGG | + | chr4_2:3137662-3137681 | None:intergenic | 20.0% |
!! | AATATAAAGTTCGAAATTCA+TGG | + | chr4_2:3137663-3137682 | None:intergenic | 20.0% |
!!! | TTTTATTCTCTATATCCATA+AGG | - | chr4_2:3137683-3137702 | Msa0584130:intron | 20.0% |
!!! | TGTATATAAAGCATTAGTAA+TGG | + | chr4_2:3138290-3138309 | None:intergenic | 20.0% |
!!! | ATAATGCAATATTAGCTTAA+GGG | + | chr4_2:3138326-3138345 | None:intergenic | 20.0% |
!!! | AATAATGCAATATTAGCTTA+AGG | + | chr4_2:3138327-3138346 | None:intergenic | 20.0% |
!! | TGAAACAATAAATTAACCTT+TGG | + | chr4_2:3138686-3138705 | None:intergenic | 20.0% |
!! | CAAAATATTAAACTATGAGA+AGG | - | chr4_2:3138768-3138787 | Msa0584130:CDS | 20.0% |
!! | AAAACACAAAAACAAGAAAA+TGG | + | chr4_2:3139050-3139069 | None:intergenic | 20.0% |
!! | AAGTTATATAAAAAACACCA+TGG | - | chr4_2:3139269-3139288 | Msa0584130:intron | 20.0% |
!! | TGTTAGAAATATGAAGTAAT+AGG | + | chr4_2:3139481-3139500 | None:intergenic | 20.0% |
!! | CATTATAAATCTAACAGATA+TGG | - | chr4_2:3139499-3139518 | Msa0584130:CDS | 20.0% |
!!! | TTTTGCCCTATAATTTAAAA+AGG | - | chr4_2:3139728-3139747 | Msa0584130:intron | 20.0% |
!!! | TTTAATTTAGCAAGCAATAT+GGG | - | chr4_2:3139901-3139920 | Msa0584130:intron | 20.0% |
!!! | CAATCTTATCCTTTTTTTTT+TGG | - | chr4_2:3139933-3139952 | Msa0584130:intron | 20.0% |
!!! | ATCTTATCCTTTTTTTTTTG+GGG | - | chr4_2:3139935-3139954 | Msa0584130:intron | 20.0% |
!!! | ATTAAATTGTTGACTTGATT+TGG | - | chr4_2:3140084-3140103 | Msa0584130:intron | 20.0% |
!!! | TTAAATTGTTGACTTGATTT+GGG | - | chr4_2:3140085-3140104 | Msa0584130:intron | 20.0% |
!!! | ATTTTTAGTGTTGCAAAAAA+AGG | - | chr4_2:3140143-3140162 | Msa0584130:CDS | 20.0% |
!! | TTTGTTGAAATGTTATTGAA+TGG | + | chr4_2:3140207-3140226 | None:intergenic | 20.0% |
!!! | TACAGAATCTTTTTTTTTTG+TGG | - | chr4_2:3140235-3140254 | Msa0584130:CDS | 20.0% |
!!! | CTTATATTTTAAGTGAAAAC+AGG | + | chr4_2:3140867-3140886 | None:intergenic | 20.0% |
!! | ATATCAATAAGCCAAATATT+TGG | - | chr4_2:3141124-3141143 | Msa0584130:CDS | 20.0% |
! | ACATTCTGACGAATATATAA+GGG | + | chr4_2:3135850-3135869 | None:intergenic | 25.0% |
! | AACATTCTGACGAATATATA+AGG | + | chr4_2:3135851-3135870 | None:intergenic | 25.0% |
! | AAAAGAAGAATTGTTGACAA+AGG | - | chr4_2:3135920-3135939 | Msa0584130:three_prime_UTR | 25.0% |
! | ATTGAAATTTAGGAACCAAT+TGG | + | chr4_2:3135975-3135994 | None:intergenic | 25.0% |
!! | TGGTTCCTAAATTTCAATTT+TGG | - | chr4_2:3135977-3135996 | Msa0584130:intron | 25.0% |
!!! | CTTTTTCCCTTTATTTGTAT+TGG | - | chr4_2:3136541-3136560 | Msa0584130:intron | 25.0% |
! | GGTTTACGAAAAATGTATAA+AGG | + | chr4_2:3136577-3136596 | None:intergenic | 25.0% |
!!! | ATCGATTTTATGAACAACAT+GGG | - | chr4_2:3136762-3136781 | Msa0584130:intron | 25.0% |
! | TATGTGAAATACTTCAATTG+GGG | + | chr4_2:3136834-3136853 | None:intergenic | 25.0% |
! | GTATGTGAAATACTTCAATT+GGG | + | chr4_2:3136835-3136854 | None:intergenic | 25.0% |
! | TGTATGTGAAATACTTCAAT+TGG | + | chr4_2:3136836-3136855 | None:intergenic | 25.0% |
!!! | CATACAAAGTTTGATTTTAC+AGG | - | chr4_2:3137247-3137266 | Msa0584130:intron | 25.0% |
! | CCATAAATGTAGTCATATAT+AGG | + | chr4_2:3137324-3137343 | None:intergenic | 25.0% |
! | CCTATATATGACTACATTTA+TGG | - | chr4_2:3137321-3137340 | Msa0584130:CDS | 25.0% |
!!! | GAAGTTACTTTCTAAAACAA+TGG | + | chr4_2:3137574-3137593 | None:intergenic | 25.0% |
!!! | CATACTTGTGTTTTAAATCT+TGG | + | chr4_2:3137630-3137649 | None:intergenic | 25.0% |
!! | ACGATTTTATCACAAAACTT+TGG | - | chr4_2:3137890-3137909 | Msa0584130:intron | 25.0% |
! | TGTATATATGTGTAACATTG+AGG | - | chr4_2:3137959-3137978 | Msa0584130:intron | 25.0% |
! | GTATATATGTGTAACATTGA+GGG | - | chr4_2:3137960-3137979 | Msa0584130:intron | 25.0% |
! | ACAACTTTAATCTTCAGATT+TGG | + | chr4_2:3138066-3138085 | None:intergenic | 25.0% |
!! | TAATGCAATATTAGCTTAAG+GGG | + | chr4_2:3138325-3138344 | None:intergenic | 25.0% |
! | AACCATCTAACTGAATTAAA+TGG | - | chr4_2:3138389-3138408 | Msa0584130:intron | 25.0% |
! | ACCATCTAACTGAATTAAAT+GGG | - | chr4_2:3138390-3138409 | Msa0584130:intron | 25.0% |
!! | TGCATTAAACATTTTGTACT+TGG | + | chr4_2:3138525-3138544 | None:intergenic | 25.0% |
! | AATAGGTGACTGTATTATAT+AGG | - | chr4_2:3138588-3138607 | Msa0584130:intron | 25.0% |
! | ATAGGTGACTGTATTATATA+GGG | - | chr4_2:3138589-3138608 | Msa0584130:intron | 25.0% |
! | TTATTGTTTCAATCCTTCAT+TGG | - | chr4_2:3138695-3138714 | Msa0584130:intron | 25.0% |
! | TTATCTTCAAATTCCAATGA+AGG | + | chr4_2:3138711-3138730 | None:intergenic | 25.0% |
!! | ACACCAACTAATTTTTATGA+AGG | - | chr4_2:3139234-3139253 | Msa0584130:intron | 25.0% |
! | ACACCTTCATAAAAATTAGT+TGG | + | chr4_2:3139240-3139259 | None:intergenic | 25.0% |
! | TATATAAAAAACACCATGGA+TGG | - | chr4_2:3139273-3139292 | Msa0584130:intron | 25.0% |
!! | CTCGACCTTTTTAAATTATA+GGG | + | chr4_2:3139736-3139755 | None:intergenic | 25.0% |
!! | TCTCGACCTTTTTAAATTAT+AGG | + | chr4_2:3139737-3139756 | None:intergenic | 25.0% |
!! | GTTTAATTTAGCAAGCAATA+TGG | - | chr4_2:3139900-3139919 | Msa0584130:intron | 25.0% |
! | GAATAAACCCCAAAAAAAAA+AGG | + | chr4_2:3139945-3139964 | None:intergenic | 25.0% |
! | ATTACTCATACTTACCTATT+TGG | - | chr4_2:3139998-3140017 | Msa0584130:intron | 25.0% |
!!! | TAAATTGTTGACTTGATTTG+GGG | - | chr4_2:3140086-3140105 | Msa0584130:intron | 25.0% |
!!! | GAATCTTTTTTTTTTGTGGT+CGG | - | chr4_2:3140239-3140258 | Msa0584130:CDS | 25.0% |
!!! | AATCTTTTTTTTTTGTGGTC+GGG | - | chr4_2:3140240-3140259 | Msa0584130:CDS | 25.0% |
! | CTATTAATGTACAACAGAAT+TGG | - | chr4_2:3140608-3140627 | Msa0584130:CDS | 25.0% |
! | TATTTGACATTGAGAAAGTA+TGG | - | chr4_2:3140719-3140738 | Msa0584130:intron | 25.0% |
!! | ATTTGACATTGAGAAAGTAT+GGG | - | chr4_2:3140720-3140739 | Msa0584130:intron | 25.0% |
! | TATTAGTGCATCTATTTGTT+AGG | - | chr4_2:3141074-3141093 | Msa0584130:CDS | 25.0% |
!! | ATTAGTGCATCTATTTGTTA+GGG | - | chr4_2:3141075-3141094 | Msa0584130:CDS | 25.0% |
! | TGGCTTATTGATATAAAACA+TGG | + | chr4_2:3141118-3141137 | None:intergenic | 25.0% |
! | CATATACTCTTTTATATGGG+TGG | - | chr4_2:3135796-3135815 | Msa0584130:three_prime_UTR | 30.0% |
GGAATATGAGATAGTATGTT+GGG | + | chr4_2:3135829-3135848 | None:intergenic | 30.0% | |
! | TTCTTTTTCCTTTAGCAGTT+TGG | + | chr4_2:3135907-3135926 | None:intergenic | 30.0% |
! | TTTTATTGTGTGACATTTGC+AGG | - | chr4_2:3136279-3136298 | Msa0584130:CDS | 30.0% |
TTTATTGTGTGACATTTGCA+GGG | - | chr4_2:3136280-3136299 | Msa0584130:CDS | 30.0% | |
ACTTTACGCAATATTTCCTA+TGG | - | chr4_2:3136340-3136359 | Msa0584130:CDS | 30.0% | |
AAAAAGTTCATACCAGTGAT+AGG | + | chr4_2:3136527-3136546 | None:intergenic | 30.0% | |
!! | AAACTTATTGTTGGTGTTGT+TGG | - | chr4_2:3136607-3136626 | Msa0584130:intron | 30.0% |
!!! | TTGTTGGTTTTTTATGACAG+CGG | - | chr4_2:3136623-3136642 | Msa0584130:intron | 30.0% |
TGAACAATGTTGTCAACATT+GGG | + | chr4_2:3136698-3136717 | None:intergenic | 30.0% | |
ATGAACAATGTTGTCAACAT+TGG | + | chr4_2:3136699-3136718 | None:intergenic | 30.0% | |
GTTCATGAAAAAATCGTTTG+TGG | - | chr4_2:3136713-3136732 | Msa0584130:intron | 30.0% | |
!!! | CATCGATTTTATGAACAACA+TGG | - | chr4_2:3136761-3136780 | Msa0584130:intron | 30.0% |
GTTTGTATTATCTGTTTCAC+CGG | - | chr4_2:3137033-3137052 | Msa0584130:intron | 30.0% | |
AATGGTACCTCAATTTAATG+TGG | - | chr4_2:3137502-3137521 | Msa0584130:intron | 30.0% | |
AAAAAGGCCACATTAAATTG+AGG | + | chr4_2:3137512-3137531 | None:intergenic | 30.0% | |
GATTGAAGAGACAATAATGA+TGG | - | chr4_2:3137787-3137806 | Msa0584130:intron | 30.0% | |
! | ATAATGATGGCTGATTTAAG+TGG | - | chr4_2:3137800-3137819 | Msa0584130:intron | 30.0% |
ATGAAAGAGATGAATTTACC+TGG | + | chr4_2:3137856-3137875 | None:intergenic | 30.0% | |
! | ACATTGAGGGTTTTCAAATT+TGG | - | chr4_2:3137973-3137992 | Msa0584130:intron | 30.0% |
! | CATTGAGGGTTTTCAAATTT+GGG | - | chr4_2:3137974-3137993 | Msa0584130:intron | 30.0% |
CTGAAGATTAAAGTTGTAGA+TGG | - | chr4_2:3138069-3138088 | Msa0584130:intron | 30.0% | |
CAAGTTTAATAAGGTTGCTT+TGG | - | chr4_2:3138161-3138180 | Msa0584130:intron | 30.0% | |
TTTATGCTGCAAAAATGTAC+AGG | - | chr4_2:3138197-3138216 | Msa0584130:intron | 30.0% | |
AAGCATTAGTAATGGCTTAA+GGG | + | chr4_2:3138239-3138258 | None:intergenic | 30.0% | |
! | AAAGCATTAGTAATGGCTTA+AGG | + | chr4_2:3138240-3138259 | None:intergenic | 30.0% |
TTAAGCCATTACTAATGCTT+TGG | - | chr4_2:3138239-3138258 | Msa0584130:intron | 30.0% | |
AAAGCAACCTTATTAGCTAA+TGG | + | chr4_2:3138265-3138284 | None:intergenic | 30.0% | |
ATTAGCTAATAAGGTTGCTT+TGG | - | chr4_2:3138264-3138283 | Msa0584130:intron | 30.0% | |
GTTAGATGGTTACTACAATA+GGG | + | chr4_2:3138380-3138399 | None:intergenic | 30.0% | |
AGTTAGATGGTTACTACAAT+AGG | + | chr4_2:3138381-3138400 | None:intergenic | 30.0% | |
TCCCATTTAATTCAGTTAGA+TGG | + | chr4_2:3138394-3138413 | None:intergenic | 30.0% | |
ATGGAGAGTAAATTGCAAAT+AGG | - | chr4_2:3138571-3138590 | Msa0584130:intron | 30.0% | |
!! | TTAACCTTTGGAGTATTGAT+TGG | + | chr4_2:3138674-3138693 | None:intergenic | 30.0% |
!! | TTTAATTTGAAATCAGAGGG+AGG | - | chr4_2:3138993-3139012 | Msa0584130:intron | 30.0% |
TATATATATATGGGTCTTGC+TGG | - | chr4_2:3139153-3139172 | Msa0584130:CDS | 30.0% | |
ATCTAACAGATATGGTTAGT+TGG | - | chr4_2:3139507-3139526 | Msa0584130:CDS | 30.0% | |
TTTGGAGGAAAATGAGAAAA+AGG | + | chr4_2:3139588-3139607 | None:intergenic | 30.0% | |
! | CAACCTTTTCGCATTTTATT+TGG | + | chr4_2:3139606-3139625 | None:intergenic | 30.0% |
!! | TTATCATTGATGGTGTATAG+TGG | + | chr4_2:3139635-3139654 | None:intergenic | 30.0% |
!!! | CCCATTTGTTTTTTTGTTAG+GGG | + | chr4_2:3139836-3139855 | None:intergenic | 30.0% |
CCCCTAACAAAAAAACAAAT+GGG | - | chr4_2:3139833-3139852 | Msa0584130:intron | 30.0% | |
!!! | GCCCATTTGTTTTTTTGTTA+GGG | + | chr4_2:3139837-3139856 | None:intergenic | 30.0% |
!!! | AGCCCATTTGTTTTTTTGTT+AGG | + | chr4_2:3139838-3139857 | None:intergenic | 30.0% |
!! | AAGCCAACCTATTTGTTATT+GGG | - | chr4_2:3139863-3139882 | Msa0584130:intron | 30.0% |
CCAATCATATTTCACCAAAT+AGG | + | chr4_2:3140015-3140034 | None:intergenic | 30.0% | |
! | CCTATTTGGTGAAATATGAT+TGG | - | chr4_2:3140012-3140031 | Msa0584130:intron | 30.0% |
!!! | ATCTTTTTTTTTTGTGGTCG+GGG | - | chr4_2:3140241-3140260 | Msa0584130:CDS | 30.0% |
GATATAAACCTTCGATTCAA+TGG | + | chr4_2:3140286-3140305 | None:intergenic | 30.0% | |
!! | GATTAGTTTGGAATCTTAAG+AGG | + | chr4_2:3140772-3140791 | None:intergenic | 30.0% |
AATAAGCCAAATATTTGGCA+TGG | - | chr4_2:3141129-3141148 | Msa0584130:CDS | 30.0% | |
GAAAAACCATGCCAAATATT+TGG | + | chr4_2:3141138-3141157 | None:intergenic | 30.0% | |
TATATGCTATGAGCAATCCA+CGG | + | chr4_2:3135782-3135801 | None:intergenic | 35.0% | |
GGGAATATGAGATAGTATGT+TGG | + | chr4_2:3135830-3135849 | None:intergenic | 35.0% | |
GAATGTTGCACAATCAGATA+TGG | - | chr4_2:3135864-3135883 | Msa0584130:three_prime_UTR | 35.0% | |
! | TTGAAGAATGATGGTGAGAA+TGG | + | chr4_2:3136493-3136512 | None:intergenic | 35.0% |
CAGTGACAATTGAAGAATGA+TGG | + | chr4_2:3136502-3136521 | None:intergenic | 35.0% | |
! | ACATCCATTTGCTGAAATGT+TGG | - | chr4_2:3136650-3136669 | Msa0584130:intron | 35.0% |
TATGCCAACATTTCAGCAAA+TGG | + | chr4_2:3136657-3136676 | None:intergenic | 35.0% | |
AAGTAGGAGAAGAGTTTCTT+AGG | + | chr4_2:3136810-3136829 | None:intergenic | 35.0% | |
ATACTTCAATTGGGGAAAGT+AGG | + | chr4_2:3136826-3136845 | None:intergenic | 35.0% | |
GTTGTAATGCAAACTTACGA+TGG | + | chr4_2:3136861-3136880 | None:intergenic | 35.0% | |
!!! | TTCCAATTATTTTAGGGGTG+TGG | - | chr4_2:3136897-3136916 | Msa0584130:intron | 35.0% |
!! | AAACTAAAGGTACCCTATGT+AGG | + | chr4_2:3137017-3137036 | None:intergenic | 35.0% |
TGACTACATTTATGGTACTG+TGG | - | chr4_2:3137329-3137348 | Msa0584130:CDS | 35.0% | |
GGTACCATTTAGATGTTTGA+GGG | + | chr4_2:3137491-3137510 | None:intergenic | 35.0% | |
AGGTACCATTTAGATGTTTG+AGG | + | chr4_2:3137492-3137511 | None:intergenic | 35.0% | |
!! | GTTGTTGCTTGTTATCCTTA+TGG | + | chr4_2:3137701-3137720 | None:intergenic | 35.0% |
ACAAAAAGCGAGAAACCAAA+CGG | + | chr4_2:3137726-3137745 | None:intergenic | 35.0% | |
!! | AAGTCTAGGACTTTTAAACC+AGG | - | chr4_2:3137835-3137854 | Msa0584130:intron | 35.0% |
ACTGCGCAGTTTATATTGAA+AGG | - | chr4_2:3138037-3138056 | Msa0584130:intron | 35.0% | |
TGCTTAACAACATTCCCAAA+GGG | - | chr4_2:3138115-3138134 | Msa0584130:intron | 35.0% | |
! | GCAGCATAAAGCATTAGTAA+TGG | + | chr4_2:3138187-3138206 | None:intergenic | 35.0% |
! | AATGGCCAAAGCATTAGTAA+TGG | + | chr4_2:3138247-3138266 | None:intergenic | 35.0% |
ATCACCAATCAATACTCCAA+AGG | - | chr4_2:3138667-3138686 | Msa0584130:intron | 35.0% | |
CACAAAAACAAGAAAATGGC+CGG | + | chr4_2:3139046-3139065 | None:intergenic | 35.0% | |
! | TATGGTTAGTTGGAGATGAA+TGG | - | chr4_2:3139517-3139536 | Msa0584130:CDS | 35.0% |
! | ATGGTTAGTTGGAGATGAAT+GGG | - | chr4_2:3139518-3139537 | Msa0584130:CDS | 35.0% |
!! | CCTTTTCGCATTTTATTTGG+AGG | + | chr4_2:3139603-3139622 | None:intergenic | 35.0% |
CCTCCAAATAAAATGCGAAA+AGG | - | chr4_2:3139600-3139619 | Msa0584130:CDS | 35.0% | |
GATAGAACTGTCAAATGAGA+TGG | - | chr4_2:3139788-3139807 | Msa0584130:intron | 35.0% | |
!!! | TTTTTTTGTTAGGGGCCTTT+CGG | + | chr4_2:3139828-3139847 | None:intergenic | 35.0% |
GCCCCTAACAAAAAAACAAA+TGG | - | chr4_2:3139832-3139851 | Msa0584130:intron | 35.0% | |
!! | CAAGCCAACCTATTTGTTAT+TGG | - | chr4_2:3139862-3139881 | Msa0584130:intron | 35.0% |
CATCCCAATAACAAATAGGT+TGG | + | chr4_2:3139869-3139888 | None:intergenic | 35.0% | |
TGTGCATCCCAATAACAAAT+AGG | + | chr4_2:3139873-3139892 | None:intergenic | 35.0% | |
! | AGCAAGCAATATGGGTTAAT+AGG | - | chr4_2:3139909-3139928 | Msa0584130:intron | 35.0% |
!! | TTTGGGGTACTACTTTTACT+CGG | - | chr4_2:3140102-3140121 | Msa0584130:intron | 35.0% |
TTACTCGGATTGAAGTTGTT+TGG | - | chr4_2:3140117-3140136 | Msa0584130:intron | 35.0% | |
TACTCGGATTGAAGTTGTTT+GGG | - | chr4_2:3140118-3140137 | Msa0584130:intron | 35.0% | |
AGAATCTACCATTGAATCGA+AGG | - | chr4_2:3140275-3140294 | Msa0584130:CDS | 35.0% | |
ATGAACATTCCATCCTTCTA+AGG | + | chr4_2:3140683-3140702 | None:intergenic | 35.0% | |
! | AGTTTGGAATCTTAAGAGGT+AGG | + | chr4_2:3140768-3140787 | None:intergenic | 35.0% |
! | CCAAACTTGTCTGATTAGTT+TGG | + | chr4_2:3140784-3140803 | None:intergenic | 35.0% |
CCAAACTAATCAGACAAGTT+TGG | - | chr4_2:3140781-3140800 | Msa0584130:intron | 35.0% | |
! | AATGACTTGTCAAACTGCTT+TGG | + | chr4_2:3141007-3141026 | None:intergenic | 35.0% |
ATATGCTATGAGCAATCCAC+GGG | + | chr4_2:3135781-3135800 | None:intergenic | 40.0% | |
AAGAATTGTTGACAAAGGCC+TGG | - | chr4_2:3135925-3135944 | Msa0584130:three_prime_UTR | 40.0% | |
! | AATTGGTTTCTCTGTCGACT+TGG | + | chr4_2:3135958-3135977 | None:intergenic | 40.0% |
AAGTCGACAGAGAAACCAAT+TGG | - | chr4_2:3135957-3135976 | Msa0584130:intron | 40.0% | |
TGTTCTCCACCATTGTAAGT+TGG | + | chr4_2:3136369-3136388 | None:intergenic | 40.0% | |
! | TTACAATGGTGGAGAACAGA+TGG | - | chr4_2:3136371-3136390 | Msa0584130:intron | 40.0% |
CAGTAGTACAAGAATTCCAC+TGG | + | chr4_2:3136428-3136447 | None:intergenic | 40.0% | |
CAGTGGAATTCTTGTACTAC+TGG | - | chr4_2:3136426-3136445 | Msa0584130:intron | 40.0% | |
CACCACACCCCTAAAATAAT+TGG | + | chr4_2:3136902-3136921 | None:intergenic | 40.0% | |
TTGGCTAGATGTTGTGTGTA+AGG | - | chr4_2:3136947-3136966 | Msa0584130:intron | 40.0% | |
CGCTGCATCACACAAAATTT+AGG | - | chr4_2:3137277-3137296 | Msa0584130:intron | 40.0% | |
AGCTTCATATGTAGCATCTG+AGG | + | chr4_2:3137361-3137380 | None:intergenic | 40.0% | |
TCCATCTTTCAACTACGCTT+AGG | - | chr4_2:3137444-3137463 | Msa0584130:CDS | 40.0% | |
CCATCTTTCAACTACGCTTA+GGG | - | chr4_2:3137445-3137464 | Msa0584130:CDS | 40.0% | |
TTTAGATGTTTGAGGGTTGG+AGG | + | chr4_2:3137484-3137503 | None:intergenic | 40.0% | |
CCATTTAGATGTTTGAGGGT+TGG | + | chr4_2:3137487-3137506 | None:intergenic | 40.0% | |
CCAACCCTCAAACATCTAAA+TGG | - | chr4_2:3137484-3137503 | Msa0584130:intron | 40.0% | |
AGCATAGAGCACGTTGAAAA+AGG | + | chr4_2:3137528-3137547 | None:intergenic | 40.0% | |
! | ATGCTTGTGACTTGGATTAG+TGG | - | chr4_2:3137543-3137562 | Msa0584130:intron | 40.0% |
!! | TGCTTGTGACTTGGATTAGT+GGG | - | chr4_2:3137544-3137563 | Msa0584130:intron | 40.0% |
CAAAAAGCGAGAAACCAAAC+GGG | + | chr4_2:3137725-3137744 | None:intergenic | 40.0% | |
! | GGCTGATTTAAGTGGAGTAA+AGG | - | chr4_2:3137808-3137827 | Msa0584130:intron | 40.0% |
GGAGTAAAGGTGATAAGTCT+AGG | - | chr4_2:3137821-3137840 | Msa0584130:intron | 40.0% | |
GTGCTTAACAACATTCCCAA+AGG | - | chr4_2:3138114-3138133 | Msa0584130:intron | 40.0% | |
ACTCAGGGGCAAGTTTAATA+AGG | - | chr4_2:3138152-3138171 | Msa0584130:intron | 40.0% | |
GCTTTGGCCATTAGCTAATA+AGG | - | chr4_2:3138255-3138274 | Msa0584130:intron | 40.0% | |
AAAGAAGAGGAAGCAGTTAG+AGG | + | chr4_2:3139119-3139138 | None:intergenic | 40.0% | |
AGCAAATGCAAGCATCAGAA+GGG | - | chr4_2:3139550-3139569 | Msa0584130:CDS | 40.0% | |
!! | TCATTGATGGTGTATAGTGG+TGG | + | chr4_2:3139632-3139651 | None:intergenic | 40.0% |
GCAGTAGGACTTATCATTGA+TGG | + | chr4_2:3139645-3139664 | None:intergenic | 40.0% | |
!!! | TTTTTTGTTAGGGGCCTTTC+GGG | + | chr4_2:3139827-3139846 | None:intergenic | 40.0% |
GGAATAGTTCATGCCTTAGA+AGG | - | chr4_2:3140667-3140686 | Msa0584130:intron | 40.0% | |
TAGTTCATGCCTTAGAAGGA+TGG | - | chr4_2:3140671-3140690 | Msa0584130:intron | 40.0% | |
TCTTAAGAGGTAGGTAACCA+TGG | + | chr4_2:3140759-3140778 | None:intergenic | 40.0% | |
TCACGCTACCAAACTGCTAA+AGG | - | chr4_2:3135896-3135915 | Msa0584130:three_prime_UTR | 45.0% | |
! | CATTGTAAGTTGGCAGCCAT+AGG | + | chr4_2:3136359-3136378 | None:intergenic | 45.0% |
CTATGGCTGCCAACTTACAA+TGG | - | chr4_2:3136357-3136376 | Msa0584130:intron | 45.0% | |
ATTGTCACTGAGCCTATCAC+TGG | - | chr4_2:3136512-3136531 | Msa0584130:intron | 45.0% | |
!! | CTAAAGGTACCCTATGTAGG+CGG | + | chr4_2:3137014-3137033 | None:intergenic | 45.0% |
TACTCAAGACGAACAGAGAC+CGG | + | chr4_2:3137055-3137074 | None:intergenic | 45.0% | |
TGTGTTAAGTGCACCACATC+TGG | + | chr4_2:3137408-3137427 | None:intergenic | 45.0% | |
CCCTAAGCGTAGTTGAAAGA+TGG | + | chr4_2:3137448-3137467 | None:intergenic | 45.0% | |
AAGATCTCAAGCTGCAGTGT+TGG | - | chr4_2:3137598-3137617 | Msa0584130:intron | 45.0% | |
AACAAGCAACAACACCCGTT+TGG | - | chr4_2:3137708-3137727 | Msa0584130:intron | 45.0% | |
! | AGCACTTGATTGGTCCCTTT+GGG | + | chr4_2:3138132-3138151 | None:intergenic | 45.0% |
! | TAGCACTTGATTGGTCCCTT+TGG | + | chr4_2:3138133-3138152 | None:intergenic | 45.0% |
! | GACCAATCAAGTGCTACTCA+GGG | - | chr4_2:3138137-3138156 | Msa0584130:intron | 45.0% |
! | ACCAATCAAGTGCTACTCAG+GGG | - | chr4_2:3138138-3138157 | Msa0584130:intron | 45.0% |
AGCTGAAAGAGCTTGAACGA+AGG | - | chr4_2:3138615-3138634 | Msa0584130:intron | 45.0% | |
GCTGAAAGAGCTTGAACGAA+GGG | - | chr4_2:3138616-3138635 | Msa0584130:intron | 45.0% | |
TGATAGAGCCAAGCTTCCAT+TGG | + | chr4_2:3138651-3138670 | None:intergenic | 45.0% | |
TGAAATCAGAGGGAGGATTG+TGG | - | chr4_2:3139000-3139019 | Msa0584130:intron | 45.0% | |
TTGTGGTGCTTCCTCTTACA+AGG | - | chr4_2:3139017-3139036 | Msa0584130:intron | 45.0% | |
GTTATGCTAGAAGCCATCCA+TGG | + | chr4_2:3139289-3139308 | None:intergenic | 45.0% | |
GAGCAAATGCAAGCATCAGA+AGG | - | chr4_2:3139549-3139568 | Msa0584130:CDS | 45.0% | |
TGCAGGTTTATGACTGCAGT+AGG | + | chr4_2:3139660-3139679 | None:intergenic | 45.0% | |
CATAAACCTGCATTCGTGTG+AGG | - | chr4_2:3139668-3139687 | Msa0584130:CDS | 45.0% | |
CAAGCACTCATGACTCTTGT+TGG | + | chr4_2:3140637-3140656 | None:intergenic | 45.0% | |
CAACAAGAGTCATGAGTGCT+TGG | - | chr4_2:3140635-3140654 | Msa0584130:CDS | 45.0% | |
GGATGGAATGTTCATGAGTG+TGG | - | chr4_2:3140688-3140707 | Msa0584130:intron | 45.0% | |
AGTTCGTGATTCTAAGCCCG+TGG | - | chr4_2:3135762-3135781 | Msa0584130:three_prime_UTR | 50.0% | |
!! | TGTCGACTTGGTCGAATTCC+AGG | + | chr4_2:3135946-3135965 | None:intergenic | 50.0% |
TGGCTGCCAACTTACAATGG+TGG | - | chr4_2:3136360-3136379 | Msa0584130:intron | 50.0% | |
CTTACAGCTCTCTTGCATGC+TGG | - | chr4_2:3136401-3136420 | Msa0584130:intron | 50.0% | |
TCGTTTGTGGCTGCACTGTA+TGG | - | chr4_2:3136726-3136745 | Msa0584130:intron | 50.0% | |
CCTACGTGCAACATCCATGA+GGG | + | chr4_2:3136925-3136944 | None:intergenic | 50.0% | |
CCTCATGGATGTTGCACGTA+GGG | - | chr4_2:3136923-3136942 | Msa0584130:intron | 50.0% | |
TGGATGTTGCACGTAGGGTT+TGG | - | chr4_2:3136928-3136947 | Msa0584130:intron | 50.0% | |
AGCTTGTGTGAAGAGACCAG+AGG | - | chr4_2:3137377-3137396 | Msa0584130:CDS | 50.0% | |
ACCAGAGGAATCACCAGATG+TGG | - | chr4_2:3137392-3137411 | Msa0584130:CDS | 50.0% | |
ACCACATCTGGTGATTCCTC+TGG | + | chr4_2:3137396-3137415 | None:intergenic | 50.0% | |
TGTTTGAGGGTTGGAGGCTA+AGG | + | chr4_2:3137478-3137497 | None:intergenic | 50.0% | |
CGTGCTCTATGCTTGTGACT+TGG | - | chr4_2:3137535-3137554 | Msa0584130:intron | 50.0% | |
! | GGACCAATCAAGTGCTACTC+AGG | - | chr4_2:3138136-3138155 | Msa0584130:intron | 50.0% |
AGCCAAGCTTCCATTGGACA+TGG | + | chr4_2:3138645-3138664 | None:intergenic | 50.0% | |
GCTTCCTCTTACAAGGTTGC+CGG | - | chr4_2:3139024-3139043 | Msa0584130:intron | 50.0% | |
AACCTGCATTCGTGTGAGGT+TGG | - | chr4_2:3139672-3139691 | Msa0584130:CDS | 50.0% | |
TTCCAACCTCACACGAATGC+AGG | + | chr4_2:3139677-3139696 | None:intergenic | 50.0% | |
AATGAGATGGTCGATCCGAG+AGG | - | chr4_2:3139801-3139820 | Msa0584130:intron | 50.0% | |
TGGGAAGCAAGTATTCGCCA+TGG | - | chr4_2:3140739-3140758 | Msa0584130:intron | 50.0% | |
TCTCTTGCATGCTGGACCAG+TGG | - | chr4_2:3136409-3136428 | Msa0584130:intron | 55.0% | |
CCCTCATGGATGTTGCACGT+AGG | - | chr4_2:3136922-3136941 | Msa0584130:intron | 55.0% | |
CCCTACGTGCAACATCCATG+AGG | + | chr4_2:3136926-3136945 | None:intergenic | 55.0% | |
TTCGGGTGTTCCGCCTACAT+AGG | - | chr4_2:3137001-3137020 | Msa0584130:intron | 55.0% | |
TCGGGTGTTCCGCCTACATA+GGG | - | chr4_2:3137002-3137021 | Msa0584130:intron | 55.0% | |
GCCCCTGAGTAGCACTTGAT+TGG | + | chr4_2:3138142-3138161 | None:intergenic | 55.0% | |
CGCCATGTCCAATGGAAGCT+TGG | - | chr4_2:3138640-3138659 | Msa0584130:intron | 55.0% | |
ATGGCCGGCAACCTTGTAAG+AGG | + | chr4_2:3139031-3139050 | None:intergenic | 55.0% | |
ATGAGTGCTTGGCGCATTGC+TGG | - | chr4_2:3140646-3140665 | Msa0584130:CDS | 55.0% | |
! | TTAGGGGTGTGGTGCCCTCA+TGG | - | chr4_2:3136908-3136927 | Msa0584130:intron | 60.0% |
CGAAGGGTCGCCATGTCCAA+TGG | - | chr4_2:3138632-3138651 | Msa0584130:intron | 60.0% | |
GTCGATCCGAGAGGCCCGAA+AGG | - | chr4_2:3139810-3139829 | Msa0584130:intron | 65.0% | |
TAGGGGCCTTTCGGGCCTCT+CGG | + | chr4_2:3139819-3139838 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_2 | gene | 3135752 | 3141233 | 3135752 | ID=Msa0584130;Name=Msa0584130 |
chr4_2 | mRNA | 3135752 | 3141233 | 3135752 | ID=Msa0584130-mRNA-1;Parent=Msa0584130;Name=Msa0584130-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0.88|0.8|1|0.88|0.8|10|411|593 |
chr4_2 | exon | 3135752 | 3135964 | 3135752 | ID=Msa0584130-mRNA-1:exon:924;Parent=Msa0584130-mRNA-1 |
chr4_2 | exon | 3135998 | 3136360 | 3135998 | ID=Msa0584130-mRNA-1:exon:923;Parent=Msa0584130-mRNA-1 |
chr4_2 | exon | 3137296 | 3137469 | 3137296 | ID=Msa0584130-mRNA-1:exon:922;Parent=Msa0584130-mRNA-1 |
chr4_2 | exon | 3138297 | 3138392 | 3138297 | ID=Msa0584130-mRNA-1:exon:921;Parent=Msa0584130-mRNA-1 |
chr4_2 | exon | 3138767 | 3138967 | 3138767 | ID=Msa0584130-mRNA-1:exon:920;Parent=Msa0584130-mRNA-1 |
chr4_2 | exon | 3139129 | 3139218 | 3139129 | ID=Msa0584130-mRNA-1:exon:919;Parent=Msa0584130-mRNA-1 |
chr4_2 | exon | 3139341 | 3139716 | 3139341 | ID=Msa0584130-mRNA-1:exon:918;Parent=Msa0584130-mRNA-1 |
chr4_2 | exon | 3140123 | 3140342 | 3140123 | ID=Msa0584130-mRNA-1:exon:917;Parent=Msa0584130-mRNA-1 |
chr4_2 | exon | 3140452 | 3140684 | 3140452 | ID=Msa0584130-mRNA-1:exon:916;Parent=Msa0584130-mRNA-1 |
chr4_2 | exon | 3141007 | 3141233 | 3141007 | ID=Msa0584130-mRNA-1:exon:915;Parent=Msa0584130-mRNA-1 |
chr4_2 | CDS | 3141007 | 3141233 | 3141007 | ID=Msa0584130-mRNA-1:cds;Parent=Msa0584130-mRNA-1 |
chr4_2 | CDS | 3140452 | 3140684 | 3140452 | ID=Msa0584130-mRNA-1:cds;Parent=Msa0584130-mRNA-1 |
chr4_2 | CDS | 3140123 | 3140342 | 3140123 | ID=Msa0584130-mRNA-1:cds;Parent=Msa0584130-mRNA-1 |
chr4_2 | CDS | 3139341 | 3139716 | 3139341 | ID=Msa0584130-mRNA-1:cds;Parent=Msa0584130-mRNA-1 |
chr4_2 | CDS | 3139129 | 3139218 | 3139129 | ID=Msa0584130-mRNA-1:cds;Parent=Msa0584130-mRNA-1 |
chr4_2 | CDS | 3138767 | 3138967 | 3138767 | ID=Msa0584130-mRNA-1:cds;Parent=Msa0584130-mRNA-1 |
chr4_2 | CDS | 3138297 | 3138392 | 3138297 | ID=Msa0584130-mRNA-1:cds;Parent=Msa0584130-mRNA-1 |
chr4_2 | CDS | 3137296 | 3137469 | 3137296 | ID=Msa0584130-mRNA-1:cds;Parent=Msa0584130-mRNA-1 |
chr4_2 | CDS | 3136196 | 3136360 | 3136196 | ID=Msa0584130-mRNA-1:cds;Parent=Msa0584130-mRNA-1 |
chr4_2 | three_prime_UTR | 3135998 | 3136195 | 3135998 | ID=Msa0584130-mRNA-1:three_prime_utr;Parent=Msa0584130-mRNA-1 |
chr4_2 | three_prime_UTR | 3135752 | 3135964 | 3135752 | ID=Msa0584130-mRNA-1:three_prime_utr;Parent=Msa0584130-mRNA-1 |
Gene Sequence |
Protein sequence |