AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0584130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0584130 MtrunA17_Chr4g0026761 89.262 596 58 1 4 593 20 615 0.0 1095
Msa0584130 MtrunA17_Chr7g0256371 79.933 593 111 2 4 590 29 619 0.0 976
Msa0584130 MtrunA17_Chr7g0256411 79.461 594 115 2 4 591 51 643 0.0 971
Msa0584130 MtrunA17_Chr7g0256391 78.752 593 120 1 4 590 20 612 0.0 959
Msa0584130 MtrunA17_Chr4g0026811 93.202 456 25 1 1 450 3 458 0.0 847
Msa0584130 MtrunA17_Chr8g0337081 62.876 598 212 3 4 591 20 617 0.0 735
Msa0584130 MtrunA17_Chr8g0337101 58.333 600 239 4 4 592 56 655 0.0 724
Msa0584130 MtrunA17_Chr4g0073231 31.639 610 391 8 4 589 17 624 4.24e-102 322
Msa0584130 MtrunA17_Chr4g0026821 87.912 91 11 0 449 539 3 93 6.23e-53 176
Msa0584130 MtrunA17_Chr2g0305431 33.977 259 167 1 4 258 17 275 2.32e-50 176
Msa0584130 MtrunA17_Chr4g0026831 93.617 47 3 0 547 593 1 47 5.89e-26 100
Msa0584130 MtrunA17_Chr2g0305451 30.556 216 142 3 382 589 2 217 9.14e-25 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0584130 AT1G02205.4 53.719 605 265 4 4 593 21 625 0.0 670
Msa0584130 AT1G02205.2 53.719 605 265 4 4 593 20 624 0.0 668
Msa0584130 AT1G02205.3 53.279 610 265 4 4 593 20 629 0.0 665
Msa0584130 AT1G02190.1 54.050 605 257 10 4 589 20 622 0.0 631
Msa0584130 AT1G02190.2 54.077 601 259 9 4 589 20 618 0.0 630
Msa0584130 AT2G37700.3 53.577 601 267 5 4 593 20 619 0.0 627
Msa0584130 AT2G37700.1 53.000 600 263 5 4 593 20 610 0.0 621
Msa0584130 AT2G37700.4 50.083 601 251 8 4 593 20 582 0.0 561
Msa0584130 AT2G37700.2 55.066 454 196 3 4 450 20 472 1.98e-166 483
Msa0584130 AT1G02205.1 50.110 453 214 3 153 593 8 460 4.19e-164 476
Msa0584130 AT1G02205.5 47.354 378 187 3 228 593 8 385 3.24e-129 384
Msa0584130 AT5G57800.1 32.623 610 384 9 2 585 15 623 4.95e-100 317

Find 123 sgRNAs with CRISPR-Local

Find 289 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTATATATGACTACATTTA+TGG 0.133350 4_2:-3139642 Msa0584130:CDS
ATATCAATAAGCCAAATATT+TGG 0.223478 4_2:-3135839 Msa0584130:three_prime_UTR
TTTGGAGGAAAATGAGAAAA+AGG 0.243101 4_2:+3137378 None:intergenic
TATTAGTGCATCTATTTGTT+AGG 0.257454 4_2:-3135889 Msa0584130:three_prime_UTR
CCAAACTTGTCTGATTAGTT+TGG 0.262919 4_2:+3136182 None:intergenic
AAGTAGGAGAAGAGTTTCTT+AGG 0.273284 4_2:+3140156 None:intergenic
TATTTGACATTGAGAAAGTA+TGG 0.287267 4_2:-3136244 Msa0584130:CDS
AACATTCTGACGAATATATA+AGG 0.292856 4_2:+3141115 None:intergenic
AGCATAGAGCACGTTGAAAA+AGG 0.296954 4_2:+3139438 None:intergenic
TGTCGACTTGGTCGAATTCC+AGG 0.311368 4_2:+3141020 None:intergenic
CCAACCCTCAAACATCTAAA+TGG 0.316593 4_2:-3139479 Msa0584130:CDS
ACAACTTTAATCTTCAGATT+TGG 0.323949 4_2:+3138900 None:intergenic
AATAGGTGACTGTATTATAT+AGG 0.334955 4_2:-3138375 Msa0584130:intron
ACTCAGGGGCAAGTTTAATA+AGG 0.340636 4_2:-3138811 Msa0584130:CDS
AGCACTTGATTGGTCCCTTT+GGG 0.349623 4_2:+3138834 None:intergenic
CCAAACTAATCAGACAAGTT+TGG 0.352229 4_2:-3136182 Msa0584130:exon
ATGAACATTCCATCCTTCTA+AGG 0.364125 4_2:+3136283 None:intergenic
CAAGTTTAATAAGGTTGCTT+TGG 0.369770 4_2:-3138802 Msa0584130:CDS
TAGCACTTGATTGGTCCCTT+TGG 0.383431 4_2:+3138833 None:intergenic
TTAACCTTTGGAGTATTGAT+TGG 0.387155 4_2:+3138292 None:intergenic
ATGAGTGCTTGGCGCATTGC+TGG 0.389012 4_2:-3136317 Msa0584130:CDS
GCCCCTGAGTAGCACTTGAT+TGG 0.390520 4_2:+3138824 None:intergenic
TGTATGTGAAATACTTCAAT+TGG 0.395814 4_2:+3140130 None:intergenic
CGCTGCATCACACAAAATTT+AGG 0.401705 4_2:-3139686 Msa0584130:CDS
TGTTTGAGGGTTGGAGGCTA+AGG 0.409276 4_2:+3139488 None:intergenic
CAAGCACTCATGACTCTTGT+TGG 0.415005 4_2:+3136329 None:intergenic
GGAATAGTTCATGCCTTAGA+AGG 0.416100 4_2:-3136296 Msa0584130:CDS
CCATCTTTCAACTACGCTTA+GGG 0.416116 4_2:-3139518 Msa0584130:CDS
CCATAAATGTAGTCATATAT+AGG 0.417569 4_2:+3139642 None:intergenic
TCCATCTTTCAACTACGCTT+AGG 0.422294 4_2:-3139519 Msa0584130:CDS
ATAGGTGACTGTATTATATA+GGG 0.422701 4_2:-3138374 Msa0584130:intron
TATGCCAACATTTCAGCAAA+TGG 0.424110 4_2:+3140309 None:intergenic
TGAACAATGTTGTCAACATT+GGG 0.427233 4_2:+3140268 None:intergenic
ATTAGTGCATCTATTTGTTA+GGG 0.435359 4_2:-3135888 Msa0584130:three_prime_UTR
CTGAAGATTAAAGTTGTAGA+TGG 0.439460 4_2:-3138894 Msa0584130:CDS
ATGAACAATGTTGTCAACAT+TGG 0.446199 4_2:+3140267 None:intergenic
ACTTTACGCAATATTTCCTA+TGG 0.446705 4_2:-3140623 Msa0584130:CDS
CCTCCAAATAAAATGCGAAA+AGG 0.450420 4_2:-3137363 Msa0584130:CDS
TATGGTTAGTTGGAGATGAA+TGG 0.456856 4_2:-3137446 Msa0584130:CDS
GGACCAATCAAGTGCTACTC+AGG 0.458366 4_2:-3138827 Msa0584130:CDS
CTTACAGCTCTCTTGCATGC+TGG 0.459101 4_2:-3140562 Msa0584130:CDS
TGTGTTAAGTGCACCACATC+TGG 0.460275 4_2:+3139558 None:intergenic
GGAATATGAGATAGTATGTT+GGG 0.461460 4_2:+3141137 None:intergenic
GATTAGTTTGGAATCTTAAG+AGG 0.464881 4_2:+3136194 None:intergenic
AGGTACCATTTAGATGTTTG+AGG 0.465285 4_2:+3139474 None:intergenic
GAATGTTGCACAATCAGATA+TGG 0.466050 4_2:-3141099 Msa0584130:CDS
CAGTGGAATTCTTGTACTAC+TGG 0.467990 4_2:-3140537 Msa0584130:CDS
CCCTAAGCGTAGTTGAAAGA+TGG 0.468595 4_2:+3139518 None:intergenic
CGCCATGTCCAATGGAAGCT+TGG 0.474471 4_2:-3138323 Msa0584130:CDS
ACATTCTGACGAATATATAA+GGG 0.475209 4_2:+3141116 None:intergenic
GCAGTAGGACTTATCATTGA+TGG 0.477322 4_2:+3137321 None:intergenic
GGTACCATTTAGATGTTTGA+GGG 0.478371 4_2:+3139475 None:intergenic
TCACGCTACCAAACTGCTAA+AGG 0.482745 4_2:-3141067 Msa0584130:CDS
ACCACATCTGGTGATTCCTC+TGG 0.483089 4_2:+3139570 None:intergenic
AATTGGTTTCTCTGTCGACT+TGG 0.483201 4_2:+3141008 None:intergenic
ATCTAACAGATATGGTTAGT+TGG 0.485488 4_2:-3137456 Msa0584130:intron
CCATTTAGATGTTTGAGGGT+TGG 0.485770 4_2:+3139479 None:intergenic
TTTAGATGTTTGAGGGTTGG+AGG 0.486191 4_2:+3139482 None:intergenic
ATACTTCAATTGGGGAAAGT+AGG 0.487785 4_2:+3140140 None:intergenic
TGCTTGTGACTTGGATTAGT+GGG 0.489293 4_2:-3139419 Msa0584130:CDS
TTCCAACCTCACACGAATGC+AGG 0.490503 4_2:+3137289 None:intergenic
CGTGCTCTATGCTTGTGACT+TGG 0.492557 4_2:-3139428 Msa0584130:CDS
ATGCTTGTGACTTGGATTAG+TGG 0.496658 4_2:-3139420 Msa0584130:CDS
AAGATCTCAAGCTGCAGTGT+TGG 0.498853 4_2:-3139365 Msa0584130:CDS
ATGGTTAGTTGGAGATGAAT+GGG 0.501106 4_2:-3137445 Msa0584130:CDS
GAAGTTACTTTCTAAAACAA+TGG 0.502211 4_2:+3139392 None:intergenic
AGTTTGGAATCTTAAGAGGT+AGG 0.503572 4_2:+3136198 None:intergenic
GGGAATATGAGATAGTATGT+TGG 0.504673 4_2:+3141136 None:intergenic
TGATAGAGCCAAGCTTCCAT+TGG 0.508550 4_2:+3138315 None:intergenic
AAGAATTGTTGACAAAGGCC+TGG 0.510050 4_2:-3141038 Msa0584130:CDS
TCGTTTGTGGCTGCACTGTA+TGG 0.516902 4_2:-3140237 Msa0584130:CDS
CAACAAGAGTCATGAGTGCT+TGG 0.516934 4_2:-3136328 Msa0584130:CDS
GCAGCATAAAGCATTAGTAA+TGG 0.519657 4_2:+3138779 None:intergenic
GTATGTGAAATACTTCAATT+GGG 0.520031 4_2:+3140131 None:intergenic
TTGAAGAATGATGGTGAGAA+TGG 0.522722 4_2:+3140473 None:intergenic
GGAGTAAAGGTGATAAGTCT+AGG 0.524556 4_2:-3139142 Msa0584130:CDS
AGCTGAAAGAGCTTGAACGA+AGG 0.524659 4_2:-3138348 Msa0584130:CDS
CGAAGGGTCGCCATGTCCAA+TGG 0.526318 4_2:-3138331 Msa0584130:CDS
AATAAGCCAAATATTTGGCA+TGG 0.526425 4_2:-3135834 Msa0584130:three_prime_UTR
TTATCATTGATGGTGTATAG+TGG 0.533673 4_2:+3137331 None:intergenic
TGTTCTCCACCATTGTAAGT+TGG 0.536824 4_2:+3140597 None:intergenic
ACTGCGCAGTTTATATTGAA+AGG 0.537435 4_2:-3138926 Msa0584130:CDS
CTATGGCTGCCAACTTACAA+TGG 0.545118 4_2:-3140606 Msa0584130:CDS
TAGTTCATGCCTTAGAAGGA+TGG 0.550562 4_2:-3136292 Msa0584130:CDS
AAGTCGACAGAGAAACCAAT+TGG 0.553427 4_2:-3141006 Msa0584130:intron
TGCTTAACAACATTCCCAAA+GGG 0.556459 4_2:-3138848 Msa0584130:CDS
ATTGTCACTGAGCCTATCAC+TGG 0.557450 4_2:-3140451 Msa0584130:intron
GGCTGATTTAAGTGGAGTAA+AGG 0.558217 4_2:-3139155 Msa0584130:CDS
ACATCCATTTGCTGAAATGT+TGG 0.559199 4_2:-3140313 Msa0584130:CDS
GAGCAAATGCAAGCATCAGA+AGG 0.559545 4_2:-3137414 Msa0584130:CDS
GCTGAAAGAGCTTGAACGAA+GGG 0.563864 4_2:-3138347 Msa0584130:CDS
AGCTTCATATGTAGCATCTG+AGG 0.581755 4_2:+3139605 None:intergenic
CAGTGACAATTGAAGAATGA+TGG 0.584374 4_2:+3140464 None:intergenic
ATTTGACATTGAGAAAGTAT+GGG 0.587113 4_2:-3136243 Msa0584130:CDS
CATTGTAAGTTGGCAGCCAT+AGG 0.587199 4_2:+3140607 None:intergenic
CAGTAGTACAAGAATTCCAC+TGG 0.588431 4_2:+3140538 None:intergenic
TGGCTTATTGATATAAAACA+TGG 0.590486 4_2:+3135848 None:intergenic
GACCAATCAAGTGCTACTCA+GGG 0.596465 4_2:-3138826 Msa0584130:CDS
ATATGCTATGAGCAATCCAC+GGG 0.601636 4_2:+3141185 None:intergenic
AATGGTACCTCAATTTAATG+TGG 0.603244 4_2:-3139461 Msa0584130:CDS
AGTTCGTGATTCTAAGCCCG+TGG 0.603498 4_2:-3141201 Msa0584130:CDS
ATAATGATGGCTGATTTAAG+TGG 0.604119 4_2:-3139163 Msa0584130:CDS
TCTCTTGCATGCTGGACCAG+TGG 0.604144 4_2:-3140554 Msa0584130:CDS
AAAAGAAGAATTGTTGACAA+AGG 0.612342 4_2:-3141043 Msa0584130:CDS
ATCACCAATCAATACTCCAA+AGG 0.614842 4_2:-3138296 Msa0584130:intron
GATTGAAGAGACAATAATGA+TGG 0.615276 4_2:-3139176 Msa0584130:CDS
TTACAATGGTGGAGAACAGA+TGG 0.615918 4_2:-3140592 Msa0584130:CDS
AGCCAAGCTTCCATTGGACA+TGG 0.622774 4_2:+3138321 None:intergenic
TGCAGGTTTATGACTGCAGT+AGG 0.623460 4_2:+3137306 None:intergenic
ACCAGAGGAATCACCAGATG+TGG 0.626932 4_2:-3139571 Msa0584130:CDS
GGATGGAATGTTCATGAGTG+TGG 0.632339 4_2:-3136275 Msa0584130:CDS
TGGCTGCCAACTTACAATGG+TGG 0.632530 4_2:-3140603 Msa0584130:CDS
TCTTAAGAGGTAGGTAACCA+TGG 0.633958 4_2:+3136207 None:intergenic
CATAAACCTGCATTCGTGTG+AGG 0.635395 4_2:-3137295 Msa0584130:intron
GTGCTTAACAACATTCCCAA+AGG 0.636164 4_2:-3138849 Msa0584130:CDS
AGCAAATGCAAGCATCAGAA+GGG 0.638426 4_2:-3137413 Msa0584130:CDS
TATATGCTATGAGCAATCCA+CGG 0.638673 4_2:+3141184 None:intergenic
TCATTGATGGTGTATAGTGG+TGG 0.657410 4_2:+3137334 None:intergenic
TGGGAAGCAAGTATTCGCCA+TGG 0.674366 4_2:-3136224 Msa0584130:CDS
TGACTACATTTATGGTACTG+TGG 0.682689 4_2:-3139634 Msa0584130:CDS
ACCAATCAAGTGCTACTCAG+GGG 0.695886 4_2:-3138825 Msa0584130:CDS
TATGTGAAATACTTCAATTG+GGG 0.721848 4_2:+3140132 None:intergenic
AGCTTGTGTGAAGAGACCAG+AGG 0.773132 4_2:-3139586 Msa0584130:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTTTTATTTTTTTA+TGG - chr4_2:3136970-3136989 Msa0584130:intron 0.0%
!! TATATATATATATATATATA+TGG - chr4_2:3139141-3139160 Msa0584130:CDS 0.0%
!! ATATATATATATATATATAT+GGG - chr4_2:3139142-3139161 Msa0584130:CDS 0.0%
!! TATATATATATATATATATA+GGG + chr4_2:3139141-3139160 None:intergenic 0.0%
!! ATATATATATATATATATAT+AGG + chr4_2:3139142-3139161 None:intergenic 0.0%
!! TCTTTAATTGATAAATAAAT+CGG + chr4_2:3136146-3136165 None:intergenic 10.0%
!!! TTAATTTTTCCAATTATTTT+AGG - chr4_2:3136890-3136909 Msa0584130:intron 10.0%
!!! TAATTTTTCCAATTATTTTA+GGG - chr4_2:3136891-3136910 Msa0584130:intron 10.0%
!!! AAAGTTTAATTTTATTCTAA+TGG - chr4_2:3138552-3138571 Msa0584130:intron 10.0%
!! CCTATTAATTATAATCAATT+GGG + chr4_2:3136021-3136040 None:intergenic 15.0%
!! TCCTATTAATTATAATCAAT+TGG + chr4_2:3136022-3136041 None:intergenic 15.0%
!! GATTATAATTAATAGGAATT+AGG - chr4_2:3136025-3136044 Msa0584130:three_prime_UTR 15.0%
!! ACAATAAGTTTCTTATATTA+GGG + chr4_2:3136598-3136617 None:intergenic 15.0%
!! AACAATAAGTTTCTTATATT+AGG + chr4_2:3136599-3136618 None:intergenic 15.0%
!! TAATATAAGAAACTTATTGT+TGG - chr4_2:3136598-3136617 Msa0584130:intron 15.0%
!!! AATTTTTCCAATTATTTTAG+GGG - chr4_2:3136892-3136911 Msa0584130:intron 15.0%
!!! TTTTTTATGGTGTTTATTTT+CGG - chr4_2:3136983-3137002 Msa0584130:intron 15.0%
!!! TTCTTTATTGCATATTTTTA+TGG - chr4_2:3137192-3137211 Msa0584130:intron 15.0%
!!! ATTCTTCTTAATACAATTTT+TGG + chr4_2:3138442-3138461 None:intergenic 15.0%
!!! TTTATTTAATTTGAAATCAG+AGG - chr4_2:3138989-3139008 Msa0584130:intron 15.0%
!!! TTATTTAATTTGAAATCAGA+GGG - chr4_2:3138990-3139009 Msa0584130:intron 15.0%
!! ATATATATATAACAAAGAAG+AGG + chr4_2:3139132-3139151 None:intergenic 15.0%
!!! AATCTTATCCTTTTTTTTTT+GGG - chr4_2:3139934-3139953 Msa0584130:intron 15.0%
!!! ATAGCATATACTCTTTTATA+TGG - chr4_2:3135792-3135811 Msa0584130:three_prime_UTR 20.0%
!!! TAGCATATACTCTTTTATAT+GGG - chr4_2:3135793-3135812 Msa0584130:three_prime_UTR 20.0%
!! TAAAGCCAAAATTGAAATTT+AGG + chr4_2:3135985-3136004 None:intergenic 20.0%
!! CCCAATTGATTATAATTAAT+AGG - chr4_2:3136018-3136037 Msa0584130:three_prime_UTR 20.0%
!!! TAATTGTGTATGATTTGTTA+TGG - chr4_2:3136101-3136120 Msa0584130:three_prime_UTR 20.0%
!! AAAGTTCCAATACAAATAAA+GGG + chr4_2:3136550-3136569 None:intergenic 20.0%
!! AAAAGTTCCAATACAAATAA+AGG + chr4_2:3136551-3136570 None:intergenic 20.0%
!!! TTTTTATGGTGTTTATTTTC+GGG - chr4_2:3136984-3137003 Msa0584130:intron 20.0%
!! AAACAGATAATACAAACTAA+AGG + chr4_2:3137030-3137049 None:intergenic 20.0%
!! ATATAAAGTTCGAAATTCAT+GGG + chr4_2:3137662-3137681 None:intergenic 20.0%
!! AATATAAAGTTCGAAATTCA+TGG + chr4_2:3137663-3137682 None:intergenic 20.0%
!!! TTTTATTCTCTATATCCATA+AGG - chr4_2:3137683-3137702 Msa0584130:intron 20.0%
!!! TGTATATAAAGCATTAGTAA+TGG + chr4_2:3138290-3138309 None:intergenic 20.0%
!!! ATAATGCAATATTAGCTTAA+GGG + chr4_2:3138326-3138345 None:intergenic 20.0%
!!! AATAATGCAATATTAGCTTA+AGG + chr4_2:3138327-3138346 None:intergenic 20.0%
!! TGAAACAATAAATTAACCTT+TGG + chr4_2:3138686-3138705 None:intergenic 20.0%
!! CAAAATATTAAACTATGAGA+AGG - chr4_2:3138768-3138787 Msa0584130:CDS 20.0%
!! AAAACACAAAAACAAGAAAA+TGG + chr4_2:3139050-3139069 None:intergenic 20.0%
!! AAGTTATATAAAAAACACCA+TGG - chr4_2:3139269-3139288 Msa0584130:intron 20.0%
!! TGTTAGAAATATGAAGTAAT+AGG + chr4_2:3139481-3139500 None:intergenic 20.0%
!! CATTATAAATCTAACAGATA+TGG - chr4_2:3139499-3139518 Msa0584130:CDS 20.0%
!!! TTTTGCCCTATAATTTAAAA+AGG - chr4_2:3139728-3139747 Msa0584130:intron 20.0%
!!! TTTAATTTAGCAAGCAATAT+GGG - chr4_2:3139901-3139920 Msa0584130:intron 20.0%
!!! CAATCTTATCCTTTTTTTTT+TGG - chr4_2:3139933-3139952 Msa0584130:intron 20.0%
!!! ATCTTATCCTTTTTTTTTTG+GGG - chr4_2:3139935-3139954 Msa0584130:intron 20.0%
!!! ATTAAATTGTTGACTTGATT+TGG - chr4_2:3140084-3140103 Msa0584130:intron 20.0%
!!! TTAAATTGTTGACTTGATTT+GGG - chr4_2:3140085-3140104 Msa0584130:intron 20.0%
!!! ATTTTTAGTGTTGCAAAAAA+AGG - chr4_2:3140143-3140162 Msa0584130:CDS 20.0%
!! TTTGTTGAAATGTTATTGAA+TGG + chr4_2:3140207-3140226 None:intergenic 20.0%
!!! TACAGAATCTTTTTTTTTTG+TGG - chr4_2:3140235-3140254 Msa0584130:CDS 20.0%
!!! CTTATATTTTAAGTGAAAAC+AGG + chr4_2:3140867-3140886 None:intergenic 20.0%
!! ATATCAATAAGCCAAATATT+TGG - chr4_2:3141124-3141143 Msa0584130:CDS 20.0%
! ACATTCTGACGAATATATAA+GGG + chr4_2:3135850-3135869 None:intergenic 25.0%
! AACATTCTGACGAATATATA+AGG + chr4_2:3135851-3135870 None:intergenic 25.0%
! AAAAGAAGAATTGTTGACAA+AGG - chr4_2:3135920-3135939 Msa0584130:three_prime_UTR 25.0%
! ATTGAAATTTAGGAACCAAT+TGG + chr4_2:3135975-3135994 None:intergenic 25.0%
!! TGGTTCCTAAATTTCAATTT+TGG - chr4_2:3135977-3135996 Msa0584130:intron 25.0%
!!! CTTTTTCCCTTTATTTGTAT+TGG - chr4_2:3136541-3136560 Msa0584130:intron 25.0%
! GGTTTACGAAAAATGTATAA+AGG + chr4_2:3136577-3136596 None:intergenic 25.0%
!!! ATCGATTTTATGAACAACAT+GGG - chr4_2:3136762-3136781 Msa0584130:intron 25.0%
! TATGTGAAATACTTCAATTG+GGG + chr4_2:3136834-3136853 None:intergenic 25.0%
! GTATGTGAAATACTTCAATT+GGG + chr4_2:3136835-3136854 None:intergenic 25.0%
! TGTATGTGAAATACTTCAAT+TGG + chr4_2:3136836-3136855 None:intergenic 25.0%
!!! CATACAAAGTTTGATTTTAC+AGG - chr4_2:3137247-3137266 Msa0584130:intron 25.0%
! CCATAAATGTAGTCATATAT+AGG + chr4_2:3137324-3137343 None:intergenic 25.0%
! CCTATATATGACTACATTTA+TGG - chr4_2:3137321-3137340 Msa0584130:CDS 25.0%
!!! GAAGTTACTTTCTAAAACAA+TGG + chr4_2:3137574-3137593 None:intergenic 25.0%
!!! CATACTTGTGTTTTAAATCT+TGG + chr4_2:3137630-3137649 None:intergenic 25.0%
!! ACGATTTTATCACAAAACTT+TGG - chr4_2:3137890-3137909 Msa0584130:intron 25.0%
! TGTATATATGTGTAACATTG+AGG - chr4_2:3137959-3137978 Msa0584130:intron 25.0%
! GTATATATGTGTAACATTGA+GGG - chr4_2:3137960-3137979 Msa0584130:intron 25.0%
! ACAACTTTAATCTTCAGATT+TGG + chr4_2:3138066-3138085 None:intergenic 25.0%
!! TAATGCAATATTAGCTTAAG+GGG + chr4_2:3138325-3138344 None:intergenic 25.0%
! AACCATCTAACTGAATTAAA+TGG - chr4_2:3138389-3138408 Msa0584130:intron 25.0%
! ACCATCTAACTGAATTAAAT+GGG - chr4_2:3138390-3138409 Msa0584130:intron 25.0%
!! TGCATTAAACATTTTGTACT+TGG + chr4_2:3138525-3138544 None:intergenic 25.0%
! AATAGGTGACTGTATTATAT+AGG - chr4_2:3138588-3138607 Msa0584130:intron 25.0%
! ATAGGTGACTGTATTATATA+GGG - chr4_2:3138589-3138608 Msa0584130:intron 25.0%
! TTATTGTTTCAATCCTTCAT+TGG - chr4_2:3138695-3138714 Msa0584130:intron 25.0%
! TTATCTTCAAATTCCAATGA+AGG + chr4_2:3138711-3138730 None:intergenic 25.0%
!! ACACCAACTAATTTTTATGA+AGG - chr4_2:3139234-3139253 Msa0584130:intron 25.0%
! ACACCTTCATAAAAATTAGT+TGG + chr4_2:3139240-3139259 None:intergenic 25.0%
! TATATAAAAAACACCATGGA+TGG - chr4_2:3139273-3139292 Msa0584130:intron 25.0%
!! CTCGACCTTTTTAAATTATA+GGG + chr4_2:3139736-3139755 None:intergenic 25.0%
!! TCTCGACCTTTTTAAATTAT+AGG + chr4_2:3139737-3139756 None:intergenic 25.0%
!! GTTTAATTTAGCAAGCAATA+TGG - chr4_2:3139900-3139919 Msa0584130:intron 25.0%
! GAATAAACCCCAAAAAAAAA+AGG + chr4_2:3139945-3139964 None:intergenic 25.0%
! ATTACTCATACTTACCTATT+TGG - chr4_2:3139998-3140017 Msa0584130:intron 25.0%
!!! TAAATTGTTGACTTGATTTG+GGG - chr4_2:3140086-3140105 Msa0584130:intron 25.0%
!!! GAATCTTTTTTTTTTGTGGT+CGG - chr4_2:3140239-3140258 Msa0584130:CDS 25.0%
!!! AATCTTTTTTTTTTGTGGTC+GGG - chr4_2:3140240-3140259 Msa0584130:CDS 25.0%
! CTATTAATGTACAACAGAAT+TGG - chr4_2:3140608-3140627 Msa0584130:CDS 25.0%
! TATTTGACATTGAGAAAGTA+TGG - chr4_2:3140719-3140738 Msa0584130:intron 25.0%
!! ATTTGACATTGAGAAAGTAT+GGG - chr4_2:3140720-3140739 Msa0584130:intron 25.0%
! TATTAGTGCATCTATTTGTT+AGG - chr4_2:3141074-3141093 Msa0584130:CDS 25.0%
!! ATTAGTGCATCTATTTGTTA+GGG - chr4_2:3141075-3141094 Msa0584130:CDS 25.0%
! TGGCTTATTGATATAAAACA+TGG + chr4_2:3141118-3141137 None:intergenic 25.0%
! CATATACTCTTTTATATGGG+TGG - chr4_2:3135796-3135815 Msa0584130:three_prime_UTR 30.0%
GGAATATGAGATAGTATGTT+GGG + chr4_2:3135829-3135848 None:intergenic 30.0%
! TTCTTTTTCCTTTAGCAGTT+TGG + chr4_2:3135907-3135926 None:intergenic 30.0%
! TTTTATTGTGTGACATTTGC+AGG - chr4_2:3136279-3136298 Msa0584130:CDS 30.0%
TTTATTGTGTGACATTTGCA+GGG - chr4_2:3136280-3136299 Msa0584130:CDS 30.0%
ACTTTACGCAATATTTCCTA+TGG - chr4_2:3136340-3136359 Msa0584130:CDS 30.0%
AAAAAGTTCATACCAGTGAT+AGG + chr4_2:3136527-3136546 None:intergenic 30.0%
!! AAACTTATTGTTGGTGTTGT+TGG - chr4_2:3136607-3136626 Msa0584130:intron 30.0%
!!! TTGTTGGTTTTTTATGACAG+CGG - chr4_2:3136623-3136642 Msa0584130:intron 30.0%
TGAACAATGTTGTCAACATT+GGG + chr4_2:3136698-3136717 None:intergenic 30.0%
ATGAACAATGTTGTCAACAT+TGG + chr4_2:3136699-3136718 None:intergenic 30.0%
GTTCATGAAAAAATCGTTTG+TGG - chr4_2:3136713-3136732 Msa0584130:intron 30.0%
!!! CATCGATTTTATGAACAACA+TGG - chr4_2:3136761-3136780 Msa0584130:intron 30.0%
GTTTGTATTATCTGTTTCAC+CGG - chr4_2:3137033-3137052 Msa0584130:intron 30.0%
AATGGTACCTCAATTTAATG+TGG - chr4_2:3137502-3137521 Msa0584130:intron 30.0%
AAAAAGGCCACATTAAATTG+AGG + chr4_2:3137512-3137531 None:intergenic 30.0%
GATTGAAGAGACAATAATGA+TGG - chr4_2:3137787-3137806 Msa0584130:intron 30.0%
! ATAATGATGGCTGATTTAAG+TGG - chr4_2:3137800-3137819 Msa0584130:intron 30.0%
ATGAAAGAGATGAATTTACC+TGG + chr4_2:3137856-3137875 None:intergenic 30.0%
! ACATTGAGGGTTTTCAAATT+TGG - chr4_2:3137973-3137992 Msa0584130:intron 30.0%
! CATTGAGGGTTTTCAAATTT+GGG - chr4_2:3137974-3137993 Msa0584130:intron 30.0%
CTGAAGATTAAAGTTGTAGA+TGG - chr4_2:3138069-3138088 Msa0584130:intron 30.0%
CAAGTTTAATAAGGTTGCTT+TGG - chr4_2:3138161-3138180 Msa0584130:intron 30.0%
TTTATGCTGCAAAAATGTAC+AGG - chr4_2:3138197-3138216 Msa0584130:intron 30.0%
AAGCATTAGTAATGGCTTAA+GGG + chr4_2:3138239-3138258 None:intergenic 30.0%
! AAAGCATTAGTAATGGCTTA+AGG + chr4_2:3138240-3138259 None:intergenic 30.0%
TTAAGCCATTACTAATGCTT+TGG - chr4_2:3138239-3138258 Msa0584130:intron 30.0%
AAAGCAACCTTATTAGCTAA+TGG + chr4_2:3138265-3138284 None:intergenic 30.0%
ATTAGCTAATAAGGTTGCTT+TGG - chr4_2:3138264-3138283 Msa0584130:intron 30.0%
GTTAGATGGTTACTACAATA+GGG + chr4_2:3138380-3138399 None:intergenic 30.0%
AGTTAGATGGTTACTACAAT+AGG + chr4_2:3138381-3138400 None:intergenic 30.0%
TCCCATTTAATTCAGTTAGA+TGG + chr4_2:3138394-3138413 None:intergenic 30.0%
ATGGAGAGTAAATTGCAAAT+AGG - chr4_2:3138571-3138590 Msa0584130:intron 30.0%
!! TTAACCTTTGGAGTATTGAT+TGG + chr4_2:3138674-3138693 None:intergenic 30.0%
!! TTTAATTTGAAATCAGAGGG+AGG - chr4_2:3138993-3139012 Msa0584130:intron 30.0%
TATATATATATGGGTCTTGC+TGG - chr4_2:3139153-3139172 Msa0584130:CDS 30.0%
ATCTAACAGATATGGTTAGT+TGG - chr4_2:3139507-3139526 Msa0584130:CDS 30.0%
TTTGGAGGAAAATGAGAAAA+AGG + chr4_2:3139588-3139607 None:intergenic 30.0%
! CAACCTTTTCGCATTTTATT+TGG + chr4_2:3139606-3139625 None:intergenic 30.0%
!! TTATCATTGATGGTGTATAG+TGG + chr4_2:3139635-3139654 None:intergenic 30.0%
!!! CCCATTTGTTTTTTTGTTAG+GGG + chr4_2:3139836-3139855 None:intergenic 30.0%
CCCCTAACAAAAAAACAAAT+GGG - chr4_2:3139833-3139852 Msa0584130:intron 30.0%
!!! GCCCATTTGTTTTTTTGTTA+GGG + chr4_2:3139837-3139856 None:intergenic 30.0%
!!! AGCCCATTTGTTTTTTTGTT+AGG + chr4_2:3139838-3139857 None:intergenic 30.0%
!! AAGCCAACCTATTTGTTATT+GGG - chr4_2:3139863-3139882 Msa0584130:intron 30.0%
CCAATCATATTTCACCAAAT+AGG + chr4_2:3140015-3140034 None:intergenic 30.0%
! CCTATTTGGTGAAATATGAT+TGG - chr4_2:3140012-3140031 Msa0584130:intron 30.0%
!!! ATCTTTTTTTTTTGTGGTCG+GGG - chr4_2:3140241-3140260 Msa0584130:CDS 30.0%
GATATAAACCTTCGATTCAA+TGG + chr4_2:3140286-3140305 None:intergenic 30.0%
!! GATTAGTTTGGAATCTTAAG+AGG + chr4_2:3140772-3140791 None:intergenic 30.0%
AATAAGCCAAATATTTGGCA+TGG - chr4_2:3141129-3141148 Msa0584130:CDS 30.0%
GAAAAACCATGCCAAATATT+TGG + chr4_2:3141138-3141157 None:intergenic 30.0%
TATATGCTATGAGCAATCCA+CGG + chr4_2:3135782-3135801 None:intergenic 35.0%
GGGAATATGAGATAGTATGT+TGG + chr4_2:3135830-3135849 None:intergenic 35.0%
GAATGTTGCACAATCAGATA+TGG - chr4_2:3135864-3135883 Msa0584130:three_prime_UTR 35.0%
! TTGAAGAATGATGGTGAGAA+TGG + chr4_2:3136493-3136512 None:intergenic 35.0%
CAGTGACAATTGAAGAATGA+TGG + chr4_2:3136502-3136521 None:intergenic 35.0%
! ACATCCATTTGCTGAAATGT+TGG - chr4_2:3136650-3136669 Msa0584130:intron 35.0%
TATGCCAACATTTCAGCAAA+TGG + chr4_2:3136657-3136676 None:intergenic 35.0%
AAGTAGGAGAAGAGTTTCTT+AGG + chr4_2:3136810-3136829 None:intergenic 35.0%
ATACTTCAATTGGGGAAAGT+AGG + chr4_2:3136826-3136845 None:intergenic 35.0%
GTTGTAATGCAAACTTACGA+TGG + chr4_2:3136861-3136880 None:intergenic 35.0%
!!! TTCCAATTATTTTAGGGGTG+TGG - chr4_2:3136897-3136916 Msa0584130:intron 35.0%
!! AAACTAAAGGTACCCTATGT+AGG + chr4_2:3137017-3137036 None:intergenic 35.0%
TGACTACATTTATGGTACTG+TGG - chr4_2:3137329-3137348 Msa0584130:CDS 35.0%
GGTACCATTTAGATGTTTGA+GGG + chr4_2:3137491-3137510 None:intergenic 35.0%
AGGTACCATTTAGATGTTTG+AGG + chr4_2:3137492-3137511 None:intergenic 35.0%
!! GTTGTTGCTTGTTATCCTTA+TGG + chr4_2:3137701-3137720 None:intergenic 35.0%
ACAAAAAGCGAGAAACCAAA+CGG + chr4_2:3137726-3137745 None:intergenic 35.0%
!! AAGTCTAGGACTTTTAAACC+AGG - chr4_2:3137835-3137854 Msa0584130:intron 35.0%
ACTGCGCAGTTTATATTGAA+AGG - chr4_2:3138037-3138056 Msa0584130:intron 35.0%
TGCTTAACAACATTCCCAAA+GGG - chr4_2:3138115-3138134 Msa0584130:intron 35.0%
! GCAGCATAAAGCATTAGTAA+TGG + chr4_2:3138187-3138206 None:intergenic 35.0%
! AATGGCCAAAGCATTAGTAA+TGG + chr4_2:3138247-3138266 None:intergenic 35.0%
ATCACCAATCAATACTCCAA+AGG - chr4_2:3138667-3138686 Msa0584130:intron 35.0%
CACAAAAACAAGAAAATGGC+CGG + chr4_2:3139046-3139065 None:intergenic 35.0%
! TATGGTTAGTTGGAGATGAA+TGG - chr4_2:3139517-3139536 Msa0584130:CDS 35.0%
! ATGGTTAGTTGGAGATGAAT+GGG - chr4_2:3139518-3139537 Msa0584130:CDS 35.0%
!! CCTTTTCGCATTTTATTTGG+AGG + chr4_2:3139603-3139622 None:intergenic 35.0%
CCTCCAAATAAAATGCGAAA+AGG - chr4_2:3139600-3139619 Msa0584130:CDS 35.0%
GATAGAACTGTCAAATGAGA+TGG - chr4_2:3139788-3139807 Msa0584130:intron 35.0%
!!! TTTTTTTGTTAGGGGCCTTT+CGG + chr4_2:3139828-3139847 None:intergenic 35.0%
GCCCCTAACAAAAAAACAAA+TGG - chr4_2:3139832-3139851 Msa0584130:intron 35.0%
!! CAAGCCAACCTATTTGTTAT+TGG - chr4_2:3139862-3139881 Msa0584130:intron 35.0%
CATCCCAATAACAAATAGGT+TGG + chr4_2:3139869-3139888 None:intergenic 35.0%
TGTGCATCCCAATAACAAAT+AGG + chr4_2:3139873-3139892 None:intergenic 35.0%
! AGCAAGCAATATGGGTTAAT+AGG - chr4_2:3139909-3139928 Msa0584130:intron 35.0%
!! TTTGGGGTACTACTTTTACT+CGG - chr4_2:3140102-3140121 Msa0584130:intron 35.0%
TTACTCGGATTGAAGTTGTT+TGG - chr4_2:3140117-3140136 Msa0584130:intron 35.0%
TACTCGGATTGAAGTTGTTT+GGG - chr4_2:3140118-3140137 Msa0584130:intron 35.0%
AGAATCTACCATTGAATCGA+AGG - chr4_2:3140275-3140294 Msa0584130:CDS 35.0%
ATGAACATTCCATCCTTCTA+AGG + chr4_2:3140683-3140702 None:intergenic 35.0%
! AGTTTGGAATCTTAAGAGGT+AGG + chr4_2:3140768-3140787 None:intergenic 35.0%
! CCAAACTTGTCTGATTAGTT+TGG + chr4_2:3140784-3140803 None:intergenic 35.0%
CCAAACTAATCAGACAAGTT+TGG - chr4_2:3140781-3140800 Msa0584130:intron 35.0%
! AATGACTTGTCAAACTGCTT+TGG + chr4_2:3141007-3141026 None:intergenic 35.0%
ATATGCTATGAGCAATCCAC+GGG + chr4_2:3135781-3135800 None:intergenic 40.0%
AAGAATTGTTGACAAAGGCC+TGG - chr4_2:3135925-3135944 Msa0584130:three_prime_UTR 40.0%
! AATTGGTTTCTCTGTCGACT+TGG + chr4_2:3135958-3135977 None:intergenic 40.0%
AAGTCGACAGAGAAACCAAT+TGG - chr4_2:3135957-3135976 Msa0584130:intron 40.0%
TGTTCTCCACCATTGTAAGT+TGG + chr4_2:3136369-3136388 None:intergenic 40.0%
! TTACAATGGTGGAGAACAGA+TGG - chr4_2:3136371-3136390 Msa0584130:intron 40.0%
CAGTAGTACAAGAATTCCAC+TGG + chr4_2:3136428-3136447 None:intergenic 40.0%
CAGTGGAATTCTTGTACTAC+TGG - chr4_2:3136426-3136445 Msa0584130:intron 40.0%
CACCACACCCCTAAAATAAT+TGG + chr4_2:3136902-3136921 None:intergenic 40.0%
TTGGCTAGATGTTGTGTGTA+AGG - chr4_2:3136947-3136966 Msa0584130:intron 40.0%
CGCTGCATCACACAAAATTT+AGG - chr4_2:3137277-3137296 Msa0584130:intron 40.0%
AGCTTCATATGTAGCATCTG+AGG + chr4_2:3137361-3137380 None:intergenic 40.0%
TCCATCTTTCAACTACGCTT+AGG - chr4_2:3137444-3137463 Msa0584130:CDS 40.0%
CCATCTTTCAACTACGCTTA+GGG - chr4_2:3137445-3137464 Msa0584130:CDS 40.0%
TTTAGATGTTTGAGGGTTGG+AGG + chr4_2:3137484-3137503 None:intergenic 40.0%
CCATTTAGATGTTTGAGGGT+TGG + chr4_2:3137487-3137506 None:intergenic 40.0%
CCAACCCTCAAACATCTAAA+TGG - chr4_2:3137484-3137503 Msa0584130:intron 40.0%
AGCATAGAGCACGTTGAAAA+AGG + chr4_2:3137528-3137547 None:intergenic 40.0%
! ATGCTTGTGACTTGGATTAG+TGG - chr4_2:3137543-3137562 Msa0584130:intron 40.0%
!! TGCTTGTGACTTGGATTAGT+GGG - chr4_2:3137544-3137563 Msa0584130:intron 40.0%
CAAAAAGCGAGAAACCAAAC+GGG + chr4_2:3137725-3137744 None:intergenic 40.0%
! GGCTGATTTAAGTGGAGTAA+AGG - chr4_2:3137808-3137827 Msa0584130:intron 40.0%
GGAGTAAAGGTGATAAGTCT+AGG - chr4_2:3137821-3137840 Msa0584130:intron 40.0%
GTGCTTAACAACATTCCCAA+AGG - chr4_2:3138114-3138133 Msa0584130:intron 40.0%
ACTCAGGGGCAAGTTTAATA+AGG - chr4_2:3138152-3138171 Msa0584130:intron 40.0%
GCTTTGGCCATTAGCTAATA+AGG - chr4_2:3138255-3138274 Msa0584130:intron 40.0%
AAAGAAGAGGAAGCAGTTAG+AGG + chr4_2:3139119-3139138 None:intergenic 40.0%
AGCAAATGCAAGCATCAGAA+GGG - chr4_2:3139550-3139569 Msa0584130:CDS 40.0%
!! TCATTGATGGTGTATAGTGG+TGG + chr4_2:3139632-3139651 None:intergenic 40.0%
GCAGTAGGACTTATCATTGA+TGG + chr4_2:3139645-3139664 None:intergenic 40.0%
!!! TTTTTTGTTAGGGGCCTTTC+GGG + chr4_2:3139827-3139846 None:intergenic 40.0%
GGAATAGTTCATGCCTTAGA+AGG - chr4_2:3140667-3140686 Msa0584130:intron 40.0%
TAGTTCATGCCTTAGAAGGA+TGG - chr4_2:3140671-3140690 Msa0584130:intron 40.0%
TCTTAAGAGGTAGGTAACCA+TGG + chr4_2:3140759-3140778 None:intergenic 40.0%
TCACGCTACCAAACTGCTAA+AGG - chr4_2:3135896-3135915 Msa0584130:three_prime_UTR 45.0%
! CATTGTAAGTTGGCAGCCAT+AGG + chr4_2:3136359-3136378 None:intergenic 45.0%
CTATGGCTGCCAACTTACAA+TGG - chr4_2:3136357-3136376 Msa0584130:intron 45.0%
ATTGTCACTGAGCCTATCAC+TGG - chr4_2:3136512-3136531 Msa0584130:intron 45.0%
!! CTAAAGGTACCCTATGTAGG+CGG + chr4_2:3137014-3137033 None:intergenic 45.0%
TACTCAAGACGAACAGAGAC+CGG + chr4_2:3137055-3137074 None:intergenic 45.0%
TGTGTTAAGTGCACCACATC+TGG + chr4_2:3137408-3137427 None:intergenic 45.0%
CCCTAAGCGTAGTTGAAAGA+TGG + chr4_2:3137448-3137467 None:intergenic 45.0%
AAGATCTCAAGCTGCAGTGT+TGG - chr4_2:3137598-3137617 Msa0584130:intron 45.0%
AACAAGCAACAACACCCGTT+TGG - chr4_2:3137708-3137727 Msa0584130:intron 45.0%
! AGCACTTGATTGGTCCCTTT+GGG + chr4_2:3138132-3138151 None:intergenic 45.0%
! TAGCACTTGATTGGTCCCTT+TGG + chr4_2:3138133-3138152 None:intergenic 45.0%
! GACCAATCAAGTGCTACTCA+GGG - chr4_2:3138137-3138156 Msa0584130:intron 45.0%
! ACCAATCAAGTGCTACTCAG+GGG - chr4_2:3138138-3138157 Msa0584130:intron 45.0%
AGCTGAAAGAGCTTGAACGA+AGG - chr4_2:3138615-3138634 Msa0584130:intron 45.0%
GCTGAAAGAGCTTGAACGAA+GGG - chr4_2:3138616-3138635 Msa0584130:intron 45.0%
TGATAGAGCCAAGCTTCCAT+TGG + chr4_2:3138651-3138670 None:intergenic 45.0%
TGAAATCAGAGGGAGGATTG+TGG - chr4_2:3139000-3139019 Msa0584130:intron 45.0%
TTGTGGTGCTTCCTCTTACA+AGG - chr4_2:3139017-3139036 Msa0584130:intron 45.0%
GTTATGCTAGAAGCCATCCA+TGG + chr4_2:3139289-3139308 None:intergenic 45.0%
GAGCAAATGCAAGCATCAGA+AGG - chr4_2:3139549-3139568 Msa0584130:CDS 45.0%
TGCAGGTTTATGACTGCAGT+AGG + chr4_2:3139660-3139679 None:intergenic 45.0%
CATAAACCTGCATTCGTGTG+AGG - chr4_2:3139668-3139687 Msa0584130:CDS 45.0%
CAAGCACTCATGACTCTTGT+TGG + chr4_2:3140637-3140656 None:intergenic 45.0%
CAACAAGAGTCATGAGTGCT+TGG - chr4_2:3140635-3140654 Msa0584130:CDS 45.0%
GGATGGAATGTTCATGAGTG+TGG - chr4_2:3140688-3140707 Msa0584130:intron 45.0%
AGTTCGTGATTCTAAGCCCG+TGG - chr4_2:3135762-3135781 Msa0584130:three_prime_UTR 50.0%
!! TGTCGACTTGGTCGAATTCC+AGG + chr4_2:3135946-3135965 None:intergenic 50.0%
TGGCTGCCAACTTACAATGG+TGG - chr4_2:3136360-3136379 Msa0584130:intron 50.0%
CTTACAGCTCTCTTGCATGC+TGG - chr4_2:3136401-3136420 Msa0584130:intron 50.0%
TCGTTTGTGGCTGCACTGTA+TGG - chr4_2:3136726-3136745 Msa0584130:intron 50.0%
CCTACGTGCAACATCCATGA+GGG + chr4_2:3136925-3136944 None:intergenic 50.0%
CCTCATGGATGTTGCACGTA+GGG - chr4_2:3136923-3136942 Msa0584130:intron 50.0%
TGGATGTTGCACGTAGGGTT+TGG - chr4_2:3136928-3136947 Msa0584130:intron 50.0%
AGCTTGTGTGAAGAGACCAG+AGG - chr4_2:3137377-3137396 Msa0584130:CDS 50.0%
ACCAGAGGAATCACCAGATG+TGG - chr4_2:3137392-3137411 Msa0584130:CDS 50.0%
ACCACATCTGGTGATTCCTC+TGG + chr4_2:3137396-3137415 None:intergenic 50.0%
TGTTTGAGGGTTGGAGGCTA+AGG + chr4_2:3137478-3137497 None:intergenic 50.0%
CGTGCTCTATGCTTGTGACT+TGG - chr4_2:3137535-3137554 Msa0584130:intron 50.0%
! GGACCAATCAAGTGCTACTC+AGG - chr4_2:3138136-3138155 Msa0584130:intron 50.0%
AGCCAAGCTTCCATTGGACA+TGG + chr4_2:3138645-3138664 None:intergenic 50.0%
GCTTCCTCTTACAAGGTTGC+CGG - chr4_2:3139024-3139043 Msa0584130:intron 50.0%
AACCTGCATTCGTGTGAGGT+TGG - chr4_2:3139672-3139691 Msa0584130:CDS 50.0%
TTCCAACCTCACACGAATGC+AGG + chr4_2:3139677-3139696 None:intergenic 50.0%
AATGAGATGGTCGATCCGAG+AGG - chr4_2:3139801-3139820 Msa0584130:intron 50.0%
TGGGAAGCAAGTATTCGCCA+TGG - chr4_2:3140739-3140758 Msa0584130:intron 50.0%
TCTCTTGCATGCTGGACCAG+TGG - chr4_2:3136409-3136428 Msa0584130:intron 55.0%
CCCTCATGGATGTTGCACGT+AGG - chr4_2:3136922-3136941 Msa0584130:intron 55.0%
CCCTACGTGCAACATCCATG+AGG + chr4_2:3136926-3136945 None:intergenic 55.0%
TTCGGGTGTTCCGCCTACAT+AGG - chr4_2:3137001-3137020 Msa0584130:intron 55.0%
TCGGGTGTTCCGCCTACATA+GGG - chr4_2:3137002-3137021 Msa0584130:intron 55.0%
GCCCCTGAGTAGCACTTGAT+TGG + chr4_2:3138142-3138161 None:intergenic 55.0%
CGCCATGTCCAATGGAAGCT+TGG - chr4_2:3138640-3138659 Msa0584130:intron 55.0%
ATGGCCGGCAACCTTGTAAG+AGG + chr4_2:3139031-3139050 None:intergenic 55.0%
ATGAGTGCTTGGCGCATTGC+TGG - chr4_2:3140646-3140665 Msa0584130:CDS 55.0%
! TTAGGGGTGTGGTGCCCTCA+TGG - chr4_2:3136908-3136927 Msa0584130:intron 60.0%
CGAAGGGTCGCCATGTCCAA+TGG - chr4_2:3138632-3138651 Msa0584130:intron 60.0%
GTCGATCCGAGAGGCCCGAA+AGG - chr4_2:3139810-3139829 Msa0584130:intron 65.0%
TAGGGGCCTTTCGGGCCTCT+CGG + chr4_2:3139819-3139838 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 3135752 3141233 3135752 ID=Msa0584130;Name=Msa0584130
chr4_2 mRNA 3135752 3141233 3135752 ID=Msa0584130-mRNA-1;Parent=Msa0584130;Name=Msa0584130-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0.88|0.8|1|0.88|0.8|10|411|593
chr4_2 exon 3135752 3135964 3135752 ID=Msa0584130-mRNA-1:exon:924;Parent=Msa0584130-mRNA-1
chr4_2 exon 3135998 3136360 3135998 ID=Msa0584130-mRNA-1:exon:923;Parent=Msa0584130-mRNA-1
chr4_2 exon 3137296 3137469 3137296 ID=Msa0584130-mRNA-1:exon:922;Parent=Msa0584130-mRNA-1
chr4_2 exon 3138297 3138392 3138297 ID=Msa0584130-mRNA-1:exon:921;Parent=Msa0584130-mRNA-1
chr4_2 exon 3138767 3138967 3138767 ID=Msa0584130-mRNA-1:exon:920;Parent=Msa0584130-mRNA-1
chr4_2 exon 3139129 3139218 3139129 ID=Msa0584130-mRNA-1:exon:919;Parent=Msa0584130-mRNA-1
chr4_2 exon 3139341 3139716 3139341 ID=Msa0584130-mRNA-1:exon:918;Parent=Msa0584130-mRNA-1
chr4_2 exon 3140123 3140342 3140123 ID=Msa0584130-mRNA-1:exon:917;Parent=Msa0584130-mRNA-1
chr4_2 exon 3140452 3140684 3140452 ID=Msa0584130-mRNA-1:exon:916;Parent=Msa0584130-mRNA-1
chr4_2 exon 3141007 3141233 3141007 ID=Msa0584130-mRNA-1:exon:915;Parent=Msa0584130-mRNA-1
chr4_2 CDS 3141007 3141233 3141007 ID=Msa0584130-mRNA-1:cds;Parent=Msa0584130-mRNA-1
chr4_2 CDS 3140452 3140684 3140452 ID=Msa0584130-mRNA-1:cds;Parent=Msa0584130-mRNA-1
chr4_2 CDS 3140123 3140342 3140123 ID=Msa0584130-mRNA-1:cds;Parent=Msa0584130-mRNA-1
chr4_2 CDS 3139341 3139716 3139341 ID=Msa0584130-mRNA-1:cds;Parent=Msa0584130-mRNA-1
chr4_2 CDS 3139129 3139218 3139129 ID=Msa0584130-mRNA-1:cds;Parent=Msa0584130-mRNA-1
chr4_2 CDS 3138767 3138967 3138767 ID=Msa0584130-mRNA-1:cds;Parent=Msa0584130-mRNA-1
chr4_2 CDS 3138297 3138392 3138297 ID=Msa0584130-mRNA-1:cds;Parent=Msa0584130-mRNA-1
chr4_2 CDS 3137296 3137469 3137296 ID=Msa0584130-mRNA-1:cds;Parent=Msa0584130-mRNA-1
chr4_2 CDS 3136196 3136360 3136196 ID=Msa0584130-mRNA-1:cds;Parent=Msa0584130-mRNA-1
chr4_2 three_prime_UTR 3135998 3136195 3135998 ID=Msa0584130-mRNA-1:three_prime_utr;Parent=Msa0584130-mRNA-1
chr4_2 three_prime_UTR 3135752 3135964 3135752 ID=Msa0584130-mRNA-1:three_prime_utr;Parent=Msa0584130-mRNA-1
Gene Sequence

>Msa0584130

ATGAACACTAAGTTCGTGATTCTAAGCCCGTGGATTGCTCATAGCATATACTCTTTTATATGGGTGGAAAGAGACCCAACATACTATCTCATATTCCCTTATATATTCGTCAGAATGTTGCACAATCAGATATGGATTTCTATCTCACGCTACCAAACTGCTAAAGGAAAAAGAAGAATTGTTGACAAAGGCCTGGAATTCGACCAAGTCGACAGAGAAACCAATTGGGATGATAAAATATTGTTCACTGCATTAATGTTTTATATACTTTACGCAATATTTCCTATGGCTGCCAACTTACAATGGTGGAGAACAGATGGTGTGATTCTTACAGCTCTCTTGCATGCTGGACCAGTGGAATTCTTGTACTACTGGCTACATAGAGCACTTCATCATCATTATCTATATTCTCGTTACCATTCTCACCATCATTCTTCAATTGTCACTGAGCCTATCACTGCGGTGACACATCCATTTGCTGAAATGTTGGCATATTTCACACTTTTTCTTATCCCAATGTTGACAACATTGTTCATGAAAAAATCGTTTGTGGCTGCACTGTATGGTTATATCTTTTACATCGATTTTATGAACAACATGGGTCATTGCAATTTTGAGTTCTTTCCTAAGAAACTCTTCTCCTACTTTCCCCAATTGAAGTATTTCACATACACACCATCGTTTCACTCGCTGCATCACACAAAATTTAGGTCAAATTACTCACTTTTCATGCCTATATATGACTACATTTATGGTACTGTGGATGCATCCTCAGATGCTACATATGAAGCTTGTGTGAAGAGACCAGAGGAATCACCAGATGTGGTGCACTTAACACATTTAACAACACTTGATTCCATCTTTCAACTACGCTTAGGGTTTGCTTCCTTAGCCTCCAACCCTCAAACATCTAAATGGTACCTCAATTTAATGTGGCCTTTTTCAACGTGCTCTATGCTTGTGACTTGGATTAGTGGGCATGCCATTGTTTTAGAAAGTAACTTCTTCAAAGATCTCAAGCTGCAGTGTTGGCTTATACCAAGATTTAAAACACAACGTATCAAGATAAACAAATTGATTGAAGAGACAATAATGATGGCTGATTTAAGTGGAGTAAAGGTGATAAGTCTAGGACTTTTAAACCAGAGACAAGAGATGAGTGCACACTGCGCAGTTTATATTGAAAGGCTTCCAAATCTGAAGATTAAAGTTGTAGATGGTAGTAGCTTAGTTGTTGCTACTGTGCTTAACAACATTCCCAAAGGGACCAATCAAGTGCTACTCAGGGGCAAGTTTAATAAGGTTGCTTTGGCCATTACTAATGCTTTATGCTGCAAAAATGTACAGGTGACTGTATTATATAGGGATGAGCTGAAAGAGCTTGAACGAAGGGTCGCCATGTCCAATGGAAGCTTGGCTCTATCACCAATCAATACTCCAAAGATATGGTTAGTTGGAGATGAATGGGATGAAGATGAGCAAATGCAAGCATCAGAAGGGTCATTGTTCATACCTTTTTCTCATTTTCCTCCAAATAAAATGCGAAAAGGTTGCTTCCACCACTATACACCATCAATGATAAGTCCTACTGCAGTCATAAACCTGCATTCGTGTGAGAATTGGCTTCCAACAAGAGTCATGAGTGCTTGGCGCATTGCTGGAATAGTTCATGCCTTAGAAGGATGGAATGTTCATGAGTGTGGTGACACTGTATTTGACATTGAGAAAGTATGGGAAGCAAGTATTCGCCATGGTTACCTACCTCTTAAGATTCCAAACTAA

Protein sequence

>Msa0584130

MNTKFVILSPWIAHSIYSFIWVERDPTYYLIFPYIFVRMLHNQIWISISRYQTAKGKRRIVDKGLEFDQVDRETNWDDKILFTALMFYILYAIFPMAANLQWWRTDGVILTALLHAGPVEFLYYWLHRALHHHYLYSRYHSHHHSSIVTEPITAVTHPFAEMLAYFTLFLIPMLTTLFMKKSFVAALYGYIFYIDFMNNMGHCNFEFFPKKLFSYFPQLKYFTYTPSFHSLHHTKFRSNYSLFMPIYDYIYGTVDASSDATYEACVKRPEESPDVVHLTHLTTLDSIFQLRLGFASLASNPQTSKWYLNLMWPFSTCSMLVTWISGHAIVLESNFFKDLKLQCWLIPRFKTQRIKINKLIEETIMMADLSGVKVISLGLLNQRQEMSAHCAVYIERLPNLKIKVVDGSSLVVATVLNNIPKGTNQVLLRGKFNKVALAITNALCCKNVQVTVLYRDELKELERRVAMSNGSLALSPINTPKIWLVGDEWDEDEQMQASEGSLFIPFSHFPPNKMRKGCFHHYTPSMISPTAVINLHSCENWLPTRVMSAWRIAGIVHALEGWNVHECGDTVFDIEKVWEASIRHGYLPLKIPN*