Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0683420 | AES88742.2 | 42.017 | 119 | 69 | 0 | 156 | 274 | 448 | 566 | 5.08e-25 | 119 |
| Msa0683420 | AES88742.2 | 97.313 | 335 | 7 | 1 | 1 | 335 | 1 | 333 | 0.0 | 669 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0683420 | sp|O48963|PHOT1_ARATH | 64.162 | 346 | 91 | 10 | 13 | 329 | 18 | 359 | 1.51e-132 | 406 |
| Msa0683420 | sp|O48963|PHOT1_ARATH | 41.176 | 119 | 70 | 0 | 156 | 274 | 465 | 583 | 1.21e-26 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0683420 | G7JSJ7 | 42.017 | 119 | 69 | 0 | 156 | 274 | 448 | 566 | 2.43e-25 | 119 |
| Msa0683420 | G7JSJ7 | 97.313 | 335 | 7 | 1 | 1 | 335 | 1 | 333 | 0.0 | 669 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0623760 | Msa0683420 | 0.817149 | 3.829599e-52 | -8.615850e-47 |
| Msa0643590 | Msa0683420 | 0.817175 | 3.779465e-52 | -8.615850e-47 |
| Msa0683420 | Msa1224140 | 0.801096 | 1.057984e-48 | -8.615850e-47 |
| Msa0683420 | Msa1224150 | 0.800439 | 1.440300e-48 | -8.615850e-47 |
| Msa0683420 | Msa1437690 | 0.809602 | 1.745197e-50 | -8.615850e-47 |
| Msa0247340 | Msa0683420 | 0.815421 | 9.325949e-52 | -8.615850e-47 |
| Msa0285710 | Msa0683420 | 0.800980 | 1.117132e-48 | -8.615850e-47 |
| Msa0547790 | Msa0683420 | 0.866575 | 2.580107e-65 | -8.615850e-47 |
| Msa0602670 | Msa0683420 | 0.846615 | 1.943832e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0683420 | MtrunA17_Chr2g0327561 | 69.846 | 325 | 68 | 10 | 13 | 330 | 19 | 320 | 3.88e-140 | 422 |
| Msa0683420 | MtrunA17_Chr2g0327561 | 41.463 | 123 | 72 | 0 | 152 | 274 | 426 | 548 | 1.23e-28 | 117 |
| Msa0683420 | MtrunA17_Chr4g0030341 | 95.408 | 196 | 7 | 1 | 8 | 203 | 1 | 194 | 8.81e-133 | 378 |
| Msa0683420 | MtrunA17_Chr8g0369091 | 59.664 | 238 | 90 | 4 | 92 | 324 | 48 | 284 | 8.97e-87 | 281 |
| Msa0683420 | MtrunA17_Chr8g0369091 | 35.758 | 165 | 101 | 3 | 156 | 319 | 401 | 561 | 1.32e-27 | 114 |
| Msa0683420 | MtrunA17_Chr4g0030351 | 97.778 | 90 | 2 | 0 | 206 | 295 | 1 | 90 | 4.96e-57 | 181 |
| Msa0683420 | MtrunA17_Chr5g0415981 | 47.115 | 104 | 55 | 0 | 165 | 268 | 250 | 353 | 5.52e-29 | 116 |
| Msa0683420 | MtrunA17_Chr5g0415981 | 36.634 | 101 | 63 | 1 | 168 | 267 | 29 | 129 | 1.09e-16 | 80.9 |
| Msa0683420 | MtrunA17_Chr4g0030361 | 42.017 | 119 | 69 | 0 | 156 | 274 | 111 | 229 | 1.18e-28 | 117 |
| Msa0683420 | MtrunA17_Chr8g0391901 | 43.636 | 110 | 53 | 1 | 167 | 267 | 63 | 172 | 4.74e-23 | 100 |
| Msa0683420 | MtrunA17_Chr2g0297971 | 35.333 | 150 | 80 | 3 | 168 | 308 | 42 | 183 | 1.28e-21 | 96.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0683420 | AT3G45780.2 | 64.162 | 346 | 91 | 10 | 13 | 329 | 18 | 359 | 1.54e-133 | 406 |
| Msa0683420 | AT3G45780.2 | 41.176 | 119 | 70 | 0 | 156 | 274 | 465 | 583 | 1.23e-27 | 115 |
| Msa0683420 | AT3G45780.1 | 64.162 | 346 | 91 | 10 | 13 | 329 | 18 | 359 | 1.54e-133 | 406 |
| Msa0683420 | AT3G45780.1 | 41.176 | 119 | 70 | 0 | 156 | 274 | 465 | 583 | 1.23e-27 | 115 |
| Msa0683420 | AT5G58140.4 | 46.835 | 316 | 129 | 7 | 16 | 330 | 20 | 297 | 1.81e-83 | 268 |
| Msa0683420 | AT5G58140.4 | 35.204 | 196 | 116 | 5 | 135 | 328 | 362 | 548 | 6.39e-29 | 119 |
| Msa0683420 | AT5G58140.3 | 46.835 | 316 | 129 | 7 | 16 | 330 | 20 | 297 | 1.22e-81 | 268 |
| Msa0683420 | AT5G58140.3 | 35.204 | 196 | 116 | 5 | 135 | 328 | 362 | 548 | 1.50e-28 | 118 |
| Msa0683420 | AT5G58140.6 | 46.835 | 316 | 129 | 7 | 16 | 330 | 20 | 297 | 2.32e-81 | 267 |
| Msa0683420 | AT5G58140.6 | 35.204 | 196 | 116 | 5 | 135 | 328 | 362 | 548 | 1.22e-28 | 118 |
| Msa0683420 | AT5G58140.7 | 46.835 | 316 | 129 | 7 | 16 | 330 | 20 | 297 | 2.32e-81 | 267 |
| Msa0683420 | AT5G58140.7 | 35.204 | 196 | 116 | 5 | 135 | 328 | 362 | 548 | 1.22e-28 | 118 |
| Msa0683420 | AT5G58140.5 | 46.835 | 316 | 129 | 7 | 16 | 330 | 20 | 297 | 2.32e-81 | 267 |
| Msa0683420 | AT5G58140.5 | 35.204 | 196 | 116 | 5 | 135 | 328 | 362 | 548 | 1.22e-28 | 118 |
| Msa0683420 | AT5G58140.2 | 46.835 | 316 | 129 | 7 | 16 | 330 | 20 | 297 | 2.32e-81 | 267 |
| Msa0683420 | AT5G58140.2 | 35.204 | 196 | 116 | 5 | 135 | 328 | 362 | 548 | 1.22e-28 | 118 |
| Msa0683420 | AT5G58140.1 | 46.835 | 316 | 129 | 7 | 16 | 330 | 20 | 297 | 2.32e-81 | 267 |
| Msa0683420 | AT5G58140.1 | 35.204 | 196 | 116 | 5 | 135 | 328 | 362 | 548 | 1.22e-28 | 118 |
| Msa0683420 | AT2G02710.2 | 40.876 | 137 | 79 | 1 | 147 | 283 | 240 | 374 | 1.34e-31 | 124 |
| Msa0683420 | AT2G02710.2 | 36.522 | 115 | 72 | 1 | 157 | 270 | 28 | 142 | 4.34e-20 | 91.3 |
| Msa0683420 | AT2G02710.1 | 40.288 | 139 | 79 | 2 | 147 | 283 | 240 | 376 | 8.65e-30 | 119 |
| Msa0683420 | AT2G02710.1 | 36.522 | 115 | 72 | 1 | 157 | 270 | 28 | 142 | 4.32e-20 | 91.3 |
| Msa0683420 | AT2G02710.3 | 40.000 | 115 | 67 | 1 | 147 | 259 | 240 | 354 | 6.78e-26 | 107 |
| Msa0683420 | AT2G02710.3 | 36.522 | 115 | 72 | 1 | 157 | 270 | 28 | 142 | 2.93e-20 | 91.7 |
| Msa0683420 | AT1G68050.1 | 46.364 | 110 | 50 | 1 | 167 | 267 | 55 | 164 | 1.81e-25 | 108 |
| Msa0683420 | AT2G02710.4 | 36.522 | 115 | 72 | 1 | 157 | 270 | 28 | 142 | 2.78e-20 | 90.9 |
| Msa0683420 | AT2G02710.4 | 41.096 | 73 | 43 | 0 | 147 | 219 | 240 | 312 | 4.92e-14 | 72.8 |
| Msa0683420 | AT2G18915.2 | 44.037 | 109 | 51 | 2 | 168 | 267 | 47 | 154 | 5.95e-20 | 92.0 |
| Msa0683420 | AT5G57360.1 | 34.266 | 143 | 85 | 1 | 136 | 269 | 15 | 157 | 2.95e-18 | 87.0 |
| Msa0683420 | AT5G57360.2 | 34.266 | 143 | 85 | 1 | 136 | 269 | 15 | 157 | 3.86e-18 | 86.7 |
| Msa0683420 | AT2G18915.1 | 42.000 | 100 | 56 | 2 | 168 | 267 | 47 | 144 | 1.32e-14 | 75.9 |
Find 120 sgRNAs with CRISPR-Local
Find 291 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATATATAGTTAAACAATT+TGG | 0.184338 | 4_4:+45889408 | Msa0683420:five_prime_UTR |
| TTGTTGGAATGGCATATATT+CGG | 0.310216 | 4_4:-45889300 | None:intergenic |
| AAGTCCCGGTCGCCACTTCC+TGG | 0.313275 | 4_4:+45889732 | Msa0683420:CDS |
| GTTTCTTCCTATAACCTCTT+TGG | 0.325178 | 4_4:-45890113 | None:intergenic |
| CGTTGTGCTGCAGCGGAGCC+AGG | 0.325857 | 4_4:-45889797 | None:intergenic |
| GAATTGATTGGATTAGGATT+TGG | 0.333535 | 4_4:-45889632 | None:intergenic |
| GGCAAAATCCTCAAACTTAT+CGG | 0.337645 | 4_4:+45891380 | Msa0683420:CDS |
| GCTTGTTGTCCAAGTGTTCC+AGG | 0.356895 | 4_4:-45889654 | None:intergenic |
| CTTATCTTTGCCACATCATT+CGG | 0.365334 | 4_4:-45891248 | None:intergenic |
| CCTCGATGGTCTCTTGTAAA+TGG | 0.367447 | 4_4:-45889557 | None:intergenic |
| AGTGAGATAGTGTTAGTTGT+TGG | 0.376474 | 4_4:-45889316 | None:intergenic |
| GATGACGGAAGGGAGTTTAG+AGG | 0.382669 | 4_4:+45889953 | Msa0683420:CDS |
| TAGAGGAATACCGAGAGTTT+CGG | 0.384537 | 4_4:+45889970 | Msa0683420:CDS |
| TGTTGGAATGGCATATATTC+GGG | 0.388557 | 4_4:-45889299 | None:intergenic |
| ATCCTAATCCAATCAATTCC+TGG | 0.388998 | 4_4:+45889636 | Msa0683420:CDS |
| TCAATGCAACTGATTTGTTT+TGG | 0.389855 | 4_4:-45894561 | None:intergenic |
| ATCATATCGAATCAAGGATT+CGG | 0.390729 | 4_4:-45891587 | None:intergenic |
| TATACTTCCAAAGAGGTTAT+AGG | 0.390943 | 4_4:+45890106 | Msa0683420:CDS |
| TGTGTTTGCACAAAGGTTAT+TGG | 0.391037 | 4_4:-45894510 | None:intergenic |
| TTCCAGGAATTGATTGGATT+AGG | 0.392406 | 4_4:-45889638 | None:intergenic |
| GGACTTGAGAGATGCACTTT+CGG | 0.407578 | 4_4:+45889994 | Msa0683420:CDS |
| AACAATTCGATGAGAAGTTC+CGG | 0.407589 | 4_4:+45889920 | Msa0683420:CDS |
| CGGGACTTCATCAGAGTTGA+TGG | 0.408581 | 4_4:-45889717 | None:intergenic |
| GAGCCAGGTTCGTTGGAAAC+TGG | 0.418622 | 4_4:-45889782 | None:intergenic |
| GGTTTCTTTGAGTGCCATCC+AGG | 0.420489 | 4_4:-45889750 | None:intergenic |
| CAAGTGTTCCAGGAATTGAT+TGG | 0.425473 | 4_4:-45889644 | None:intergenic |
| CGCTGCTCGTTGTGCTGCAG+CGG | 0.433623 | 4_4:-45889804 | None:intergenic |
| TGAGGAAATTGGGAGGTGAT+TGG | 0.435373 | 4_4:-45894534 | None:intergenic |
| TGTTTCTGATGCTACTAAAC+CGG | 0.440296 | 4_4:+45890036 | Msa0683420:CDS |
| CGGTTGTTGTGGAGTTTCGT+TGG | 0.449324 | 4_4:-45889684 | None:intergenic |
| GGAGTGGCAGTTAGAAGCTC+AGG | 0.450061 | 4_4:+45889875 | Msa0683420:CDS |
| TTGAAAACTGATTCGGAGAC+GGG | 0.451705 | 4_4:+45889842 | Msa0683420:CDS |
| TCATATCGAATCAAGGATTC+GGG | 0.453072 | 4_4:-45891586 | None:intergenic |
| CAATCAATTCCTGGAACACT+TGG | 0.453132 | 4_4:+45889645 | Msa0683420:CDS |
| AAGAGGTTATAGGAAGAAAC+TGG | 0.453235 | 4_4:+45890116 | Msa0683420:CDS |
| GCCATCCAGGAAGTGGCGAC+CGG | 0.456072 | 4_4:-45889737 | None:intergenic |
| GAAGCTCAGGTGGTGGTTCA+AGG | 0.457049 | 4_4:+45889888 | Msa0683420:CDS |
| CAAGGATTCGGGCAATCCAT+TGG | 0.459035 | 4_4:-45891575 | None:intergenic |
| GGGATGAAGTCGGTTTATGC+AGG | 0.462185 | 4_4:+45891211 | Msa0683420:intron |
| GGTTATTGGTATTGTGGAAG+TGG | 0.462819 | 4_4:-45894496 | None:intergenic |
| AGCACAACGAGCAGCGGAGT+GGG | 0.463532 | 4_4:+45889811 | Msa0683420:CDS |
| CACAAAGGTTATTGGTATTG+TGG | 0.465198 | 4_4:-45894502 | None:intergenic |
| GTTAGTGTTGAAAACTGATT+CGG | 0.467574 | 4_4:+45889835 | Msa0683420:CDS |
| GCTGATTCACTGAGTGACCT+TGG | 0.473690 | 4_4:-45892431 | None:intergenic |
| CCACCAGTTTCCAACGAACC+TGG | 0.492333 | 4_4:+45889779 | Msa0683420:CDS |
| TTACTAAATTACAAGAAAGA+TGG | 0.493344 | 4_4:+45891308 | Msa0683420:CDS |
| TTTGAGTGCCATCCAGGAAG+TGG | 0.495450 | 4_4:-45889744 | None:intergenic |
| GCATACATGATCGGGTAATC+CGG | 0.495734 | 4_4:-45890055 | None:intergenic |
| ATACCCACCCGATAAGTTTG+AGG | 0.497020 | 4_4:-45891388 | None:intergenic |
| CCGATCATGTATGCTAGTGC+TGG | 0.497244 | 4_4:+45890064 | Msa0683420:CDS |
| CGCTGCAGCACAACGAGCAG+CGG | 0.498277 | 4_4:+45889805 | Msa0683420:CDS |
| AAGGATTCGGGCAATCCATT+GGG | 0.500326 | 4_4:-45891574 | None:intergenic |
| GACGGGGAAGCCACAAGGAG+TGG | 0.505094 | 4_4:+45889859 | Msa0683420:CDS |
| GAGTCACGCGTCGGTTGTTG+TGG | 0.506668 | 4_4:-45889695 | None:intergenic |
| ATAAGAGAATCACTAGCAGC+TGG | 0.508765 | 4_4:+45891266 | Msa0683420:CDS |
| GCAAAATCCTCAAACTTATC+GGG | 0.511924 | 4_4:+45891381 | Msa0683420:CDS |
| GGGACGTAACATCTTCTCCT+TGG | 0.513072 | 4_4:-45891554 | None:intergenic |
| CAGCACTAGCATACATGATC+GGG | 0.514608 | 4_4:-45890063 | None:intergenic |
| CTTCTAACTGCCACTCCTTG+TGG | 0.519509 | 4_4:-45889869 | None:intergenic |
| GATACACTCATCAATGAGAA+AGG | 0.522021 | 4_4:+45894582 | Msa0683420:CDS |
| GCACAACGAGCAGCGGAGTG+GGG | 0.522822 | 4_4:+45889812 | Msa0683420:CDS |
| GCTCCCATCAAGGACGAAAA+CGG | 0.527938 | 4_4:+45891359 | Msa0683420:CDS |
| TACTAAATTACAAGAAAGAT+GGG | 0.528838 | 4_4:+45891309 | Msa0683420:CDS |
| CATACCATCATATCGAATCA+AGG | 0.530527 | 4_4:-45891593 | None:intergenic |
| TTTGTTGGTACTTTGATGAA+GGG | 0.530969 | 4_4:-45892464 | None:intergenic |
| CCCGGTCGCCACTTCCTGGA+TGG | 0.533690 | 4_4:+45889736 | Msa0683420:CDS |
| CCATCCAGGAAGTGGCGACC+GGG | 0.533821 | 4_4:-45889736 | None:intergenic |
| ATAGTGAGAAGGTTCCAAAA+AGG | 0.544728 | 4_4:-45891335 | None:intergenic |
| CATCAACTCTGATGAAGTCC+CGG | 0.547348 | 4_4:+45889718 | Msa0683420:CDS |
| GAATCCTTGATTCGATATGA+TGG | 0.550034 | 4_4:+45891589 | Msa0683420:CDS |
| CTCAAGTCCTCCGAAACTCT+CGG | 0.556551 | 4_4:-45889980 | None:intergenic |
| CACAACGAGCAGCGGAGTGG+GGG | 0.558884 | 4_4:+45889813 | Msa0683420:CDS |
| ATCAGTAAATGAGTTGGTAG+AGG | 0.561438 | 4_4:+45892394 | Msa0683420:CDS |
| GGAAGTGGTAAGATCATGAA+TGG | 0.566453 | 4_4:-45894481 | None:intergenic |
| GTTGAAAACTGATTCGGAGA+CGG | 0.568845 | 4_4:+45889841 | Msa0683420:CDS |
| AGACTTCAAGTGAGCCTCGA+TGG | 0.569008 | 4_4:-45889571 | None:intergenic |
| GTGAGAGTTCTGATGACGGA+AGG | 0.569924 | 4_4:+45889942 | Msa0683420:CDS |
| TGCAGCGGAGCCAGGTTCGT+TGG | 0.571522 | 4_4:-45889789 | None:intergenic |
| CCAGCACTAGCATACATGAT+CGG | 0.574273 | 4_4:-45890064 | None:intergenic |
| AAACTCATCAGTAAATGAGT+TGG | 0.574755 | 4_4:+45892388 | Msa0683420:CDS |
| TCTCACTATTGCTCCCATCA+AGG | 0.577223 | 4_4:+45891349 | Msa0683420:CDS |
| GATAGTGTTAGTTGTTGGAA+TGG | 0.578196 | 4_4:-45889311 | None:intergenic |
| TCCGTCATCAGAACTCTCAC+CGG | 0.578323 | 4_4:-45889939 | None:intergenic |
| GCAGTTAGAAGCTCAGGTGG+TGG | 0.583862 | 4_4:+45889881 | Msa0683420:CDS |
| CAGCACAACGAGCAGCGGAG+TGG | 0.585977 | 4_4:+45889810 | Msa0683420:CDS |
| GAGAAGATGTTACGTCCCAA+TGG | 0.590333 | 4_4:+45891559 | Msa0683420:CDS |
| CTCAGGTGGTGGTTCAAGGA+GGG | 0.590446 | 4_4:+45889892 | Msa0683420:CDS |
| GAAACAGAAAGTGAAAGTGA+TGG | 0.591683 | 4_4:+45889532 | Msa0683420:CDS |
| CCAGGTTCGTTGGAAACTGG+TGG | 0.592551 | 4_4:-45889779 | None:intergenic |
| GGATGAAGTCGGTTTATGCA+GGG | 0.595204 | 4_4:+45891212 | Msa0683420:intron |
| GTTGGTACTTTGATGAAGGG+AGG | 0.602985 | 4_4:-45892461 | None:intergenic |
| GAGGTTAGCAAGCATACTGA+GGG | 0.605728 | 4_4:+45891529 | Msa0683420:CDS |
| GTGGCAGTTAGAAGCTCAGG+TGG | 0.606293 | 4_4:+45889878 | Msa0683420:CDS |
| TTGTTGTTGTCAGATGAAGA+AGG | 0.609510 | 4_4:-45889599 | None:intergenic |
| GGTTCGTTGGAAACTGGTGG+AGG | 0.610700 | 4_4:-45889776 | None:intergenic |
| GTATATATGTAGAATGCAAG+TGG | 0.614178 | 4_4:+45891507 | Msa0683420:intron |
| CAAGCATACTGAGGGGACCA+AGG | 0.617268 | 4_4:+45891537 | Msa0683420:CDS |
| GTTGGAAACTGGTGGAGGTG+TGG | 0.617803 | 4_4:-45889771 | None:intergenic |
| GTACTTTGATGAAGGGAGGA+CGG | 0.620131 | 4_4:-45892457 | None:intergenic |
| AGGAATACCGAGAGTTTCGG+AGG | 0.621367 | 4_4:+45889973 | Msa0683420:CDS |
| TGAGAGTTCTGATGACGGAA+GGG | 0.624959 | 4_4:+45889943 | Msa0683420:CDS |
| TGGTATATGAGGAAATTGGG+AGG | 0.626318 | 4_4:-45894541 | None:intergenic |
| TCGGAGACGGGGAAGCCACA+AGG | 0.628393 | 4_4:+45889854 | Msa0683420:CDS |
| TCCGGTGAGAGTTCTGATGA+CGG | 0.630258 | 4_4:+45889938 | Msa0683420:CDS |
| TGATGGGAGCAATAGTGAGA+AGG | 0.633742 | 4_4:-45891346 | None:intergenic |
| TGAAAACTGATTCGGAGACG+GGG | 0.642276 | 4_4:+45889843 | Msa0683420:CDS |
| GGAGGTTAGCAAGCATACTG+AGG | 0.649255 | 4_4:+45891528 | Msa0683420:CDS |
| TATAGCTCGTCAGAAAGAGA+AGG | 0.650049 | 4_4:+45892364 | Msa0683420:intron |
| ACTCATCAATGAGAAAGGCA+AGG | 0.654277 | 4_4:+45894587 | Msa0683420:CDS |
| GCTCAGGTGGTGGTTCAAGG+AGG | 0.655949 | 4_4:+45889891 | Msa0683420:CDS |
| TGACACAGATCCGAATGATG+TGG | 0.658916 | 4_4:+45891238 | Msa0683420:CDS |
| GCAGCTGGAACAACTTACTG+TGG | 0.659004 | 4_4:+45891281 | Msa0683420:CDS |
| GAGTTGATGGAGTCACGCGT+CGG | 0.667368 | 4_4:-45889704 | None:intergenic |
| AGGCAGTAAGCAGAAGACCA+AGG | 0.667531 | 4_4:+45892414 | Msa0683420:CDS |
| GATTGGTTGTGTTTGCACAA+AGG | 0.672937 | 4_4:-45894517 | None:intergenic |
| GACGGGGTATACTTCCAAAG+AGG | 0.681214 | 4_4:+45890099 | Msa0683420:CDS |
| GTTGGAATGGCATATATTCG+GGG | 0.681666 | 4_4:-45889298 | None:intergenic |
| TATATGTAGAATGCAAGTGG+AGG | 0.687748 | 4_4:+45891510 | Msa0683420:intron |
| AGGTTAGCAAGCATACTGAG+GGG | 0.783279 | 4_4:+45891530 | Msa0683420:CDS |
| CCATTTACAAGAGACCATCG+AGG | 0.813188 | 4_4:+45889557 | Msa0683420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTAAAAATTTAAAAAAA+AGG | + | chr4_4:45891862-45891881 | Msa0683420:intron | 0.0% |
| !!! | AAAAAATAATTTTTTTTTAT+TGG | + | chr4_4:45891985-45892004 | Msa0683420:intron | 0.0% |
| !!! | AAAAATAATTTTTTTTTATT+GGG | + | chr4_4:45891986-45892005 | Msa0683420:intron | 0.0% |
| !! | TATAATATTTAAAAAATATT+GGG | - | chr4_4:45892832-45892851 | None:intergenic | 0.0% |
| !! | ATATAATATTTAAAAAATAT+TGG | - | chr4_4:45892833-45892852 | None:intergenic | 0.0% |
| !!! | CATATTTTTCATTAAAAAAA+AGG | + | chr4_4:45891814-45891833 | Msa0683420:intron | 10.0% |
| !! | AAAAATTTAAAAAAAAGGTT+AGG | + | chr4_4:45891867-45891886 | Msa0683420:intron | 10.0% |
| !!! | TTTTTTAATTTACAAAAATC+AGG | - | chr4_4:45891936-45891955 | None:intergenic | 10.0% |
| !! | TGTAAATTAAAAAATCTTAT+TGG | + | chr4_4:45891942-45891961 | Msa0683420:intron | 10.0% |
| !! | GTAAATTAAAAAATCTTATT+GGG | + | chr4_4:45891943-45891962 | Msa0683420:intron | 10.0% |
| !!! | ATTTTGGTAAAAAAAAAAAA+AGG | - | chr4_4:45892138-45892157 | None:intergenic | 10.0% |
| !!! | NCATTAAATATGATTTTTTA+AGG | + | chr4_4:45892756-45892775 | Msa0683420:intron | 10.0% |
| !!! | CATTAAATATGATTTTTTAA+GGG | + | chr4_4:45892757-45892776 | Msa0683420:intron | 10.0% |
| !!! | AGACAAATAATTTTTTTTTT+TGG | - | chr4_4:45893130-45893149 | None:intergenic | 10.0% |
| !! | TATAATTATTACATATTCAT+TGG | + | chr4_4:45893188-45893207 | Msa0683420:intron | 10.0% |
| !! | TTTAATAAATACAAATAATG+TGG | - | chr4_4:45893255-45893274 | None:intergenic | 10.0% |
| !! | TTATTTGTATTTATTAAAGT+TGG | + | chr4_4:45893257-45893276 | Msa0683420:intron | 10.0% |
| !! | TATTTGTATTTATTAAAGTT+GGG | + | chr4_4:45893258-45893277 | Msa0683420:intron | 10.0% |
| !! | ACATTTATAAATAATTAAGA+CGG | - | chr4_4:45893603-45893622 | None:intergenic | 10.0% |
| !! | TGATATATAGTTAAACAATT+TGG | + | chr4_4:45889408-45889427 | Msa0683420:five_prime_UTR | 15.0% |
| !! | TGAAAACATAAAAACTTAAT+AGG | + | chr4_4:45890474-45890493 | Msa0683420:intron | 15.0% |
| !!! | ATTTTACATTCTACTTTAAA+AGG | + | chr4_4:45890792-45890811 | Msa0683420:intron | 15.0% |
| !!! | TTATTTCTTCTTTTTTCTTT+GGG | - | chr4_4:45890898-45890917 | None:intergenic | 15.0% |
| !!! | TTTATTTCTTCTTTTTTCTT+TGG | - | chr4_4:45890899-45890918 | None:intergenic | 15.0% |
| !! | AAGAAAAAAGAAGAAATAAA+CGG | + | chr4_4:45890899-45890918 | Msa0683420:intron | 15.0% |
| !!! | ACATATTTTTGGTAAATTAA+AGG | - | chr4_4:45891146-45891165 | None:intergenic | 15.0% |
| !!! | TAGAAAACAATACATATTTT+TGG | - | chr4_4:45891157-45891176 | None:intergenic | 15.0% |
| !! | AAAAATAACTAATCTTTGTA+GGG | - | chr4_4:45892045-45892064 | None:intergenic | 15.0% |
| !! | AAAAAATAACTAATCTTTGT+AGG | - | chr4_4:45892046-45892065 | None:intergenic | 15.0% |
| !!! | AAAACTACTAATCTTTATTT+TGG | - | chr4_4:45892154-45892173 | None:intergenic | 15.0% |
| !!! | AGACATTTAATTTGTTATAA+TGG | - | chr4_4:45892201-45892220 | None:intergenic | 15.0% |
| !! | ATTTATTCAATCTAATCTAA+TGG | + | chr4_4:45892231-45892250 | Msa0683420:intron | 15.0% |
| !!! | AAACTTTTGACTTATATAAA+AGG | - | chr4_4:45892946-45892965 | None:intergenic | 15.0% |
| !! | TATAAAATCAGATCACATTA+TGG | + | chr4_4:45890534-45890553 | Msa0683420:intron | 20.0% |
| !! | ATAAAATCAGATCACATTAT+GGG | + | chr4_4:45890535-45890554 | Msa0683420:intron | 20.0% |
| !!! | AGTAGAGATTTATTTTTTGA+AGG | + | chr4_4:45890672-45890691 | Msa0683420:intron | 20.0% |
| !!! | TATTCTATTAGTTCTTGTTT+TGG | - | chr4_4:45890860-45890879 | None:intergenic | 20.0% |
| !! | AAGTATTCATATGACTTAAT+AGG | + | chr4_4:45891020-45891039 | Msa0683420:intron | 20.0% |
| !! | AATCACTCAAAATCTAAAAA+AGG | - | chr4_4:45891058-45891077 | None:intergenic | 20.0% |
| !! | CAAACTAGTAATATGAATTA+CGG | + | chr4_4:45891178-45891197 | Msa0683420:intron | 20.0% |
| !! | AAACTAGTAATATGAATTAC+GGG | + | chr4_4:45891179-45891198 | Msa0683420:intron | 20.0% |
| !! | TTACTAAATTACAAGAAAGA+TGG | + | chr4_4:45891308-45891327 | Msa0683420:CDS | 20.0% |
| !! | TACTAAATTACAAGAAAGAT+GGG | + | chr4_4:45891309-45891328 | Msa0683420:CDS | 20.0% |
| !! | TGTTTGACAAAACTTAAAAA+TGG | + | chr4_4:45892066-45892085 | Msa0683420:intron | 20.0% |
| !!! | AGATTAGTAGTTTTAAGTAA+TGG | + | chr4_4:45892160-45892179 | Msa0683420:intron | 20.0% |
| !!! | TGCATATACTTCAATTTTTA+TGG | - | chr4_4:45892306-45892325 | None:intergenic | 20.0% |
| !! | TAAAGAATCAAGAGAATTAA+AGG | - | chr4_4:45893341-45893360 | None:intergenic | 20.0% |
| !!! | AATTATAAGTGGTTTTCAAA+TGG | - | chr4_4:45893729-45893748 | None:intergenic | 20.0% |
| !! | ATTTGAAAACCACTTATAAT+TGG | + | chr4_4:45893728-45893747 | Msa0683420:intron | 20.0% |
| !! | ATGTACGTGCATATATTTTT+GGG | - | chr4_4:45889371-45889390 | None:intergenic | 25.0% |
| !! | TATGTACGTGCATATATTTT+TGG | - | chr4_4:45889372-45889391 | None:intergenic | 25.0% |
| !!! | TGCTGGTTTTTTTAATATGA+CGG | + | chr4_4:45890081-45890100 | Msa0683420:CDS | 25.0% |
| !!! | TAAACAACAACGTTGTTTTA+TGG | + | chr4_4:45890179-45890198 | Msa0683420:intron | 25.0% |
| !! | CTTTGATATCTGAATTTTTG+AGG | + | chr4_4:45890213-45890232 | Msa0683420:intron | 25.0% |
| !! | CTTTTATATCATGTCATGAA+TGG | + | chr4_4:45890598-45890617 | Msa0683420:intron | 25.0% |
| ! | ATTGAACAATTGTGACAAAA+AGG | + | chr4_4:45890636-45890655 | Msa0683420:intron | 25.0% |
| ! | AATGTCACAATATTAATTCG+AGG | - | chr4_4:45890938-45890957 | None:intergenic | 25.0% |
| ! | AGTGATTCCAAGTATTTAAA+TGG | + | chr4_4:45891071-45891090 | Msa0683420:intron | 25.0% |
| ! | TGTAATAATGTGATTATGCA+TGG | + | chr4_4:45891485-45891504 | Msa0683420:intron | 25.0% |
| !!! | AAAAGAGTTTGATTTGTATG+TGG | - | chr4_4:45891784-45891803 | None:intergenic | 25.0% |
| ! | TTTCTAATAGTTAACAGTGA+AGG | + | chr4_4:45892271-45892290 | Msa0683420:intron | 25.0% |
| ! | TATATGTGAAAGTAACCTAT+CGG | + | chr4_4:45892974-45892993 | Msa0683420:intron | 25.0% |
| ! | TACATATTCATTGGTGAATT+AGG | + | chr4_4:45893197-45893216 | Msa0683420:intron | 25.0% |
| ! | TGATATGAGTATTAGAAACA+AGG | + | chr4_4:45893296-45893315 | Msa0683420:intron | 25.0% |
| ! | TCATTCTTAACAAATTGTTG+TGG | - | chr4_4:45893404-45893423 | None:intergenic | 25.0% |
| ! | NNNCACTTTCCAATTATAAG+TGG | - | chr4_4:45893740-45893759 | None:intergenic | 25.0% |
| !! | CAATAAAAGCTTCAAGATTT+TGG | - | chr4_4:45894230-45894249 | None:intergenic | 25.0% |
| !! | CAAAATCTTGAAGCTTTTAT+TGG | + | chr4_4:45894228-45894247 | Msa0683420:intron | 25.0% |
| !! | TTTTGGTATATGAGGAAATT+GGG | - | chr4_4:45894547-45894566 | None:intergenic | 25.0% |
| TTGTTGGAATGGCATATATT+CGG | - | chr4_4:45889303-45889322 | None:intergenic | 30.0% | |
| !!! | ATATATTTTTGGGGGGAATA+GGG | - | chr4_4:45889361-45889380 | None:intergenic | 30.0% |
| !! | TGTACGTGCATATATTTTTG+GGG | - | chr4_4:45889370-45889389 | None:intergenic | 30.0% |
| ! | GAATTGATTGGATTAGGATT+TGG | - | chr4_4:45889635-45889654 | None:intergenic | 30.0% |
| ! | GTTAGTGTTGAAAACTGATT+CGG | + | chr4_4:45889835-45889854 | Msa0683420:CDS | 30.0% |
| !!! | GCTGGTTTTTTTAATATGAC+GGG | + | chr4_4:45890082-45890101 | Msa0683420:CDS | 30.0% |
| !!! | CTGGTTTTTTTAATATGACG+GGG | + | chr4_4:45890083-45890102 | Msa0683420:CDS | 30.0% |
| TATACTTCCAAAGAGGTTAT+AGG | + | chr4_4:45890106-45890125 | Msa0683420:CDS | 30.0% | |
| TTGTAACATATAGTCAAGTG+TGG | - | chr4_4:45890281-45890300 | None:intergenic | 30.0% | |
| TCTTAAACACACTCTTTCAT+AGG | - | chr4_4:45890363-45890382 | None:intergenic | 30.0% | |
| TATATCATGTCATGAATGGA+TGG | + | chr4_4:45890602-45890621 | Msa0683420:intron | 30.0% | |
| CTAAGGTCCATTTAAATACT+TGG | - | chr4_4:45891081-45891100 | None:intergenic | 30.0% | |
| AAATGGACCTTAGTATATTG+AGG | + | chr4_4:45891088-45891107 | Msa0683420:intron | 30.0% | |
| AATGGACCTTAGTATATTGA+GGG | + | chr4_4:45891089-45891108 | Msa0683420:intron | 30.0% | |
| GTATATATGTAGAATGCAAG+TGG | + | chr4_4:45891507-45891526 | Msa0683420:intron | 30.0% | |
| ATCATATCGAATCAAGGATT+CGG | - | chr4_4:45891590-45891609 | None:intergenic | 30.0% | |
| AAACTCATCAGTAAATGAGT+TGG | + | chr4_4:45892388-45892407 | Msa0683420:CDS | 30.0% | |
| TTTGTTGGTACTTTGATGAA+GGG | - | chr4_4:45892467-45892486 | None:intergenic | 30.0% | |
| ! | TTTTGTTGGTACTTTGATGA+AGG | - | chr4_4:45892468-45892487 | None:intergenic | 30.0% |
| !!! | TTACCACATACTGTTTTTGT+TGG | - | chr4_4:45892482-45892501 | None:intergenic | 30.0% |
| ! | TTTTCTTCTCCTTGATGAAT+TGG | - | chr4_4:45892543-45892562 | None:intergenic | 30.0% |
| TTGACAAATTAAATGCCGAT+AGG | - | chr4_4:45892992-45893011 | None:intergenic | 30.0% | |
| !! | GTATTTGTTTTCAACCAACT+TGG | + | chr4_4:45893042-45893061 | Msa0683420:intron | 30.0% |
| TTATCATTCTTACTCCAAGT+TGG | - | chr4_4:45893059-45893078 | None:intergenic | 30.0% | |
| CATTGGTGAATTAGGAATAT+AGG | + | chr4_4:45893205-45893224 | Msa0683420:intron | 30.0% | |
| TAAAGTTGGGACTATTAGTA+AGG | + | chr4_4:45893271-45893290 | Msa0683420:intron | 30.0% | |
| TATTTCCTTGACAACACATA+TGG | - | chr4_4:45893571-45893590 | None:intergenic | 30.0% | |
| CAAGCTTAAAGGCAAATAAT+AGG | - | chr4_4:45893627-45893646 | None:intergenic | 30.0% | |
| GAAAAACACTACAAGCTTAA+AGG | - | chr4_4:45893638-45893657 | None:intergenic | 30.0% | |
| ATCTTCTGCATAAAACATTC+AGG | - | chr4_4:45893920-45893939 | None:intergenic | 30.0% | |
| ! | ATAAGCTTCTTCCTTTGAAA+TGG | - | chr4_4:45893966-45893985 | None:intergenic | 30.0% |
| ! | AAACCTCTATTTTCTGATGA+AGG | + | chr4_4:45893987-45894006 | Msa0683420:intron | 30.0% |
| !! | CTTGAAGCTTTTATTGGTTA+AGG | + | chr4_4:45894234-45894253 | Msa0683420:intron | 30.0% |
| AAATCTCAAATAGCAGAATC+TGG | + | chr4_4:45894323-45894342 | Msa0683420:intron | 30.0% | |
| AATCTCAAATAGCAGAATCT+GGG | + | chr4_4:45894324-45894343 | Msa0683420:intron | 30.0% | |
| !! | GTTTTGGTATATGAGGAAAT+TGG | - | chr4_4:45894548-45894567 | None:intergenic | 30.0% |
| !!! | CTGATTTGTTTTGGTATATG+AGG | - | chr4_4:45894555-45894574 | None:intergenic | 30.0% |
| !!! | TCAATGCAACTGATTTGTTT+TGG | - | chr4_4:45894564-45894583 | None:intergenic | 30.0% |
| GATAGTGTTAGTTGTTGGAA+TGG | - | chr4_4:45889314-45889333 | None:intergenic | 35.0% | |
| AGTGAGATAGTGTTAGTTGT+TGG | - | chr4_4:45889319-45889338 | None:intergenic | 35.0% | |
| !!! | CATATATTTTTGGGGGGAAT+AGG | - | chr4_4:45889362-45889381 | None:intergenic | 35.0% |
| !!! | TACGTGCATATATTTTTGGG+GGG | - | chr4_4:45889368-45889387 | None:intergenic | 35.0% |
| !!! | GTACGTGCATATATTTTTGG+GGG | - | chr4_4:45889369-45889388 | None:intergenic | 35.0% |
| GAAACAGAAAGTGAAAGTGA+TGG | + | chr4_4:45889532-45889551 | Msa0683420:CDS | 35.0% | |
| ! | TTGTTGTTGTCAGATGAAGA+AGG | - | chr4_4:45889602-45889621 | None:intergenic | 35.0% |
| ATCCTAATCCAATCAATTCC+TGG | + | chr4_4:45889636-45889655 | Msa0683420:CDS | 35.0% | |
| TTCCAGGAATTGATTGGATT+AGG | - | chr4_4:45889641-45889660 | None:intergenic | 35.0% | |
| AACAATTCGATGAGAAGTTC+CGG | + | chr4_4:45889920-45889939 | Msa0683420:CDS | 35.0% | |
| ! | TGTTTCTGATGCTACTAAAC+CGG | + | chr4_4:45890036-45890055 | Msa0683420:CDS | 35.0% |
| GTTTCTTCCTATAACCTCTT+TGG | - | chr4_4:45890116-45890135 | None:intergenic | 35.0% | |
| AAGAGGTTATAGGAAGAAAC+TGG | + | chr4_4:45890116-45890135 | Msa0683420:CDS | 35.0% | |
| !!! | CTTTTTTCTTTGGGTCAAGA+CGG | - | chr4_4:45890889-45890908 | None:intergenic | 35.0% |
| ATGGACCTTAGTATATTGAG+GGG | + | chr4_4:45891090-45891109 | Msa0683420:intron | 35.0% | |
| CTAATCCCCTCAATATACTA+AGG | - | chr4_4:45891098-45891117 | None:intergenic | 35.0% | |
| AGTAATATGAATTACGGGTC+CGG | + | chr4_4:45891184-45891203 | Msa0683420:intron | 35.0% | |
| CTTATCTTTGCCACATCATT+CGG | - | chr4_4:45891251-45891270 | None:intergenic | 35.0% | |
| ATAGTGAGAAGGTTCCAAAA+AGG | - | chr4_4:45891338-45891357 | None:intergenic | 35.0% | |
| GGCAAAATCCTCAAACTTAT+CGG | + | chr4_4:45891380-45891399 | Msa0683420:CDS | 35.0% | |
| GCAAAATCCTCAAACTTATC+GGG | + | chr4_4:45891381-45891400 | Msa0683420:CDS | 35.0% | |
| TATATGTAGAATGCAAGTGG+AGG | + | chr4_4:45891510-45891529 | Msa0683420:intron | 35.0% | |
| TCATATCGAATCAAGGATTC+GGG | - | chr4_4:45891589-45891608 | None:intergenic | 35.0% | |
| ! | GAATCCTTGATTCGATATGA+TGG | + | chr4_4:45891589-45891608 | Msa0683420:CDS | 35.0% |
| CATACCATCATATCGAATCA+AGG | - | chr4_4:45891596-45891615 | None:intergenic | 35.0% | |
| GACTATTGTCACTCTAAGTT+TGG | - | chr4_4:45892096-45892115 | None:intergenic | 35.0% | |
| !! | ATCAGTAAATGAGTTGGTAG+AGG | + | chr4_4:45892394-45892413 | Msa0683420:CDS | 35.0% |
| GTACCAACAAAAACAGTATG+TGG | + | chr4_4:45892476-45892495 | Msa0683420:intron | 35.0% | |
| AAACACCATCCAATTCATCA+AGG | + | chr4_4:45892531-45892550 | Msa0683420:intron | 35.0% | |
| TTTAGACGCAAATCACATTC+TGG | + | chr4_4:45892584-45892603 | Msa0683420:intron | 35.0% | |
| GAGTATTAGAAACAAGGACT+AGG | + | chr4_4:45893302-45893321 | Msa0683420:intron | 35.0% | |
| TTTACCAGATGGAAGGATAT+TGG | - | chr4_4:45893381-45893400 | None:intergenic | 35.0% | |
| AATTGTTGTGGTTTACCAGA+TGG | - | chr4_4:45893392-45893411 | None:intergenic | 35.0% | |
| ATTGAAATCGCATAGTACCA+GGG | - | chr4_4:45893547-45893566 | None:intergenic | 35.0% | |
| AATTGAAATCGCATAGTACC+AGG | - | chr4_4:45893548-45893567 | None:intergenic | 35.0% | |
| CAATTCCATATGTGTTGTCA+AGG | + | chr4_4:45893563-45893582 | Msa0683420:intron | 35.0% | |
| ! | TCTGATTTGCACAAAACTGT+TGG | - | chr4_4:45893868-45893887 | None:intergenic | 35.0% |
| !! | GATAGGTTATGTTTTGCTGT+AGG | - | chr4_4:45893893-45893912 | None:intergenic | 35.0% |
| !! | TAAAACATTCAGGTTGCGAT+AGG | - | chr4_4:45893910-45893929 | None:intergenic | 35.0% |
| GTATCTACCATCCATTTCAA+AGG | + | chr4_4:45893952-45893971 | Msa0683420:intron | 35.0% | |
| ! | TCTTCTTCAGCTTTTCTTCT+GGG | - | chr4_4:45894018-45894037 | None:intergenic | 35.0% |
| ! | TTCTTCTTCAGCTTTTCTTC+TGG | - | chr4_4:45894019-45894038 | None:intergenic | 35.0% |
| ! | AAAGAAGCATGAAGAAGAGA+AGG | + | chr4_4:45894068-45894087 | Msa0683420:intron | 35.0% |
| ! | AAGAAGCATGAAGAAGAGAA+GGG | + | chr4_4:45894069-45894088 | Msa0683420:intron | 35.0% |
| AGAATCTGAACAAGATTCTG+AGG | + | chr4_4:45894100-45894119 | Msa0683420:intron | 35.0% | |
| ! | ATTTTGGACAAAAGAGTCAG+GGG | - | chr4_4:45894214-45894233 | None:intergenic | 35.0% |
| ! | GATTTTGGACAAAAGAGTCA+GGG | - | chr4_4:45894215-45894234 | None:intergenic | 35.0% |
| ! | AGATTTTGGACAAAAGAGTC+AGG | - | chr4_4:45894216-45894235 | None:intergenic | 35.0% |
| ACAATGTGTTCAGTAGTGAT+TGG | - | chr4_4:45894375-45894394 | None:intergenic | 35.0% | |
| CACAAAGGTTATTGGTATTG+TGG | - | chr4_4:45894505-45894524 | None:intergenic | 35.0% | |
| TGTGTTTGCACAAAGGTTAT+TGG | - | chr4_4:45894513-45894532 | None:intergenic | 35.0% | |
| GATACACTCATCAATGAGAA+AGG | + | chr4_4:45894582-45894601 | Msa0683420:CDS | 35.0% | |
| CAAGTGTTCCAGGAATTGAT+TGG | - | chr4_4:45889647-45889666 | None:intergenic | 40.0% | |
| CAATCAATTCCTGGAACACT+TGG | + | chr4_4:45889645-45889664 | Msa0683420:CDS | 40.0% | |
| !! | GTTGAAAACTGATTCGGAGA+CGG | + | chr4_4:45889841-45889860 | Msa0683420:CDS | 40.0% |
| !! | TTGAAAACTGATTCGGAGAC+GGG | + | chr4_4:45889842-45889861 | Msa0683420:CDS | 40.0% |
| TAGAGGAATACCGAGAGTTT+CGG | + | chr4_4:45889970-45889989 | Msa0683420:CDS | 40.0% | |
| TCATGTCATGAATGGATGGA+TGG | + | chr4_4:45890606-45890625 | Msa0683420:intron | 40.0% | |
| GTCACAATTGTTCAATGCCA+CGG | - | chr4_4:45890632-45890651 | None:intergenic | 40.0% | |
| GTAATATGAATTACGGGTCC+GGG | + | chr4_4:45891185-45891204 | Msa0683420:intron | 40.0% | |
| ATAAGAGAATCACTAGCAGC+TGG | + | chr4_4:45891266-45891285 | Msa0683420:CDS | 40.0% | |
| ! | AGAAAGATGGGACACCTTTT+TGG | + | chr4_4:45891321-45891340 | Msa0683420:CDS | 40.0% |
| AAATCCTCAAACTTATCGGG+TGG | + | chr4_4:45891384-45891403 | Msa0683420:intron | 40.0% | |
| AATCCTCAAACTTATCGGGT+GGG | + | chr4_4:45891385-45891404 | Msa0683420:intron | 40.0% | |
| AATCTTTGTAGGGCATATGC+AGG | - | chr4_4:45892035-45892054 | None:intergenic | 40.0% | |
| TATAGCTCGTCAGAAAGAGA+AGG | + | chr4_4:45892364-45892383 | Msa0683420:intron | 40.0% | |
| CTTCTCCTTGATGAATTGGA+TGG | - | chr4_4:45892539-45892558 | None:intergenic | 40.0% | |
| ! | AAACGAAGGCAAAGTACTCT+CGG | - | chr4_4:45892567-45892586 | None:intergenic | 40.0% |
| ! | TGTGATTTGCGTCTAAACGA+AGG | - | chr4_4:45892581-45892600 | None:intergenic | 40.0% |
| TTGACCAATATCCTTCCATC+TGG | + | chr4_4:45893374-45893393 | Msa0683420:intron | 40.0% | |
| ! | ACACATTCACTAGCTCTTCA+TGG | - | chr4_4:45893491-45893510 | None:intergenic | 40.0% |
| AATCATCGCTTATTGAGGCA+AGG | - | chr4_4:45893522-45893541 | None:intergenic | 40.0% | |
| !! | GCTTCTTCCTTTGAAATGGA+TGG | - | chr4_4:45893962-45893981 | None:intergenic | 40.0% |
| GAGCCTTCATCAGAAAATAG+AGG | - | chr4_4:45893993-45894012 | None:intergenic | 40.0% | |
| ! | AGAAGCATGAAGAAGAGAAG+GGG | + | chr4_4:45894070-45894089 | Msa0683420:intron | 40.0% |
| !! | TGAAGACAGCTCTAAGAAGA+AGG | + | chr4_4:45894161-45894180 | Msa0683420:intron | 40.0% |
| CAAGTTGCTTGTGAAATCCA+AGG | + | chr4_4:45894186-45894205 | Msa0683420:intron | 40.0% | |
| TCAAATAGCAGAATCTGGGA+TGG | + | chr4_4:45894328-45894347 | Msa0683420:intron | 40.0% | |
| ACCAATTTGAGTACACACTC+TGG | + | chr4_4:45894436-45894455 | Msa0683420:intron | 40.0% | |
| ACCAGAGTGTGTACTCAAAT+TGG | - | chr4_4:45894440-45894459 | None:intergenic | 40.0% | |
| GGAAGTGGTAAGATCATGAA+TGG | - | chr4_4:45894484-45894503 | None:intergenic | 40.0% | |
| GGTTATTGGTATTGTGGAAG+TGG | - | chr4_4:45894499-45894518 | None:intergenic | 40.0% | |
| ! | GATTGGTTGTGTTTGCACAA+AGG | - | chr4_4:45894520-45894539 | None:intergenic | 40.0% |
| TGGTATATGAGGAAATTGGG+AGG | - | chr4_4:45894544-45894563 | None:intergenic | 40.0% | |
| ACTCATCAATGAGAAAGGCA+AGG | + | chr4_4:45894587-45894606 | Msa0683420:CDS | 40.0% | |
| CCTCGATGGTCTCTTGTAAA+TGG | - | chr4_4:45889560-45889579 | None:intergenic | 45.0% | |
| CCATTTACAAGAGACCATCG+AGG | + | chr4_4:45889557-45889576 | Msa0683420:CDS | 45.0% | |
| CATCAACTCTGATGAAGTCC+CGG | + | chr4_4:45889718-45889737 | Msa0683420:CDS | 45.0% | |
| !! | TGAAAACTGATTCGGAGACG+GGG | + | chr4_4:45889843-45889862 | Msa0683420:CDS | 45.0% |
| !! | TGAGAGTTCTGATGACGGAA+GGG | + | chr4_4:45889943-45889962 | Msa0683420:CDS | 45.0% |
| GGACTTGAGAGATGCACTTT+CGG | + | chr4_4:45889994-45890013 | Msa0683420:CDS | 45.0% | |
| GCATACATGATCGGGTAATC+CGG | - | chr4_4:45890058-45890077 | None:intergenic | 45.0% | |
| CAGCACTAGCATACATGATC+GGG | - | chr4_4:45890066-45890085 | None:intergenic | 45.0% | |
| CCAGCACTAGCATACATGAT+CGG | - | chr4_4:45890067-45890086 | None:intergenic | 45.0% | |
| ! | GGATGAAGTCGGTTTATGCA+GGG | + | chr4_4:45891212-45891231 | Msa0683420:intron | 45.0% |
| TGACACAGATCCGAATGATG+TGG | + | chr4_4:45891238-45891257 | Msa0683420:CDS | 45.0% | |
| TGATGGGAGCAATAGTGAGA+AGG | - | chr4_4:45891349-45891368 | None:intergenic | 45.0% | |
| TCTCACTATTGCTCCCATCA+AGG | + | chr4_4:45891349-45891368 | Msa0683420:CDS | 45.0% | |
| !!! | TTGCCGTTTTCGTCCTTGAT+GGG | - | chr4_4:45891365-45891384 | None:intergenic | 45.0% |
| !!! | TTTGCCGTTTTCGTCCTTGA+TGG | - | chr4_4:45891366-45891385 | None:intergenic | 45.0% |
| ATACCCACCCGATAAGTTTG+AGG | - | chr4_4:45891391-45891410 | None:intergenic | 45.0% | |
| GAGGTTAGCAAGCATACTGA+GGG | + | chr4_4:45891529-45891548 | Msa0683420:CDS | 45.0% | |
| AGGTTAGCAAGCATACTGAG+GGG | + | chr4_4:45891530-45891549 | Msa0683420:CDS | 45.0% | |
| GAGAAGATGTTACGTCCCAA+TGG | + | chr4_4:45891559-45891578 | Msa0683420:CDS | 45.0% | |
| AAGGATTCGGGCAATCCATT+GGG | - | chr4_4:45891577-45891596 | None:intergenic | 45.0% | |
| GTACTTTGATGAAGGGAGGA+CGG | - | chr4_4:45892460-45892479 | None:intergenic | 45.0% | |
| GTTGGTACTTTGATGAAGGG+AGG | - | chr4_4:45892464-45892483 | None:intergenic | 45.0% | |
| AGACGCAAATCACATTCTGG+AGG | + | chr4_4:45892587-45892606 | Msa0683420:intron | 45.0% | |
| GGGTCTTACACAAACTATGC+TGG | - | chr4_4:45892811-45892830 | None:intergenic | 45.0% | |
| GTTGTGGTTTACCAGATGGA+AGG | - | chr4_4:45893388-45893407 | None:intergenic | 45.0% | |
| CGCTTATTGAGGCAAGGAAA+AGG | - | chr4_4:45893516-45893535 | None:intergenic | 45.0% | |
| GGGTCAATCATCGCTTATTG+AGG | - | chr4_4:45893527-45893546 | None:intergenic | 45.0% | |
| CAATAAGCGATGATTGACCC+TGG | + | chr4_4:45893527-45893546 | Msa0683420:intron | 45.0% | |
| TGCACAACGTGTTCAGTAGT+GGG | - | chr4_4:45894411-45894430 | None:intergenic | 45.0% | |
| TTGCACAACGTGTTCAGTAG+TGG | - | chr4_4:45894412-45894431 | None:intergenic | 45.0% | |
| ACTCTGGTACTCTTTCTGAC+AGG | + | chr4_4:45894452-45894471 | Msa0683420:intron | 45.0% | |
| TGAGGAAATTGGGAGGTGAT+TGG | - | chr4_4:45894537-45894556 | None:intergenic | 45.0% | |
| !!! | ATATTTTTCATTAAAAAAAA+GGG | + | chr4_4:45891815-45891834 | Msa0683420:intron | 5.0% |
| !! | ATAATATTTAAAAAATATTG+GGG | - | chr4_4:45892831-45892850 | None:intergenic | 5.0% |
| AGACTTCAAGTGAGCCTCGA+TGG | - | chr4_4:45889574-45889593 | None:intergenic | 50.0% | |
| !! | GCTTGTTGTCCAAGTGTTCC+AGG | - | chr4_4:45889657-45889676 | None:intergenic | 50.0% |
| CGGTTGTTGTGGAGTTTCGT+TGG | - | chr4_4:45889687-45889706 | None:intergenic | 50.0% | |
| CGGGACTTCATCAGAGTTGA+TGG | - | chr4_4:45889720-45889739 | None:intergenic | 50.0% | |
| TTTGAGTGCCATCCAGGAAG+TGG | - | chr4_4:45889747-45889766 | None:intergenic | 50.0% | |
| GGTTTCTTTGAGTGCCATCC+AGG | - | chr4_4:45889753-45889772 | None:intergenic | 50.0% | |
| CTTCTAACTGCCACTCCTTG+TGG | - | chr4_4:45889872-45889891 | None:intergenic | 50.0% | |
| ! | TCCGGTGAGAGTTCTGATGA+CGG | + | chr4_4:45889938-45889957 | Msa0683420:CDS | 50.0% |
| TCCGTCATCAGAACTCTCAC+CGG | - | chr4_4:45889942-45889961 | None:intergenic | 50.0% | |
| !! | GTGAGAGTTCTGATGACGGA+AGG | + | chr4_4:45889942-45889961 | Msa0683420:CDS | 50.0% |
| !! | GATGACGGAAGGGAGTTTAG+AGG | + | chr4_4:45889953-45889972 | Msa0683420:CDS | 50.0% |
| AGGAATACCGAGAGTTTCGG+AGG | + | chr4_4:45889973-45889992 | Msa0683420:CDS | 50.0% | |
| CTCAAGTCCTCCGAAACTCT+CGG | - | chr4_4:45889983-45890002 | None:intergenic | 50.0% | |
| CCGATCATGTATGCTAGTGC+TGG | + | chr4_4:45890064-45890083 | Msa0683420:CDS | 50.0% | |
| GACGGGGTATACTTCCAAAG+AGG | + | chr4_4:45890099-45890118 | Msa0683420:CDS | 50.0% | |
| ATATGAATTACGGGTCCGGG+TGG | + | chr4_4:45891188-45891207 | Msa0683420:intron | 50.0% | |
| TATGAATTACGGGTCCGGGT+GGG | + | chr4_4:45891189-45891208 | Msa0683420:intron | 50.0% | |
| ! | GGGATGAAGTCGGTTTATGC+AGG | + | chr4_4:45891211-45891230 | Msa0683420:intron | 50.0% |
| GCAGCTGGAACAACTTACTG+TGG | + | chr4_4:45891281-45891300 | Msa0683420:CDS | 50.0% | |
| GCTCCCATCAAGGACGAAAA+CGG | + | chr4_4:45891359-45891378 | Msa0683420:CDS | 50.0% | |
| GGAGGTTAGCAAGCATACTG+AGG | + | chr4_4:45891528-45891547 | Msa0683420:CDS | 50.0% | |
| GGGACGTAACATCTTCTCCT+TGG | - | chr4_4:45891557-45891576 | None:intergenic | 50.0% | |
| CAAGGATTCGGGCAATCCAT+TGG | - | chr4_4:45891578-45891597 | None:intergenic | 50.0% | |
| AGGCAGTAAGCAGAAGACCA+AGG | + | chr4_4:45892414-45892433 | Msa0683420:CDS | 50.0% | |
| ! | GCTGATTCACTGAGTGACCT+TGG | - | chr4_4:45892434-45892453 | None:intergenic | 50.0% |
| ! | CGCAAATCACATTCTGGAGG+AGG | + | chr4_4:45892590-45892609 | Msa0683420:intron | 50.0% |
| ! | CAGACTTTTGCTCTCGCTGT+CGG | - | chr4_4:45893702-45893721 | None:intergenic | 50.0% |
| GACAGCGAGAGCAAAAGTCT+GGG | + | chr4_4:45893701-45893720 | Msa0683420:intron | 50.0% | |
| CAAAAGAGTCAGGGGTTCCT+TGG | - | chr4_4:45894206-45894225 | None:intergenic | 50.0% | |
| ! | CAACGTGTTCAGTAGTGGGA+GGG | - | chr4_4:45894407-45894426 | None:intergenic | 50.0% |
| ! | ACAACGTGTTCAGTAGTGGG+AGG | - | chr4_4:45894408-45894427 | None:intergenic | 50.0% |
| !! | GAGTTGATGGAGTCACGCGT+CGG | - | chr4_4:45889707-45889726 | None:intergenic | 55.0% |
| GTTGGAAACTGGTGGAGGTG+TGG | - | chr4_4:45889774-45889793 | None:intergenic | 55.0% | |
| GGTTCGTTGGAAACTGGTGG+AGG | - | chr4_4:45889779-45889798 | None:intergenic | 55.0% | |
| CCAGGTTCGTTGGAAACTGG+TGG | - | chr4_4:45889782-45889801 | None:intergenic | 55.0% | |
| CCACCAGTTTCCAACGAACC+TGG | + | chr4_4:45889779-45889798 | Msa0683420:CDS | 55.0% | |
| GAGCCAGGTTCGTTGGAAAC+TGG | - | chr4_4:45889785-45889804 | None:intergenic | 55.0% | |
| GGAGTGGCAGTTAGAAGCTC+AGG | + | chr4_4:45889875-45889894 | Msa0683420:CDS | 55.0% | |
| GTGGCAGTTAGAAGCTCAGG+TGG | + | chr4_4:45889878-45889897 | Msa0683420:CDS | 55.0% | |
| GCAGTTAGAAGCTCAGGTGG+TGG | + | chr4_4:45889881-45889900 | Msa0683420:CDS | 55.0% | |
| ! | GAAGCTCAGGTGGTGGTTCA+AGG | + | chr4_4:45889888-45889907 | Msa0683420:CDS | 55.0% |
| ! | CTCAGGTGGTGGTTCAAGGA+GGG | + | chr4_4:45889892-45889911 | Msa0683420:CDS | 55.0% |
| CATGAATGGATGGATGGCCG+TGG | + | chr4_4:45890612-45890631 | Msa0683420:intron | 55.0% | |
| ATGAATTACGGGTCCGGGTG+GGG | + | chr4_4:45891190-45891209 | Msa0683420:intron | 55.0% | |
| CAAGCATACTGAGGGGACCA+AGG | + | chr4_4:45891537-45891556 | Msa0683420:CDS | 55.0% | |
| CGACAGCGAGAGCAAAAGTC+TGG | + | chr4_4:45893700-45893719 | Msa0683420:intron | 55.0% | |
| !! | GAGTCACGCGTCGGTTGTTG+TGG | - | chr4_4:45889698-45889717 | None:intergenic | 60.0% |
| AGCACAACGAGCAGCGGAGT+GGG | + | chr4_4:45889811-45889830 | Msa0683420:CDS | 60.0% | |
| ! | GCTCAGGTGGTGGTTCAAGG+AGG | + | chr4_4:45889891-45889910 | Msa0683420:CDS | 60.0% |
| TGAATTACGGGTCCGGGTGG+GGG | + | chr4_4:45891191-45891210 | Msa0683420:intron | 60.0% | |
| ! | AACCGACTTCATCCCCCACC+CGG | - | chr4_4:45891206-45891225 | None:intergenic | 60.0% |
| AAGTCCCGGTCGCCACTTCC+TGG | + | chr4_4:45889732-45889751 | Msa0683420:CDS | 65.0% | |
| CCATCCAGGAAGTGGCGACC+GGG | - | chr4_4:45889739-45889758 | None:intergenic | 65.0% | |
| GCCATCCAGGAAGTGGCGAC+CGG | - | chr4_4:45889740-45889759 | None:intergenic | 65.0% | |
| TGCAGCGGAGCCAGGTTCGT+TGG | - | chr4_4:45889792-45889811 | None:intergenic | 65.0% | |
| CGCTGCTCGTTGTGCTGCAG+CGG | - | chr4_4:45889807-45889826 | None:intergenic | 65.0% | |
| CGCTGCAGCACAACGAGCAG+CGG | + | chr4_4:45889805-45889824 | Msa0683420:CDS | 65.0% | |
| CAGCACAACGAGCAGCGGAG+TGG | + | chr4_4:45889810-45889829 | Msa0683420:CDS | 65.0% | |
| GCACAACGAGCAGCGGAGTG+GGG | + | chr4_4:45889812-45889831 | Msa0683420:CDS | 65.0% | |
| CACAACGAGCAGCGGAGTGG+GGG | + | chr4_4:45889813-45889832 | Msa0683420:CDS | 65.0% | |
| TCGGAGACGGGGAAGCCACA+AGG | + | chr4_4:45889854-45889873 | Msa0683420:CDS | 65.0% | |
| GACGGGGAAGCCACAAGGAG+TGG | + | chr4_4:45889859-45889878 | Msa0683420:CDS | 65.0% | |
| GTCCGGGTGGGGGATGAAGT+CGG | + | chr4_4:45891201-45891220 | Msa0683420:intron | 65.0% | |
| CCCGGTCGCCACTTCCTGGA+TGG | + | chr4_4:45889736-45889755 | Msa0683420:CDS | 70.0% | |
| CGTTGTGCTGCAGCGGAGCC+AGG | - | chr4_4:45889800-45889819 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 45889300 | 45894614 | 45889300 | ID=Msa0683420;Name=Msa0683420 |
| chr4_4 | mRNA | 45889300 | 45894614 | 45889300 | ID=Msa0683420-mRNA-1;Parent=Msa0683420;Name=Msa0683420-mRNA-1;_AED=0.17;_eAED=0.17;_QI=230|0.75|0.6|0.8|1|1|5|0|381 |
| chr4_4 | exon | 45889300 | 45890137 | 45889300 | ID=Msa0683420-mRNA-1:exon:11271;Parent=Msa0683420-mRNA-1 |
| chr4_4 | exon | 45891220 | 45891402 | 45891220 | ID=Msa0683420-mRNA-1:exon:11272;Parent=Msa0683420-mRNA-1 |
| chr4_4 | exon | 45891519 | 45891610 | 45891519 | ID=Msa0683420-mRNA-1:exon:11273;Parent=Msa0683420-mRNA-1 |
| chr4_4 | exon | 45892369 | 45892490 | 45892369 | ID=Msa0683420-mRNA-1:exon:11274;Parent=Msa0683420-mRNA-1 |
| chr4_4 | exon | 45894474 | 45894614 | 45894474 | ID=Msa0683420-mRNA-1:exon:11275;Parent=Msa0683420-mRNA-1 |
| chr4_4 | five_prime_UTR | 45889300 | 45889529 | 45889300 | ID=Msa0683420-mRNA-1:five_prime_utr;Parent=Msa0683420-mRNA-1 |
| chr4_4 | CDS | 45889530 | 45890137 | 45889530 | ID=Msa0683420-mRNA-1:cds;Parent=Msa0683420-mRNA-1 |
| chr4_4 | CDS | 45891220 | 45891402 | 45891220 | ID=Msa0683420-mRNA-1:cds;Parent=Msa0683420-mRNA-1 |
| chr4_4 | CDS | 45891519 | 45891610 | 45891519 | ID=Msa0683420-mRNA-1:cds;Parent=Msa0683420-mRNA-1 |
| chr4_4 | CDS | 45892369 | 45892490 | 45892369 | ID=Msa0683420-mRNA-1:cds;Parent=Msa0683420-mRNA-1 |
| chr4_4 | CDS | 45894474 | 45894614 | 45894474 | ID=Msa0683420-mRNA-1:cds;Parent=Msa0683420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
