AlfalfaGEDB | Msa0684780

M. sativa cultivar zhongmu-4 / Msa0684780

KEGG: K10277
GO: GO:0000086 GO:0000278 GO:0003674 GO:0003682 GO:0003700 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006482 GO:0006807 GO:0006996 GO:0007049 GO:0007623 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008214 GO:0008276 GO:0008757 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010452 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016278 GO:0016279 GO:0016491 GO:0016569 GO:0016570 GO:0016571 GO:0016577 GO:0016705 GO:0016706 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032451 GO:0032452 GO:0034968 GO:0036211 GO:0042054 GO:0042752 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0045893 GO:0045935 GO:0046975 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051213 GO:0051252 GO:0051254 GO:0051276 GO:0051864 GO:0055114 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070544 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:0140110 GO:1901564 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF13621.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0684780	XP_013456231.1	95.724	421	10	1	1	421	1	413	0.0	828

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0684780	sp\|Q8RWR1\|JMJ30_ARATH	68.822	433	109	6	4	419	5	428	0.0	593

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0684780	A0A072UKM1	95.724	421	10	1	1	421	1	413	0.0	828

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TFs/TRs:

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Gene ID	Type	Classification
Msa0684780	TR	Jumonji

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0604010	Msa0684780	0.885026	1.158929e-71	-8.615850e-47
Msa0684780	Msa0724140	-0.830489	2.852924e-55	-8.615850e-47
Msa0684780	Msa0982130	0.815054	1.125182e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0684780	MtrunA17_Chr4g0033081	95.724	421	10	1	1	421	1	413	0.0	828
Msa0684780	MtrunA17_Chr1g0185111	38.065	155	86	6	263	412	138	287	2.95e-21	95.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0684780	AT3G20810.1	70.616	422	109	5	4	419	5	417	0.0	601
Msa0684780	AT3G20810.2	68.822	433	109	6	4	419	5	428	0.0	593
Msa0684780	AT3G20810.3	69.900	402	107	4	4	400	5	397	0.0	573
Msa0684780	AT3G20810.5	67.463	335	95	4	4	333	5	330	3.79e-157	447
Msa0684780	AT3G20810.4	67.879	330	92	4	4	328	5	325	1.51e-155	444
Msa0684780	AT5G19840.1	28.986	276	148	11	176	412	15	281	3.92e-20	93.2
Msa0684780	AT5G19840.2	28.986	276	148	11	176	412	15	281	3.98e-20	93.2
Msa0684780	AT3G45880.2	26.552	290	165	10	166	412	16	300	6.34e-13	70.1
Msa0684780	AT3G45880.1	26.552	290	165	10	166	412	16	300	6.86e-13	70.1

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Find 123 sgRNAs with CRISPR-Local

Find 381 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTATTTATGTGCAGAT+TGG	0.423646	4_4:-48406137	Msa0684780:CDS
AAAGCATGGTTTCTGAGTAG+GGG	0.643076	4_4:+48405184	None:intergenic
AAAGTAATACGACATTAAGA+CGG	0.647553	4_4:+48404461	None:intergenic
AAATTCCATGTCTTGCACCT+TGG	0.493789	4_4:+48404607	None:intergenic
AAGCAGTTCGTGAGATGGCG+TGG	0.524892	4_4:-48409577	Msa0684780:CDS
AATGCTTGGTTTGGTCCAGC+TGG	0.430502	4_4:-48405828	Msa0684780:CDS
AATGGGAGGTGTAAAGATTT+TGG	0.296847	4_4:-48409329	Msa0684780:CDS
AATGGTGTTACTGTTCCAGC+TGG	0.562473	4_4:+48405813	None:intergenic
AATGTCGCCGGCGGCGGCGA+GGG	0.462687	4_4:+48409610	None:intergenic
AATTCCATGTCTTGCACCTT+GGG	0.389131	4_4:+48404608	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTATGAAAATGGAGAGTTTA+AGG	-	chr4_4:48404692-48404711	Msa0684780:intron	30.0%
TTTGGATATGGGGATTATTA+TGG	-	chr4_4:48404728-48404747	Msa0684780:intron	30.0%
TTGGATATGGGGATTATTAT+GGG	-	chr4_4:48404729-48404748	Msa0684780:intron	30.0%
AATTTGATGTTTCAAAGGTG+AGG	-	chr4_4:48404880-48404899	Msa0684780:intron	30.0%
ATTGAATTCAAAGGGAAAAG+AGG	+	chr4_4:48404911-48404930	None:intergenic	30.0%
CAACACATGATTGAATTCAA+AGG	+	chr4_4:48404920-48404939	None:intergenic	30.0%
TGTTACAAAACATGCATACA+TGG	-	chr4_4:48405263-48405282	Msa0684780:intron	30.0%
TGTAATCTAAGGGACTTATT+TGG	-	chr4_4:48405457-48405476	Msa0684780:intron	30.0%
GTAATCTAAGGGACTTATTT+GGG	-	chr4_4:48405458-48405477	Msa0684780:intron	30.0%
ATACCACATCACAACAATAA+TGG	+	chr4_4:48405668-48405687	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	48404426	48409753	48404426	ID=Msa0684780;Name=Msa0684780
chr4_4	mRNA	48404426	48409753	48404426	ID=Msa0684780-mRNA-1;Parent=Msa0684780;Name=Msa0684780-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0\|0.4\|0.33\|1\|1\|1\|6\|49\|421
chr4_4	exon	48404426	48404663	48404426	ID=Msa0684780-mRNA-1:exon:12014;Parent=Msa0684780-mRNA-1
chr4_4	exon	48405170	48405262	48405170	ID=Msa0684780-mRNA-1:exon:12013;Parent=Msa0684780-mRNA-1
chr4_4	exon	48405779	48405946	48405779	ID=Msa0684780-mRNA-1:exon:12012;Parent=Msa0684780-mRNA-1
chr4_4	exon	48406032	48406166	48406032	ID=Msa0684780-mRNA-1:exon:12011;Parent=Msa0684780-mRNA-1
chr4_4	exon	48407248	48407457	48407248	ID=Msa0684780-mRNA-1:exon:12010;Parent=Msa0684780-mRNA-1
chr4_4	exon	48409283	48409753	48409283	ID=Msa0684780-mRNA-1:exon:12009;Parent=Msa0684780-mRNA-1
chr4_4	CDS	48409283	48409753	48409283	ID=Msa0684780-mRNA-1:cds;Parent=Msa0684780-mRNA-1
chr4_4	CDS	48407248	48407457	48407248	ID=Msa0684780-mRNA-1:cds;Parent=Msa0684780-mRNA-1
chr4_4	CDS	48406032	48406166	48406032	ID=Msa0684780-mRNA-1:cds;Parent=Msa0684780-mRNA-1
chr4_4	CDS	48405779	48405946	48405779	ID=Msa0684780-mRNA-1:cds;Parent=Msa0684780-mRNA-1
chr4_4	CDS	48405170	48405262	48405170	ID=Msa0684780-mRNA-1:cds;Parent=Msa0684780-mRNA-1
chr4_4	CDS	48404475	48404663	48404475	ID=Msa0684780-mRNA-1:cds;Parent=Msa0684780-mRNA-1
chr4_4	three_prime_UTR	48404426	48404474	48404426	ID=Msa0684780-mRNA-1:three_prime_utr;Parent=Msa0684780-mRNA-1

Gene Sequence

>Msa0684780

ATGTCAAAAACCACCTCATCCATCAGCGACTCTCTCGAAACACCAACGCTCGACGCAGAATCTCCCACACTCCTCCACTCCATCTCATCCCACGGAGGCTACGCCTACGTCCGTATGTCCTCCCTCGCCGCCGCCGGCGACATTCGCGCCGCAGAAGCAGTTCGTGAGATGGCGTGGGAGCAGCTGCACTCCGGTCCTTGGCACTCGGTGTTGCCGGTGTGGCGTGACGCGTACTCGATGGCGTGTTTGCAAGTTGCGAAATGTTGCTATGAAAATGGAGAGTTTAAGGAAGCGCTTAGGGCTTTGGATATGGGGATTATTATGGGTGGGAGTTTGCTTAGAAAGGATTTGGATTCTGCTGTTGTGAAGGTTTCGGAGAAAGCGAGGTTGGTTAAGGTTGATAATGGGAGGTGTAAAGATTTTGGTGGCTCTGAGCATTTACTTGTTGATCTTGAATTTGATGTTTCAAAGGTGCTCCAACTTTTGCCTGTTAAGTCCCTTGCTTCAAAGCTTGTAGTGAAGAGATCCGCCTTGTCACTTGAGGAGTTCCTGAAAGATCATTACCTGGCTGGCTCTCCAGTTATCATCAGCGACTGCATGGCGCACTGGCCAGCCAAGAAAAACTGGAATAATATAGATTACTTGCTAAGAGTTGCTGGTGACCGCACTGTTCCGGTTGAGGTTGGGAAAAACTATTTATGTGCAGATTGGAAGCAAGAGCTAGTTACATTTTCAGAGTTCCTTGATCGGATAAGATCTAATAGCTGTTCTCCTGGTGGTCCTACATATCTTGCTCAGCATCCCTTGTTTGATCAGTTTCTGACACTCTTGAATTGGCAGATAAATGAGCTTCGGAGAGATATCTTTATTCCTGACTATTGTTTTACTGGTGGAGGGGAGCTAAGATCTCTCAATGCTTGGTTTGGTCCAGCTGGAACAGTAACACCATTACACCATGATCCGCATCATAACATACTAGCACAGGTTGTTGGGAAAAAATATGTTAGGCTTTATCCAGCATCTTTGTCTGAGGAACTTTTCCCCTACTCAGAAACCATGCTTTGCAATTCCAGCCAGGTTGATTTAGATGACGTAGATGAATTGAAGTTTCCCAAGGTGCAAGACATGGAATTTGTAGACTGCATTTTAGAGGAAGGTGAAATGTTATATATCCCGCCAAAGTGGTGGCACTATGTGCGGTCTTTAACTACCAGTTTATCAGTTAGCTTTTGGTGGAGTGAGGGTGAAAGTTCATCTCCGTCTTAA

Protein sequence

>Msa0684780

MSKTTSSISDSLETPTLDAESPTLLHSISSHGGYAYVRMSSLAAAGDIRAAEAVREMAWEQLHSGPWHSVLPVWRDAYSMACLQVAKCCYENGEFKEALRALDMGIIMGGSLLRKDLDSAVVKVSEKARLVKVDNGRCKDFGGSEHLLVDLEFDVSKVLQLLPVKSLASKLVVKRSALSLEEFLKDHYLAGSPVIISDCMAHWPAKKNWNNIDYLLRVAGDRTVPVEVGKNYLCADWKQELVTFSEFLDRIRSNSCSPGGPTYLAQHPLFDQFLTLLNWQINELRRDIFIPDYCFTGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYVRLYPASLSEELFPYSETMLCNSSQVDLDDVDELKFPKVQDMEFVDCILEEGEMLYIPPKWWHYVRSLTTSLSVSFWWSEGESSSPS*