Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0916590 | XP_013452293.1 | 96.875 | 192 | 6 | 0 | 7 | 198 | 1 | 192 | 9.51e-135 | 385 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0088550 | Msa0916590 | 0.814645 | 1.386397e-51 | -8.615850e-47 |
| Msa0690380 | Msa0916590 | 0.801042 | 1.084964e-48 | -8.615850e-47 |
| Msa0724550 | Msa0916590 | 0.810343 | 1.208359e-50 | -8.615850e-47 |
| Msa0765130 | Msa0916590 | 0.808822 | 2.564511e-50 | -8.615850e-47 |
| Msa0135360 | Msa0916590 | 0.811329 | 7.391248e-51 | -8.615850e-47 |
| Msa0190640 | Msa0916590 | 0.856191 | 3.802301e-62 | -8.615850e-47 |
| Msa0211670 | Msa0916590 | 0.807240 | 5.568309e-50 | -8.615850e-47 |
| Msa0232910 | Msa0916590 | 0.848782 | 4.921834e-60 | -8.615850e-47 |
| Msa0517490 | Msa0916590 | 0.801841 | 7.443481e-49 | -8.615850e-47 |
| Msa0916170 | Msa0916590 | 0.891514 | 3.706637e-74 | -8.615850e-47 |
| Msa0916590 | Msa0954620 | 0.919837 | 2.730355e-87 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0916590 | MtrunA17_Chr6g0472041 | 96.875 | 192 | 6 | 0 | 7 | 198 | 1 | 192 | 8.75e-139 | 385 |
| Msa0916590 | MtrunA17_Chr1g0203171 | 72.222 | 198 | 55 | 0 | 1 | 198 | 1 | 198 | 3.78e-107 | 305 |
| Msa0916590 | MtrunA17_Chr7g0241061 | 50.000 | 172 | 82 | 2 | 9 | 177 | 6 | 176 | 3.68e-57 | 178 |
| Msa0916590 | MtrunA17_Chr4g0008141 | 48.276 | 174 | 78 | 1 | 21 | 194 | 18 | 179 | 6.33e-57 | 177 |
| Msa0916590 | MtrunA17_Chr4g0008131 | 50.955 | 157 | 76 | 1 | 10 | 166 | 7 | 162 | 4.22e-54 | 171 |
| Msa0916590 | MtrunA17_Chr4g0008121 | 49.697 | 165 | 71 | 1 | 30 | 194 | 27 | 179 | 1.09e-53 | 170 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0916590 | AT5G52390.1 | 57.143 | 196 | 70 | 6 | 11 | 198 | 6 | 195 | 1.99e-71 | 215 |
| Msa0916590 | AT3G54040.1 | 50.000 | 162 | 74 | 3 | 28 | 189 | 26 | 180 | 4.40e-52 | 166 |
| Msa0916590 | AT3G54040.2 | 50.000 | 162 | 74 | 3 | 28 | 189 | 82 | 236 | 2.51e-51 | 166 |
Find 64 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTGACTATGCCAACTTTA+TGG | 0.143672 | 6_2:-38397983 | None:intergenic |
| TAACATTAGCATGAGAAATT+TGG | 0.213364 | 6_2:+38398072 | Msa0916590:CDS |
| TGTCCAGTTTATTTATAATA+AGG | 0.260406 | 6_2:+38401100 | Msa0916590:three_prime_UTR |
| ACAAATAATATATAGGGTTT+TGG | 0.273619 | 6_2:+38401132 | Msa0916590:three_prime_UTR |
| GCCTAAACACCTTGGGAGTT+TGG | 0.292769 | 6_2:-38398009 | None:intergenic |
| TGGCAGGCAAAGAAATAAAA+TGG | 0.302063 | 6_2:-38401289 | None:intergenic |
| GATTGAAGCTGATAAATTAA+AGG | 0.308737 | 6_2:+38399871 | Msa0916590:CDS |
| TTCATGGTTTCAGAGGATTC+TGG | 0.310169 | 6_2:-38400961 | None:intergenic |
| CTTCCTTATTATAAATAAAC+TGG | 0.312097 | 6_2:-38401103 | None:intergenic |
| GCACCAGGACCATTGCATTA+TGG | 0.317688 | 6_2:+38400919 | Msa0916590:CDS |
| ATTAATTTGAAAGAATTTCT+TGG | 0.320433 | 6_2:-38401309 | None:intergenic |
| GGTGGGATTGTTGGTGCAAC+TGG | 0.322423 | 6_2:-38401000 | None:intergenic |
| GTTGATCACAAATAATATAT+AGG | 0.329750 | 6_2:+38401125 | Msa0916590:three_prime_UTR |
| AATTTCTCATGCTAATGTTA+AGG | 0.338744 | 6_2:-38398069 | None:intergenic |
| TTGATCACAAATAATATATA+GGG | 0.339501 | 6_2:+38401126 | Msa0916590:three_prime_UTR |
| TGCATTGGTCACTTTCAATA+TGG | 0.343401 | 6_2:-38399895 | None:intergenic |
| ATTTCTCATGCTAATGTTAA+GGG | 0.343971 | 6_2:-38398068 | None:intergenic |
| AGGTTCAACTGTGAGTTTCA+TGG | 0.358945 | 6_2:-38400977 | None:intergenic |
| ATGCATTAAGTCTTGTGGTT+TGG | 0.385790 | 6_2:+38399913 | Msa0916590:CDS |
| TATGCCAACTTTATGGTAAT+AGG | 0.392760 | 6_2:-38397976 | None:intergenic |
| CCTTGAGCCTCACACAACTT+TGG | 0.393654 | 6_2:-38400847 | None:intergenic |
| ACCAAACTCCCAAGGTGTTT+AGG | 0.400815 | 6_2:+38398008 | Msa0916590:five_prime_UTR |
| TGTTGCAGTGGAAGGAACTC+TGG | 0.425238 | 6_2:+38398117 | Msa0916590:CDS |
| TGCTAATGCTCGTCGAGAAA+TGG | 0.427098 | 6_2:+38400870 | Msa0916590:CDS |
| ACTTAGAATGGTGGGATTGT+TGG | 0.430110 | 6_2:-38401009 | None:intergenic |
| GAGAAGCATGTAAAGAGAAA+TGG | 0.432034 | 6_2:+38399818 | Msa0916590:CDS |
| TCCTCCTATTACCATAAAGT+TGG | 0.446088 | 6_2:+38397972 | Msa0916590:five_prime_UTR |
| GGTTTGGACAGAAAATCCTT+TGG | 0.451628 | 6_2:+38399929 | Msa0916590:CDS |
| CTCTACTTCAACCTTGCTGC+TGG | 0.455905 | 6_2:+38400040 | Msa0916590:CDS |
| ACCTTCTTGTGCTTGAGCTA+TGG | 0.466405 | 6_2:+38398045 | Msa0916590:exon |
| AAGTAGAGATCAACAATGTT+GGG | 0.477139 | 6_2:-38400025 | None:intergenic |
| GAAGTAGAGATCAACAATGT+TGG | 0.484563 | 6_2:-38400026 | None:intergenic |
| AAGCACAAGAAGGTGTCGTT+GGG | 0.485458 | 6_2:-38398036 | None:intergenic |
| ATGGCTGAGATCAAAAGCTC+TGG | 0.492168 | 6_2:+38400889 | Msa0916590:CDS |
| ATTTGAAAGAATTTCTTGGC+AGG | 0.493575 | 6_2:-38401305 | None:intergenic |
| CTGCAAATGCGCATGTGTCT+TGG | 0.507891 | 6_2:-38399766 | None:intergenic |
| AAAAGCTCTCCTACTTAGAA+TGG | 0.511709 | 6_2:-38401021 | None:intergenic |
| CAAGAAGGTGTCGTTGGGAA+TGG | 0.513358 | 6_2:-38398031 | None:intergenic |
| CAAGCACAAGAAGGTGTCGT+TGG | 0.516401 | 6_2:-38398037 | None:intergenic |
| GGGAATGGCCTAAACACCTT+GGG | 0.518612 | 6_2:-38398016 | None:intergenic |
| TTCAACCTTGCTGCTGGTGA+AGG | 0.536326 | 6_2:+38400046 | Msa0916590:CDS |
| TGTGAGTTTCATGGTTTCAG+AGG | 0.536762 | 6_2:-38400968 | None:intergenic |
| GACCAATGCATTAAGTCTTG+TGG | 0.538802 | 6_2:+38399908 | Msa0916590:CDS |
| AGCTCTCCTACTTAGAATGG+TGG | 0.544053 | 6_2:-38401018 | None:intergenic |
| GTTGCAGTGGAAGGAACTCT+GGG | 0.548097 | 6_2:+38398118 | Msa0916590:CDS |
| GGGATTGTTGGTGCAACTGG+AGG | 0.551808 | 6_2:-38400997 | None:intergenic |
| TTTCCATAATGCAATGGTCC+TGG | 0.556398 | 6_2:-38400922 | None:intergenic |
| GCATTTGCAGTGTCATCTGC+AGG | 0.559460 | 6_2:+38399779 | Msa0916590:CDS |
| AGGCAAAGAAATAAAATGGT+TGG | 0.560150 | 6_2:-38401285 | None:intergenic |
| TGGGAATGGCCTAAACACCT+TGG | 0.565204 | 6_2:-38398017 | None:intergenic |
| GCTCTCCTACTTAGAATGGT+GGG | 0.572840 | 6_2:-38401017 | None:intergenic |
| AGCTCTGGAATTGTTGCACC+AGG | 0.572975 | 6_2:+38400904 | Msa0916590:CDS |
| ACAATCCCACCATTCTAAGT+AGG | 0.575676 | 6_2:+38401012 | Msa0916590:exon |
| CCAAAGTTGTGTGAGGCTCA+AGG | 0.580369 | 6_2:+38400847 | Msa0916590:CDS |
| GCCAACTTTATGGTAATAGG+AGG | 0.587765 | 6_2:-38397973 | None:intergenic |
| TGTAACACTGAGGAGAACAA+AGG | 0.597700 | 6_2:-38399994 | None:intergenic |
| AACCACAAGACTTAATGCAT+TGG | 0.598582 | 6_2:-38399910 | None:intergenic |
| GCCATAGCTCAAGCACAAGA+AGG | 0.600313 | 6_2:-38398046 | None:intergenic |
| ATGAACTTTCCATAATGCAA+TGG | 0.608123 | 6_2:-38400928 | None:intergenic |
| GTTTCTTCCAAAGTTGTGTG+AGG | 0.618394 | 6_2:+38400840 | Msa0916590:CDS |
| AGAATCAGATGATATTCCAA+AGG | 0.620017 | 6_2:-38399945 | None:intergenic |
| GTGTGTAACTGTTGTATGAG+AGG | 0.634386 | 6_2:+38401195 | Msa0916590:three_prime_UTR |
| GTGTACCTTCACCAGCAGCA+AGG | 0.664846 | 6_2:-38400051 | None:intergenic |
| TCAATTATACCAAACTCCCA+AGG | 0.666955 | 6_2:+38398000 | Msa0916590:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAAAATTATAAATTTTTT+TGG | + | chr6_2:38398984-38399003 | Msa0916590:intron | 0.0% |
| !!! | AAAAAATTATAAATTTTTTT+GGG | + | chr6_2:38398985-38399004 | Msa0916590:intron | 0.0% |
| !!! | TAAAAAATTATAAATTTTTT+TGG | + | chr6_2:38398984-38399003 | Msa0916590:intron | 0.0% |
| !!! | AAAAAATTATAAATTTTTTT+GGG | + | chr6_2:38398985-38399004 | Msa0916590:intron | 0.0% |
| !! | ACAAAAATTAACTTAATAAT+AGG | + | chr6_2:38399218-38399237 | Msa0916590:intron | 10.0% |
| !! | CAAAAATTAACTTAATAATA+GGG | + | chr6_2:38399219-38399238 | Msa0916590:intron | 10.0% |
| !!! | ATATTTTCATCTTAAATTTT+TGG | + | chr6_2:38399450-38399469 | Msa0916590:intron | 10.0% |
| !!! | AATCAATATTTCTAAAATAA+TGG | + | chr6_2:38399672-38399691 | Msa0916590:intron | 10.0% |
| !! | TTTGATTCAAATTAATATAA+AGG | - | chr6_2:38400744-38400763 | None:intergenic | 10.0% |
| !!! | ATTTTCTTTTAATTTTGTAT+AGG | + | chr6_2:38400814-38400833 | Msa0916590:intron | 10.0% |
| !! | CAAAAAAACTTAACTAATTT+AGG | - | chr6_2:38398243-38398262 | None:intergenic | 15.0% |
| !!! | TTGAATTTTTATAGTTTTGA+TGG | + | chr6_2:38398485-38398504 | Msa0916590:intron | 15.0% |
| !!! | TATGATTTTACTTTAAAAGA+GGG | - | chr6_2:38398809-38398828 | None:intergenic | 15.0% |
| !!! | ATATGATTTTACTTTAAAAG+AGG | - | chr6_2:38398810-38398829 | None:intergenic | 15.0% |
| !!! | TAGTGATTGAAAATTTTATA+GGG | + | chr6_2:38399250-38399269 | Msa0916590:intron | 15.0% |
| !! | GAAAATTTGGTATATTTATA+GGG | + | chr6_2:38399310-38399329 | Msa0916590:intron | 15.0% |
| !!! | TATTTAATCCTTTCTTTTAA+TGG | + | chr6_2:38399343-38399362 | Msa0916590:intron | 15.0% |
| !! | AATTTACTTATAAATGTGAT+CGG | - | chr6_2:38399491-38399510 | None:intergenic | 15.0% |
| !!! | ATGAATTTTATGATTTAAGT+CGG | - | chr6_2:38400164-38400183 | None:intergenic | 15.0% |
| !!! | TAAAATTCTATGATTTTGTA+TGG | - | chr6_2:38400282-38400301 | None:intergenic | 15.0% |
| !!! | ACAAAATCATAGAATTTTAA+AGG | + | chr6_2:38400283-38400302 | Msa0916590:intron | 15.0% |
| !! | TACATAAATGACTAAAAAAA+TGG | - | chr6_2:38400326-38400345 | None:intergenic | 15.0% |
| !!! | TATATTTAGCATTTTTGATT+CGG | + | chr6_2:38400496-38400515 | Msa0916590:intron | 15.0% |
| !! | TTGATCACAAATAATATATA+GGG | + | chr6_2:38401126-38401145 | Msa0916590:three_prime_UTR | 15.0% |
| !!! | ATTAATTTGAAAGAATTTCT+TGG | - | chr6_2:38401312-38401331 | None:intergenic | 15.0% |
| !! | GAATTAATTCAAGTCAAATA+AGG | - | chr6_2:38398520-38398539 | None:intergenic | 20.0% |
| !! | GAATTAATTCAAGTCAAATA+AGG | - | chr6_2:38398520-38398539 | None:intergenic | 20.0% |
| !!! | TGAAGATTGAAAACTTTTAA+GGG | - | chr6_2:38398778-38398797 | None:intergenic | 20.0% |
| !!! | GTAGTGATTGAAAATTTTAT+AGG | + | chr6_2:38399249-38399268 | Msa0916590:intron | 20.0% |
| !! | CGAAAATTTGGTATATTTAT+AGG | + | chr6_2:38399309-38399328 | Msa0916590:intron | 20.0% |
| !! | ATAGAAAAATTGAATTAGCA+AGG | + | chr6_2:38399369-38399388 | Msa0916590:intron | 20.0% |
| !!! | AGAATTTTAAAGGATTTTGA+AGG | + | chr6_2:38400293-38400312 | Msa0916590:intron | 20.0% |
| !!! | ATTTATGTACAAGTATTTTG+TGG | + | chr6_2:38400337-38400356 | Msa0916590:intron | 20.0% |
| !!! | ATTTATGTACATGTATTTTG+TGG | + | chr6_2:38400431-38400450 | Msa0916590:intron | 20.0% |
| !! | ATAATTCATGAAGATAATGA+TGG | - | chr6_2:38400685-38400704 | None:intergenic | 20.0% |
| !! | TGTCCAGTTTATTTATAATA+AGG | + | chr6_2:38401100-38401119 | Msa0916590:three_prime_UTR | 20.0% |
| !! | CTTCCTTATTATAAATAAAC+TGG | - | chr6_2:38401106-38401125 | None:intergenic | 20.0% |
| !! | GTTGATCACAAATAATATAT+AGG | + | chr6_2:38401125-38401144 | Msa0916590:three_prime_UTR | 20.0% |
| !!! | ACAAATAATATATAGGGTTT+TGG | + | chr6_2:38401132-38401151 | Msa0916590:three_prime_UTR | 20.0% |
| ! | ATTTCTCATGCTAATGTTAA+GGG | - | chr6_2:38398071-38398090 | None:intergenic | 25.0% |
| ! | AATTTCTCATGCTAATGTTA+AGG | - | chr6_2:38398072-38398091 | None:intergenic | 25.0% |
| ! | TAACATTAGCATGAGAAATT+TGG | + | chr6_2:38398072-38398091 | Msa0916590:CDS | 25.0% |
| !! | ATGAAGTTTAAGATCATGAT+GGG | - | chr6_2:38398161-38398180 | None:intergenic | 25.0% |
| !! | AATGAAGTTTAAGATCATGA+TGG | - | chr6_2:38398162-38398181 | None:intergenic | 25.0% |
| !!! | GAAGTTTTGAATTTAAATGC+TGG | + | chr6_2:38398431-38398450 | Msa0916590:intron | 25.0% |
| !!! | ACTAAACTAGATAGTTTTGA+TGG | + | chr6_2:38398567-38398586 | Msa0916590:intron | 25.0% |
| ! | CCATCAAAACTATCAAAATA+AGG | - | chr6_2:38398602-38398621 | None:intergenic | 25.0% |
| !!! | CCTTATTTTGATAGTTTTGA+TGG | + | chr6_2:38398599-38398618 | Msa0916590:intron | 25.0% |
| !! | GTGAAGATTGAAAACTTTTA+AGG | - | chr6_2:38398779-38398798 | None:intergenic | 25.0% |
| ! | GAAATGTGAAGAATATTGTA+AGG | - | chr6_2:38399018-38399037 | None:intergenic | 25.0% |
| ! | GAAATGTGAAGAATATTGTA+AGG | - | chr6_2:38399018-38399037 | None:intergenic | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | + | chr6_2:38399278-38399297 | Msa0916590:intron | 25.0% |
| !! | AGTTGAAGGAAAATTTTAGA+GGG | + | chr6_2:38399279-38399298 | Msa0916590:intron | 25.0% |
| ! | TCTATCAACCATTAAAAGAA+AGG | - | chr6_2:38399354-38399373 | None:intergenic | 25.0% |
| ! | AATTCTCTCATTAAGTTTAG+TGG | + | chr6_2:38399408-38399427 | Msa0916590:intron | 25.0% |
| !!! | TTTTTTTACAAATGTGACTG+AGG | + | chr6_2:38399604-38399623 | Msa0916590:intron | 25.0% |
| ! | TCATATAGATCTCTAATATG+TGG | + | chr6_2:38399701-38399720 | Msa0916590:intron | 25.0% |
| ! | GATTGAAGCTGATAAATTAA+AGG | + | chr6_2:38399871-38399890 | Msa0916590:CDS | 25.0% |
| !! | TATTTTGTGGACTTTAAACT+GGG | + | chr6_2:38400350-38400369 | Msa0916590:intron | 25.0% |
| TATGCCAACTTTATGGTAAT+AGG | - | chr6_2:38397979-38397998 | None:intergenic | 30.0% | |
| AATTGACTATGCCAACTTTA+TGG | - | chr6_2:38397986-38398005 | None:intergenic | 30.0% | |
| CACTGCAACAAAAAATACAA+AGG | - | chr6_2:38398107-38398126 | None:intergenic | 30.0% | |
| !!! | CTTTGTATTTTTTGTTGCAG+TGG | + | chr6_2:38398105-38398124 | Msa0916590:CDS | 30.0% |
| ! | CTAATTTAGGTTAGCATGAA+TGG | - | chr6_2:38398230-38398249 | None:intergenic | 30.0% |
| AAATTTCGTCCTATCTTACA+TGG | + | chr6_2:38398350-38398369 | Msa0916590:intron | 30.0% | |
| !! | GTGATTTTCACCTTATTTGA+TGG | + | chr6_2:38398621-38398640 | Msa0916590:intron | 30.0% |
| GTGAAAATCACCATCAAATA+AGG | - | chr6_2:38398634-38398653 | None:intergenic | 30.0% | |
| GACTTCTAGATAACTAAACT+TGG | + | chr6_2:38398555-38398574 | Msa0916590:intron | 30.0% | |
| TTATAGGGACTAAAAGTTGA+AGG | + | chr6_2:38399265-38399284 | Msa0916590:intron | 30.0% | |
| TACTTATAAATGTGATCGGA+TGG | - | chr6_2:38399487-38399506 | None:intergenic | 30.0% | |
| TGTGGTGAAATTAATATTGC+AGG | + | chr6_2:38399719-38399738 | Msa0916590:intron | 30.0% | |
| AGAATCAGATGATATTCCAA+AGG | - | chr6_2:38399948-38399967 | None:intergenic | 30.0% | |
| AAGTAGAGATCAACAATGTT+GGG | - | chr6_2:38400028-38400047 | None:intergenic | 30.0% | |
| !! | ACTAGGATTTTGCTTGTTTT+GGG | - | chr6_2:38400235-38400254 | None:intergenic | 30.0% |
| ! | AACTAGGATTTTGCTTGTTT+TGG | - | chr6_2:38400236-38400255 | None:intergenic | 30.0% |
| !! | GATTTTGATGCGATTTAACT+AGG | - | chr6_2:38400252-38400271 | None:intergenic | 30.0% |
| ! | GTATTTTGTGGACTTTAAAC+TGG | + | chr6_2:38400349-38400368 | Msa0916590:intron | 30.0% |
| AAAATCGCAATCAAAATCGA+TGG | - | chr6_2:38400528-38400547 | None:intergenic | 30.0% | |
| AAAATCGCAATCAAAATCGA+AGG | - | chr6_2:38400528-38400547 | None:intergenic | 30.0% | |
| !! | AATCTCGATTTTAACAACCT+TGG | + | chr6_2:38400653-38400672 | Msa0916590:intron | 30.0% |
| GATAATGATGGTATATACCA+AGG | - | chr6_2:38400673-38400692 | None:intergenic | 30.0% | |
| ATGAACTTTCCATAATGCAA+TGG | - | chr6_2:38400931-38400950 | None:intergenic | 30.0% | |
| !!! | GTTACACACATTATTTTGAG+TGG | - | chr6_2:38401184-38401203 | None:intergenic | 30.0% |
| AGGCAAAGAAATAAAATGGT+TGG | - | chr6_2:38401288-38401307 | None:intergenic | 30.0% | |
| ATTTGAAAGAATTTCTTGGC+AGG | - | chr6_2:38401308-38401327 | None:intergenic | 30.0% | |
| TCCTCCTATTACCATAAAGT+TGG | + | chr6_2:38397972-38397991 | Msa0916590:five_prime_UTR | 35.0% | |
| TCAATTATACCAAACTCCCA+AGG | + | chr6_2:38398000-38398019 | Msa0916590:five_prime_UTR | 35.0% | |
| !!! | GTATTTTTTGTTGCAGTGGA+AGG | + | chr6_2:38398109-38398128 | Msa0916590:CDS | 35.0% |
| GAGGGACTAAAACGAAAATT+TGG | + | chr6_2:38399297-38399316 | Msa0916590:intron | 35.0% | |
| CACTGAACAACTTATGTATC+TGG | + | chr6_2:38399527-38399546 | Msa0916590:intron | 35.0% | |
| GGTGAAATTAATATTGCAGG+AGG | + | chr6_2:38399722-38399741 | Msa0916590:intron | 35.0% | |
| ! | GAGAAGCATGTAAAGAGAAA+TGG | + | chr6_2:38399818-38399837 | Msa0916590:CDS | 35.0% |
| ! | TGCATTGGTCACTTTCAATA+TGG | - | chr6_2:38399898-38399917 | None:intergenic | 35.0% |
| AACCACAAGACTTAATGCAT+TGG | - | chr6_2:38399913-38399932 | None:intergenic | 35.0% | |
| ! | ATGCATTAAGTCTTGTGGTT+TGG | + | chr6_2:38399913-38399932 | Msa0916590:CDS | 35.0% |
| GAAGTAGAGATCAACAATGT+TGG | - | chr6_2:38400029-38400048 | None:intergenic | 35.0% | |
| AAAAGCTCTCCTACTTAGAA+TGG | - | chr6_2:38401024-38401043 | None:intergenic | 35.0% | |
| TGGCAGGCAAAGAAATAAAA+TGG | - | chr6_2:38401292-38401311 | None:intergenic | 35.0% | |
| GCCAACTTTATGGTAATAGG+AGG | - | chr6_2:38397976-38397995 | None:intergenic | 40.0% | |
| TTTCGTCCTATCTTACATGG+AGG | + | chr6_2:38398353-38398372 | Msa0916590:intron | 40.0% | |
| GACCAATGCATTAAGTCTTG+TGG | + | chr6_2:38399908-38399927 | Msa0916590:CDS | 40.0% | |
| GGTTTGGACAGAAAATCCTT+TGG | + | chr6_2:38399929-38399948 | Msa0916590:CDS | 40.0% | |
| ! | CTGAGGAGAACAAAGGTTTT+TGG | - | chr6_2:38399990-38400009 | None:intergenic | 40.0% |
| TGTAACACTGAGGAGAACAA+AGG | - | chr6_2:38399997-38400016 | None:intergenic | 40.0% | |
| ! | GGACAACTTTTGTAACACTG+AGG | - | chr6_2:38400007-38400026 | None:intergenic | 40.0% |
| GTTTCTTCCAAAGTTGTGTG+AGG | + | chr6_2:38400840-38400859 | Msa0916590:CDS | 40.0% | |
| TTTCCATAATGCAATGGTCC+TGG | - | chr6_2:38400925-38400944 | None:intergenic | 40.0% | |
| TTCATGGTTTCAGAGGATTC+TGG | - | chr6_2:38400964-38400983 | None:intergenic | 40.0% | |
| TGTGAGTTTCATGGTTTCAG+AGG | - | chr6_2:38400971-38400990 | None:intergenic | 40.0% | |
| AGGTTCAACTGTGAGTTTCA+TGG | - | chr6_2:38400980-38400999 | None:intergenic | 40.0% | |
| ! | ACTTAGAATGGTGGGATTGT+TGG | - | chr6_2:38401012-38401031 | None:intergenic | 40.0% |
| ACAATCCCACCATTCTAAGT+AGG | + | chr6_2:38401012-38401031 | Msa0916590:exon | 40.0% | |
| GTGTGTAACTGTTGTATGAG+AGG | + | chr6_2:38401195-38401214 | Msa0916590:three_prime_UTR | 40.0% | |
| ! | ACCAAACTCCCAAGGTGTTT+AGG | + | chr6_2:38398008-38398027 | Msa0916590:five_prime_UTR | 45.0% |
| !! | AAGCACAAGAAGGTGTCGTT+GGG | - | chr6_2:38398039-38398058 | None:intergenic | 45.0% |
| ACCTTCTTGTGCTTGAGCTA+TGG | + | chr6_2:38398045-38398064 | Msa0916590:exon | 45.0% | |
| CACACACCTCCATGTAAGAT+AGG | - | chr6_2:38398362-38398381 | None:intergenic | 45.0% | |
| ! | ATCGAGATTTTGCTTCCCGT+CGG | - | chr6_2:38400642-38400661 | None:intergenic | 45.0% |
| TGCTAATGCTCGTCGAGAAA+TGG | + | chr6_2:38400870-38400889 | Msa0916590:CDS | 45.0% | |
| ATGGCTGAGATCAAAAGCTC+TGG | + | chr6_2:38400889-38400908 | Msa0916590:CDS | 45.0% | |
| GCTCTCCTACTTAGAATGGT+GGG | - | chr6_2:38401020-38401039 | None:intergenic | 45.0% | |
| AGCTCTCCTACTTAGAATGG+TGG | - | chr6_2:38401021-38401040 | None:intergenic | 45.0% | |
| !!! | TTAAAAAATTCTATTTTATT+TGG | - | chr6_2:38398894-38398913 | None:intergenic | 5.0% |
| !!! | ATGAATTTTTATATTTTTTA+AGG | + | chr6_2:38398931-38398950 | Msa0916590:intron | 5.0% |
| !!! | ATGAATTTTTATATTTTTTA+AGG | + | chr6_2:38398931-38398950 | Msa0916590:intron | 5.0% |
| GCCTAAACACCTTGGGAGTT+TGG | - | chr6_2:38398012-38398031 | None:intergenic | 50.0% | |
| GGGAATGGCCTAAACACCTT+GGG | - | chr6_2:38398019-38398038 | None:intergenic | 50.0% | |
| TGGGAATGGCCTAAACACCT+TGG | - | chr6_2:38398020-38398039 | None:intergenic | 50.0% | |
| !! | CAAGAAGGTGTCGTTGGGAA+TGG | - | chr6_2:38398034-38398053 | None:intergenic | 50.0% |
| !! | CAAGCACAAGAAGGTGTCGT+TGG | - | chr6_2:38398040-38398059 | None:intergenic | 50.0% |
| GCCATAGCTCAAGCACAAGA+AGG | - | chr6_2:38398049-38398068 | None:intergenic | 50.0% | |
| TGTTGCAGTGGAAGGAACTC+TGG | + | chr6_2:38398117-38398136 | Msa0916590:CDS | 50.0% | |
| GTTGCAGTGGAAGGAACTCT+GGG | + | chr6_2:38398118-38398137 | Msa0916590:CDS | 50.0% | |
| CTGCAAATGCGCATGTGTCT+TGG | - | chr6_2:38399769-38399788 | None:intergenic | 50.0% | |
| GCATTTGCAGTGTCATCTGC+AGG | + | chr6_2:38399779-38399798 | Msa0916590:CDS | 50.0% | |
| CTCTACTTCAACCTTGCTGC+TGG | + | chr6_2:38400040-38400059 | Msa0916590:CDS | 50.0% | |
| TTCAACCTTGCTGCTGGTGA+AGG | + | chr6_2:38400046-38400065 | Msa0916590:CDS | 50.0% | |
| ! | ATTTTGCTCCTCCCTTCCGA+CGG | + | chr6_2:38400623-38400642 | Msa0916590:intron | 50.0% |
| ! | GATTTTGCTTCCCGTCGGAA+GGG | - | chr6_2:38400637-38400656 | None:intergenic | 50.0% |
| ! | AGATTTTGCTTCCCGTCGGA+AGG | - | chr6_2:38400638-38400657 | None:intergenic | 50.0% |
| CCTTGAGCCTCACACAACTT+TGG | - | chr6_2:38400850-38400869 | None:intergenic | 50.0% | |
| CCAAAGTTGTGTGAGGCTCA+AGG | + | chr6_2:38400847-38400866 | Msa0916590:CDS | 50.0% | |
| !! | AGCTCTGGAATTGTTGCACC+AGG | + | chr6_2:38400904-38400923 | Msa0916590:CDS | 50.0% |
| GCACCAGGACCATTGCATTA+TGG | + | chr6_2:38400919-38400938 | Msa0916590:CDS | 50.0% | |
| GTGTACCTTCACCAGCAGCA+AGG | - | chr6_2:38400054-38400073 | None:intergenic | 55.0% | |
| ! | TTTTGCTCCTCCCTTCCGAC+GGG | + | chr6_2:38400624-38400643 | Msa0916590:intron | 55.0% |
| GGGATTGTTGGTGCAACTGG+AGG | - | chr6_2:38401000-38401019 | None:intergenic | 55.0% | |
| GGTGGGATTGTTGGTGCAAC+TGG | - | chr6_2:38401003-38401022 | None:intergenic | 55.0% | |
| TTTGCTTCCCGTCGGAAGGG+AGG | - | chr6_2:38400634-38400653 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 38397966 | 38401348 | 38397966 | ID=Msa0916590;Name=Msa0916590 |
| chr6_2 | mRNA | 38397966 | 38401348 | 38397966 | ID=Msa0916590-mRNA-1;Parent=Msa0916590;Name=Msa0916590-mRNA-1;_AED=0.02;_eAED=0.02;_QI=98|1|1|1|1|1|3|319|198 |
| chr6_2 | exon | 38397966 | 38398139 | 38397966 | ID=Msa0916590-mRNA-1:exon:6383;Parent=Msa0916590-mRNA-1 |
| chr6_2 | exon | 38399741 | 38400067 | 38399741 | ID=Msa0916590-mRNA-1:exon:6384;Parent=Msa0916590-mRNA-1 |
| chr6_2 | exon | 38400836 | 38401348 | 38400836 | ID=Msa0916590-mRNA-1:exon:6385;Parent=Msa0916590-mRNA-1 |
| chr6_2 | five_prime_UTR | 38397966 | 38398063 | 38397966 | ID=Msa0916590-mRNA-1:five_prime_utr;Parent=Msa0916590-mRNA-1 |
| chr6_2 | CDS | 38398064 | 38398139 | 38398064 | ID=Msa0916590-mRNA-1:cds;Parent=Msa0916590-mRNA-1 |
| chr6_2 | CDS | 38399741 | 38400067 | 38399741 | ID=Msa0916590-mRNA-1:cds;Parent=Msa0916590-mRNA-1 |
| chr6_2 | CDS | 38400836 | 38401029 | 38400836 | ID=Msa0916590-mRNA-1:cds;Parent=Msa0916590-mRNA-1 |
| chr6_2 | three_prime_UTR | 38401030 | 38401348 | 38401030 | ID=Msa0916590-mRNA-1:three_prime_utr;Parent=Msa0916590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
