AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0691120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0691120 MtrunA17_Chr4g0040201 94.231 208 11 1 1 207 1 208 8.64e-144 399
Msa0691120 MtrunA17_Chr2g0324511 65.409 159 45 5 8 160 9 163 5.56e-60 185
Msa0691120 MtrunA17_Chr2g0324521 59.483 116 44 2 47 160 2 116 4.87e-39 130
Msa0691120 MtrunA17_Chr2g0324571 57.500 120 42 3 47 160 2 118 4.70e-38 128
Msa0691120 MtrunA17_Chr2g0282341 44.526 137 63 6 50 180 4 133 5.29e-29 105
Msa0691120 MtrunA17_Chr2g0324531 60.465 43 17 0 159 201 2 44 1.01e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0691120 AT4G20970.1 42.328 189 89 8 8 180 2 186 2.11e-32 116
Msa0691120 AT1G10585.1 27.429 175 116 6 10 182 10 175 1.79e-11 60.8

Find 59 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCTTAGAAATTACTTAAA+AGG 0.118257 4_4:+59056024 Msa0691120:five_prime_UTR
ATTTCAAAACATGGTGATTT+TGG 0.176377 4_4:-59056520 None:intergenic
CTAATATTTATATCTAATTA+TGG 0.230205 4_4:+59056073 Msa0691120:exon
TTAGGTCTATCTTAATATAT+AGG 0.260682 4_4:+59056951 Msa0691120:three_prime_UTR
AGAACCTTGGGGTTATAGTT+AGG 0.280194 4_4:-59056215 None:intergenic
TATCTAATTATGGATCAAAT+TGG 0.283616 4_4:+59056083 Msa0691120:exon
AGGGAGAAGAGAGTTGAGTT+TGG 0.296752 4_4:-59056195 None:intergenic
ATAAGAATTATGCTAGATTA+AGG 0.327945 4_4:+59057152 Msa0691120:three_prime_UTR
TAGGTCTATCTTAATATATA+GGG 0.337165 4_4:+59056952 Msa0691120:three_prime_UTR
AATATGTGGGGTTTCTAGTT+AGG 0.344816 4_4:+59056933 Msa0691120:exon
TACAAGACGATTAACTTATC+AGG 0.347401 4_4:-59057177 None:intergenic
ATATTAAGCTAAGAGATTAA+AGG 0.355914 4_4:-59057122 None:intergenic
ATCTTAGAAATTACTTAAAA+GGG 0.370468 4_4:+59056025 Msa0691120:five_prime_UTR
GAGAGTTGAGTTTGGAGTAG+AGG 0.397503 4_4:-59056187 None:intergenic
TGAATTATCTCCAACCTTAG+AGG 0.408147 4_4:-59056662 None:intergenic
GGAATTACCGTTGGCGCTAC+CGG 0.409114 4_4:+59056372 Msa0691120:intron
AACCAGCCTTCTTTCAACTT+TGG 0.410390 4_4:-59056135 None:intergenic
GAACCTTGGGGTTATAGTTA+GGG 0.410715 4_4:-59056214 None:intergenic
TGATTTCATAGAAAATGAAT+TGG 0.411346 4_4:-59056594 None:intergenic
AAGGAGTGTCAATTCCTCTA+AGG 0.421100 4_4:+59056648 Msa0691120:CDS
ATCGCCTCATCTACTTGATC+CGG 0.457881 4_4:-59056391 None:intergenic
TATGTAGGTAGGTTAAGAAT+AGG 0.460145 4_4:-59055981 None:intergenic
TGGCTAAGGAGAAGAAAGAA+AGG 0.476291 4_4:+59056449 Msa0691120:CDS
AAGTGAGTGAGAGATTGAAA+AGG 0.491808 4_4:+59056838 Msa0691120:CDS
GCTAGGGGATATAGCTATGT+AGG 0.500307 4_4:-59055996 None:intergenic
TTGGTTGTATTAGAGCTAGA+AGG 0.500610 4_4:-59056116 None:intergenic
ATGAAGAGAATGTAGACATA+AGG 0.503791 4_4:+59056629 Msa0691120:CDS
ATTTCTAAGATGAACTAGCT+AGG 0.508786 4_4:-59056013 None:intergenic
AGATTGAAAAGGTTTGTGTA+TGG 0.509660 4_4:+59056849 Msa0691120:CDS
TTTCTAAGATGAACTAGCTA+GGG 0.509844 4_4:-59056012 None:intergenic
AGATCACGTGAATATTGCTT+AGG 0.510152 4_4:+59056493 Msa0691120:CDS
TTGGAACTGATCATAATATG+TGG 0.512688 4_4:+59056919 Msa0691120:CDS
CTAAAGTTGTGATTGATTGT+CGG 0.519208 4_4:+59057066 Msa0691120:three_prime_UTR
AGGCTGTATTTCCACATCAC+TGG 0.522661 4_4:-59056877 None:intergenic
ATACAACCAAAGTTGAAAGA+AGG 0.526780 4_4:+59056129 Msa0691120:CDS
TATAATTCAGGAATTACCGT+TGG 0.530375 4_4:+59056363 Msa0691120:intron
ACTTGATCCGGTAGCGCCAA+CGG 0.534008 4_4:-59056379 None:intergenic
ATTTCTTGAATTTCAAAACA+TGG 0.541430 4_4:-59056529 None:intergenic
CCTTCATGTTGTTCATGCTG+AGG 0.541669 4_4:+59056687 Msa0691120:CDS
AACCAAAGTTGAAAGAAGGC+TGG 0.543583 4_4:+59056133 Msa0691120:CDS
TTTAGAGGCAAATGTTGAGA+TGG 0.546113 4_4:+59056429 Msa0691120:CDS
TACAAATCATTCTCACGTGT+GGG 0.548323 4_4:+59056563 Msa0691120:CDS
TGGAACTGATCATAATATGT+GGG 0.553773 4_4:+59056920 Msa0691120:CDS
CTACAAATCATTCTCACGTG+TGG 0.558837 4_4:+59056562 Msa0691120:CDS
AGTGTCAATTCCTCTAAGGT+TGG 0.561526 4_4:+59056652 Msa0691120:CDS
ATTTCAAAATCCCACAACTC+AGG 0.570407 4_4:-59056897 None:intergenic
GGAAATACAGCCTGAGTTGT+GGG 0.582012 4_4:+59056887 Msa0691120:CDS
TCTTAGAAATTACTTAAAAG+GGG 0.582074 4_4:+59056026 Msa0691120:five_prime_UTR
GGGGATATAGCTATGTAGGT+AGG 0.585601 4_4:-59055992 None:intergenic
GCTCCAAATTGAAAACAAGA+TGG 0.586259 4_4:-59056810 None:intergenic
TGGAAATACAGCCTGAGTTG+TGG 0.593486 4_4:+59056886 Msa0691120:CDS
GGCAAATGTTGAGATGGCTA+AGG 0.613070 4_4:+59056435 Msa0691120:CDS
CCTCAGCATGAACAACATGA+AGG 0.636646 4_4:-59056687 None:intergenic
CCAAATTGAAAACAAGATGG+AGG 0.639764 4_4:-59056807 None:intergenic
GGAACTGATCATAATATGTG+GGG 0.640483 4_4:+59056921 Msa0691120:CDS
GTATGGATCTTCCAGTGATG+TGG 0.643608 4_4:+59056866 Msa0691120:CDS
TTCTAAGATGAACTAGCTAG+GGG 0.654537 4_4:-59056011 None:intergenic
TCTCCCTAACTATAACCCCA+AGG 0.657270 4_4:+59056211 Msa0691120:CDS
GCTACCGGATCAAGTAGATG+AGG 0.685176 4_4:+59056387 Msa0691120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTAATATTTATATCTAATTA+TGG + chr4_4:59056073-59056092 Msa0691120:exon 10.0%
!! CTAATATTTATATCTAATTA+TGG + chr4_4:59056073-59056092 Msa0691120:exon 10.0%
!! ATCTTAGAAATTACTTAAAA+GGG + chr4_4:59056025-59056044 Msa0691120:five_prime_UTR 15.0%
!! AAAAAAAAAGTTAGTTACAA+TGG + chr4_4:59056306-59056325 Msa0691120:intron 15.0%
!!! GATGTAATTTTTTATAATTC+AGG + chr4_4:59056351-59056370 Msa0691120:intron 15.0%
!!! TTTATCTTTTACAAAACTTT+TGG - chr4_4:59056981-59057000 None:intergenic 15.0%
!!! TTTTACATTGAAGTTATATA+CGG + chr4_4:59057099-59057118 Msa0691120:three_prime_UTR 15.0%
!! ATCTTAGAAATTACTTAAAA+GGG + chr4_4:59056025-59056044 Msa0691120:five_prime_UTR 15.0%
!! AAAAAAAAAGTTAGTTACAA+TGG + chr4_4:59056306-59056325 Msa0691120:intron 15.0%
!!! GATGTAATTTTTTATAATTC+AGG + chr4_4:59056351-59056370 Msa0691120:intron 15.0%
!!! TTTATCTTTTACAAAACTTT+TGG - chr4_4:59056981-59057000 None:intergenic 15.0%
!!! TTTTACATTGAAGTTATATA+CGG + chr4_4:59057099-59057118 Msa0691120:three_prime_UTR 15.0%
!! CATCTTAGAAATTACTTAAA+AGG + chr4_4:59056024-59056043 Msa0691120:five_prime_UTR 20.0%
!! TCTTAGAAATTACTTAAAAG+GGG + chr4_4:59056026-59056045 Msa0691120:five_prime_UTR 20.0%
!! TATCTAATTATGGATCAAAT+TGG + chr4_4:59056083-59056102 Msa0691120:exon 20.0%
!! AAACTACATAAAAAGTTTAG+AGG + chr4_4:59056414-59056433 Msa0691120:CDS 20.0%
!! ATTTCTTGAATTTCAAAACA+TGG - chr4_4:59056532-59056551 None:intergenic 20.0%
!!! TGTTTTGAAATTCAAGAAAT+TGG + chr4_4:59056532-59056551 Msa0691120:CDS 20.0%
!! TGATTTCATAGAAAATGAAT+TGG - chr4_4:59056597-59056616 None:intergenic 20.0%
!! TTAGGTCTATCTTAATATAT+AGG + chr4_4:59056951-59056970 Msa0691120:three_prime_UTR 20.0%
!! TAGGTCTATCTTAATATATA+GGG + chr4_4:59056952-59056971 Msa0691120:three_prime_UTR 20.0%
!! ATATTAAGCTAAGAGATTAA+AGG - chr4_4:59057125-59057144 None:intergenic 20.0%
!! ATAAGAATTATGCTAGATTA+AGG + chr4_4:59057152-59057171 Msa0691120:three_prime_UTR 20.0%
!! CATCTTAGAAATTACTTAAA+AGG + chr4_4:59056024-59056043 Msa0691120:five_prime_UTR 20.0%
!! TCTTAGAAATTACTTAAAAG+GGG + chr4_4:59056026-59056045 Msa0691120:five_prime_UTR 20.0%
!! TATCTAATTATGGATCAAAT+TGG + chr4_4:59056083-59056102 Msa0691120:exon 20.0%
!! AAACTACATAAAAAGTTTAG+AGG + chr4_4:59056414-59056433 Msa0691120:CDS 20.0%
!! ATTTCTTGAATTTCAAAACA+TGG - chr4_4:59056532-59056551 None:intergenic 20.0%
!!! TGTTTTGAAATTCAAGAAAT+TGG + chr4_4:59056532-59056551 Msa0691120:CDS 20.0%
!! TGATTTCATAGAAAATGAAT+TGG - chr4_4:59056597-59056616 None:intergenic 20.0%
!! TTAGGTCTATCTTAATATAT+AGG + chr4_4:59056951-59056970 Msa0691120:three_prime_UTR 20.0%
!! TAGGTCTATCTTAATATATA+GGG + chr4_4:59056952-59056971 Msa0691120:three_prime_UTR 20.0%
!! ATATTAAGCTAAGAGATTAA+AGG - chr4_4:59057125-59057144 None:intergenic 20.0%
!! ATAAGAATTATGCTAGATTA+AGG + chr4_4:59057152-59057171 Msa0691120:three_prime_UTR 20.0%
! AAGAAAGAAATTAGAACCTT+GGG - chr4_4:59056230-59056249 None:intergenic 25.0%
! AAAGAAAGAAATTAGAACCT+TGG - chr4_4:59056231-59056250 None:intergenic 25.0%
!! ATTTCAAAACATGGTGATTT+TGG - chr4_4:59056523-59056542 None:intergenic 25.0%
! AAGAAAGAAATTAGAACCTT+GGG - chr4_4:59056230-59056249 None:intergenic 25.0%
! AAAGAAAGAAATTAGAACCT+TGG - chr4_4:59056231-59056250 None:intergenic 25.0%
!! ATTTCAAAACATGGTGATTT+TGG - chr4_4:59056523-59056542 None:intergenic 25.0%
TATGTAGGTAGGTTAAGAAT+AGG - chr4_4:59055984-59056003 None:intergenic 30.0%
!! TTTCTAAGATGAACTAGCTA+GGG - chr4_4:59056015-59056034 None:intergenic 30.0%
!! ATTTCTAAGATGAACTAGCT+AGG - chr4_4:59056016-59056035 None:intergenic 30.0%
ATACAACCAAAGTTGAAAGA+AGG + chr4_4:59056129-59056148 Msa0691120:CDS 30.0%
AGAAAGAAATTAGAACCTTG+GGG - chr4_4:59056229-59056248 None:intergenic 30.0%
ACAATACTAGTTAGCTACAA+TGG + chr4_4:59056272-59056291 Msa0691120:intron 30.0%
TATAATTCAGGAATTACCGT+TGG + chr4_4:59056363-59056382 Msa0691120:intron 30.0%
ATGAAGAGAATGTAGACATA+AGG + chr4_4:59056629-59056648 Msa0691120:CDS 30.0%
ATAAAGAGAGAGCAATTACT+AGG - chr4_4:59056780-59056799 None:intergenic 30.0%
AGATTGAAAAGGTTTGTGTA+TGG + chr4_4:59056849-59056868 Msa0691120:CDS 30.0%
TTGGAACTGATCATAATATG+TGG + chr4_4:59056919-59056938 Msa0691120:CDS 30.0%
TGGAACTGATCATAATATGT+GGG + chr4_4:59056920-59056939 Msa0691120:CDS 30.0%
CTAAAGTTGTGATTGATTGT+CGG + chr4_4:59057066-59057085 Msa0691120:three_prime_UTR 30.0%
TATGTAGGTAGGTTAAGAAT+AGG - chr4_4:59055984-59056003 None:intergenic 30.0%
!! TTTCTAAGATGAACTAGCTA+GGG - chr4_4:59056015-59056034 None:intergenic 30.0%
!! ATTTCTAAGATGAACTAGCT+AGG - chr4_4:59056016-59056035 None:intergenic 30.0%
ATACAACCAAAGTTGAAAGA+AGG + chr4_4:59056129-59056148 Msa0691120:CDS 30.0%
AGAAAGAAATTAGAACCTTG+GGG - chr4_4:59056229-59056248 None:intergenic 30.0%
ACAATACTAGTTAGCTACAA+TGG + chr4_4:59056272-59056291 Msa0691120:intron 30.0%
TATAATTCAGGAATTACCGT+TGG + chr4_4:59056363-59056382 Msa0691120:intron 30.0%
ATGAAGAGAATGTAGACATA+AGG + chr4_4:59056629-59056648 Msa0691120:CDS 30.0%
ATAAAGAGAGAGCAATTACT+AGG - chr4_4:59056780-59056799 None:intergenic 30.0%
AGATTGAAAAGGTTTGTGTA+TGG + chr4_4:59056849-59056868 Msa0691120:CDS 30.0%
TTGGAACTGATCATAATATG+TGG + chr4_4:59056919-59056938 Msa0691120:CDS 30.0%
TGGAACTGATCATAATATGT+GGG + chr4_4:59056920-59056939 Msa0691120:CDS 30.0%
CTAAAGTTGTGATTGATTGT+CGG + chr4_4:59057066-59057085 Msa0691120:three_prime_UTR 30.0%
!! TTCTAAGATGAACTAGCTAG+GGG - chr4_4:59056014-59056033 None:intergenic 35.0%
TTGGTTGTATTAGAGCTAGA+AGG - chr4_4:59056119-59056138 None:intergenic 35.0%
TTTAGAGGCAAATGTTGAGA+TGG + chr4_4:59056429-59056448 Msa0691120:CDS 35.0%
AGATCACGTGAATATTGCTT+AGG + chr4_4:59056493-59056512 Msa0691120:CDS 35.0%
TACAAATCATTCTCACGTGT+GGG + chr4_4:59056563-59056582 Msa0691120:CDS 35.0%
TGAATTATCTCCAACCTTAG+AGG - chr4_4:59056665-59056684 None:intergenic 35.0%
CCAAATTGAAAACAAGATGG+AGG - chr4_4:59056810-59056829 None:intergenic 35.0%
!!! CCTCCATCTTGTTTTCAATT+TGG + chr4_4:59056807-59056826 Msa0691120:CDS 35.0%
GCTCCAAATTGAAAACAAGA+TGG - chr4_4:59056813-59056832 None:intergenic 35.0%
AAGTGAGTGAGAGATTGAAA+AGG + chr4_4:59056838-59056857 Msa0691120:CDS 35.0%
ATTTCAAAATCCCACAACTC+AGG - chr4_4:59056900-59056919 None:intergenic 35.0%
!!! GAGTTGTGGGATTTTGAAAT+TGG + chr4_4:59056900-59056919 Msa0691120:CDS 35.0%
GGAACTGATCATAATATGTG+GGG + chr4_4:59056921-59056940 Msa0691120:CDS 35.0%
!! AATATGTGGGGTTTCTAGTT+AGG + chr4_4:59056933-59056952 Msa0691120:exon 35.0%
!! TTCTAAGATGAACTAGCTAG+GGG - chr4_4:59056014-59056033 None:intergenic 35.0%
TTGGTTGTATTAGAGCTAGA+AGG - chr4_4:59056119-59056138 None:intergenic 35.0%
TTTAGAGGCAAATGTTGAGA+TGG + chr4_4:59056429-59056448 Msa0691120:CDS 35.0%
AGATCACGTGAATATTGCTT+AGG + chr4_4:59056493-59056512 Msa0691120:CDS 35.0%
TACAAATCATTCTCACGTGT+GGG + chr4_4:59056563-59056582 Msa0691120:CDS 35.0%
TGAATTATCTCCAACCTTAG+AGG - chr4_4:59056665-59056684 None:intergenic 35.0%
CCAAATTGAAAACAAGATGG+AGG - chr4_4:59056810-59056829 None:intergenic 35.0%
!!! CCTCCATCTTGTTTTCAATT+TGG + chr4_4:59056807-59056826 Msa0691120:CDS 35.0%
GCTCCAAATTGAAAACAAGA+TGG - chr4_4:59056813-59056832 None:intergenic 35.0%
AAGTGAGTGAGAGATTGAAA+AGG + chr4_4:59056838-59056857 Msa0691120:CDS 35.0%
ATTTCAAAATCCCACAACTC+AGG - chr4_4:59056900-59056919 None:intergenic 35.0%
!!! GAGTTGTGGGATTTTGAAAT+TGG + chr4_4:59056900-59056919 Msa0691120:CDS 35.0%
GGAACTGATCATAATATGTG+GGG + chr4_4:59056921-59056940 Msa0691120:CDS 35.0%
!! AATATGTGGGGTTTCTAGTT+AGG + chr4_4:59056933-59056952 Msa0691120:exon 35.0%
AACCAAAGTTGAAAGAAGGC+TGG + chr4_4:59056133-59056152 Msa0691120:CDS 40.0%
AACCAGCCTTCTTTCAACTT+TGG - chr4_4:59056138-59056157 None:intergenic 40.0%
GAACCTTGGGGTTATAGTTA+GGG - chr4_4:59056217-59056236 None:intergenic 40.0%
AGAACCTTGGGGTTATAGTT+AGG - chr4_4:59056218-59056237 None:intergenic 40.0%
TGGCTAAGGAGAAGAAAGAA+AGG + chr4_4:59056449-59056468 Msa0691120:CDS 40.0%
CTACAAATCATTCTCACGTG+TGG + chr4_4:59056562-59056581 Msa0691120:CDS 40.0%
!! AAGGAGTGTCAATTCCTCTA+AGG + chr4_4:59056648-59056667 Msa0691120:CDS 40.0%
!! AGTGTCAATTCCTCTAAGGT+TGG + chr4_4:59056652-59056671 Msa0691120:CDS 40.0%
AACCAAAGTTGAAAGAAGGC+TGG + chr4_4:59056133-59056152 Msa0691120:CDS 40.0%
AACCAGCCTTCTTTCAACTT+TGG - chr4_4:59056138-59056157 None:intergenic 40.0%
GAACCTTGGGGTTATAGTTA+GGG - chr4_4:59056217-59056236 None:intergenic 40.0%
AGAACCTTGGGGTTATAGTT+AGG - chr4_4:59056218-59056237 None:intergenic 40.0%
TGGCTAAGGAGAAGAAAGAA+AGG + chr4_4:59056449-59056468 Msa0691120:CDS 40.0%
CTACAAATCATTCTCACGTG+TGG + chr4_4:59056562-59056581 Msa0691120:CDS 40.0%
!! AAGGAGTGTCAATTCCTCTA+AGG + chr4_4:59056648-59056667 Msa0691120:CDS 40.0%
!! AGTGTCAATTCCTCTAAGGT+TGG + chr4_4:59056652-59056671 Msa0691120:CDS 40.0%
GGGGATATAGCTATGTAGGT+AGG - chr4_4:59055995-59056014 None:intergenic 45.0%
GCTAGGGGATATAGCTATGT+AGG - chr4_4:59055999-59056018 None:intergenic 45.0%
! GAGAGTTGAGTTTGGAGTAG+AGG - chr4_4:59056190-59056209 None:intergenic 45.0%
AGGGAGAAGAGAGTTGAGTT+TGG - chr4_4:59056198-59056217 None:intergenic 45.0%
TCTCCCTAACTATAACCCCA+AGG + chr4_4:59056211-59056230 Msa0691120:CDS 45.0%
ATCGCCTCATCTACTTGATC+CGG - chr4_4:59056394-59056413 None:intergenic 45.0%
GGCAAATGTTGAGATGGCTA+AGG + chr4_4:59056435-59056454 Msa0691120:CDS 45.0%
CCTCAGCATGAACAACATGA+AGG - chr4_4:59056690-59056709 None:intergenic 45.0%
CCTTCATGTTGTTCATGCTG+AGG + chr4_4:59056687-59056706 Msa0691120:CDS 45.0%
GTATGGATCTTCCAGTGATG+TGG + chr4_4:59056866-59056885 Msa0691120:CDS 45.0%
AGGCTGTATTTCCACATCAC+TGG - chr4_4:59056880-59056899 None:intergenic 45.0%
TGGAAATACAGCCTGAGTTG+TGG + chr4_4:59056886-59056905 Msa0691120:CDS 45.0%
GGAAATACAGCCTGAGTTGT+GGG + chr4_4:59056887-59056906 Msa0691120:CDS 45.0%
GGGGATATAGCTATGTAGGT+AGG - chr4_4:59055995-59056014 None:intergenic 45.0%
GCTAGGGGATATAGCTATGT+AGG - chr4_4:59055999-59056018 None:intergenic 45.0%
! GAGAGTTGAGTTTGGAGTAG+AGG - chr4_4:59056190-59056209 None:intergenic 45.0%
AGGGAGAAGAGAGTTGAGTT+TGG - chr4_4:59056198-59056217 None:intergenic 45.0%
TCTCCCTAACTATAACCCCA+AGG + chr4_4:59056211-59056230 Msa0691120:CDS 45.0%
ATCGCCTCATCTACTTGATC+CGG - chr4_4:59056394-59056413 None:intergenic 45.0%
GGCAAATGTTGAGATGGCTA+AGG + chr4_4:59056435-59056454 Msa0691120:CDS 45.0%
CCTCAGCATGAACAACATGA+AGG - chr4_4:59056690-59056709 None:intergenic 45.0%
CCTTCATGTTGTTCATGCTG+AGG + chr4_4:59056687-59056706 Msa0691120:CDS 45.0%
GTATGGATCTTCCAGTGATG+TGG + chr4_4:59056866-59056885 Msa0691120:CDS 45.0%
AGGCTGTATTTCCACATCAC+TGG - chr4_4:59056880-59056899 None:intergenic 45.0%
TGGAAATACAGCCTGAGTTG+TGG + chr4_4:59056886-59056905 Msa0691120:CDS 45.0%
GGAAATACAGCCTGAGTTGT+GGG + chr4_4:59056887-59056906 Msa0691120:CDS 45.0%
GCTACCGGATCAAGTAGATG+AGG + chr4_4:59056387-59056406 Msa0691120:CDS 50.0%
GCTACCGGATCAAGTAGATG+AGG + chr4_4:59056387-59056406 Msa0691120:CDS 50.0%
GGAATTACCGTTGGCGCTAC+CGG + chr4_4:59056372-59056391 Msa0691120:intron 55.0%
ACTTGATCCGGTAGCGCCAA+CGG - chr4_4:59056382-59056401 None:intergenic 55.0%
GGAATTACCGTTGGCGCTAC+CGG + chr4_4:59056372-59056391 Msa0691120:intron 55.0%
ACTTGATCCGGTAGCGCCAA+CGG - chr4_4:59056382-59056401 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 59055974 59057187 59055974 ID=Msa0691120;Name=Msa0691120
chr4_4 mRNA 59055974 59057187 59055974 ID=Msa0691120-mRNA-1;Parent=Msa0691120;Name=Msa0691120-mRNA-1;_AED=0.07;_eAED=0.07;_QI=118|1|1|1|1|1|3|237|207
chr4_4 exon 59055974 59056232 59055974 ID=Msa0691120-mRNA-1:exon:15954;Parent=Msa0691120-mRNA-1
chr4_4 exon 59056373 59056708 59056373 ID=Msa0691120-mRNA-1:exon:15955;Parent=Msa0691120-mRNA-1
chr4_4 exon 59056804 59057187 59056804 ID=Msa0691120-mRNA-1:exon:15956;Parent=Msa0691120-mRNA-1
chr4_4 five_prime_UTR 59055974 59056091 59055974 ID=Msa0691120-mRNA-1:five_prime_utr;Parent=Msa0691120-mRNA-1
chr4_4 CDS 59056092 59056232 59056092 ID=Msa0691120-mRNA-1:cds;Parent=Msa0691120-mRNA-1
chr4_4 CDS 59056373 59056708 59056373 ID=Msa0691120-mRNA-1:cds;Parent=Msa0691120-mRNA-1
chr4_4 CDS 59056804 59056950 59056804 ID=Msa0691120-mRNA-1:cds;Parent=Msa0691120-mRNA-1
chr4_4 three_prime_UTR 59056951 59057187 59056951 ID=Msa0691120-mRNA-1:three_prime_utr;Parent=Msa0691120-mRNA-1
Gene Sequence

>Msa0691120

ATGGATCAAATTGGAAGTGATCAACCTTCTAGCTCTAATACAACCAAAGTTGAAAGAAGGCTGGTTGAGAAAAACAGAAGAAATCAGATGAAGATCCTCTACTCCAAACTCAACTCTCTTCTCCCTAACTATAACCCCAAGGAATTACCGTTGGCGCTACCGGATCAAGTAGATGAGGCGATAAACTACATAAAAAGTTTAGAGGCAAATGTTGAGATGGCTAAGGAGAAGAAAGAAAGGTTATTAGCAGTAAAGAAGAAAAGATCACGTGAATATTGCTTAGGTCTACCAAAATCACCATGTTTTGAAATTCAAGAAATTGGTTCTTCTCTACAAATCATTCTCACGTGTGGGTTTGATAACCAATTCATTTTCTATGAAATCATTCGTGTGTTACATGAAGAGAATGTAGACATAAGGAGTGTCAATTCCTCTAAGGTTGGAGATAATTCACTCCTTCATGTTGTTCATGCTGAGATTCCTCCATCTTGTTTTCAATTTGGAGCGACGAAAGTGAGTGAGAGATTGAAAAGGTTTGTGTATGGATCTTCCAGTGATGTGGAAATACAGCCTGAGTTGTGGGATTTTGAAATTGGAACTGATCATAATATGTGGGGTTTCTAG
Protein sequence

>Msa0691120

MDQIGSDQPSSSNTTKVERRLVEKNRRNQMKILYSKLNSLLPNYNPKELPLALPDQVDEAINYIKSLEANVEMAKEKKERLLAVKKKRSREYCLGLPKSPCFEIQEIGSSLQIILTCGFDNQFIFYEIIRVLHEENVDIRSVNSSKVGDNSLLHVVHAEIPPSCFQFGATKVSERLKRFVYGSSSDVEIQPELWDFEIGTDHNMWGF*