AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1445680

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1445680 MtrunA17_Chr4g0040201 94.375 160 9 0 1 160 1 160 1.97e-108 307
Msa1445680 MtrunA17_Chr2g0324511 65.644 163 46 5 6 162 7 165 5.89e-63 191
Msa1445680 MtrunA17_Chr2g0324521 61.017 118 43 2 47 162 2 118 8.52e-42 136
Msa1445680 MtrunA17_Chr2g0324571 59.016 122 41 3 47 162 2 120 6.00e-41 134
Msa1445680 MtrunA17_Chr2g0282341 46.087 115 55 4 50 160 4 115 1.35e-25 95.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1445680 AT4G20970.1 44.643 168 76 6 8 160 2 167 7.92e-32 113

Find 60 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCTTAGAAATTACTTAAA+AGG 0.118257 tig0031163:+12902 Msa1445680:five_prime_UTR
ATTTCAAAACATGGTGATTT+TGG 0.176377 tig0031163:-13397 None:intergenic
TTAGGTCTATCTTAATATAT+AGG 0.260682 tig0031163:+13827 Msa1445680:three_prime_UTR
ACTAATATTATATCTAATTA+TGG 0.272735 tig0031163:+12950 Msa1445680:exon
TATCTAATTATGGATCAAAT+TGG 0.273003 tig0031163:+12960 Msa1445680:exon
AGAACCTTGGGGTTATAGTT+AGG 0.280194 tig0031163:-13092 None:intergenic
AGGGAGAAGAGAGTTGAGTT+TGG 0.296752 tig0031163:-13072 None:intergenic
ATAAGAATTATGCTAGATTA+AGG 0.327945 tig0031163:+14028 Msa1445680:three_prime_UTR
TAGGTCTATCTTAATATATA+GGG 0.337165 tig0031163:+13828 Msa1445680:three_prime_UTR
AATATGTGGGGTTTCTAGTT+AGG 0.344816 tig0031163:+13809 Msa1445680:three_prime_UTR
TACAAGACGATTAACTTATC+AGG 0.347401 tig0031163:-14053 None:intergenic
ATATTAAGCTAAGAGATTAA+AGG 0.355914 tig0031163:-13998 None:intergenic
ATCTTAGAAATTACTTAAAA+GGG 0.370468 tig0031163:+12903 Msa1445680:five_prime_UTR
GAGAGTTGAGTTTGGAGTAG+AGG 0.397503 tig0031163:-13064 None:intergenic
TGAATTATCTCCAACCTTAG+AGG 0.408147 tig0031163:-13539 None:intergenic
GGAATTACCGTTGGCGCTAC+CGG 0.409114 tig0031163:+13249 Msa1445680:intron
AACCAGCCTTCTTTCAACTT+TGG 0.410390 tig0031163:-13012 None:intergenic
GAACCTTGGGGTTATAGTTA+GGG 0.410715 tig0031163:-13091 None:intergenic
TGATTTCATAGAAAATGAAT+TGG 0.411346 tig0031163:-13471 None:intergenic
AAGGAGTGTCAATTCCTCTA+AGG 0.421100 tig0031163:+13525 Msa1445680:CDS
ATCGCCTCATCTACTTGATC+CGG 0.457881 tig0031163:-13268 None:intergenic
TATGTAGGTAGGTTAAGAAT+AGG 0.460145 tig0031163:-12859 None:intergenic
TGGCTAAGGAGAAGAAAGAA+AGG 0.476291 tig0031163:+13326 Msa1445680:CDS
AAGTGAGTGAGAGATTGAAA+AGG 0.491808 tig0031163:+13714 Msa1445680:three_prime_UTR
GCTAGGGGATATAGCTATGT+AGG 0.500307 tig0031163:-12874 None:intergenic
TTGGTTGTATTAGAGCTAGA+AGG 0.500610 tig0031163:-12993 None:intergenic
ATGAAGAGAATGTAGACATA+AGG 0.503791 tig0031163:+13506 Msa1445680:CDS
ATTTCTAAGATGAACTAGCT+AGG 0.508786 tig0031163:-12891 None:intergenic
AGATTGAAAAGGTTTGTGTA+TGG 0.509660 tig0031163:+13725 Msa1445680:three_prime_UTR
TTTCTAAGATGAACTAGCTA+GGG 0.509844 tig0031163:-12890 None:intergenic
AGATCACGTGAATATTGCTT+AGG 0.510152 tig0031163:+13370 Msa1445680:CDS
TTGGAACTGATCATAATATG+TGG 0.512688 tig0031163:+13795 Msa1445680:three_prime_UTR
CTAAAGTTGTGATTGATTGT+CGG 0.519208 tig0031163:+13942 Msa1445680:three_prime_UTR
AGGCTGTATTTCCACATCAC+TGG 0.522661 tig0031163:-13753 None:intergenic
ATACAACCAAAGTTGAAAGA+AGG 0.526780 tig0031163:+13006 Msa1445680:CDS
TATAATTCAGGAATTACCGT+TGG 0.530375 tig0031163:+13240 Msa1445680:intron
ATAAAGAGAGAGCAATTACT+AGG 0.532878 tig0031163:-13653 None:intergenic
ACTTGATCCGGTAGCGCCAA+CGG 0.534008 tig0031163:-13256 None:intergenic
ATTTCTTGAATTTCAAAACA+TGG 0.541430 tig0031163:-13406 None:intergenic
CCTTCATGTTGTTCATGCTG+AGG 0.541669 tig0031163:+13564 Msa1445680:CDS
AACCAAAGTTGAAAGAAGGC+TGG 0.543583 tig0031163:+13010 Msa1445680:CDS
TTTAGAGGCAAATGTTGAGA+TGG 0.546113 tig0031163:+13306 Msa1445680:CDS
TACAAATCATTCTCACGTGT+GGG 0.548323 tig0031163:+13440 Msa1445680:CDS
TGGAACTGATCATAATATGT+GGG 0.553773 tig0031163:+13796 Msa1445680:three_prime_UTR
CTACAAATCATTCTCACGTG+TGG 0.558837 tig0031163:+13439 Msa1445680:CDS
AGTGTCAATTCCTCTAAGGT+TGG 0.561526 tig0031163:+13529 Msa1445680:CDS
ATTTCAAAATCCCACAACTC+AGG 0.570407 tig0031163:-13773 None:intergenic
GGAAATACAGCCTGAGTTGT+GGG 0.582012 tig0031163:+13763 Msa1445680:three_prime_UTR
TCTTAGAAATTACTTAAAAG+GGG 0.582074 tig0031163:+12904 Msa1445680:five_prime_UTR
GGGGATATAGCTATGTAGGT+AGG 0.585601 tig0031163:-12870 None:intergenic
GCTCCAAATTGAAAACAAGA+TGG 0.586259 tig0031163:-13686 None:intergenic
TGGAAATACAGCCTGAGTTG+TGG 0.593486 tig0031163:+13762 Msa1445680:three_prime_UTR
GGCAAATGTTGAGATGGCTA+AGG 0.613070 tig0031163:+13312 Msa1445680:CDS
CCTCAGCATGAACAACATGA+AGG 0.636646 tig0031163:-13564 None:intergenic
CCAAATTGAAAACAAGATGG+AGG 0.639764 tig0031163:-13683 None:intergenic
GGAACTGATCATAATATGTG+GGG 0.640483 tig0031163:+13797 Msa1445680:three_prime_UTR
GTATGGATCTTCCAGTGATG+TGG 0.643608 tig0031163:+13742 Msa1445680:three_prime_UTR
TTCTAAGATGAACTAGCTAG+GGG 0.654537 tig0031163:-12889 None:intergenic
TCTCCCTAACTATAACCCCA+AGG 0.657270 tig0031163:+13088 Msa1445680:CDS
GCTACCGGATCAAGTAGATG+AGG 0.685176 tig0031163:+13264 Msa1445680:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTAATATTATATCTAATTA+TGG + tig0031163:12950-12969 Msa1445680:exon 10.0%
!! ACTAATATTATATCTAATTA+TGG + tig0031163:12950-12969 Msa1445680:exon 10.0%
!! ATCTTAGAAATTACTTAAAA+GGG + tig0031163:12903-12922 Msa1445680:five_prime_UTR 15.0%
!! AAAAAAAAAGTTAGTTACAA+TGG + tig0031163:13183-13202 Msa1445680:intron 15.0%
!!! GATGTAATTTTTTATAATTC+AGG + tig0031163:13228-13247 Msa1445680:intron 15.0%
!!! TTTATCTTTTACAAAACTTT+TGG - tig0031163:13857-13876 None:intergenic 15.0%
!!! TTTTACATTGAAGTTATATA+CGG + tig0031163:13975-13994 Msa1445680:three_prime_UTR 15.0%
!! ATCTTAGAAATTACTTAAAA+GGG + tig0031163:12903-12922 Msa1445680:five_prime_UTR 15.0%
!! AAAAAAAAAGTTAGTTACAA+TGG + tig0031163:13183-13202 Msa1445680:intron 15.0%
!!! GATGTAATTTTTTATAATTC+AGG + tig0031163:13228-13247 Msa1445680:intron 15.0%
!!! TTTATCTTTTACAAAACTTT+TGG - tig0031163:13857-13876 None:intergenic 15.0%
!!! TTTTACATTGAAGTTATATA+CGG + tig0031163:13975-13994 Msa1445680:three_prime_UTR 15.0%
!! CATCTTAGAAATTACTTAAA+AGG + tig0031163:12902-12921 Msa1445680:five_prime_UTR 20.0%
!! TCTTAGAAATTACTTAAAAG+GGG + tig0031163:12904-12923 Msa1445680:five_prime_UTR 20.0%
!! TATCTAATTATGGATCAAAT+TGG + tig0031163:12960-12979 Msa1445680:exon 20.0%
!! AAACTACATAAAAAGTTTAG+AGG + tig0031163:13291-13310 Msa1445680:CDS 20.0%
!! ATTTCTTGAATTTCAAAACA+TGG - tig0031163:13409-13428 None:intergenic 20.0%
!!! TGTTTTGAAATTCAAGAAAT+TGG + tig0031163:13409-13428 Msa1445680:CDS 20.0%
!! TGATTTCATAGAAAATGAAT+TGG - tig0031163:13474-13493 None:intergenic 20.0%
!! TTAGGTCTATCTTAATATAT+AGG + tig0031163:13827-13846 Msa1445680:three_prime_UTR 20.0%
!! TAGGTCTATCTTAATATATA+GGG + tig0031163:13828-13847 Msa1445680:three_prime_UTR 20.0%
!! ATATTAAGCTAAGAGATTAA+AGG - tig0031163:14001-14020 None:intergenic 20.0%
!! ATAAGAATTATGCTAGATTA+AGG + tig0031163:14028-14047 Msa1445680:three_prime_UTR 20.0%
!! CATCTTAGAAATTACTTAAA+AGG + tig0031163:12902-12921 Msa1445680:five_prime_UTR 20.0%
!! TCTTAGAAATTACTTAAAAG+GGG + tig0031163:12904-12923 Msa1445680:five_prime_UTR 20.0%
!! TATCTAATTATGGATCAAAT+TGG + tig0031163:12960-12979 Msa1445680:exon 20.0%
!! AAACTACATAAAAAGTTTAG+AGG + tig0031163:13291-13310 Msa1445680:CDS 20.0%
!! ATTTCTTGAATTTCAAAACA+TGG - tig0031163:13409-13428 None:intergenic 20.0%
!!! TGTTTTGAAATTCAAGAAAT+TGG + tig0031163:13409-13428 Msa1445680:CDS 20.0%
!! TGATTTCATAGAAAATGAAT+TGG - tig0031163:13474-13493 None:intergenic 20.0%
!! TTAGGTCTATCTTAATATAT+AGG + tig0031163:13827-13846 Msa1445680:three_prime_UTR 20.0%
!! TAGGTCTATCTTAATATATA+GGG + tig0031163:13828-13847 Msa1445680:three_prime_UTR 20.0%
!! ATATTAAGCTAAGAGATTAA+AGG - tig0031163:14001-14020 None:intergenic 20.0%
!! ATAAGAATTATGCTAGATTA+AGG + tig0031163:14028-14047 Msa1445680:three_prime_UTR 20.0%
! AAGAAAGAAATTAGAACCTT+GGG - tig0031163:13107-13126 None:intergenic 25.0%
! AAAGAAAGAAATTAGAACCT+TGG - tig0031163:13108-13127 None:intergenic 25.0%
!! ATTTCAAAACATGGTGATTT+TGG - tig0031163:13400-13419 None:intergenic 25.0%
! AAGAAAGAAATTAGAACCTT+GGG - tig0031163:13107-13126 None:intergenic 25.0%
! AAAGAAAGAAATTAGAACCT+TGG - tig0031163:13108-13127 None:intergenic 25.0%
!! ATTTCAAAACATGGTGATTT+TGG - tig0031163:13400-13419 None:intergenic 25.0%
TATGTAGGTAGGTTAAGAAT+AGG - tig0031163:12862-12881 None:intergenic 30.0%
!! TTTCTAAGATGAACTAGCTA+GGG - tig0031163:12893-12912 None:intergenic 30.0%
!! ATTTCTAAGATGAACTAGCT+AGG - tig0031163:12894-12913 None:intergenic 30.0%
ATACAACCAAAGTTGAAAGA+AGG + tig0031163:13006-13025 Msa1445680:CDS 30.0%
AGAAAGAAATTAGAACCTTG+GGG - tig0031163:13106-13125 None:intergenic 30.0%
ACAATACTAGTTAGCTACAA+TGG + tig0031163:13149-13168 Msa1445680:intron 30.0%
TATAATTCAGGAATTACCGT+TGG + tig0031163:13240-13259 Msa1445680:intron 30.0%
ATGAAGAGAATGTAGACATA+AGG + tig0031163:13506-13525 Msa1445680:CDS 30.0%
ATAAAGAGAGAGCAATTACT+AGG - tig0031163:13656-13675 None:intergenic 30.0%
AGATTGAAAAGGTTTGTGTA+TGG + tig0031163:13725-13744 Msa1445680:three_prime_UTR 30.0%
TTGGAACTGATCATAATATG+TGG + tig0031163:13795-13814 Msa1445680:three_prime_UTR 30.0%
TGGAACTGATCATAATATGT+GGG + tig0031163:13796-13815 Msa1445680:three_prime_UTR 30.0%
CTAAAGTTGTGATTGATTGT+CGG + tig0031163:13942-13961 Msa1445680:three_prime_UTR 30.0%
TATGTAGGTAGGTTAAGAAT+AGG - tig0031163:12862-12881 None:intergenic 30.0%
!! TTTCTAAGATGAACTAGCTA+GGG - tig0031163:12893-12912 None:intergenic 30.0%
!! ATTTCTAAGATGAACTAGCT+AGG - tig0031163:12894-12913 None:intergenic 30.0%
ATACAACCAAAGTTGAAAGA+AGG + tig0031163:13006-13025 Msa1445680:CDS 30.0%
AGAAAGAAATTAGAACCTTG+GGG - tig0031163:13106-13125 None:intergenic 30.0%
ACAATACTAGTTAGCTACAA+TGG + tig0031163:13149-13168 Msa1445680:intron 30.0%
TATAATTCAGGAATTACCGT+TGG + tig0031163:13240-13259 Msa1445680:intron 30.0%
ATGAAGAGAATGTAGACATA+AGG + tig0031163:13506-13525 Msa1445680:CDS 30.0%
ATAAAGAGAGAGCAATTACT+AGG - tig0031163:13656-13675 None:intergenic 30.0%
AGATTGAAAAGGTTTGTGTA+TGG + tig0031163:13725-13744 Msa1445680:three_prime_UTR 30.0%
TTGGAACTGATCATAATATG+TGG + tig0031163:13795-13814 Msa1445680:three_prime_UTR 30.0%
TGGAACTGATCATAATATGT+GGG + tig0031163:13796-13815 Msa1445680:three_prime_UTR 30.0%
CTAAAGTTGTGATTGATTGT+CGG + tig0031163:13942-13961 Msa1445680:three_prime_UTR 30.0%
!! TTCTAAGATGAACTAGCTAG+GGG - tig0031163:12892-12911 None:intergenic 35.0%
TTGGTTGTATTAGAGCTAGA+AGG - tig0031163:12996-13015 None:intergenic 35.0%
TTTAGAGGCAAATGTTGAGA+TGG + tig0031163:13306-13325 Msa1445680:CDS 35.0%
AGATCACGTGAATATTGCTT+AGG + tig0031163:13370-13389 Msa1445680:CDS 35.0%
TACAAATCATTCTCACGTGT+GGG + tig0031163:13440-13459 Msa1445680:CDS 35.0%
TGAATTATCTCCAACCTTAG+AGG - tig0031163:13542-13561 None:intergenic 35.0%
CCAAATTGAAAACAAGATGG+AGG - tig0031163:13686-13705 None:intergenic 35.0%
!!! CCTCCATCTTGTTTTCAATT+TGG + tig0031163:13683-13702 Msa1445680:three_prime_UTR 35.0%
GCTCCAAATTGAAAACAAGA+TGG - tig0031163:13689-13708 None:intergenic 35.0%
AAGTGAGTGAGAGATTGAAA+AGG + tig0031163:13714-13733 Msa1445680:three_prime_UTR 35.0%
ATTTCAAAATCCCACAACTC+AGG - tig0031163:13776-13795 None:intergenic 35.0%
!!! GAGTTGTGGGATTTTGAAAT+TGG + tig0031163:13776-13795 Msa1445680:three_prime_UTR 35.0%
GGAACTGATCATAATATGTG+GGG + tig0031163:13797-13816 Msa1445680:three_prime_UTR 35.0%
!! AATATGTGGGGTTTCTAGTT+AGG + tig0031163:13809-13828 Msa1445680:three_prime_UTR 35.0%
!! TTCTAAGATGAACTAGCTAG+GGG - tig0031163:12892-12911 None:intergenic 35.0%
TTGGTTGTATTAGAGCTAGA+AGG - tig0031163:12996-13015 None:intergenic 35.0%
TTTAGAGGCAAATGTTGAGA+TGG + tig0031163:13306-13325 Msa1445680:CDS 35.0%
AGATCACGTGAATATTGCTT+AGG + tig0031163:13370-13389 Msa1445680:CDS 35.0%
TACAAATCATTCTCACGTGT+GGG + tig0031163:13440-13459 Msa1445680:CDS 35.0%
TGAATTATCTCCAACCTTAG+AGG - tig0031163:13542-13561 None:intergenic 35.0%
CCAAATTGAAAACAAGATGG+AGG - tig0031163:13686-13705 None:intergenic 35.0%
!!! CCTCCATCTTGTTTTCAATT+TGG + tig0031163:13683-13702 Msa1445680:three_prime_UTR 35.0%
GCTCCAAATTGAAAACAAGA+TGG - tig0031163:13689-13708 None:intergenic 35.0%
AAGTGAGTGAGAGATTGAAA+AGG + tig0031163:13714-13733 Msa1445680:three_prime_UTR 35.0%
ATTTCAAAATCCCACAACTC+AGG - tig0031163:13776-13795 None:intergenic 35.0%
!!! GAGTTGTGGGATTTTGAAAT+TGG + tig0031163:13776-13795 Msa1445680:three_prime_UTR 35.0%
GGAACTGATCATAATATGTG+GGG + tig0031163:13797-13816 Msa1445680:three_prime_UTR 35.0%
!! AATATGTGGGGTTTCTAGTT+AGG + tig0031163:13809-13828 Msa1445680:three_prime_UTR 35.0%
AACCAAAGTTGAAAGAAGGC+TGG + tig0031163:13010-13029 Msa1445680:CDS 40.0%
AACCAGCCTTCTTTCAACTT+TGG - tig0031163:13015-13034 None:intergenic 40.0%
GAACCTTGGGGTTATAGTTA+GGG - tig0031163:13094-13113 None:intergenic 40.0%
AGAACCTTGGGGTTATAGTT+AGG - tig0031163:13095-13114 None:intergenic 40.0%
TGGCTAAGGAGAAGAAAGAA+AGG + tig0031163:13326-13345 Msa1445680:CDS 40.0%
CTACAAATCATTCTCACGTG+TGG + tig0031163:13439-13458 Msa1445680:CDS 40.0%
!! AAGGAGTGTCAATTCCTCTA+AGG + tig0031163:13525-13544 Msa1445680:CDS 40.0%
!! AGTGTCAATTCCTCTAAGGT+TGG + tig0031163:13529-13548 Msa1445680:CDS 40.0%
AACCAAAGTTGAAAGAAGGC+TGG + tig0031163:13010-13029 Msa1445680:CDS 40.0%
AACCAGCCTTCTTTCAACTT+TGG - tig0031163:13015-13034 None:intergenic 40.0%
GAACCTTGGGGTTATAGTTA+GGG - tig0031163:13094-13113 None:intergenic 40.0%
AGAACCTTGGGGTTATAGTT+AGG - tig0031163:13095-13114 None:intergenic 40.0%
TGGCTAAGGAGAAGAAAGAA+AGG + tig0031163:13326-13345 Msa1445680:CDS 40.0%
CTACAAATCATTCTCACGTG+TGG + tig0031163:13439-13458 Msa1445680:CDS 40.0%
!! AAGGAGTGTCAATTCCTCTA+AGG + tig0031163:13525-13544 Msa1445680:CDS 40.0%
!! AGTGTCAATTCCTCTAAGGT+TGG + tig0031163:13529-13548 Msa1445680:CDS 40.0%
GGGGATATAGCTATGTAGGT+AGG - tig0031163:12873-12892 None:intergenic 45.0%
GCTAGGGGATATAGCTATGT+AGG - tig0031163:12877-12896 None:intergenic 45.0%
! GAGAGTTGAGTTTGGAGTAG+AGG - tig0031163:13067-13086 None:intergenic 45.0%
AGGGAGAAGAGAGTTGAGTT+TGG - tig0031163:13075-13094 None:intergenic 45.0%
TCTCCCTAACTATAACCCCA+AGG + tig0031163:13088-13107 Msa1445680:CDS 45.0%
ATCGCCTCATCTACTTGATC+CGG - tig0031163:13271-13290 None:intergenic 45.0%
GGCAAATGTTGAGATGGCTA+AGG + tig0031163:13312-13331 Msa1445680:CDS 45.0%
CCTCAGCATGAACAACATGA+AGG - tig0031163:13567-13586 None:intergenic 45.0%
CCTTCATGTTGTTCATGCTG+AGG + tig0031163:13564-13583 Msa1445680:CDS 45.0%
GTATGGATCTTCCAGTGATG+TGG + tig0031163:13742-13761 Msa1445680:three_prime_UTR 45.0%
AGGCTGTATTTCCACATCAC+TGG - tig0031163:13756-13775 None:intergenic 45.0%
TGGAAATACAGCCTGAGTTG+TGG + tig0031163:13762-13781 Msa1445680:three_prime_UTR 45.0%
GGAAATACAGCCTGAGTTGT+GGG + tig0031163:13763-13782 Msa1445680:three_prime_UTR 45.0%
GGGGATATAGCTATGTAGGT+AGG - tig0031163:12873-12892 None:intergenic 45.0%
GCTAGGGGATATAGCTATGT+AGG - tig0031163:12877-12896 None:intergenic 45.0%
! GAGAGTTGAGTTTGGAGTAG+AGG - tig0031163:13067-13086 None:intergenic 45.0%
AGGGAGAAGAGAGTTGAGTT+TGG - tig0031163:13075-13094 None:intergenic 45.0%
TCTCCCTAACTATAACCCCA+AGG + tig0031163:13088-13107 Msa1445680:CDS 45.0%
ATCGCCTCATCTACTTGATC+CGG - tig0031163:13271-13290 None:intergenic 45.0%
GGCAAATGTTGAGATGGCTA+AGG + tig0031163:13312-13331 Msa1445680:CDS 45.0%
CCTCAGCATGAACAACATGA+AGG - tig0031163:13567-13586 None:intergenic 45.0%
CCTTCATGTTGTTCATGCTG+AGG + tig0031163:13564-13583 Msa1445680:CDS 45.0%
GTATGGATCTTCCAGTGATG+TGG + tig0031163:13742-13761 Msa1445680:three_prime_UTR 45.0%
AGGCTGTATTTCCACATCAC+TGG - tig0031163:13756-13775 None:intergenic 45.0%
TGGAAATACAGCCTGAGTTG+TGG + tig0031163:13762-13781 Msa1445680:three_prime_UTR 45.0%
GGAAATACAGCCTGAGTTGT+GGG + tig0031163:13763-13782 Msa1445680:three_prime_UTR 45.0%
GCTACCGGATCAAGTAGATG+AGG + tig0031163:13264-13283 Msa1445680:CDS 50.0%
GCTACCGGATCAAGTAGATG+AGG + tig0031163:13264-13283 Msa1445680:CDS 50.0%
GGAATTACCGTTGGCGCTAC+CGG + tig0031163:13249-13268 Msa1445680:intron 55.0%
ACTTGATCCGGTAGCGCCAA+CGG - tig0031163:13259-13278 None:intergenic 55.0%
GGAATTACCGTTGGCGCTAC+CGG + tig0031163:13249-13268 Msa1445680:intron 55.0%
ACTTGATCCGGTAGCGCCAA+CGG - tig0031163:13259-13278 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
tig0031163 gene 12852 14063 12852 ID=Msa1445680;Name=Msa1445680
tig0031163 mRNA 12852 14063 12852 ID=Msa1445680-mRNA-1;Parent=Msa1445680;Name=Msa1445680-mRNA-1;_AED=0.03;_eAED=0.03;_QI=117|1|1|1|1|1|2|466|162
tig0031163 exon 12852 13109 12852 ID=Msa1445680-mRNA-1:exon:15092;Parent=Msa1445680-mRNA-1
tig0031163 exon 13250 14063 13250 ID=Msa1445680-mRNA-1:exon:15093;Parent=Msa1445680-mRNA-1
tig0031163 five_prime_UTR 12852 12968 12852 ID=Msa1445680-mRNA-1:five_prime_utr;Parent=Msa1445680-mRNA-1
tig0031163 CDS 12969 13109 12969 ID=Msa1445680-mRNA-1:cds;Parent=Msa1445680-mRNA-1
tig0031163 CDS 13250 13597 13250 ID=Msa1445680-mRNA-1:cds;Parent=Msa1445680-mRNA-1
tig0031163 three_prime_UTR 13598 14063 13598 ID=Msa1445680-mRNA-1:three_prime_utr;Parent=Msa1445680-mRNA-1
Gene Sequence

>Msa1445680

ATGGATCAAATTGGAAGTGATCAACCTTCTAGCTCTAATACAACCAAAGTTGAAAGAAGGCTGGTTGAGAAAAACAGAAGAAATCAGATGAAGATCCTCTACTCCAAACTCAACTCTCTTCTCCCTAACTATAACCCCAAGGAATTACCGTTGGCGCTACCGGATCAAGTAGATGAGGCGATAAACTACATAAAAAGTTTAGAGGCAAATGTTGAGATGGCTAAGGAGAAGAAAGAAAGGTTATTAGCAGTAAAGAAGAAAAGATCACGTGAATATTGCTTAGGTCTACCAAAATCACCATGTTTTGAAATTCAAGAAATTGGTTCTTCTCTACAAATCATTCTCACGTGTGGGTTTGATAACCAATTCATTTTCTATGAAATCATTCGTGTGTTACATGAAGAGAATGTAGACATAAGGAGTGTCAATTCCTCTAAGGTTGGAGATAATTCACTCCTTCATGTTGTTCATGCTGAGGTATATATCTAA
Protein sequence

>Msa1445680

MDQIGSDQPSSSNTTKVERRLVEKNRRNQMKILYSKLNSLLPNYNPKELPLALPDQVDEAINYIKSLEANVEMAKEKKERLLAVKKKRSREYCLGLPKSPCFEIQEIGSSLQIILTCGFDNQFIFYEIIRVLHEENVDIRSVNSSKVGDNSLLHVVHAEVYI*