AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0693350

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0693350 MtrunA17_Chr4g0043731 92.573 579 15 3 1 551 1 579 0.0 1061
Msa0693350 MtrunA17_Chr4g0028601 59.292 565 194 5 6 542 19 575 0.0 640
Msa0693350 MtrunA17_Chr1g0152141 45.273 550 265 9 18 534 25 571 2.90e-151 446
Msa0693350 MtrunA17_Chr1g0152151 45.091 550 266 9 18 534 25 571 7.45e-151 445
Msa0693350 MtrunA17_Chr1g0196751 40.108 556 291 10 18 534 3 555 5.13e-120 365
Msa0693350 MtrunA17_Chr1g0196761 37.895 570 313 9 18 549 3 569 3.14e-119 363
Msa0693350 MtrunA17_Chr5g0421251 40.514 506 262 11 13 483 8 509 2.68e-113 346
Msa0693350 MtrunA17_Chr8g0342341 36.567 536 305 8 42 544 36 569 3.34e-105 327
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0693350 AT5G18820.1 66.084 572 161 6 11 549 1 572 0.0 733
Msa0693350 AT2G28000.1 60.149 537 185 4 27 534 33 569 0.0 625
Msa0693350 AT5G18820.2 67.742 465 121 4 114 549 2 466 0.0 617
Msa0693350 AT5G18820.3 63.570 409 120 4 11 390 1 409 1.25e-172 496
Msa0693350 AT1G55490.5 44.821 560 271 12 19 545 35 589 1.10e-149 443
Msa0693350 AT1G55490.1 44.821 560 271 12 19 545 35 589 1.10e-149 443
Msa0693350 AT1G55490.3 44.821 560 271 12 19 545 35 589 1.10e-149 443
Msa0693350 AT1G55490.4 44.821 560 271 12 19 545 35 589 1.10e-149 443
Msa0693350 AT1G55490.2 44.821 560 271 12 19 545 35 589 1.10e-149 443
Msa0693350 AT3G13470.1 44.872 546 260 9 28 534 33 576 1.08e-148 440
Msa0693350 AT5G56500.2 45.656 541 259 9 27 534 38 576 3.38e-148 439
Msa0693350 AT5G56500.1 45.656 541 259 9 27 534 38 576 3.38e-148 439
Msa0693350 AT1G26230.1 40.143 558 291 13 33 551 30 583 3.05e-128 388
Msa0693350 AT1G26230.4 40.150 533 280 11 54 551 3 531 4.20e-124 376
Msa0693350 AT1G26230.3 40.304 526 275 11 61 551 2 523 7.21e-123 372
Msa0693350 AT3G23990.1 39.247 558 292 11 18 534 3 554 7.27e-118 360
Msa0693350 AT2G33210.1 39.354 526 285 8 40 534 33 555 1.44e-113 349
Msa0693350 AT2G33210.2 38.973 526 282 9 40 534 33 550 2.33e-110 341
Msa0693350 AT1G26230.2 40.456 482 249 10 33 479 30 508 2.38e-110 340
Msa0693350 AT3G13860.1 39.292 537 291 8 40 544 32 565 5.56e-109 337
Msa0693350 AT1G26230.5 40.482 415 209 10 33 412 30 441 4.48e-92 290

Find 163 sgRNAs with CRISPR-Local

Find 481 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACCGAAGGATATCTTCTT+AGG 0.160179 4_4:-62243731 None:intergenic
GGATTATCAGCAGTTGATTT+TGG 0.163502 4_4:+62244842 Msa0693350:CDS
ATCTTCCATGGAGTTCTTTA+TGG 0.165963 4_4:-62248197 None:intergenic
TACCAGCACTGCAATTATTT+TGG 0.200241 4_4:+62244799 Msa0693350:CDS
GTCAATAATAAACTCCAATT+TGG 0.200546 4_4:+62250181 Msa0693350:three_prime_UTR
AAATATAGTTGTTGCATTAC+TGG 0.223714 4_4:-62246634 None:intergenic
AATGTTATTCTTTCTGAATC+TGG 0.232870 4_4:+62244543 Msa0693350:CDS
ATTCCCTTCTTCAGAGAAAT+AGG 0.235778 4_4:-62244872 None:intergenic
TATAAAATGAATCGATAAAA+TGG 0.237331 4_4:-62250106 None:intergenic
TCTAACTACTCAAGCTATAT+TGG 0.244652 4_4:+62249794 Msa0693350:CDS
AGGATTGGCGGTATCCAATT+TGG 0.246100 4_4:+62243497 Msa0693350:five_prime_UTR
AGGAACAAGTCCCTCATTTA+TGG 0.247557 4_4:-62248131 None:intergenic
TTAAACTCTGCTTCAAAATC+AGG 0.260234 4_4:+62250388 Msa0693350:three_prime_UTR
TGCCACATATGTCCACCTTT+TGG 0.268341 4_4:+62248162 Msa0693350:CDS
CGGTTGCTGTTTCTTACTCT+TGG 0.295088 4_4:+62249993 Msa0693350:three_prime_UTR
GTTTGACAATGCTAAAGTTT+TGG 0.318990 4_4:+62245780 Msa0693350:CDS
GGTTGCTGTTTCTTACTCTT+GGG 0.329280 4_4:+62249994 Msa0693350:three_prime_UTR
TCATCTCTCAAACTCCAAAT+TGG 0.333353 4_4:-62243511 None:intergenic
AATTGCATTGGAAAGCTCTA+TGG 0.340340 4_4:-62244607 None:intergenic
CAAAGAAATAGTTCCTTTGC+TGG 0.343686 4_4:+62245828 Msa0693350:CDS
GCTCGCGCTATGATTAAATC+TGG 0.360799 4_4:+62244821 Msa0693350:CDS
TGAATTTCAGCCTTAGTGTT+TGG 0.363338 4_4:-62246663 None:intergenic
CCATTGGGTTGATTAGTACT+TGG 0.365452 4_4:+62249934 Msa0693350:three_prime_UTR
ATAAATGAGGGACTTGTTCC+TGG 0.377624 4_4:+62248133 Msa0693350:CDS
TTCTTTCCATCTCCGAGTCC+TGG 0.378180 4_4:-62245973 None:intergenic
ATATGATCCCTTCCTTCAAC+AGG 0.380233 4_4:-62244944 None:intergenic
ATAGGGAGTTGAATAGTGTT+AGG 0.390313 4_4:+62250074 Msa0693350:three_prime_UTR
AAACACTAAGGCTGAAATTC+AGG 0.392021 4_4:+62246665 Msa0693350:CDS
ACACACTTAAGCATCCAAAT+TGG 0.392632 4_4:-62250195 None:intergenic
GTGTGTAGACCGGGAACTAT+TGG 0.396418 4_4:-62250305 None:intergenic
CAAAGTGCAGTCTCCATTGC+TGG 0.397455 4_4:+62249765 Msa0693350:CDS
GGAAAAGACAGTAAAAGATT+TGG 0.397877 4_4:+62244895 Msa0693350:CDS
TCCTGGTTGGTGATGAAGTA+AGG 0.397913 4_4:-62245742 None:intergenic
TTCCTATGCTTCGTGATACA+TGG 0.398814 4_4:-62250029 None:intergenic
TTATTGACAATATCAGATAT+AGG 0.399438 4_4:-62250166 None:intergenic
TAACATCTCCCAATAGTTCC+CGG 0.410003 4_4:+62250296 Msa0693350:three_prime_UTR
ATATTCACACTGTCAGTGTC+AGG 0.411119 4_4:-62243464 None:intergenic
ATAGAGAAGATTGGATTTGA+TGG 0.411296 4_4:+62245124 Msa0693350:CDS
TGCAAGTAAAATGAATGATT+TGG 0.415477 4_4:+62244766 Msa0693350:CDS
GGATAGAAAGCTGAGGATTG+AGG 0.422156 4_4:+62248084 Msa0693350:CDS
TGTGTAGACCGGGAACTATT+GGG 0.428020 4_4:-62250304 None:intergenic
TTATTTCTGTACAGATTGAC+AGG 0.431467 4_4:+62245707 Msa0693350:intron
ACTTACTGAAAATGAAGAAA+TGG 0.435628 4_4:-62243591 None:intergenic
TAGGAATTTCAAAGTTACAT+AGG 0.439340 4_4:+62250056 Msa0693350:three_prime_UTR
GATTTGGGTCTTACACTTGA+AGG 0.439787 4_4:+62246567 Msa0693350:CDS
GCAGCTAATGCTGGAGTTGA+TGG 0.441043 4_4:+62249615 Msa0693350:CDS
CACGAAGCATAGGAACAATT+AGG 0.441243 4_4:+62250037 Msa0693350:three_prime_UTR
TCGGAGAAACCCACAATTTG+TGG 0.444262 4_4:+62243697 Msa0693350:CDS
AAGAGAAGTATTCCTGTTGA+AGG 0.446858 4_4:+62244932 Msa0693350:CDS
GCTGAAGCTATAGAGAAGAT+TGG 0.448331 4_4:+62245115 Msa0693350:CDS
TACCGAAGGATATCTTCTTA+GGG 0.449201 4_4:-62243730 None:intergenic
GCCATGACATATTCTTATAT+AGG 0.450094 4_4:+62250349 Msa0693350:three_prime_UTR
AGGAATTTCAAAGTTACATA+GGG 0.460488 4_4:+62250057 Msa0693350:three_prime_UTR
AAATCAATTGCAGCTAATGC+TGG 0.460888 4_4:+62249606 Msa0693350:CDS
TCCATGGAGTTCTTTATGGC+AGG 0.461420 4_4:-62248193 None:intergenic
ATTCGATGATGAATGTCCAT+TGG 0.461738 4_4:+62249918 Msa0693350:three_prime_UTR
AAATCCTATTTCTCTGAAGA+AGG 0.464428 4_4:+62244868 Msa0693350:CDS
AACAAGAATGCTCTTATGAA+TGG 0.468016 4_4:+62249962 Msa0693350:three_prime_UTR
CATTGGGTTGATTAGTACTT+GGG 0.476943 4_4:+62249935 Msa0693350:three_prime_UTR
ATGTCATGGCCTCAAGGAAA+AGG 0.476952 4_4:-62250336 None:intergenic
TATCCTTCGGTAAAGAATGT+AGG 0.478572 4_4:+62243741 Msa0693350:CDS
AACCAAGCCACGTGTACCTC+TGG 0.480505 4_4:+62249833 Msa0693350:CDS
AGCCAAAATAATTGCAGTGC+TGG 0.482530 4_4:-62244801 None:intergenic
TTCGATGATGAATGTCCATT+GGG 0.482674 4_4:+62249919 Msa0693350:three_prime_UTR
CAAGATATTGCGCTCATGAC+GGG 0.483938 4_4:+62246006 Msa0693350:CDS
TAGAGAAGATTGGATTTGAT+GGG 0.484021 4_4:+62245125 Msa0693350:CDS
CTTGCCCGTACCACAAATTG+TGG 0.487851 4_4:-62243707 None:intergenic
TAGACCATGCATCTAAGAAA+AGG 0.489392 4_4:-62250420 None:intergenic
TTAGCTGCAATTGATTTAGC+AGG 0.491114 4_4:-62249600 None:intergenic
ATCGGATACAATGCCATGAC+TGG 0.491599 4_4:+62249678 Msa0693350:CDS
GTAGGGATAATTTACAAGTC+GGG 0.491627 4_4:+62243759 Msa0693350:CDS
AGAACATTTGACTGGAGAAT+CGG 0.495354 4_4:+62249660 Msa0693350:CDS
GAGAGAATTGCGAAACTCAC+TGG 0.501133 4_4:+62246756 Msa0693350:CDS
GCTGTAGCCTCGATTTCTGC+TGG 0.501335 4_4:+62245064 Msa0693350:intron
GACCAGAGGTACACGTGGCT+TGG 0.502210 4_4:-62249835 None:intergenic
TCTCTGAGAGCTTTCTCGAA+TGG 0.502708 4_4:-62246737 None:intergenic
TGCAGTCTCCATTGCTGGCG+TGG 0.511163 4_4:+62249770 Msa0693350:CDS
ATCCCTACATTCTTTACCGA+AGG 0.511173 4_4:-62243744 None:intergenic
CTTTCATTGCAGTACCAAGC+TGG 0.512828 4_4:-62246602 None:intergenic
GAGGTACTGAAATCTATTGA+AGG 0.514775 4_4:+62250270 Msa0693350:three_prime_UTR
ACCAGCATTCTCAATTGCAT+TGG 0.517330 4_4:-62244619 None:intergenic
GAGGGACTTGTTCCTGGAGG+GGG 0.523820 4_4:+62248139 Msa0693350:CDS
ATCCTTCGGTAAAGAATGTA+GGG 0.525656 4_4:+62243742 Msa0693350:CDS
AAACCCACAATTTGTGGTAC+GGG 0.527359 4_4:+62243703 Msa0693350:CDS
GATGCTGTCTCTCTTACCGT+TGG 0.529324 4_4:+62243797 Msa0693350:CDS
TCCAATGCAATTGAGAATGC+TGG 0.529349 4_4:+62244618 Msa0693350:CDS
TCCTATGCTTCGTGATACAT+GGG 0.533265 4_4:-62250028 None:intergenic
GGATAGACCAGTGTGTAGAC+CGG 0.534412 4_4:-62250315 None:intergenic
GTGCTCATCTAGATCTTCCA+TGG 0.539015 4_4:-62248209 None:intergenic
ATGAGGGACTTGTTCCTGGA+GGG 0.540906 4_4:+62248137 Msa0693350:CDS
GAAATGGAAGAGAATCGATT+GGG 0.541457 4_4:-62243575 None:intergenic
TTGCCCGTACCACAAATTGT+GGG 0.542333 4_4:-62243706 None:intergenic
GCACATCTTGCAACTCGACT+AGG 0.544259 4_4:-62249738 None:intergenic
AAATGTCCAGGACTCGGAGA+TGG 0.545018 4_4:+62245967 Msa0693350:CDS
AGAAATGGAAGAGAATCGAT+TGG 0.545606 4_4:-62243576 None:intergenic
GAAGTATTCCTGTTGAAGGA+AGG 0.546321 4_4:+62244936 Msa0693350:CDS
AAGAATATGTCATGGCCTCA+AGG 0.546839 4_4:-62250342 None:intergenic
AGTTAGAACCACGCCAGCAA+TGG 0.548761 4_4:-62249778 None:intergenic
GTTGCTGTTTCTTACTCTTG+GGG 0.550639 4_4:+62249995 Msa0693350:three_prime_UTR
AGCCCTAAGAAGATATCCTT+CGG 0.551250 4_4:+62243728 Msa0693350:CDS
GAAACCCACAATTTGTGGTA+CGG 0.551523 4_4:+62243702 Msa0693350:CDS
TGCTCCGCTCTTAATTATTG+CGG 0.552174 4_4:+62245870 Msa0693350:CDS
GCTGTAAAATGTCCAGGACT+CGG 0.553014 4_4:+62245961 Msa0693350:CDS
GTGTTAACCTTTGGGTCCAA+CGG 0.553155 4_4:-62243813 None:intergenic
TCAGTACCTCGAGATATTAG+CGG 0.553555 4_4:-62250257 None:intergenic
GGACGTCACTGCACAAGTGT+TGG 0.553988 4_4:+62245894 Msa0693350:CDS
CCACGTGTACCTCTGGTCCC+TGG 0.554763 4_4:+62249840 Msa0693350:CDS
TGGCAGGTATCAAGTCCAAA+AGG 0.555888 4_4:-62248177 None:intergenic
GTTGCAGCTGTAAAATGTCC+AGG 0.557223 4_4:+62245955 Msa0693350:CDS
AGAAGACTAGAACATTTGAC+TGG 0.559546 4_4:+62249652 Msa0693350:CDS
TATTTCTCTGAAGAAGGGAA+TGG 0.563382 4_4:+62244874 Msa0693350:CDS
ACAAGATATTGCGCTCATGA+CGG 0.567682 4_4:+62246005 Msa0693350:CDS
GTCCAAAAGGTGGACATATG+TGG 0.568776 4_4:-62248164 None:intergenic
ATTTGCTGATCCAAACACTA+AGG 0.569532 4_4:+62246653 Msa0693350:CDS
TCTCTTACCGTTGGACCCAA+AGG 0.570187 4_4:+62243806 Msa0693350:CDS
AAGTATTCCTGTTGAAGGAA+GGG 0.570813 4_4:+62244937 Msa0693350:CDS
TGGAAGAGAATCGATTGGGA+GGG 0.573087 4_4:-62243571 None:intergenic
TGTAGGGATAATTTACAAGT+CGG 0.573292 4_4:+62243758 Msa0693350:CDS
TACCTCGAGATATTAGCGGC+TGG 0.574386 4_4:-62250253 None:intergenic
ATCTTCATATGTGCCAGTCA+TGG 0.575331 4_4:-62249691 None:intergenic
AGTAAAATGAATGATTTGGC+TGG 0.577859 4_4:+62244770 Msa0693350:CDS
ATGGAAGAGAATCGATTGGG+AGG 0.578118 4_4:-62243572 None:intergenic
AATCCTATTTCTCTGAAGAA+GGG 0.583638 4_4:+62244869 Msa0693350:CDS
ATGAATGATTTGGCTGGTGA+TGG 0.584689 4_4:+62244776 Msa0693350:CDS
GTCGACCTCTTGAATTAGCA+TGG 0.586694 4_4:-62244643 None:intergenic
ACCTGCCATAAAGAACTCCA+TGG 0.595150 4_4:+62248192 Msa0693350:CDS
AAACTTAAAGTAATAAATGA+CGG 0.601769 4_4:+62244567 Msa0693350:CDS
GCTTAAGTGTGTCAGTGCCA+TGG 0.606118 4_4:+62250206 Msa0693350:three_prime_UTR
TGAGGGACTTGTTCCTGGAG+GGG 0.606887 4_4:+62248138 Msa0693350:CDS
GAAGGAAGGGATCATATCAA+AGG 0.607458 4_4:+62244950 Msa0693350:CDS
TCCGCTCTTAATTATTGCGG+AGG 0.608855 4_4:+62245873 Msa0693350:CDS
TCCTTACTTCATCACCAACC+AGG 0.611481 4_4:+62245741 Msa0693350:CDS
ACCTATATAAGAATATGTCA+TGG 0.613214 4_4:-62250350 None:intergenic
TATTCACACTGTCAGTGTCA+GGG 0.618056 4_4:-62243463 None:intergenic
GATAGACCAGTGTGTAGACC+GGG 0.618597 4_4:-62250314 None:intergenic
TGGTGCTGATATTGTGGCGA+AGG 0.622265 4_4:+62248234 Msa0693350:CDS
TTAATAGTGAACAAAATGCA+AGG 0.624427 4_4:+62245922 Msa0693350:CDS
ACACACTGAGCTAGAACTTG+AGG 0.625418 4_4:+62248063 Msa0693350:CDS
AGAGAAGATTGGATTTGATG+GGG 0.625525 4_4:+62245126 Msa0693350:CDS
AGCATTGTCAAACTCCACAA+TGG 0.627191 4_4:-62245770 None:intergenic
TATTTCTGTACAGATTGACA+GGG 0.629984 4_4:+62245708 Msa0693350:intron
GTCATTTCCAGCAGAAATCG+AGG 0.631622 4_4:-62245071 None:intergenic
TGGTGCCATGCTAATTCAAG+AGG 0.633716 4_4:+62244638 Msa0693350:CDS
GCACATTGGTGCTGATATTG+TGG 0.635796 4_4:+62248228 Msa0693350:CDS
ATAGTTCCCGGTCTACACAC+TGG 0.636775 4_4:+62250308 Msa0693350:three_prime_UTR
TCTTATGAATGGAAAAGTCA+CGG 0.641737 4_4:+62249973 Msa0693350:three_prime_UTR
GCTGGAAATGACGAGTATGT+TGG 0.642275 4_4:+62245082 Msa0693350:CDS
GGTACAACATCAGACCAGCT+TGG 0.642489 4_4:+62246588 Msa0693350:CDS
AAGAAGAAGAGAGATGTGTG+AGG 0.643412 4_4:-62243548 None:intergenic
ACCCATGTATCACGAAGCAT+AGG 0.644738 4_4:+62250027 Msa0693350:three_prime_UTR
GTGAATGAATGTATTTGTAA+CGG 0.645566 4_4:-62243438 None:intergenic
AGCCAGCCGCTAATATCTCG+AGG 0.658424 4_4:+62250251 Msa0693350:three_prime_UTR
CCAAGTACTAATCAACCCAA+TGG 0.670646 4_4:-62249934 None:intergenic
CAGGTATCAAGTCCAAAAGG+TGG 0.673351 4_4:-62248174 None:intergenic
GAAGATCTAGATGAGCACAT+TGG 0.675355 4_4:+62248214 Msa0693350:CDS
GGAGTTATACCAGGGACCAG+AGG 0.684313 4_4:-62249849 None:intergenic
ATTTCTGTACAGATTGACAG+GGG 0.693379 4_4:+62245709 Msa0693350:intron
TCCTCCGCAATAATTAAGAG+CGG 0.695220 4_4:-62245874 None:intergenic
CCAGGGACCAGAGGTACACG+TGG 0.705754 4_4:-62249840 None:intergenic
GTATTTGTAACGGACTACAG+TGG 0.706094 4_4:-62243428 None:intergenic
AATGAGGGACTTGTTCCTGG+AGG 0.707403 4_4:+62248136 Msa0693350:CDS
AACTTGAGGATAGAAAGCTG+AGG 0.724054 4_4:+62248077 Msa0693350:CDS
AGAATTGCGAAACTCACTGG+CGG 0.733428 4_4:+62246759 Msa0693350:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTATGATGATAATAATT+AGG + chr4_4:62245212-62245231 Msa0693350:intron 10.0%
!! ATTTATGATGATAATAATTA+GGG + chr4_4:62245213-62245232 Msa0693350:intron 10.0%
!! AAAAAATTGCTATATTTATA+GGG - chr4_4:62245256-62245275 None:intergenic 10.0%
!! TAAAAAATTGCTATATTTAT+AGG - chr4_4:62245257-62245276 None:intergenic 10.0%
!!! ACATTTCATTTTATTTTTTA+GGG - chr4_4:62245287-62245306 None:intergenic 10.0%
!!! AACATTTCATTTTATTTTTT+AGG - chr4_4:62245288-62245307 None:intergenic 10.0%
!!! AATTTTTTTTGTTTTAGTTT+TGG + chr4_4:62245319-62245338 Msa0693350:intron 10.0%
!! AACATAATATGAATATATAA+AGG + chr4_4:62245384-62245403 Msa0693350:intron 10.0%
!!! CAAAAAAATTATTTTGTTTT+TGG - chr4_4:62245504-62245523 None:intergenic 10.0%
!!! AACAAAATAATTTTTTTGTA+AGG + chr4_4:62245506-62245525 Msa0693350:intron 10.0%
!!! AACATTCTATTTTATTTTTT+AGG + chr4_4:62245534-62245553 Msa0693350:intron 10.0%
!!! ACATTCTATTTTATTTTTTA+GGG + chr4_4:62245535-62245554 Msa0693350:intron 10.0%
!! AACTATTATTAGAATTATTA+GGG - chr4_4:62245609-62245628 None:intergenic 10.0%
!!! AATTATTTTAATAAAGTCTA+TGG + chr4_4:62246110-62246129 Msa0693350:intron 10.0%
!!! ATTTTATTAATTTTAGTTTC+TGG + chr4_4:62249424-62249443 Msa0693350:intron 10.0%
!! AAACTTAAAGTAATAAATGA+CGG + chr4_4:62244567-62244586 Msa0693350:CDS 15.0%
!! CAAAATTTGGTATATTTATA+AGG + chr4_4:62245566-62245585 Msa0693350:intron 15.0%
!! GAACTATTATTAGAATTATT+AGG - chr4_4:62245610-62245629 None:intergenic 15.0%
!! AAATGTTAAATGAAAACAAA+AGG - chr4_4:62246190-62246209 None:intergenic 15.0%
!!! TTTCATTTAACATTTTTAGT+TGG + chr4_4:62246195-62246214 Msa0693350:intron 15.0%
!!! TTGAATTTTGTTGTTTTATA+TGG + chr4_4:62246362-62246381 Msa0693350:intron 15.0%
!! ATAAGTTATGATATAACAAT+AGG + chr4_4:62247651-62247670 Msa0693350:intron 15.0%
!!! TTTAGTAATTTATTTGCTTT+TGG - chr4_4:62247832-62247851 None:intergenic 15.0%
!!! ACAATAATTTTTTTTGAAGA+AGG - chr4_4:62248476-62248495 None:intergenic 15.0%
!!! AAATTGTTTTCTCTATTTTA+GGG - chr4_4:62249873-62249892 None:intergenic 15.0%
!! TATAAAATGAATCGATAAAA+TGG - chr4_4:62250109-62250128 None:intergenic 15.0%
!!! CTTTTACAAATTTATCATTT+AGG - chr4_4:62250456-62250475 None:intergenic 15.0%
!! AATTGAATAGAAGAAGAATT+AGG - chr4_4:62243841-62243860 None:intergenic 20.0%
!! CTGAAAATAACTTATGAATA+TGG + chr4_4:62244086-62244105 Msa0693350:intron 20.0%
!!! TCAAACATATAATTGTTGTT+TGG - chr4_4:62244409-62244428 None:intergenic 20.0%
!!! ATTTTCATCCATTTAATCTA+AGG - chr4_4:62244687-62244706 None:intergenic 20.0%
!! TGTCAAAATTATATCCATTA+GGG - chr4_4:62245346-62245365 None:intergenic 20.0%
!! ATGTCAAAATTATATCCATT+AGG - chr4_4:62245347-62245366 None:intergenic 20.0%
!! TAAAGGTTGAACATAATAAA+CGG + chr4_4:62245401-62245420 Msa0693350:intron 20.0%
!!! TAGAATTTTACAGATAAAGA+AGG + chr4_4:62246689-62246708 Msa0693350:CDS 20.0%
!! TGAATTAGATACCTTTATAA+CGG - chr4_4:62246790-62246809 None:intergenic 20.0%
!! AGTATTTCTTACTCTATTTA+AGG + chr4_4:62246883-62246902 Msa0693350:intron 20.0%
!!! AGATTTTATTAATTCAACCA+AGG + chr4_4:62246918-62246937 Msa0693350:intron 20.0%
!! TCTTTCTTATCTATTATTGT+AGG + chr4_4:62247004-62247023 Msa0693350:intron 20.0%
!! CTTTCTTATCTATTATTGTA+GGG + chr4_4:62247005-62247024 Msa0693350:intron 20.0%
!!! AAAATCTAAAACTCAACTAT+AGG + chr4_4:62247174-62247193 Msa0693350:intron 20.0%
!! TTGTGAATGTGAAAAATAAA+TGG - chr4_4:62247534-62247553 None:intergenic 20.0%
!!! TTTATTTTTCACATTCACAA+TGG + chr4_4:62247534-62247553 Msa0693350:intron 20.0%
!! AAAGAAAAAATATTCAGACT+CGG - chr4_4:62248301-62248320 None:intergenic 20.0%
!!! AATTTTTTCATGGAAAGAAA+AGG - chr4_4:62248378-62248397 None:intergenic 20.0%
!!! TTTTCTTTCCATGAAAAAAT+TGG + chr4_4:62248377-62248396 Msa0693350:intron 20.0%
!! TTTCTTTCCATGAAAAAATT+GGG + chr4_4:62248378-62248397 Msa0693350:intron 20.0%
!! AAACATACCTCATTTATTTA+TGG + chr4_4:62248531-62248550 Msa0693350:intron 20.0%
!!! TGTATTTAAGATTTTAACCA+TGG + chr4_4:62248600-62248619 Msa0693350:intron 20.0%
!!! AAACGATAACTACATATTTT+TGG - chr4_4:62249092-62249111 None:intergenic 20.0%
!! AAAAATGACCAACATTTATT+GGG + chr4_4:62249370-62249389 Msa0693350:intron 20.0%
!!! GAAATTGTTTTCTCTATTTT+AGG - chr4_4:62249874-62249893 None:intergenic 20.0%
!! TTATTGACAATATCAGATAT+AGG - chr4_4:62250169-62250188 None:intergenic 20.0%
! GTGAATGAATGTATTTGTAA+CGG - chr4_4:62243441-62243460 None:intergenic 25.0%
! ACTTACTGAAAATGAAGAAA+TGG - chr4_4:62243594-62243613 None:intergenic 25.0%
!! AATTTCTTGCATTTTTGCTA+TGG + chr4_4:62243857-62243876 Msa0693350:intron 25.0%
!!! TTCATAAGTTATTTTCAGCT+TGG - chr4_4:62244084-62244103 None:intergenic 25.0%
! TATAAGTTCTTTCAGATTGT+TGG + chr4_4:62244122-62244141 Msa0693350:intron 25.0%
! TAAAATAAGTCAATCCAAAC+CGG + chr4_4:62244154-62244173 Msa0693350:intron 25.0%
! TTGAACGAAAATTGATCAAA+GGG - chr4_4:62244471-62244490 None:intergenic 25.0%
! AGAGATAAAATAAATGAGCA+CGG - chr4_4:62244508-62244527 None:intergenic 25.0%
!! TATTTTATCTCTTATTACGC+AGG + chr4_4:62244516-62244535 Msa0693350:intron 25.0%
! AATGTTATTCTTTCTGAATC+TGG + chr4_4:62244543-62244562 Msa0693350:CDS 25.0%
!!! TTTTTATTTTTCCTGCTTGT+AGG + chr4_4:62244742-62244761 Msa0693350:intron 25.0%
! TGCAAGTAAAATGAATGATT+TGG + chr4_4:62244766-62244785 Msa0693350:CDS 25.0%
! CTAAAACAAAAAAAATTGCG+AGG - chr4_4:62245316-62245335 None:intergenic 25.0%
! AAAGGTTGAACATAATAAAC+GGG + chr4_4:62245402-62245421 Msa0693350:intron 25.0%
! ACATTCAGATGAACATAAAT+TGG + chr4_4:62245468-62245487 Msa0693350:intron 25.0%
! TGAACATAAATTGGTCATTA+AGG + chr4_4:62245477-62245496 Msa0693350:intron 25.0%
! TAGGGACTAAAATCAAAATT+TGG + chr4_4:62245553-62245572 Msa0693350:intron 25.0%
! TTAATAGTGAACAAAATGCA+AGG + chr4_4:62245922-62245941 Msa0693350:CDS 25.0%
! AAATATAGTTGTTGCATTAC+TGG - chr4_4:62246637-62246656 None:intergenic 25.0%
!!! TGCAAAACATTTGCTTTTTT+TGG + chr4_4:62247096-62247115 Msa0693350:intron 25.0%
! GTGAAAAATAAATGGAATTG+AGG - chr4_4:62247526-62247545 None:intergenic 25.0%
!! GAAGTGTTTATTAGCTTATT+TGG + chr4_4:62247570-62247589 Msa0693350:intron 25.0%
!! ACCCTAAGATTCAATTTTTA+CGG + chr4_4:62247759-62247778 Msa0693350:intron 25.0%
! ACCGTAAAAATTGAATCTTA+GGG - chr4_4:62247763-62247782 None:intergenic 25.0%
! AAAAAATATGTTGAGAATGC+AGG + chr4_4:62247787-62247806 Msa0693350:intron 25.0%
! TACTAAATTTAAGTGCTTTG+TGG + chr4_4:62247845-62247864 Msa0693350:intron 25.0%
! TGCAATTAAGACATTTGAAA+AGG - chr4_4:62247918-62247937 None:intergenic 25.0%
! AAATTGTTGTGAAGAAACAA+TGG + chr4_4:62247937-62247956 Msa0693350:intron 25.0%
!! TGAAATTTGCATATTTTGCA+AGG + chr4_4:62248415-62248434 Msa0693350:intron 25.0%
! TACAATCAACAAGAAGAATA+AGG - chr4_4:62248850-62248869 None:intergenic 25.0%
! CAAACTGAATTTATATTCCA+GGG - chr4_4:62248998-62249017 None:intergenic 25.0%
!!! TTTTTGGTATTAATGTCACT+CGG - chr4_4:62249076-62249095 None:intergenic 25.0%
! TCTTAATGCAAACTTTAACA+TGG - chr4_4:62249173-62249192 None:intergenic 25.0%
! GAAAAATGACCAACATTTAT+TGG + chr4_4:62249369-62249388 Msa0693350:intron 25.0%
! TAGGAATTTCAAAGTTACAT+AGG + chr4_4:62250056-62250075 Msa0693350:three_prime_UTR 25.0%
! AGGAATTTCAAAGTTACATA+GGG + chr4_4:62250057-62250076 Msa0693350:three_prime_UTR 25.0%
! GTCAATAATAAACTCCAATT+TGG + chr4_4:62250181-62250200 Msa0693350:three_prime_UTR 25.0%
! ACCTATATAAGAATATGTCA+TGG - chr4_4:62250353-62250372 None:intergenic 25.0%
TGTAGGGATAATTTACAAGT+CGG + chr4_4:62243758-62243777 Msa0693350:CDS 30.0%
!! ATTAGGAAGTGTTAACCTTT+GGG - chr4_4:62243824-62243843 None:intergenic 30.0%
!! AATTAGGAAGTGTTAACCTT+TGG - chr4_4:62243825-62243844 None:intergenic 30.0%
!!! TTTGCTATGGTTTGTTTTAC+TGG + chr4_4:62243870-62243889 Msa0693350:intron 30.0%
AAAAGTTGTTTATCCACAGA+GGG - chr4_4:62243971-62243990 None:intergenic 30.0%
AAAAAGTTGTTTATCCACAG+AGG - chr4_4:62243972-62243991 None:intergenic 30.0%
TAGCTTATAGAAACAGCTTA+TGG - chr4_4:62244042-62244061 None:intergenic 30.0%
AATAGGGTGAAAACAGTTTA+TGG - chr4_4:62244286-62244305 None:intergenic 30.0%
GCATATAGCACTTATATGAT+AGG + chr4_4:62244349-62244368 Msa0693350:intron 30.0%
AATTGAATCCCTATACTGTA+TGG + chr4_4:62244445-62244464 Msa0693350:intron 30.0%
GTTGAACGAAAATTGATCAA+AGG - chr4_4:62244472-62244491 None:intergenic 30.0%
AGGTTCTACCTTAGATTAAA+TGG + chr4_4:62244676-62244695 Msa0693350:intron 30.0%
! AGTAAAATGAATGATTTGGC+TGG + chr4_4:62244770-62244789 Msa0693350:CDS 30.0%
!! GATTATCAGCAGTTGATTTT+GGG + chr4_4:62244843-62244862 Msa0693350:CDS 30.0%
!! ATTATCAGCAGTTGATTTTG+GGG + chr4_4:62244844-62244863 Msa0693350:CDS 30.0%
! AAATCCTATTTCTCTGAAGA+AGG + chr4_4:62244868-62244887 Msa0693350:CDS 30.0%
! AATCCTATTTCTCTGAAGAA+GGG + chr4_4:62244869-62244888 Msa0693350:CDS 30.0%
GGAAAAGACAGTAAAAGATT+TGG + chr4_4:62244895-62244914 Msa0693350:CDS 30.0%
ATAGAGAAGATTGGATTTGA+TGG + chr4_4:62245124-62245143 Msa0693350:CDS 30.0%
TAGAGAAGATTGGATTTGAT+GGG + chr4_4:62245125-62245144 Msa0693350:CDS 30.0%
CTATAATAGGGAAAAACACA+GGG - chr4_4:62245677-62245696 None:intergenic 30.0%
AACAGACAACAGCTATAATA+GGG - chr4_4:62245689-62245708 None:intergenic 30.0%
TAACAGACAACAGCTATAAT+AGG - chr4_4:62245690-62245709 None:intergenic 30.0%
!! TTATTTCTGTACAGATTGAC+AGG + chr4_4:62245707-62245726 Msa0693350:intron 30.0%
! TATTTCTGTACAGATTGACA+GGG + chr4_4:62245708-62245727 Msa0693350:intron 30.0%
! GTTTGACAATGCTAAAGTTT+TGG + chr4_4:62245780-62245799 Msa0693350:CDS 30.0%
!! CAATGCTAAAGTTTTGGTAA+CGG + chr4_4:62245786-62245805 Msa0693350:intron 30.0%
AAAATGTAAGCCTAGTATGA+AGG - chr4_4:62246080-62246099 None:intergenic 30.0%
CTGCAAAATAAGCAACTATT+TGG - chr4_4:62246142-62246161 None:intergenic 30.0%
!!! ACATTTTTAGTTGGACAGTA+TGG + chr4_4:62246204-62246223 Msa0693350:intron 30.0%
ACAGTTGAAAAATGAGATGA+TGG - chr4_4:62246253-62246272 None:intergenic 30.0%
! TTTTATATGGTGTAACTGTG+TGG + chr4_4:62246375-62246394 Msa0693350:intron 30.0%
TTTATATGGTGTAACTGTGT+GGG + chr4_4:62246376-62246395 Msa0693350:intron 30.0%
!! AGAAGCAGTTGATAAGTAAA+GGG - chr4_4:62246861-62246880 None:intergenic 30.0%
!! AAGAAGCAGTTGATAAGTAA+AGG - chr4_4:62246862-62246881 None:intergenic 30.0%
TTAGTCATTTGACTAGCAAT+GGG - chr4_4:62246959-62246978 None:intergenic 30.0%
TTTAGTCATTTGACTAGCAA+TGG - chr4_4:62246960-62246979 None:intergenic 30.0%
! AAAAGCAAATGTTTTGCATG+TGG - chr4_4:62247094-62247113 None:intergenic 30.0%
! AAAAGTTCTTTTGCACTAGA+TGG - chr4_4:62247280-62247299 None:intergenic 30.0%
CCAACAAAACCAATAACAAA+GGG - chr4_4:62247363-62247382 None:intergenic 30.0%
TCCAACAAAACCAATAACAA+AGG - chr4_4:62247364-62247383 None:intergenic 30.0%
!!! TTGTTATTGGTTTTGTTGGA+TGG + chr4_4:62247364-62247383 Msa0693350:intron 30.0%
ATAGCCTATACAAGAATCAA+GGG - chr4_4:62247419-62247438 None:intergenic 30.0%
AAAAAACACAATGAGCTACT+TGG - chr4_4:62247450-62247469 None:intergenic 30.0%
AAGCAAGTCATTGTGTTAAA+TGG + chr4_4:62247485-62247504 Msa0693350:intron 30.0%
! ATTTTTCACATTCACAATGG+AGG + chr4_4:62247537-62247556 Msa0693350:intron 30.0%
! TAGTTTTCATAAGCCATCTT+GGG - chr4_4:62247708-62247727 None:intergenic 30.0%
AAATTGAATCTTAGGGTGAT+GGG - chr4_4:62247756-62247775 None:intergenic 30.0%
AAAATTGAATCTTAGGGTGA+TGG - chr4_4:62247757-62247776 None:intergenic 30.0%
CACCGTAAAAATTGAATCTT+AGG - chr4_4:62247764-62247783 None:intergenic 30.0%
GATAGTAGAAAATTCACTAG+AGG - chr4_4:62248336-62248355 None:intergenic 30.0%
AGAAAAGGCAACATAATACA+TGG - chr4_4:62248363-62248382 None:intergenic 30.0%
!!! AAACTCTCCCAATTTTTTCA+TGG - chr4_4:62248388-62248407 None:intergenic 30.0%
CATACCTCATTTATTTATGG+TGG + chr4_4:62248534-62248553 Msa0693350:intron 30.0%
TGTTCCACCATAAATAAATG+AGG - chr4_4:62248541-62248560 None:intergenic 30.0%
AGTCAAAATGTAAGAAACCA+TGG - chr4_4:62248620-62248639 None:intergenic 30.0%
TTTGACTGTACTTCATTGAA+TGG + chr4_4:62248633-62248652 Msa0693350:intron 30.0%
TTGACTGTACTTCATTGAAT+GGG + chr4_4:62248634-62248653 Msa0693350:intron 30.0%
!! GTCTTACTTTGCTATTTCTT+TGG + chr4_4:62248656-62248675 Msa0693350:intron 30.0%
AAAATACTAACGCTTGAGTA+GGG + chr4_4:62248730-62248749 Msa0693350:intron 30.0%
GGTATGAATCAGTTGAATTT+CGG - chr4_4:62248977-62248996 None:intergenic 30.0%
CCAAACTGAATTTATATTCC+AGG - chr4_4:62248999-62249018 None:intergenic 30.0%
CCTGGAATATAAATTCAGTT+TGG + chr4_4:62248996-62249015 Msa0693350:intron 30.0%
AATGCATGAAGCAATGATAT+AGG + chr4_4:62249241-62249260 Msa0693350:intron 30.0%
ATTGAGACTAACTTTGTGAA+AGG + chr4_4:62249497-62249516 Msa0693350:intron 30.0%
! TATGAAGATCTTTTGAATGC+TGG + chr4_4:62249705-62249724 Msa0693350:CDS 30.0%
TCTAACTACTCAAGCTATAT+TGG + chr4_4:62249794-62249813 Msa0693350:CDS 30.0%
!! TATTTTAGGGAGTTATACCA+GGG - chr4_4:62249860-62249879 None:intergenic 30.0%
!!! TTCAGTTTTGAAAACAGAGT+AGG + chr4_4:62249891-62249910 Msa0693350:three_prime_UTR 30.0%
AACAAGAATGCTCTTATGAA+TGG + chr4_4:62249962-62249981 Msa0693350:three_prime_UTR 30.0%
TCTTATGAATGGAAAAGTCA+CGG + chr4_4:62249973-62249992 Msa0693350:three_prime_UTR 30.0%
AAAAAAGAGAGCAAATTCCA+TGG - chr4_4:62250226-62250245 None:intergenic 30.0%
GCCATGACATATTCTTATAT+AGG + chr4_4:62250349-62250368 Msa0693350:three_prime_UTR 30.0%
TTAAACTCTGCTTCAAAATC+AGG + chr4_4:62250388-62250407 Msa0693350:three_prime_UTR 30.0%
! TTATCCTTTTCTTAGATGCA+TGG + chr4_4:62250416-62250435 Msa0693350:three_prime_UTR 30.0%
! CTGACAGTGTGAATATTTTG+CGG + chr4_4:62243471-62243490 Msa0693350:five_prime_UTR 35.0%
! TGACAGTGTGAATATTTTGC+GGG + chr4_4:62243472-62243491 Msa0693350:five_prime_UTR 35.0%
! AATATTTTGCGGGAAAGGAT+TGG + chr4_4:62243482-62243501 Msa0693350:five_prime_UTR 35.0%
TCATCTCTCAAACTCCAAAT+TGG - chr4_4:62243514-62243533 None:intergenic 35.0%
GAAATGGAAGAGAATCGATT+GGG - chr4_4:62243578-62243597 None:intergenic 35.0%
AGAAATGGAAGAGAATCGAT+TGG - chr4_4:62243579-62243598 None:intergenic 35.0%
AATAGTCAGACCAAAATGGA+CGG - chr4_4:62243658-62243677 None:intergenic 35.0%
TACCGAAGGATATCTTCTTA+GGG - chr4_4:62243733-62243752 None:intergenic 35.0%
TTACCGAAGGATATCTTCTT+AGG - chr4_4:62243734-62243753 None:intergenic 35.0%
TATCCTTCGGTAAAGAATGT+AGG + chr4_4:62243741-62243760 Msa0693350:CDS 35.0%
ATCCTTCGGTAAAGAATGTA+GGG + chr4_4:62243742-62243761 Msa0693350:CDS 35.0%
GTAGGGATAATTTACAAGTC+GGG + chr4_4:62243759-62243778 Msa0693350:CDS 35.0%
GGTAAGTGTTTGTTTGGATT+AGG - chr4_4:62243950-62243969 None:intergenic 35.0%
!! GCTGTTTCTATAAGCTATCT+TGG + chr4_4:62244045-62244064 Msa0693350:intron 35.0%
CAAACATGTTGTATGAGTCT+GGG - chr4_4:62244180-62244199 None:intergenic 35.0%
TTATCTCTTATTACGCAGGA+CGG + chr4_4:62244520-62244539 Msa0693350:intron 35.0%
AATTGCATTGGAAAGCTCTA+TGG - chr4_4:62244610-62244629 None:intergenic 35.0%
! TACCAGCACTGCAATTATTT+TGG + chr4_4:62244799-62244818 Msa0693350:CDS 35.0%
!! GGATTATCAGCAGTTGATTT+TGG + chr4_4:62244842-62244861 Msa0693350:CDS 35.0%
ATTCCCTTCTTCAGAGAAAT+AGG - chr4_4:62244875-62244894 None:intergenic 35.0%
! TATTTCTCTGAAGAAGGGAA+TGG + chr4_4:62244874-62244893 Msa0693350:CDS 35.0%
!! AAGAGAAGTATTCCTGTTGA+AGG + chr4_4:62244932-62244951 Msa0693350:CDS 35.0%
AAGTATTCCTGTTGAAGGAA+GGG + chr4_4:62244937-62244956 Msa0693350:CDS 35.0%
TGAAAAACTCAGACAAGCAT+TGG - chr4_4:62244989-62245008 None:intergenic 35.0%
AGAGAAGATTGGATTTGATG+GGG + chr4_4:62245126-62245145 Msa0693350:CDS 35.0%
!!! GTTTTAGTTTTGGTCCCTAA+TGG + chr4_4:62245329-62245348 Msa0693350:intron 35.0%
CATAATAAACGGGCATAACA+TGG + chr4_4:62245412-62245431 Msa0693350:intron 35.0%
GCTATAATAGGGAAAAACAC+AGG - chr4_4:62245678-62245697 None:intergenic 35.0%
ATTTCTGTACAGATTGACAG+GGG + chr4_4:62245709-62245728 Msa0693350:intron 35.0%
CAAAGAAATAGTTCCTTTGC+TGG + chr4_4:62245828-62245847 Msa0693350:CDS 35.0%
CCTACTGCATTTGATAAACT+CGG + chr4_4:62246035-62246054 Msa0693350:intron 35.0%
! AGGCTTACATTTTTCTGTCT+TGG + chr4_4:62246087-62246106 Msa0693350:intron 35.0%
TGTCAGTTGACTGTTAATAG+AGG + chr4_4:62246322-62246341 Msa0693350:intron 35.0%
TTATATGGTGTAACTGTGTG+GGG + chr4_4:62246377-62246396 Msa0693350:intron 35.0%
GTGATATTAAAGTCAACAGG+AGG - chr4_4:62246525-62246544 None:intergenic 35.0%
CCTGTGATATTAAAGTCAAC+AGG - chr4_4:62246528-62246547 None:intergenic 35.0%
!! CCTGTTGACTTTAATATCAC+AGG + chr4_4:62246525-62246544 Msa0693350:intron 35.0%
TGACTTTAATATCACAGGTG+CGG + chr4_4:62246530-62246549 Msa0693350:intron 35.0%
! GATTTTCTCTGTGGAGATTT+GGG + chr4_4:62246552-62246571 Msa0693350:CDS 35.0%
! ATTTGCTGATCCAAACACTA+AGG + chr4_4:62246653-62246672 Msa0693350:CDS 35.0%
TGAATTTCAGCCTTAGTGTT+TGG - chr4_4:62246666-62246685 None:intergenic 35.0%
AAACACTAAGGCTGAAATTC+AGG + chr4_4:62246665-62246684 Msa0693350:CDS 35.0%
!! AGTTGATAAGTAAAGGGTCA+AGG - chr4_4:62246855-62246874 None:intergenic 35.0%
! GTTCTGAGTTCAATGACATT+GGG + chr4_4:62247027-62247046 Msa0693350:intron 35.0%
! GTGCAAAAGAACTTTTGTTG+TGG + chr4_4:62247284-62247303 Msa0693350:intron 35.0%
! TAACTGTTGCCCTTTGTTAT+TGG + chr4_4:62247351-62247370 Msa0693350:intron 35.0%
!!! CCCTTTGTTATTGGTTTTGT+TGG + chr4_4:62247360-62247379 Msa0693350:intron 35.0%
GTATCCCTTGATTCTTGTAT+AGG + chr4_4:62247412-62247431 Msa0693350:intron 35.0%
CATAGCCTATACAAGAATCA+AGG - chr4_4:62247420-62247439 None:intergenic 35.0%
GTCATTGTGTTAAATGGAAC+TGG + chr4_4:62247491-62247510 Msa0693350:intron 35.0%
TTGTGTTAAATGGAACTGGA+TGG + chr4_4:62247495-62247514 Msa0693350:intron 35.0%
ACATTCACAATGGAGGAATT+TGG + chr4_4:62247544-62247563 Msa0693350:intron 35.0%
ATTTAATAAACCCCCCAAGA+TGG + chr4_4:62247692-62247711 Msa0693350:intron 35.0%
! AGTTTTCATAAGCCATCTTG+GGG - chr4_4:62247707-62247726 None:intergenic 35.0%
! GTAGTTTTCATAAGCCATCT+TGG - chr4_4:62247709-62247728 None:intergenic 35.0%
GATGCATTTACCAATTGTGT+AGG + chr4_4:62248033-62248052 Msa0693350:intron 35.0%
CATTTACCAATTGTGTAGGT+AGG + chr4_4:62248037-62248056 Msa0693350:intron 35.0%
! TACTTTTGCTGCCATAAATG+AGG + chr4_4:62248120-62248139 Msa0693350:CDS 35.0%
! ACTTTTGCTGCCATAAATGA+GGG + chr4_4:62248121-62248140 Msa0693350:CDS 35.0%
ATCTTCCATGGAGTTCTTTA+TGG - chr4_4:62248200-62248219 None:intergenic 35.0%
AAAATATTCAGACTCGGAGA+GGG - chr4_4:62248295-62248314 None:intergenic 35.0%
AAAAATATTCAGACTCGGAG+AGG - chr4_4:62248296-62248315 None:intergenic 35.0%
GAAAATACTAACGCTTGAGT+AGG + chr4_4:62248729-62248748 Msa0693350:intron 35.0%
AAATACTAACGCTTGAGTAG+GGG + chr4_4:62248731-62248750 Msa0693350:intron 35.0%
AAACAACTGCAGATATGTTG+AGG - chr4_4:62248770-62248789 None:intergenic 35.0%
GTGTGAATCTATTCTATCGA+AGG - chr4_4:62248910-62248929 None:intergenic 35.0%
! AATTCAACTGATTCATACCC+TGG + chr4_4:62248978-62248997 Msa0693350:intron 35.0%
TTATCGTTTGATCCATTTCC+TGG + chr4_4:62249103-62249122 Msa0693350:intron 35.0%
!! TTAAAACCACGGTATTGACA+CGG - chr4_4:62249223-62249242 None:intergenic 35.0%
TGCTTCATGCATTAAAACCA+CGG - chr4_4:62249234-62249253 None:intergenic 35.0%
!!! TGGTCATTTTTCTCTCCTAA+GGG - chr4_4:62249361-62249380 None:intergenic 35.0%
!!! TTGGTCATTTTTCTCTCCTA+AGG - chr4_4:62249362-62249381 None:intergenic 35.0%
TATCTCAGCCCAATAAATGT+TGG - chr4_4:62249381-62249400 None:intergenic 35.0%
ATTGGGCTGAGATATTTGTT+AGG + chr4_4:62249387-62249406 Msa0693350:intron 35.0%
TCAATCCTACAAGAAAAGGA+GGG - chr4_4:62249482-62249501 None:intergenic 35.0%
AGTCTCAATCCTACAAGAAA+AGG - chr4_4:62249486-62249505 None:intergenic 35.0%
! TTAGCTGCAATTGATTTAGC+AGG - chr4_4:62249603-62249622 None:intergenic 35.0%
AAATCAATTGCAGCTAATGC+TGG + chr4_4:62249606-62249625 Msa0693350:CDS 35.0%
AGAAGACTAGAACATTTGAC+TGG + chr4_4:62249652-62249671 Msa0693350:CDS 35.0%
AGAACATTTGACTGGAGAAT+CGG + chr4_4:62249660-62249679 Msa0693350:CDS 35.0%
!! CTATTTTAGGGAGTTATACC+AGG - chr4_4:62249861-62249880 None:intergenic 35.0%
ATTCGATGATGAATGTCCAT+TGG + chr4_4:62249918-62249937 Msa0693350:three_prime_UTR 35.0%
TTCGATGATGAATGTCCATT+GGG + chr4_4:62249919-62249938 Msa0693350:three_prime_UTR 35.0%
!! CATTGGGTTGATTAGTACTT+GGG + chr4_4:62249935-62249954 Msa0693350:three_prime_UTR 35.0%
ATAGGGAGTTGAATAGTGTT+AGG + chr4_4:62250074-62250093 Msa0693350:three_prime_UTR 35.0%
ACACACTTAAGCATCCAAAT+TGG - chr4_4:62250198-62250217 None:intergenic 35.0%
!! GAGGTACTGAAATCTATTGA+AGG + chr4_4:62250270-62250289 Msa0693350:three_prime_UTR 35.0%
TAGACCATGCATCTAAGAAA+AGG - chr4_4:62250423-62250442 None:intergenic 35.0%
!! GTATTTGTAACGGACTACAG+TGG - chr4_4:62243431-62243450 None:intergenic 40.0%
TATTCACACTGTCAGTGTCA+GGG - chr4_4:62243466-62243485 None:intergenic 40.0%
ATATTCACACTGTCAGTGTC+AGG - chr4_4:62243467-62243486 None:intergenic 40.0%
! GTGTGAATATTTTGCGGGAA+AGG + chr4_4:62243477-62243496 Msa0693350:five_prime_UTR 40.0%
AAGAAGAAGAGAGATGTGTG+AGG - chr4_4:62243551-62243570 None:intergenic 40.0%
GAAACCCACAATTTGTGGTA+CGG + chr4_4:62243702-62243721 Msa0693350:CDS 40.0%
AAACCCACAATTTGTGGTAC+GGG + chr4_4:62243703-62243722 Msa0693350:CDS 40.0%
AGCCCTAAGAAGATATCCTT+CGG + chr4_4:62243728-62243747 Msa0693350:CDS 40.0%
ATCCCTACATTCTTTACCGA+AGG - chr4_4:62243747-62243766 None:intergenic 40.0%
ACAGAGGGTAAGTGTTTGTT+TGG - chr4_4:62243956-62243975 None:intergenic 40.0%
AAACAAACACTTACCCTCTG+TGG + chr4_4:62243955-62243974 Msa0693350:intron 40.0%
CCAAACATGTTGTATGAGTC+TGG - chr4_4:62244181-62244200 None:intergenic 40.0%
CCAGACTCATACAACATGTT+TGG + chr4_4:62244178-62244197 Msa0693350:intron 40.0%
CTCTTAAACACTCTCACAAG+TGG - chr4_4:62244236-62244255 None:intergenic 40.0%
!! GAGAGGAGCTTGTTGAAATA+GGG - chr4_4:62244302-62244321 None:intergenic 40.0%
!! AGAGAGGAGCTTGTTGAAAT+AGG - chr4_4:62244303-62244322 None:intergenic 40.0%
TATTTCAACAAGCTCCTCTC+TGG + chr4_4:62244302-62244321 Msa0693350:intron 40.0%
ATTTCAACAAGCTCCTCTCT+GGG + chr4_4:62244303-62244322 Msa0693350:intron 40.0%
TTTCATAAGCTATCCCAGAG+AGG - chr4_4:62244319-62244338 None:intergenic 40.0%
TCAAAGGGCCATACAGTATA+GGG - chr4_4:62244456-62244475 None:intergenic 40.0%
ATCAAAGGGCCATACAGTAT+AGG - chr4_4:62244457-62244476 None:intergenic 40.0%
TCCAATGCAATTGAGAATGC+TGG + chr4_4:62244618-62244637 Msa0693350:CDS 40.0%
ACCAGCATTCTCAATTGCAT+TGG - chr4_4:62244622-62244641 None:intergenic 40.0%
AAGGTAGAACCTAACAACCA+TGG - chr4_4:62244668-62244687 None:intergenic 40.0%
TTTACTTGCAACCTACAAGC+AGG - chr4_4:62244756-62244775 None:intergenic 40.0%
! ATGAATGATTTGGCTGGTGA+TGG + chr4_4:62244776-62244795 Msa0693350:CDS 40.0%
AGCCAAAATAATTGCAGTGC+TGG - chr4_4:62244804-62244823 None:intergenic 40.0%
! GAAGTATTCCTGTTGAAGGA+AGG + chr4_4:62244936-62244955 Msa0693350:CDS 40.0%
ATATGATCCCTTCCTTCAAC+AGG - chr4_4:62244947-62244966 None:intergenic 40.0%
GAAGGAAGGGATCATATCAA+AGG + chr4_4:62244950-62244969 Msa0693350:CDS 40.0%
GCTGAAGCTATAGAGAAGAT+TGG + chr4_4:62245115-62245134 Msa0693350:CDS 40.0%
ACCTCTGTGGTAATTGAAGA+AGG + chr4_4:62245181-62245200 Msa0693350:intron 40.0%
CCTCTGTGGTAATTGAAGAA+GGG + chr4_4:62245182-62245201 Msa0693350:intron 40.0%
GGTAATTGAAGAAGGGATGA+AGG + chr4_4:62245189-62245208 Msa0693350:intron 40.0%
GGACATGATCATTCAGATCT+GGG - chr4_4:62245656-62245675 None:intergenic 40.0%
!! CACAATGGATTTTTCCTGGT+TGG - chr4_4:62245758-62245777 None:intergenic 40.0%
CAACCAGGAAAAATCCATTG+TGG + chr4_4:62245756-62245775 Msa0693350:CDS 40.0%
!! ACTCCACAATGGATTTTTCC+TGG - chr4_4:62245762-62245781 None:intergenic 40.0%
AGCATTGTCAAACTCCACAA+TGG - chr4_4:62245773-62245792 None:intergenic 40.0%
!! TGCATAGCTTTTTCCAGCAA+AGG - chr4_4:62245844-62245863 None:intergenic 40.0%
TGCTCCGCTCTTAATTATTG+CGG + chr4_4:62245870-62245889 Msa0693350:CDS 40.0%
TCCTCCGCAATAATTAAGAG+CGG - chr4_4:62245877-62245896 None:intergenic 40.0%
ACAAGATATTGCGCTCATGA+CGG + chr4_4:62246005-62246024 Msa0693350:CDS 40.0%
CCGAGTTTATCAAATGCAGT+AGG - chr4_4:62246038-62246057 None:intergenic 40.0%
CAAGATTACAATCCACCTAG+CGG + chr4_4:62246287-62246306 Msa0693350:intron 40.0%
ACATACTGAAACAATCCGCT+AGG - chr4_4:62246305-62246324 None:intergenic 40.0%
CATGGGAACAAAGACATTTG+AGG - chr4_4:62246430-62246449 None:intergenic 40.0%
TACGATTCGTTGCAAGACAT+GGG - chr4_4:62246447-62246466 None:intergenic 40.0%
ATACGATTCGTTGCAAGACA+TGG - chr4_4:62246448-62246467 None:intergenic 40.0%
ATGTCTTGCAACGAATCGTA+TGG + chr4_4:62246447-62246466 Msa0693350:intron 40.0%
AACACATTTCCAGCTTTGCT+TGG + chr4_4:62246495-62246514 Msa0693350:intron 40.0%
! GGATTTTCTCTGTGGAGATT+TGG + chr4_4:62246551-62246570 Msa0693350:CDS 40.0%
GATTTGGGTCTTACACTTGA+AGG + chr4_4:62246567-62246586 Msa0693350:CDS 40.0%
ACATACATGTCCTGTCATCA+TGG + chr4_4:62246810-62246829 Msa0693350:intron 40.0%
CATACATGTCCTGTCATCAT+GGG + chr4_4:62246811-62246830 Msa0693350:intron 40.0%
!! GGTTCTGAGTTCAATGACAT+TGG + chr4_4:62247026-62247045 Msa0693350:intron 40.0%
! TCTTTTGCACTAGATGGAGT+TGG - chr4_4:62247274-62247293 None:intergenic 40.0%
TCACAATGGAGGAATTTGGA+AGG + chr4_4:62247548-62247567 Msa0693350:intron 40.0%
! TTTTCATAAGCCATCTTGGG+GGG - chr4_4:62247705-62247724 None:intergenic 40.0%
! GTTTTCATAAGCCATCTTGG+GGG - chr4_4:62247706-62247725 None:intergenic 40.0%
ACAAAGAGGGAACAGCTTAT+GGG - chr4_4:62247731-62247750 None:intergenic 40.0%
AACAAAGAGGGAACAGCTTA+TGG - chr4_4:62247732-62247751 None:intergenic 40.0%
AACTTGAGGATAGAAAGCTG+AGG + chr4_4:62248077-62248096 Msa0693350:CDS 40.0%
AGGAACAAGTCCCTCATTTA+TGG - chr4_4:62248134-62248153 None:intergenic 40.0%
! ATAAATGAGGGACTTGTTCC+TGG + chr4_4:62248133-62248152 Msa0693350:CDS 40.0%
GAAGATCTAGATGAGCACAT+TGG + chr4_4:62248214-62248233 Msa0693350:CDS 40.0%
AAATATTCAGACTCGGAGAG+GGG - chr4_4:62248294-62248313 None:intergenic 40.0%
!! TATTCTTCCCCTGCTACTTT+AGG + chr4_4:62248817-62248836 Msa0693350:intron 40.0%
!! ATTCTTCCCCTGCTACTTTA+GGG + chr4_4:62248818-62248837 Msa0693350:intron 40.0%
CTTATTCCCTAAAGTAGCAG+GGG - chr4_4:62248827-62248846 None:intergenic 40.0%
GCTTATTCCCTAAAGTAGCA+GGG - chr4_4:62248828-62248847 None:intergenic 40.0%
!! GCTTGAGATTCTAGAGTACT+TGG - chr4_4:62249054-62249073 None:intergenic 40.0%
TGGTTTCTCCATCTACAATG+TGG - chr4_4:62249134-62249153 None:intergenic 40.0%
AGAAACCACTGAACTATCCA+CGG + chr4_4:62249146-62249165 Msa0693350:intron 40.0%
!! TAAAACCACGGTATTGACAC+GGG - chr4_4:62249222-62249241 None:intergenic 40.0%
! TTTTTCTCTCCTAAGGGACA+GGG - chr4_4:62249355-62249374 None:intergenic 40.0%
! ATTTTTCTCTCCTAAGGGAC+AGG - chr4_4:62249356-62249375 None:intergenic 40.0%
! TTTTCCCCTCCTTTTCTTGT+AGG + chr4_4:62249474-62249493 Msa0693350:intron 40.0%
CAATCCTACAAGAAAAGGAG+GGG - chr4_4:62249481-62249500 None:intergenic 40.0%
CTCAATCCTACAAGAAAAGG+AGG - chr4_4:62249483-62249502 None:intergenic 40.0%
AGTTGTGCATGAATCATTGC+AGG + chr4_4:62249566-62249585 Msa0693350:intron 40.0%
ATCTTCATATGTGCCAGTCA+TGG - chr4_4:62249694-62249713 None:intergenic 40.0%
CCAAGTACTAATCAACCCAA+TGG - chr4_4:62249937-62249956 None:intergenic 40.0%
!! CCATTGGGTTGATTAGTACT+TGG + chr4_4:62249934-62249953 Msa0693350:three_prime_UTR 40.0%
!! GGTTGCTGTTTCTTACTCTT+GGG + chr4_4:62249994-62250013 Msa0693350:three_prime_UTR 40.0%
!! GTTGCTGTTTCTTACTCTTG+GGG + chr4_4:62249995-62250014 Msa0693350:three_prime_UTR 40.0%
TCCTATGCTTCGTGATACAT+GGG - chr4_4:62250031-62250050 None:intergenic 40.0%
TTCCTATGCTTCGTGATACA+TGG - chr4_4:62250032-62250051 None:intergenic 40.0%
CACGAAGCATAGGAACAATT+AGG + chr4_4:62250037-62250056 Msa0693350:three_prime_UTR 40.0%
TCAGTACCTCGAGATATTAG+CGG - chr4_4:62250260-62250279 None:intergenic 40.0%
TAACATCTCCCAATAGTTCC+CGG + chr4_4:62250296-62250315 Msa0693350:three_prime_UTR 40.0%
AAGAATATGTCATGGCCTCA+AGG - chr4_4:62250345-62250364 None:intergenic 40.0%
! ATTTTGCGGGAAAGGATTGG+CGG + chr4_4:62243485-62243504 Msa0693350:five_prime_UTR 45.0%
! AGGATTGGCGGTATCCAATT+TGG + chr4_4:62243497-62243516 Msa0693350:five_prime_UTR 45.0%
TGGAAGAGAATCGATTGGGA+GGG - chr4_4:62243574-62243593 None:intergenic 45.0%
ATGGAAGAGAATCGATTGGG+AGG - chr4_4:62243575-62243594 None:intergenic 45.0%
GGCGAATAGTCAGACCAAAA+TGG - chr4_4:62243662-62243681 None:intergenic 45.0%
CTCCGACGAAAAGACTGAAA+CGG - chr4_4:62243683-62243702 None:intergenic 45.0%
TCGGAGAAACCCACAATTTG+TGG + chr4_4:62243697-62243716 Msa0693350:CDS 45.0%
TTGCCCGTACCACAAATTGT+GGG - chr4_4:62243709-62243728 None:intergenic 45.0%
GTGTTAACCTTTGGGTCCAA+CGG - chr4_4:62243816-62243835 None:intergenic 45.0%
!! TGGTGCCATGCTAATTCAAG+AGG + chr4_4:62244638-62244657 Msa0693350:CDS 45.0%
GTCGACCTCTTGAATTAGCA+TGG - chr4_4:62244646-62244665 None:intergenic 45.0%
CTAATTCAAGAGGTCGACCA+TGG + chr4_4:62244648-62244667 Msa0693350:intron 45.0%
GCTCGCGCTATGATTAAATC+TGG + chr4_4:62244821-62244840 Msa0693350:CDS 45.0%
GTCATTTCCAGCAGAAATCG+AGG - chr4_4:62245074-62245093 None:intergenic 45.0%
GCTGGAAATGACGAGTATGT+TGG + chr4_4:62245082-62245101 Msa0693350:CDS 45.0%
AGATGATGAGGATGACTCGA+TGG - chr4_4:62245158-62245177 None:intergenic 45.0%
CACAGAGGTTTCAGATGATG+AGG - chr4_4:62245170-62245189 None:intergenic 45.0%
! CTCATCATCTGAAACCTCTG+TGG + chr4_4:62245168-62245187 Msa0693350:intron 45.0%
CCCTTCTTCAATTACCACAG+AGG - chr4_4:62245185-62245204 None:intergenic 45.0%
GGGACATGATCATTCAGATC+TGG - chr4_4:62245657-62245676 None:intergenic 45.0%
TCCTTACTTCATCACCAACC+AGG + chr4_4:62245741-62245760 Msa0693350:CDS 45.0%
!! TCCTGGTTGGTGATGAAGTA+AGG - chr4_4:62245745-62245764 None:intergenic 45.0%
TCCGCTCTTAATTATTGCGG+AGG + chr4_4:62245873-62245892 Msa0693350:CDS 45.0%
GTTGCAGCTGTAAAATGTCC+AGG + chr4_4:62245955-62245974 Msa0693350:CDS 45.0%
GCTGTAAAATGTCCAGGACT+CGG + chr4_4:62245961-62245980 Msa0693350:CDS 45.0%
CAAGATATTGCGCTCATGAC+GGG + chr4_4:62246006-62246025 Msa0693350:CDS 45.0%
AAGCCTAGTATGAAGGAAGC+TGG - chr4_4:62246073-62246092 None:intergenic 45.0%
TTGGACAGTATGGCTGTCTT+GGG + chr4_4:62246214-62246233 Msa0693350:intron 45.0%
!! CGCTAGGTGGATTGTAATCT+TGG - chr4_4:62246289-62246308 None:intergenic 45.0%
TACTGAAACAATCCGCTAGG+TGG - chr4_4:62246302-62246321 None:intergenic 45.0%
CTTTCATTGCAGTACCAAGC+TGG - chr4_4:62246605-62246624 None:intergenic 45.0%
! TCTCTGAGAGCTTTCTCGAA+TGG - chr4_4:62246740-62246759 None:intergenic 45.0%
GAGAGAATTGCGAAACTCAC+TGG + chr4_4:62246756-62246775 Msa0693350:CDS 45.0%
AGAATTGCGAAACTCACTGG+CGG + chr4_4:62246759-62246778 Msa0693350:CDS 45.0%
TGGCGGTATAGCCGTTATAA+AGG + chr4_4:62246776-62246795 Msa0693350:intron 45.0%
GGGTCAAGGTGATCAGAATA+AGG - chr4_4:62246841-62246860 None:intergenic 45.0%
ATTCAACCAAGGACCGAAGA+AGG + chr4_4:62246929-62246948 Msa0693350:intron 45.0%
AGCAATGGGACATCCTTCTT+CGG - chr4_4:62246945-62246964 None:intergenic 45.0%
ACTAGCAACATTCTTGCGTG+AGG + chr4_4:62247125-62247144 Msa0693350:intron 45.0%
CTAGCAACATTCTTGCGTGA+GGG + chr4_4:62247126-62247145 Msa0693350:intron 45.0%
AACATTCTTGCGTGAGGGTT+TGG + chr4_4:62247131-62247150 Msa0693350:intron 45.0%
!! AGGGTGATGGGAAACAAAGA+GGG - chr4_4:62247744-62247763 None:intergenic 45.0%
!! TAGGGTGATGGGAAACAAAG+AGG - chr4_4:62247745-62247764 None:intergenic 45.0%
TGTGCACCTACCTACACAAT+TGG - chr4_4:62248046-62248065 None:intergenic 45.0%
ACACACTGAGCTAGAACTTG+AGG + chr4_4:62248063-62248082 Msa0693350:CDS 45.0%
GGATAGAAAGCTGAGGATTG+AGG + chr4_4:62248084-62248103 Msa0693350:CDS 45.0%
! TGCCACATATGTCCACCTTT+TGG + chr4_4:62248162-62248181 Msa0693350:CDS 45.0%
GTCCAAAAGGTGGACATATG+TGG - chr4_4:62248167-62248186 None:intergenic 45.0%
CAGGTATCAAGTCCAAAAGG+TGG - chr4_4:62248177-62248196 None:intergenic 45.0%
TGGCAGGTATCAAGTCCAAA+AGG - chr4_4:62248180-62248199 None:intergenic 45.0%
ACCTGCCATAAAGAACTCCA+TGG + chr4_4:62248192-62248211 Msa0693350:CDS 45.0%
TCCATGGAGTTCTTTATGGC+AGG - chr4_4:62248196-62248215 None:intergenic 45.0%
GTGCTCATCTAGATCTTCCA+TGG - chr4_4:62248212-62248231 None:intergenic 45.0%
!! GCACATTGGTGCTGATATTG+TGG + chr4_4:62248228-62248247 Msa0693350:CDS 45.0%
GGCTTATTCCCTAAAGTAGC+AGG - chr4_4:62248829-62248848 None:intergenic 45.0%
CGTTTGATCCATTTCCTGGA+TGG + chr4_4:62249107-62249126 Msa0693350:intron 45.0%
AATGTGGACCATCCAGGAAA+TGG - chr4_4:62249118-62249137 None:intergenic 45.0%
ATCTACAATGTGGACCATCC+AGG - chr4_4:62249124-62249143 None:intergenic 45.0%
TGGATGGTCCACATTGTAGA+TGG + chr4_4:62249123-62249142 Msa0693350:intron 45.0%
GCAAACTTTAACATGGACCG+TGG - chr4_4:62249166-62249185 None:intergenic 45.0%
!! AAAACCACGGTATTGACACG+GGG - chr4_4:62249221-62249240 None:intergenic 45.0%
TAACTCAGATGCAAACACGC+AGG - chr4_4:62249319-62249338 None:intergenic 45.0%
ATCGGATACAATGCCATGAC+TGG + chr4_4:62249678-62249697 Msa0693350:CDS 45.0%
!! CGGTTGCTGTTTCTTACTCT+TGG + chr4_4:62249993-62250012 Msa0693350:three_prime_UTR 45.0%
ACCCATGTATCACGAAGCAT+AGG + chr4_4:62250027-62250046 Msa0693350:three_prime_UTR 45.0%
TGTGTAGACCGGGAACTATT+GGG - chr4_4:62250307-62250326 None:intergenic 45.0%
! CTGGTCTATCCTTTTCCTTG+AGG + chr4_4:62250327-62250346 Msa0693350:three_prime_UTR 45.0%
ATGTCATGGCCTCAAGGAAA+AGG - chr4_4:62250339-62250358 None:intergenic 45.0%
! TCACTTCGCTCCGTCCATTT+TGG + chr4_4:62243645-62243664 Msa0693350:intron 50.0%
! CGCCGTTTCAGTCTTTTCGT+CGG + chr4_4:62243678-62243697 Msa0693350:intron 50.0%
CTTGCCCGTACCACAAATTG+TGG - chr4_4:62243710-62243729 None:intergenic 50.0%
GATGCTGTCTCTCTTACCGT+TGG + chr4_4:62243797-62243816 Msa0693350:CDS 50.0%
TCTCTTACCGTTGGACCCAA+AGG + chr4_4:62243806-62243825 Msa0693350:CDS 50.0%
CATGTTGTATGAGTCTGGGC+CGG - chr4_4:62244176-62244195 None:intergenic 50.0%
AGAGGTCGACCATGGTTGTT+AGG + chr4_4:62244656-62244675 Msa0693350:intron 50.0%
AAATGTCCAGGACTCGGAGA+TGG + chr4_4:62245967-62245986 Msa0693350:CDS 50.0%
TTCTTTCCATCTCCGAGTCC+TGG - chr4_4:62245976-62245995 None:intergenic 50.0%
CTGCCAGCTTCCTTCATACT+AGG + chr4_4:62246067-62246086 Msa0693350:intron 50.0%
GTTGGACAGTATGGCTGTCT+TGG + chr4_4:62246213-62246232 Msa0693350:intron 50.0%
! ACAGGTGCGGATTTTCTCTG+TGG + chr4_4:62246543-62246562 Msa0693350:intron 50.0%
GGTACAACATCAGACCAGCT+TGG + chr4_4:62246588-62246607 Msa0693350:CDS 50.0%
TAAGGTCAGCCCATGATGAC+AGG - chr4_4:62246823-62246842 None:intergenic 50.0%
! AATGAGGGACTTGTTCCTGG+AGG + chr4_4:62248136-62248155 Msa0693350:CDS 50.0%
! ATGAGGGACTTGTTCCTGGA+GGG + chr4_4:62248137-62248156 Msa0693350:CDS 50.0%
!! TGGTGCTGATATTGTGGCGA+AGG + chr4_4:62248234-62248253 Msa0693350:CDS 50.0%
ATGGACCGTGGATAGTTCAG+TGG - chr4_4:62249154-62249173 None:intergenic 50.0%
!! AAACCACGGTATTGACACGG+GGG - chr4_4:62249220-62249239 None:intergenic 50.0%
CTTTGATTACAGCTCCCCTC+TGG + chr4_4:62249270-62249289 Msa0693350:intron 50.0%
AGGGACAGGGTTAGGCTATA+TGG - chr4_4:62249342-62249361 None:intergenic 50.0%
ATAGCCTAACCCTGTCCCTT+AGG + chr4_4:62249343-62249362 Msa0693350:intron 50.0%
GCAGCTAATGCTGGAGTTGA+TGG + chr4_4:62249615-62249634 Msa0693350:CDS 50.0%
GCACATCTTGCAACTCGACT+AGG - chr4_4:62249741-62249760 None:intergenic 50.0%
CAAAGTGCAGTCTCCATTGC+TGG + chr4_4:62249765-62249784 Msa0693350:CDS 50.0%
AGTTAGAACCACGCCAGCAA+TGG - chr4_4:62249781-62249800 None:intergenic 50.0%
GCTTAAGTGTGTCAGTGCCA+TGG + chr4_4:62250206-62250225 Msa0693350:three_prime_UTR 50.0%
TACCTCGAGATATTAGCGGC+TGG - chr4_4:62250256-62250275 None:intergenic 50.0%
GTGTGTAGACCGGGAACTAT+TGG - chr4_4:62250308-62250327 None:intergenic 50.0%
ATAGTTCCCGGTCTACACAC+TGG + chr4_4:62250308-62250327 Msa0693350:three_prime_UTR 50.0%
GATAGACCAGTGTGTAGACC+GGG - chr4_4:62250317-62250336 None:intergenic 50.0%
GGATAGACCAGTGTGTAGAC+CGG - chr4_4:62250318-62250337 None:intergenic 50.0%
ATGGACGGAGCGAAGTGAGA+GGG - chr4_4:62243643-62243662 None:intergenic 55.0%
AATGGACGGAGCGAAGTGAG+AGG - chr4_4:62243644-62243663 None:intergenic 55.0%
TGTATGAGTCTGGGCCGGTT+TGG - chr4_4:62244171-62244190 None:intergenic 55.0%
ATCGAGGCTACAGCTGCACA+GGG - chr4_4:62245058-62245077 None:intergenic 55.0%
AATCGAGGCTACAGCTGCAC+AGG - chr4_4:62245059-62245078 None:intergenic 55.0%
GCTGTAGCCTCGATTTCTGC+TGG + chr4_4:62245064-62245083 Msa0693350:intron 55.0%
GGACGTCACTGCACAAGTGT+TGG + chr4_4:62245894-62245913 Msa0693350:CDS 55.0%
GGAGGTCAACCAAGCAAAGC+TGG - chr4_4:62246507-62246526 None:intergenic 55.0%
GGACATCCTTCTTCGGTCCT+TGG - chr4_4:62246938-62246957 None:intergenic 55.0%
! TGAGGGACTTGTTCCTGGAG+GGG + chr4_4:62248138-62248157 Msa0693350:CDS 55.0%
ATACCCCTCAGTTGCCAGAG+GGG - chr4_4:62249287-62249306 None:intergenic 55.0%
CATACCCCTCAGTTGCCAGA+GGG - chr4_4:62249288-62249307 None:intergenic 55.0%
ACATACCCCTCAGTTGCCAG+AGG - chr4_4:62249289-62249308 None:intergenic 55.0%
CTCTCCTAAGGGACAGGGTT+AGG - chr4_4:62249350-62249369 None:intergenic 55.0%
AACCAAGCCACGTGTACCTC+TGG + chr4_4:62249833-62249852 Msa0693350:CDS 55.0%
GGAGTTATACCAGGGACCAG+AGG - chr4_4:62249852-62249871 None:intergenic 55.0%
AGCCAGCCGCTAATATCTCG+AGG + chr4_4:62250251-62250270 Msa0693350:three_prime_UTR 55.0%
TGGACGGAGCGAAGTGAGAG+GGG - chr4_4:62243642-62243661 None:intergenic 60.0%
AGGCTACAGCTGCACAGGGT+GGG - chr4_4:62245054-62245073 None:intergenic 60.0%
! GAGGGACTTGTTCCTGGAGG+GGG + chr4_4:62248139-62248158 Msa0693350:CDS 60.0%
ACATATGTGGCACCCCCTCC+AGG - chr4_4:62248154-62248173 None:intergenic 60.0%
CACGGGGGAGGAAGGATGAA+TGG - chr4_4:62249205-62249224 None:intergenic 60.0%
!! GGTATTGACACGGGGGAGGA+AGG - chr4_4:62249213-62249232 None:intergenic 60.0%
AGCTCCCCTCTGGCAACTGA+GGG + chr4_4:62249280-62249299 Msa0693350:intron 60.0%
TGCAGTCTCCATTGCTGGCG+TGG + chr4_4:62249770-62249789 Msa0693350:CDS 60.0%
! GACCAGAGGTACACGTGGCT+TGG - chr4_4:62249838-62249857 None:intergenic 60.0%
GGACGGAGCGAAGTGAGAGG+GGG - chr4_4:62243641-62243660 None:intergenic 65.0%
GGCTACAGCTGCACAGGGTG+GGG - chr4_4:62245053-62245072 None:intergenic 65.0%
GAGGCTACAGCTGCACAGGG+TGG - chr4_4:62245055-62245074 None:intergenic 65.0%
!! CCACGGTATTGACACGGGGG+AGG - chr4_4:62249217-62249236 None:intergenic 65.0%
CCTCCCCCGTGTCAATACCG+TGG + chr4_4:62249214-62249233 Msa0693350:intron 65.0%
CAGCTCCCCTCTGGCAACTG+AGG + chr4_4:62249279-62249298 Msa0693350:intron 65.0%
GCTCCCCTCTGGCAACTGAG+GGG + chr4_4:62249281-62249300 Msa0693350:intron 65.0%
! CCAGGGACCAGAGGTACACG+TGG - chr4_4:62249843-62249862 None:intergenic 65.0%
CCACGTGTACCTCTGGTCCC+TGG + chr4_4:62249840-62249859 Msa0693350:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 62243399 62250498 62243399 ID=Msa0693350;Name=Msa0693350
chr4_4 mRNA 62243399 62250498 62243399 ID=Msa0693350-mRNA-1;Parent=Msa0693350;Name=Msa0693350-mRNA-1;_AED=0.12;_eAED=0.12;_QI=131|0.66|0.6|1|0.66|0.5|10|623|551
chr4_4 exon 62243399 62243607 62243399 ID=Msa0693350-mRNA-1:exon:17363;Parent=Msa0693350-mRNA-1
chr4_4 exon 62243689 62243827 62243689 ID=Msa0693350-mRNA-1:exon:17364;Parent=Msa0693350-mRNA-1
chr4_4 exon 62244538 62244659 62244538 ID=Msa0693350-mRNA-1:exon:17365;Parent=Msa0693350-mRNA-1
chr4_4 exon 62244764 62244971 62244764 ID=Msa0693350-mRNA-1:exon:17366;Parent=Msa0693350-mRNA-1
chr4_4 exon 62245065 62245147 62245065 ID=Msa0693350-mRNA-1:exon:17367;Parent=Msa0693350-mRNA-1
chr4_4 exon 62245721 62245801 62245721 ID=Msa0693350-mRNA-1:exon:17368;Parent=Msa0693350-mRNA-1
chr4_4 exon 62245814 62246027 62245814 ID=Msa0693350-mRNA-1:exon:17369;Parent=Msa0693350-mRNA-1
chr4_4 exon 62246547 62246788 62246547 ID=Msa0693350-mRNA-1:exon:17370;Parent=Msa0693350-mRNA-1
chr4_4 exon 62248055 62248255 62248055 ID=Msa0693350-mRNA-1:exon:17371;Parent=Msa0693350-mRNA-1
chr4_4 exon 62249588 62250498 62249588 ID=Msa0693350-mRNA-1:exon:17372;Parent=Msa0693350-mRNA-1
chr4_4 five_prime_UTR 62243399 62243529 62243399 ID=Msa0693350-mRNA-1:five_prime_utr;Parent=Msa0693350-mRNA-1
chr4_4 CDS 62243530 62243607 62243530 ID=Msa0693350-mRNA-1:cds;Parent=Msa0693350-mRNA-1
chr4_4 CDS 62243689 62243827 62243689 ID=Msa0693350-mRNA-1:cds;Parent=Msa0693350-mRNA-1
chr4_4 CDS 62244538 62244659 62244538 ID=Msa0693350-mRNA-1:cds;Parent=Msa0693350-mRNA-1
chr4_4 CDS 62244764 62244971 62244764 ID=Msa0693350-mRNA-1:cds;Parent=Msa0693350-mRNA-1
chr4_4 CDS 62245065 62245147 62245065 ID=Msa0693350-mRNA-1:cds;Parent=Msa0693350-mRNA-1
chr4_4 CDS 62245721 62245801 62245721 ID=Msa0693350-mRNA-1:cds;Parent=Msa0693350-mRNA-1
chr4_4 CDS 62245814 62246027 62245814 ID=Msa0693350-mRNA-1:cds;Parent=Msa0693350-mRNA-1
chr4_4 CDS 62246547 62246788 62246547 ID=Msa0693350-mRNA-1:cds;Parent=Msa0693350-mRNA-1
chr4_4 CDS 62248055 62248255 62248055 ID=Msa0693350-mRNA-1:cds;Parent=Msa0693350-mRNA-1
chr4_4 CDS 62249588 62249875 62249588 ID=Msa0693350-mRNA-1:cds;Parent=Msa0693350-mRNA-1
chr4_4 three_prime_UTR 62249876 62250498 62249876 ID=Msa0693350-mRNA-1:three_prime_utr;Parent=Msa0693350-mRNA-1
Gene Sequence

>Msa0693350

ATGAATACGCAAATTCAACCTCACACATCTCTCTTCTTCTTCCCTCCCAATCGATTCTCTTCCATTTCTTCATTTTCATCTTTTCGTCGGAGAAACCCACAATTTGTGGTACGGGCAAGCCCTAAGAAGATATCCTTCGGTAAAGAATGTAGGGATAATTTACAAGTCGGGATTGATAAACTCGCTGATGCTGTCTCTCTTACCGTTGGACCCAAAGGACGGAATGTTATTCTTTCTGAATCTGGAAAACTTAAAGTAATAAATGACGGCGTCACAATTGCACGATCCATAGAGCTTTCCAATGCAATTGAGAATGCTGGTGCCATGCTAATTCAAGAGGTTGCAAGTAAAATGAATGATTTGGCTGGTGATGGTACCAGCACTGCAATTATTTTGGCTCGCGCTATGATTAAATCTGGATTATCAGCAGTTGATTTTGGGGCAAATCCTATTTCTCTGAAGAAGGGAATGGAAAAGACAGTAAAAGATTTGGTGAAGTTCTTGAAGAAGAGAAGTATTCCTGTTGAAGGAAGGGATCATATCAAAGCTGTAGCCTCGATTTCTGCTGGAAATGACGAGTATGTTGGTAATTTGATTGCTGAAGCTATAGAGAAGATTGGATTTGATGGGATTGACAGGGGTTACATGTCTCCTTACTTCATCACCAACCAGGAAAAATCCATTGTGGAGTTTGACAATGCTAAAGTTTTGAAGATTTCAAGCGTCAAAGAAATAGTTCCTTTGCTGGAAAAAGCTATGCAGTTGAGTGCTCCGCTCTTAATTATTGCGGAGGACGTCACTGCACAAGTGTTGGAAACATTAATAGTGAACAAAATGCAAGGATTACTACGAGTTGCAGCTGTAAAATGTCCAGGACTCGGAGATGGAAAGAAATCACTGTTACAAGATATTGCGCTCATGACGGGTGCGGATTTTCTCTGTGGAGATTTGGGTCTTACACTTGAAGGTACAACATCAGACCAGCTTGGTACTGCAATGAAAGTGAAAATAACCAGTAATGCAACAACTATATTTGCTGATCCAAACACTAAGGCTGAAATTCAGGCTAGAATTTTACAGATAAAGAAGGATCTTATTGAAACAGACAATGCAAACCATTCGAGAAAGCTCTCAGAGAGAATTGCGAAACTCACTGGCGGTATAGCCGTAGGTGCACACACTGAGCTAGAACTTGAGGATAGAAAGCTGAGGATTGAGGATGCTAAGAATGCTACTTTTGCTGCCATAAATGAGGGACTTGTTCCTGGAGGGGGTGCCACATATGTCCACCTTTTGGACTTGATACCTGCCATAAAGAACTCCATGGAAGATCTAGATGAGCACATTGGTGCTGATATTGTGGCGAAGGCACTTGTCGAACCTGCTAAATCAATTGCAGCTAATGCTGGAGTTGATGGAGACGTTGTTGTCGAGAAGACTAGAACATTTGACTGGAGAATCGGATACAATGCCATGACTGGCACATATGAAGATCTTTTGAATGCTGGAGTAGCAGATCCTAGTCGAGTTGCAAGATGTGCTCTTCAAAGTGCAGTCTCCATTGCTGGCGTGGTTCTAACTACTCAAGCTATATTGGTTGATAAAGTAAAAAAAACCAAGCCACGTGTACCTCTGGTCCCTGGTATAACTCCCTAA
Protein sequence

>Msa0693350

MNTQIQPHTSLFFFPPNRFSSISSFSSFRRRNPQFVVRASPKKISFGKECRDNLQVGIDKLADAVSLTVGPKGRNVILSESGKLKVINDGVTIARSIELSNAIENAGAMLIQEVASKMNDLAGDGTSTAIILARAMIKSGLSAVDFGANPISLKKGMEKTVKDLVKFLKKRSIPVEGRDHIKAVASISAGNDEYVGNLIAEAIEKIGFDGIDRGYMSPYFITNQEKSIVEFDNAKVLKISSVKEIVPLLEKAMQLSAPLLIIAEDVTAQVLETLIVNKMQGLLRVAAVKCPGLGDGKKSLLQDIALMTGADFLCGDLGLTLEGTTSDQLGTAMKVKITSNATTIFADPNTKAEIQARILQIKKDLIETDNANHSRKLSERIAKLTGGIAVGAHTELELEDRKLRIEDAKNATFAAINEGLVPGGGATYVHLLDLIPAIKNSMEDLDEHIGADIVAKALVEPAKSIAANAGVDGDVVVEKTRTFDWRIGYNAMTGTYEDLLNAGVADPSRVARCALQSAVSIAGVVLTTQAILVDKVKKTKPRVPLVPGITP*