AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0556040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0556040 MtrunA17_Chr4g0043731 90.295 577 34 2 1 555 3 579 0.0 1022
Msa0556040 MtrunA17_Chr4g0028601 62.335 531 176 2 37 546 48 575 0.0 652
Msa0556040 MtrunA17_Chr1g0152141 46.516 531 257 6 39 544 48 576 4.39e-158 464
Msa0556040 MtrunA17_Chr1g0152151 46.011 539 258 6 37 544 40 576 1.20e-157 462
Msa0556040 MtrunA17_Chr1g0196761 39.259 540 302 5 37 553 33 569 5.79e-127 384
Msa0556040 MtrunA17_Chr1g0196751 41.255 526 282 6 37 538 33 555 4.32e-126 381
Msa0556040 MtrunA17_Chr5g0421251 43.167 461 235 6 51 487 52 509 5.94e-121 366
Msa0556040 MtrunA17_Chr8g0342341 37.313 536 308 5 39 548 36 569 4.91e-114 350
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0556040 AT5G18820.1 69.646 537 141 2 39 553 36 572 0.0 750
Msa0556040 AT5G18820.2 69.462 465 120 2 111 553 2 466 0.0 646
Msa0556040 AT2G28000.1 61.420 521 180 1 39 538 49 569 0.0 635
Msa0556040 AT5G18820.3 67.905 377 100 1 39 394 36 412 1.89e-176 505
Msa0556040 AT1G55490.5 45.620 548 267 8 27 549 48 589 3.59e-159 467
Msa0556040 AT1G55490.1 45.620 548 267 8 27 549 48 589 3.59e-159 467
Msa0556040 AT1G55490.3 45.620 548 267 8 27 549 48 589 3.59e-159 467
Msa0556040 AT1G55490.4 45.620 548 267 8 27 549 48 589 3.59e-159 467
Msa0556040 AT1G55490.2 45.620 548 267 8 27 549 48 589 3.59e-159 467
Msa0556040 AT3G13470.1 44.365 559 277 8 22 555 39 588 1.41e-156 461
Msa0556040 AT5G56500.2 46.642 536 257 8 39 548 53 585 1.52e-156 460
Msa0556040 AT5G56500.1 46.642 536 257 8 39 548 53 585 1.52e-156 460
Msa0556040 AT1G26230.1 40.293 546 294 10 39 555 41 583 2.33e-132 399
Msa0556040 AT1G26230.4 40.602 532 286 9 51 555 3 531 1.74e-131 395
Msa0556040 AT1G26230.3 40.762 525 281 9 58 555 2 523 5.40e-130 391
Msa0556040 AT3G23990.1 40.341 528 284 5 37 538 32 554 2.26e-125 380
Msa0556040 AT2G33210.1 40.114 526 288 6 37 538 33 555 1.04e-121 370
Msa0556040 AT2G33210.2 39.734 526 285 7 37 538 33 550 2.82e-118 362
Msa0556040 AT3G13860.1 39.665 537 296 6 37 548 32 565 1.36e-115 354
Msa0556040 AT1G26230.2 40.552 471 251 7 39 483 41 508 3.36e-114 350
Msa0556040 AT1G26230.5 40.594 404 211 7 39 416 41 441 2.07e-96 301

Find 159 sgRNAs with CRISPR-Local

Find 462 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACCGAATGATATCTTCTT+AGG 0.121291 4_1:-54068650 None:intergenic
ATCTTCCATGGAGTTCTTTA+TGG 0.165963 4_1:-54073118 None:intergenic
TACCAGCACTGCAATTATTT+TGG 0.200241 4_1:+54069734 Msa0556040:CDS
GTCAATAATAAACTCCAATT+TGG 0.200546 4_1:+54075090 Msa0556040:three_prime_UTR
GGATTATCAGCAGTTGCTTT+TGG 0.205560 4_1:+54069777 Msa0556040:CDS
AAATATAGTTGTTGCATTAC+TGG 0.223714 4_1:-54071569 None:intergenic
AAATTTATCAATTGACCTTT+AGG 0.231147 4_1:-54075362 None:intergenic
AATGTTATTCTTTCTGAATC+TGG 0.232870 4_1:+54069478 Msa0556040:CDS
ATTCCCTTCTTCAGAGAAAT+AGG 0.235778 4_1:-54069807 None:intergenic
TATAAAATGAATCGATAAAA+TGG 0.237331 4_1:-54075015 None:intergenic
TCTAACTACTCAAGCTATAT+TGG 0.244652 4_1:+54074703 Msa0556040:CDS
AGGAACAAGTCCCTCATTTA+TGG 0.247557 4_1:-54073052 None:intergenic
TTAAACTCTGCTTCAAAATC+AGG 0.260234 4_1:+54075297 Msa0556040:three_prime_UTR
TGCCACATATGTCCACCTTT+TGG 0.268341 4_1:+54073083 Msa0556040:CDS
CGGTTGCTGTTTCTTACTCT+TGG 0.295088 4_1:+54074902 Msa0556040:three_prime_UTR
GTTTGACAATGCTAAAGTTT+TGG 0.318990 4_1:+54070715 Msa0556040:CDS
GGTTGCTGTTTCTTACTCTT+GGG 0.329280 4_1:+54074903 Msa0556040:three_prime_UTR
GCACACTTAAACATCCAAAT+TGG 0.338051 4_1:-54075104 None:intergenic
AGAAATGGAGAGAATCGATT+TGG 0.340802 4_1:-54068497 None:intergenic
CAAAGAAATAGTTCCTTTGC+TGG 0.343686 4_1:+54070763 Msa0556040:CDS
AATTGCATCGGAAAGCTCTA+TGG 0.352982 4_1:-54069542 None:intergenic
GCTCGCGCTATGATTAAATC+TGG 0.360799 4_1:+54069756 Msa0556040:CDS
TGAATTTCAGCCTTAGTGTT+TGG 0.363338 4_1:-54071598 None:intergenic
CCATTGGGTTGATTAGTACT+TGG 0.365452 4_1:+54074843 Msa0556040:three_prime_UTR
ATAAATGAGGGACTTGTTCC+TGG 0.377624 4_1:+54073054 Msa0556040:CDS
TTCTTTCCATCTCCGAGTCC+TGG 0.378180 4_1:-54070908 None:intergenic
ATATGATCCCTTCCTTCAAC+AGG 0.380233 4_1:-54069879 None:intergenic
ATAGGGAGTTGAATAGTGTT+AGG 0.390313 4_1:+54074983 Msa0556040:three_prime_UTR
AAACACTAAGGCTGAAATTC+AGG 0.392021 4_1:+54071600 Msa0556040:CDS
GTGTGTAGACCGGGAACTAT+TGG 0.396418 4_1:-54075214 None:intergenic
GGAAAAGACAGTAAAAGATT+TGG 0.397877 4_1:+54069830 Msa0556040:CDS
TCCTGGTTGGTGATGAAGTA+AGG 0.397913 4_1:-54070677 None:intergenic
TTCCTATGCTTCGTGATACA+TGG 0.398814 4_1:-54074938 None:intergenic
TTATTGACAATATCAGATAT+AGG 0.399438 4_1:-54075075 None:intergenic
ATAGAGAAGATTGGATTTGA+TGG 0.411296 4_1:+54070059 Msa0556040:CDS
TATCATCTCCCAATAGTTCC+CGG 0.411310 4_1:+54075205 Msa0556040:three_prime_UTR
GAAATGGAGAGAATCGATTT+GGG 0.412264 4_1:-54068496 None:intergenic
TGCAAGTAAAATGAATGATT+TGG 0.415477 4_1:+54069701 Msa0556040:CDS
GAAGATCTAGATGAGCAAAT+TGG 0.420249 4_1:+54073135 Msa0556040:CDS
GGATAGAAAGCTGAGGATTG+AGG 0.422156 4_1:+54073005 Msa0556040:CDS
ACTTACTGAAAATGAAGAAA+TGG 0.425998 4_1:-54068512 None:intergenic
TGTGTAGACCGGGAACTATT+GGG 0.428020 4_1:-54075213 None:intergenic
TCGGAGAAACCCACAATTTG+TGG 0.428486 4_1:+54068617 Msa0556040:CDS
TGGCGGTATAGCCGTTATAA+AGG 0.429730 4_1:+54071711 Msa0556040:CDS
TTATTTCTGTACAGATTGAC+AGG 0.431467 4_1:+54070642 Msa0556040:intron
ACCAGAGGTACACGTGGCTT+GGG 0.437428 4_1:-54074743 None:intergenic
GATTTGGGTCTTACACTTGA+AGG 0.439787 4_1:+54071502 Msa0556040:CDS
GCAGCTAATGCTGGAGTTGA+TGG 0.441043 4_1:+54074524 Msa0556040:CDS
TACCGAATGATATCTTCTTA+GGG 0.441126 4_1:-54068649 None:intergenic
AAGAGAAGTATTCCTGTTGA+AGG 0.446858 4_1:+54069867 Msa0556040:CDS
GCTGAAGCTATAGAGAAGAT+TGG 0.448331 4_1:+54070050 Msa0556040:CDS
CACGAAGCATAGGAACAATT+AGG 0.453661 4_1:+54074946 Msa0556040:three_prime_UTR
TAGGAACTTCAAAGTTACAT+AGG 0.459557 4_1:+54074965 Msa0556040:three_prime_UTR
TATCATTCGGTAAAGAATGC+AGG 0.460046 4_1:+54068660 Msa0556040:CDS
AAATCAATTGCAGCTAATGC+TGG 0.460888 4_1:+54074515 Msa0556040:CDS
TCCATGGAGTTCTTTATGGC+AGG 0.461420 4_1:-54073114 None:intergenic
ATTCGATGATGAATGTCCAT+TGG 0.461738 4_1:+54074827 Msa0556040:three_prime_UTR
GACCAGAGGTACACGTGGCT+TGG 0.462563 4_1:-54074744 None:intergenic
AAATCCTATTTCTCTGAAGA+AGG 0.464428 4_1:+54069803 Msa0556040:CDS
GCCATGACATATGCTTATAT+AGG 0.465541 4_1:+54075258 Msa0556040:three_prime_UTR
AACAAGAATGCTCTTATGAA+TGG 0.468016 4_1:+54074871 Msa0556040:three_prime_UTR
GCTTGTCGCACCACAAATTG+TGG 0.468224 4_1:-54068627 None:intergenic
TGAATTAGATACCTTTATAA+CGG 0.468547 4_1:-54071722 None:intergenic
CATTGGGTTGATTAGTACTT+GGG 0.476943 4_1:+54074844 Msa0556040:three_prime_UTR
ACCCAAGCCACGTGTACCTC+TGG 0.480505 4_1:+54074742 Msa0556040:CDS
GCAGGGATAATTTACAAGTC+GGG 0.480843 4_1:+54068678 Msa0556040:CDS
AGCCAAAATAATTGCAGTGC+TGG 0.482530 4_1:-54069736 None:intergenic
TTCGATGATGAATGTCCATT+GGG 0.482674 4_1:+54074828 Msa0556040:three_prime_UTR
TAGAGAAGATTGGATTTGAT+GGG 0.484021 4_1:+54070060 Msa0556040:CDS
ATGTCATGGCCTCAAGGAAA+AGG 0.488259 4_1:-54075245 None:intergenic
TAGACCATGCATCTAAGAAA+AGG 0.489392 4_1:-54075329 None:intergenic
TTAGCTGCAATTGATTTAGC+AGG 0.491114 4_1:-54074509 None:intergenic
ATCGGATACAATGCCATGAC+TGG 0.491599 4_1:+54074587 Msa0556040:CDS
AGAACATTTGACTGGAGAAT+CGG 0.495354 4_1:+54074569 Msa0556040:CDS
GAGAGAATTGCGAAACTCAC+TGG 0.501133 4_1:+54071691 Msa0556040:CDS
GCTGTAGCCTCGATTTCTGC+TGG 0.501335 4_1:+54069999 Msa0556040:intron
TCTCTGAGAGCTTTCTCGAA+TGG 0.502708 4_1:-54071672 None:intergenic
TTGCTCATCTAGATCTTCCA+TGG 0.508453 4_1:-54073130 None:intergenic
CTTTCATTGCAGTACCAAGC+TGG 0.512828 4_1:-54071537 None:intergenic
CAAGATATTGCGCTAATGAC+GGG 0.512997 4_1:+54070941 Msa0556040:CDS
CTTGTCGCACCACAAATTGT+GGG 0.513486 4_1:-54068626 None:intergenic
AGCCCTAAGAAGATATCATT+CGG 0.514048 4_1:+54068647 Msa0556040:CDS
GAGGTACTGAAATCTATTGA+AGG 0.514775 4_1:+54075179 Msa0556040:three_prime_UTR
GTCTAATTGATCAAACCTAA+AGG 0.521333 4_1:+54075347 Msa0556040:three_prime_UTR
TCCGATGCAATTGAGAATGC+TGG 0.522424 4_1:+54069553 Msa0556040:CDS
GAGGGACTTGTTCCTGGAGG+GGG 0.523820 4_1:+54073060 Msa0556040:CDS
GATGCTGTCTCTCTTACCGT+TGG 0.529324 4_1:+54068716 Msa0556040:CDS
TCCTATGCTTCGTGATACAT+GGG 0.533265 4_1:-54074937 None:intergenic
GGATAGACCAGTGTGTAGAC+CGG 0.534412 4_1:-54075224 None:intergenic
AGGAACTTCAAAGTTACATA+GGG 0.536839 4_1:+54074966 Msa0556040:three_prime_UTR
ATGAGGGACTTGTTCCTGGA+GGG 0.540906 4_1:+54073058 Msa0556040:CDS
ACAAGATATTGCGCTAATGA+CGG 0.542621 4_1:+54070940 Msa0556040:CDS
GCACATCTTGCAACTCGACT+AGG 0.544259 4_1:-54074647 None:intergenic
AAATGTCCAGGACTCGGAGA+TGG 0.545018 4_1:+54070902 Msa0556040:CDS
GAAGTATTCCTGTTGAAGGA+AGG 0.546321 4_1:+54069871 Msa0556040:CDS
TGCAGTCTCCATTGCTAGCG+TGG 0.548928 4_1:+54074679 Msa0556040:CDS
GTTGCTGTTTCTTACTCTTG+GGG 0.550639 4_1:+54074904 Msa0556040:three_prime_UTR
TGCTCCGCTCTTAATTATTG+CGG 0.552174 4_1:+54070805 Msa0556040:CDS
GCTGTAAAATGTCCAGGACT+CGG 0.553014 4_1:+54070896 Msa0556040:CDS
GTGTTAACCTTTGGGTCCAA+CGG 0.553155 4_1:-54068732 None:intergenic
GGACGTCACTGCACAAGTGT+TGG 0.553988 4_1:+54070829 Msa0556040:CDS
CCACGTGTACCTCTGGTCCC+TGG 0.554763 4_1:+54074749 Msa0556040:CDS
TGCAGGGATAATTTACAAGT+CGG 0.555799 4_1:+54068677 Msa0556040:CDS
TGGCAGGTATCAAGTCCAAA+AGG 0.555888 4_1:-54073098 None:intergenic
GTTGCAGCTGTAAAATGTCC+AGG 0.557223 4_1:+54070890 Msa0556040:CDS
AGAAGACTAGAACATTTGAC+TGG 0.559546 4_1:+54074561 Msa0556040:CDS
GATTTGGGAGGGAAGAAGAG+AGG 0.562495 4_1:-54068481 None:intergenic
TATTTCTCTGAAGAAGGGAA+TGG 0.563382 4_1:+54069809 Msa0556040:CDS
GTCCAAAAGGTGGACATATG+TGG 0.568776 4_1:-54073085 None:intergenic
ATTTGCTGATCCAAACACTA+AGG 0.569532 4_1:+54071588 Msa0556040:CDS
TCTCTTACCGTTGGACCCAA+AGG 0.570187 4_1:+54068725 Msa0556040:CDS
AAGTATTCCTGTTGAAGGAA+GGG 0.570813 4_1:+54069872 Msa0556040:CDS
ATCTTCATATGTGCCAGTCA+TGG 0.575331 4_1:-54074600 None:intergenic
ACCAGCATTCTCAATTGCAT+CGG 0.575986 4_1:-54069554 None:intergenic
TACCTCGAGATATTAGCAGC+TGG 0.576405 4_1:-54075162 None:intergenic
AGTTAGAACCACGCTAGCAA+TGG 0.576905 4_1:-54074687 None:intergenic
ATCATTCGGTAAAGAATGCA+GGG 0.577354 4_1:+54068661 Msa0556040:CDS
AGTAAAATGAATGATTTGGC+TGG 0.577859 4_1:+54069705 Msa0556040:CDS
GTTTAAGTGTGCCAGTGTCA+TGG 0.582934 4_1:+54075115 Msa0556040:three_prime_UTR
AATCCTATTTCTCTGAAGAA+GGG 0.583638 4_1:+54069804 Msa0556040:CDS
ATGAATGATTTGGCTGGTGA+TGG 0.584689 4_1:+54069711 Msa0556040:CDS
AAGCATATGTCATGGCCTCA+AGG 0.585767 4_1:-54075251 None:intergenic
GTCGACCTCTTGAATTAGCA+TGG 0.586694 4_1:-54069578 None:intergenic
ATGGAGAGAATCGATTTGGG+AGG 0.590425 4_1:-54068493 None:intergenic
TGGAGAGAATCGATTTGGGA+GGG 0.591617 4_1:-54068492 None:intergenic
ACCTGCCATAAAGAACTCCA+TGG 0.595150 4_1:+54073113 Msa0556040:CDS
GAGAGCAAATTCCATGACAC+TGG 0.600560 4_1:-54075126 None:intergenic
AAACTTAAAGTAATAAATGA+CGG 0.601769 4_1:+54069502 Msa0556040:CDS
ACCTATATAAGCATATGTCA+TGG 0.604116 4_1:-54075259 None:intergenic
TGAGGGACTTGTTCCTGGAG+GGG 0.606887 4_1:+54073059 Msa0556040:CDS
GAAGGAAGGGATCATATCAA+AGG 0.607458 4_1:+54069885 Msa0556040:CDS
TCCGCTCTTAATTATTGCGG+AGG 0.608855 4_1:+54070808 Msa0556040:CDS
GGAAGAAGAGAGGATGTGTG+AGG 0.608861 4_1:-54068471 None:intergenic
TCCTTACTTCATCACCAACC+AGG 0.611481 4_1:+54070676 Msa0556040:CDS
GATAGACCAGTGTGTAGACC+GGG 0.618597 4_1:-54075223 None:intergenic
TGGTGCTGATATTGTGGCGA+AGG 0.622265 4_1:+54073155 Msa0556040:CDS
TTAATAGTGAACAAAATGCA+AGG 0.624427 4_1:+54070857 Msa0556040:CDS
ACACACTGAGCTAGAACTTG+AGG 0.625418 4_1:+54072984 Msa0556040:CDS
AGAGAAGATTGGATTTGATG+GGG 0.625525 4_1:+54070061 Msa0556040:CDS
AGCATTGTCAAACTCCACAA+TGG 0.627191 4_1:-54070705 None:intergenic
GCAAATTGGTGCTGATATTG+TGG 0.629535 4_1:+54073149 Msa0556040:CDS
TATTTCTGTACAGATTGACA+GGG 0.629984 4_1:+54070643 Msa0556040:intron
GTCATTTCCAGCAGAAATCG+AGG 0.631622 4_1:-54070006 None:intergenic
TGGTGCCATGCTAATTCAAG+AGG 0.633716 4_1:+54069573 Msa0556040:CDS
ATAGTTCCCGGTCTACACAC+TGG 0.636775 4_1:+54075217 Msa0556040:three_prime_UTR
TCTTATGAATGGAAAAGTCA+CGG 0.641737 4_1:+54074882 Msa0556040:three_prime_UTR
GCTGGAAATGACGAGTATGT+TGG 0.642275 4_1:+54070017 Msa0556040:CDS
GGTACAACATCAGACCAGCT+TGG 0.642489 4_1:+54071523 Msa0556040:CDS
ACCCATGTATCACGAAGCAT+AGG 0.644738 4_1:+54074936 Msa0556040:three_prime_UTR
AGCCAGCTGCTAATATCTCG+AGG 0.658424 4_1:+54075160 Msa0556040:three_prime_UTR
CCAAGTACTAATCAACCCAA+TGG 0.670646 4_1:-54074843 None:intergenic
CAGGTATCAAGTCCAAAAGG+TGG 0.673351 4_1:-54073095 None:intergenic
GGAGTTATACCAGGGACCAG+AGG 0.684313 4_1:-54074758 None:intergenic
ATTTCTGTACAGATTGACAG+GGG 0.693379 4_1:+54070644 Msa0556040:intron
TCCTCCGCAATAATTAAGAG+CGG 0.695220 4_1:-54070809 None:intergenic
CCAGGGACCAGAGGTACACG+TGG 0.705754 4_1:-54074749 None:intergenic
AATGAGGGACTTGTTCCTGG+AGG 0.707403 4_1:+54073057 Msa0556040:CDS
AACTTGAGGATAGAAAGCTG+AGG 0.724054 4_1:+54072998 Msa0556040:CDS
AGAATTGCGAAACTCACTGG+CGG 0.733428 4_1:+54071694 Msa0556040:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTATGATGATAATAATT+AGG + chr4_1:54070147-54070166 Msa0556040:intron 10.0%
!! ATTTATGATGATAATAATTA+GGG + chr4_1:54070148-54070167 Msa0556040:intron 10.0%
!! AAAAAATTGCTATATTTATA+GGG - chr4_1:54070191-54070210 None:intergenic 10.0%
!! TAAAAAATTGCTATATTTAT+AGG - chr4_1:54070192-54070211 None:intergenic 10.0%
!!! ACATTTCATTTTATTTTTTA+GGG - chr4_1:54070222-54070241 None:intergenic 10.0%
!!! AACATTTCATTTTATTTTTT+AGG - chr4_1:54070223-54070242 None:intergenic 10.0%
!! AACATAATATGAATATATAA+AGG + chr4_1:54070318-54070337 Msa0556040:intron 10.0%
!!! ACAAAATAATTTTTTTTGTA+AGG + chr4_1:54070441-54070460 Msa0556040:intron 10.0%
!!! AACATTCAATTTTATTTTTT+AGG + chr4_1:54070469-54070488 Msa0556040:intron 10.0%
!!! ACATTCAATTTTATTTTTTA+GGG + chr4_1:54070470-54070489 Msa0556040:intron 10.0%
!! GAACTATTATTAAAATTATT+AGG - chr4_1:54070545-54070564 None:intergenic 10.0%
!!! AATTATTTTAATAAAGTCTA+TGG + chr4_1:54071046-54071065 Msa0556040:intron 10.0%
!! AAAGAAAAAAAAAAACAATT+TGG - chr4_1:54072385-54072404 None:intergenic 10.0%
!!! ATTTTATTAATTTTAGTTTC+TGG + chr4_1:54074333-54074352 Msa0556040:intron 10.0%
!! AAACTTAAAGTAATAAATGA+CGG + chr4_1:54069502-54069521 Msa0556040:CDS 15.0%
!!! CAATTTTTTTGTTTTAGTTT+TGG + chr4_1:54070253-54070272 Msa0556040:intron 15.0%
!! CAAAATTTGGTATATTTATA+AGG + chr4_1:54070501-54070520 Msa0556040:intron 15.0%
!! AAATGTTAAATGAAAACAAA+AGG - chr4_1:54071126-54071145 None:intergenic 15.0%
!!! TTTCATTTAACATTTTTAGT+TGG + chr4_1:54071131-54071150 Msa0556040:intron 15.0%
!!! TTGAATTTTGTTGTTTTATA+TGG + chr4_1:54071298-54071317 Msa0556040:intron 15.0%
!!! ATTTTTTTTTACTTAACTGT+TGG + chr4_1:54072273-54072292 Msa0556040:intron 15.0%
!! ATAAGTTATGATATAACAAT+AGG + chr4_1:54072574-54072593 Msa0556040:intron 15.0%
!!! TTTAGTAATTTATTTGCTTT+TGG - chr4_1:54072753-54072772 None:intergenic 15.0%
!!! ACAATAATTTTTTTTGAAGA+AGG - chr4_1:54073396-54073415 None:intergenic 15.0%
!!! AAATTGTTTTCTCTATTTTA+GGG - chr4_1:54074782-54074801 None:intergenic 15.0%
!! TATAAAATGAATCGATAAAA+TGG - chr4_1:54075018-54075037 None:intergenic 15.0%
!! AATTGAATAGAAGAAGAATT+AGG - chr4_1:54068760-54068779 None:intergenic 20.0%
!!! AAAAAGTTGTTTTATCAAGA+GGG - chr4_1:54068901-54068920 None:intergenic 20.0%
!!! AAAAAAGTTGTTTTATCAAG+AGG - chr4_1:54068902-54068921 None:intergenic 20.0%
!!! TCAAACATATAATTGTTGTT+TGG - chr4_1:54069344-54069363 None:intergenic 20.0%
!!! ATTTTCATCCATTTAATCTA+AGG - chr4_1:54069622-54069641 None:intergenic 20.0%
!! TGTCAAAATTATATCCATTA+GGG - chr4_1:54070280-54070299 None:intergenic 20.0%
!! ATGTCAAAATTATATCCATT+AGG - chr4_1:54070281-54070300 None:intergenic 20.0%
!! TAAAGGTTGAACATAATAAA+CGG + chr4_1:54070335-54070354 Msa0556040:intron 20.0%
!!! TAGAATTTTACAGATAAAGA+AGG + chr4_1:54071624-54071643 Msa0556040:CDS 20.0%
!! TGAATTAGATACCTTTATAA+CGG - chr4_1:54071725-54071744 None:intergenic 20.0%
!! AGTATTTCTTACTCTATTTA+AGG + chr4_1:54071818-54071837 Msa0556040:intron 20.0%
!!! AGATTTTATTAATTCAACCA+AGG + chr4_1:54071853-54071872 Msa0556040:intron 20.0%
!! TCTTTCTTATCTATTATTGT+AGG + chr4_1:54071939-54071958 Msa0556040:intron 20.0%
!! CTTTCTTATCTATTATTGTA+GGG + chr4_1:54071940-54071959 Msa0556040:intron 20.0%
!!! AAAATCTAAAACTCAACTAT+AGG + chr4_1:54072109-54072128 Msa0556040:intron 20.0%
!!! TTTATTTTTCACATTCACAA+TGG + chr4_1:54072461-54072480 Msa0556040:intron 20.0%
!!! AATTTTTTCATGGAAAGAAA+AGG - chr4_1:54073299-54073318 None:intergenic 20.0%
!!! TTTTCTTTCCATGAAAAAAT+TGG + chr4_1:54073298-54073317 Msa0556040:intron 20.0%
!! TTTCTTTCCATGAAAAAATT+GGG + chr4_1:54073299-54073318 Msa0556040:intron 20.0%
!! AAACATACCTCATTTATTTA+TGG + chr4_1:54073451-54073470 Msa0556040:intron 20.0%
!!! TGTATTTAAGATTTTAACCA+TGG + chr4_1:54073520-54073539 Msa0556040:intron 20.0%
!!! AAACGATAACTACATATTTT+TGG - chr4_1:54074006-54074025 None:intergenic 20.0%
!! AAAAATGACCAACATTTATT+GGG + chr4_1:54074284-54074303 Msa0556040:intron 20.0%
!!! GAAATTGTTTTCTCTATTTT+AGG - chr4_1:54074783-54074802 None:intergenic 20.0%
!! TTATTGACAATATCAGATAT+AGG - chr4_1:54075078-54075097 None:intergenic 20.0%
!! AAATTTATCAATTGACCTTT+AGG - chr4_1:54075365-54075384 None:intergenic 20.0%
! ACTTACTGAAAATGAAGAAA+TGG - chr4_1:54068515-54068534 None:intergenic 25.0%
!! AATTTCTTGCATTTTTGCTA+TGG + chr4_1:54068776-54068795 Msa0556040:intron 25.0%
!!! TTCATAAGTTATTTTCAGCT+TGG - chr4_1:54069019-54069038 None:intergenic 25.0%
! TATAAGTTCTTTCAGATTGT+CGG + chr4_1:54069057-54069076 Msa0556040:intron 25.0%
! TAAAATAAGTCAATCCAAAC+CGG + chr4_1:54069089-54069108 Msa0556040:intron 25.0%
! TTGAACGAAAATTGATCAAA+GGG - chr4_1:54069406-54069425 None:intergenic 25.0%
! AGAGATAAAATAAATGAGCA+CGG - chr4_1:54069443-54069462 None:intergenic 25.0%
!! TATTTTATCTCTTATTACGC+AGG + chr4_1:54069451-54069470 Msa0556040:intron 25.0%
! AATGTTATTCTTTCTGAATC+TGG + chr4_1:54069478-54069497 Msa0556040:CDS 25.0%
!!! TTTTTATTTTTCCTGCTTGT+AGG + chr4_1:54069677-54069696 Msa0556040:intron 25.0%
! TGCAAGTAAAATGAATGATT+TGG + chr4_1:54069701-54069720 Msa0556040:CDS 25.0%
! ACTAAAACAAAAAAATTGCG+AGG - chr4_1:54070251-54070270 None:intergenic 25.0%
! AAAGGTTGAACATAATAAAC+GGG + chr4_1:54070336-54070355 Msa0556040:intron 25.0%
! ACATTCAGATGAACATAAAT+TGG + chr4_1:54070402-54070421 Msa0556040:intron 25.0%
! TGAACATAAATTGGTCATTA+AGG + chr4_1:54070411-54070430 Msa0556040:intron 25.0%
! TAGGGACTAAAATCAAAATT+TGG + chr4_1:54070488-54070507 Msa0556040:intron 25.0%
! TTAATAGTGAACAAAATGCA+AGG + chr4_1:54070857-54070876 Msa0556040:CDS 25.0%
! ACAGTTGAAAAATGAGATAA+TGG - chr4_1:54071189-54071208 None:intergenic 25.0%
! AAATATAGTTGTTGCATTAC+TGG - chr4_1:54071572-54071591 None:intergenic 25.0%
!!! TGCAAAACATTTGCTTTTTT+TGG + chr4_1:54072031-54072050 Msa0556040:intron 25.0%
!! GAAGTGTTTATTAGCTTATT+TGG + chr4_1:54072493-54072512 Msa0556040:intron 25.0%
!! ACCCTAAGATTCAATTTTTA+CGG + chr4_1:54072681-54072700 Msa0556040:intron 25.0%
! ACCGTAAAAATTGAATCTTA+GGG - chr4_1:54072685-54072704 None:intergenic 25.0%
! AAAAAATATGTTGAGAATGC+AGG + chr4_1:54072708-54072727 Msa0556040:intron 25.0%
! TACTAAATTTAAGTGCTTTG+TGG + chr4_1:54072766-54072785 Msa0556040:intron 25.0%
! AAATTGTTGTGAAGAAACAA+TGG + chr4_1:54072858-54072877 Msa0556040:intron 25.0%
! AGAAAAAATATTCAGACGAT+CGG - chr4_1:54073220-54073239 None:intergenic 25.0%
!! TGAAATTTGCATATTTTGCA+AGG + chr4_1:54073336-54073355 Msa0556040:intron 25.0%
! TACAATCAACAAGAAGAATA+AGG - chr4_1:54073770-54073789 None:intergenic 25.0%
! CAAACTGAATTTATATTCCA+GGG - chr4_1:54073912-54073931 None:intergenic 25.0%
! TCTTAATGCAAACTTTAACA+TGG - chr4_1:54074087-54074106 None:intergenic 25.0%
! GAAAAATGACCAACATTTAT+TGG + chr4_1:54074283-54074302 Msa0556040:intron 25.0%
! GTCAATAATAAACTCCAATT+TGG + chr4_1:54075090-54075109 Msa0556040:three_prime_UTR 25.0%
TACCGAATGATATCTTCTTA+GGG - chr4_1:54068652-54068671 None:intergenic 30.0%
TTACCGAATGATATCTTCTT+AGG - chr4_1:54068653-54068672 None:intergenic 30.0%
!! ATTAGGAAGTGTTAACCTTT+GGG - chr4_1:54068743-54068762 None:intergenic 30.0%
!! AATTAGGAAGTGTTAACCTT+TGG - chr4_1:54068744-54068763 None:intergenic 30.0%
!!! TTTGCTATGGTTTGTTTTAC+TGG + chr4_1:54068789-54068808 Msa0556040:intron 30.0%
TAGCTTATAGAAACAGCTTA+TGG - chr4_1:54068977-54068996 None:intergenic 30.0%
ATAGGGTGAAAACAGTTTAT+GGG - chr4_1:54069220-54069239 None:intergenic 30.0%
AATAGGGTGAAAACAGTTTA+TGG - chr4_1:54069221-54069240 None:intergenic 30.0%
GCATATAGCACTTATATGAT+AGG + chr4_1:54069284-54069303 Msa0556040:intron 30.0%
AATTGAATCCCTATACTGTA+TGG + chr4_1:54069380-54069399 Msa0556040:intron 30.0%
GTTGAACGAAAATTGATCAA+AGG - chr4_1:54069407-54069426 None:intergenic 30.0%
AGGTTCTTCCTTAGATTAAA+TGG + chr4_1:54069611-54069630 Msa0556040:intron 30.0%
! AGTAAAATGAATGATTTGGC+TGG + chr4_1:54069705-54069724 Msa0556040:CDS 30.0%
! AAATCCTATTTCTCTGAAGA+AGG + chr4_1:54069803-54069822 Msa0556040:CDS 30.0%
! AATCCTATTTCTCTGAAGAA+GGG + chr4_1:54069804-54069823 Msa0556040:CDS 30.0%
GGAAAAGACAGTAAAAGATT+TGG + chr4_1:54069830-54069849 Msa0556040:CDS 30.0%
ATAGAGAAGATTGGATTTGA+TGG + chr4_1:54070059-54070078 Msa0556040:CDS 30.0%
TAGAGAAGATTGGATTTGAT+GGG + chr4_1:54070060-54070079 Msa0556040:CDS 30.0%
CTATAATAGGGAAAAACACA+GGG - chr4_1:54070612-54070631 None:intergenic 30.0%
AACAGACAACAGCTATAATA+GGG - chr4_1:54070624-54070643 None:intergenic 30.0%
TAACAGACAACAGCTATAAT+AGG - chr4_1:54070625-54070644 None:intergenic 30.0%
!! TTATTTCTGTACAGATTGAC+AGG + chr4_1:54070642-54070661 Msa0556040:intron 30.0%
! TATTTCTGTACAGATTGACA+GGG + chr4_1:54070643-54070662 Msa0556040:intron 30.0%
! GTTTGACAATGCTAAAGTTT+TGG + chr4_1:54070715-54070734 Msa0556040:CDS 30.0%
!! CAATGCTAAAGTTTTGGTAA+CGG + chr4_1:54070721-54070740 Msa0556040:CDS 30.0%
AAAATGTAAGCCTAGTATGA+AGG - chr4_1:54071015-54071034 None:intergenic 30.0%
! GGCTTACATTTTTCTATCTT+TGG + chr4_1:54071023-54071042 Msa0556040:intron 30.0%
CTGCAAAATAAGCAACTATT+TGG - chr4_1:54071078-54071097 None:intergenic 30.0%
!!! ACATTTTTAGTTGGACAGTA+TGG + chr4_1:54071140-54071159 Msa0556040:intron 30.0%
! TTTTATATGGTGTAACTGTG+TGG + chr4_1:54071311-54071330 Msa0556040:intron 30.0%
TTTATATGGTGTAACTGTGT+GGG + chr4_1:54071312-54071331 Msa0556040:intron 30.0%
!! AGAAGCAGTTGATAAGTAAA+GGG - chr4_1:54071796-54071815 None:intergenic 30.0%
!! AAGAAGCAGTTGATAAGTAA+AGG - chr4_1:54071797-54071816 None:intergenic 30.0%
TTAGTCATTTGACTAGCAAT+GGG - chr4_1:54071894-54071913 None:intergenic 30.0%
TTTAGTCATTTGACTAGCAA+TGG - chr4_1:54071895-54071914 None:intergenic 30.0%
! AAAAGCAAATGTTTTGCATG+TGG - chr4_1:54072029-54072048 None:intergenic 30.0%
! AAAAGTTCTTTTGCACTAGA+TGG - chr4_1:54072215-54072234 None:intergenic 30.0%
TCCAACAAAACCAATAACAA+AGG - chr4_1:54072299-54072318 None:intergenic 30.0%
!!! TTGTTATTGGTTTTGTTGGA+TGG + chr4_1:54072299-54072318 Msa0556040:intron 30.0%
ATAGCCTATACAAGAATCAA+GGG - chr4_1:54072354-54072373 None:intergenic 30.0%
AAGCAAGTCATTGTGTTAAA+TGG + chr4_1:54072412-54072431 Msa0556040:intron 30.0%
! ATTTTTCACATTCACAATGG+AGG + chr4_1:54072464-54072483 Msa0556040:intron 30.0%
! TAGTTTTCATAAGCCATCTT+GGG - chr4_1:54072631-54072650 None:intergenic 30.0%
AAATTGAATCTTAGGGTGAT+GGG - chr4_1:54072678-54072697 None:intergenic 30.0%
AAAATTGAATCTTAGGGTGA+TGG - chr4_1:54072679-54072698 None:intergenic 30.0%
CACCGTAAAAATTGAATCTT+AGG - chr4_1:54072686-54072705 None:intergenic 30.0%
TGCAATCAAGACATTTGAAA+AGG - chr4_1:54072839-54072858 None:intergenic 30.0%
GATAGTAGAAAATTCACTAG+AGG - chr4_1:54073257-54073276 None:intergenic 30.0%
AGAAAAGGCAACATAATACA+TGG - chr4_1:54073284-54073303 None:intergenic 30.0%
!!! AAACTCTCCCAATTTTTTCA+TGG - chr4_1:54073309-54073328 None:intergenic 30.0%
CATACCTCATTTATTTATGG+TGG + chr4_1:54073454-54073473 Msa0556040:intron 30.0%
TGTTCCACCATAAATAAATG+AGG - chr4_1:54073461-54073480 None:intergenic 30.0%
AGTCAAAATGTAAGAAACCA+TGG - chr4_1:54073540-54073559 None:intergenic 30.0%
TTTGACTGTACTTCATTGAA+TGG + chr4_1:54073553-54073572 Msa0556040:intron 30.0%
TTGACTGTACTTCATTGAAT+GGG + chr4_1:54073554-54073573 Msa0556040:intron 30.0%
!! GTCTTACTTTGCTATTTCTT+TGG + chr4_1:54073576-54073595 Msa0556040:intron 30.0%
AAAATACTAACGCTTGAGTA+GGG + chr4_1:54073650-54073669 Msa0556040:intron 30.0%
CCAAACTGAATTTATATTCC+AGG - chr4_1:54073913-54073932 None:intergenic 30.0%
CCTGGAATATAAATTCAGTT+TGG + chr4_1:54073910-54073929 Msa0556040:intron 30.0%
AATGCATGAAGCAATGATAT+AGG + chr4_1:54074155-54074174 Msa0556040:intron 30.0%
ATTGAGACTAACTTTGTGAA+AGG + chr4_1:54074406-54074425 Msa0556040:intron 30.0%
! TATGAAGATCTTTTGAATGC+TGG + chr4_1:54074614-54074633 Msa0556040:CDS 30.0%
TCTAACTACTCAAGCTATAT+TGG + chr4_1:54074703-54074722 Msa0556040:CDS 30.0%
!! TATTTTAGGGAGTTATACCA+GGG - chr4_1:54074769-54074788 None:intergenic 30.0%
!!! TTCAGTTTTGAAAACAGAGT+AGG + chr4_1:54074800-54074819 Msa0556040:three_prime_UTR 30.0%
AACAAGAATGCTCTTATGAA+TGG + chr4_1:54074871-54074890 Msa0556040:three_prime_UTR 30.0%
TCTTATGAATGGAAAAGTCA+CGG + chr4_1:54074882-54074901 Msa0556040:three_prime_UTR 30.0%
TAGGAACTTCAAAGTTACAT+AGG + chr4_1:54074965-54074984 Msa0556040:three_prime_UTR 30.0%
AGGAACTTCAAAGTTACATA+GGG + chr4_1:54074966-54074985 Msa0556040:three_prime_UTR 30.0%
ACCTATATAAGCATATGTCA+TGG - chr4_1:54075262-54075281 None:intergenic 30.0%
TTAAACTCTGCTTCAAAATC+AGG + chr4_1:54075297-54075316 Msa0556040:three_prime_UTR 30.0%
! TTATCCTTTTCTTAGATGCA+TGG + chr4_1:54075325-54075344 Msa0556040:three_prime_UTR 30.0%
GTCTAATTGATCAAACCTAA+AGG + chr4_1:54075347-54075366 Msa0556040:three_prime_UTR 30.0%
! GAAATGGAGAGAATCGATTT+GGG - chr4_1:54068499-54068518 None:intergenic 35.0%
AGAAATGGAGAGAATCGATT+TGG - chr4_1:54068500-54068519 None:intergenic 35.0%
AATAGTCAGACCAAAATGGA+CGG - chr4_1:54068578-54068597 None:intergenic 35.0%
AGCCCTAAGAAGATATCATT+CGG + chr4_1:54068647-54068666 Msa0556040:CDS 35.0%
TATCATTCGGTAAAGAATGC+AGG + chr4_1:54068660-54068679 Msa0556040:CDS 35.0%
ATCATTCGGTAAAGAATGCA+GGG + chr4_1:54068661-54068680 Msa0556040:CDS 35.0%
TGCAGGGATAATTTACAAGT+CGG + chr4_1:54068677-54068696 Msa0556040:CDS 35.0%
GGTAAGTGTTTGTTTGGATT+AGG - chr4_1:54068880-54068899 None:intergenic 35.0%
!! GCTGTTTCTATAAGCTATCT+TGG + chr4_1:54068980-54068999 Msa0556040:intron 35.0%
CAAACATGTTGTATGAGTCT+GGG - chr4_1:54069115-54069134 None:intergenic 35.0%
TTATCTCTTATTACGCAGGA+CGG + chr4_1:54069455-54069474 Msa0556040:intron 35.0%
! TACCAGCACTGCAATTATTT+TGG + chr4_1:54069734-54069753 Msa0556040:CDS 35.0%
!!! GATTATCAGCAGTTGCTTTT+GGG + chr4_1:54069778-54069797 Msa0556040:CDS 35.0%
!!! ATTATCAGCAGTTGCTTTTG+GGG + chr4_1:54069779-54069798 Msa0556040:CDS 35.0%
ATTCCCTTCTTCAGAGAAAT+AGG - chr4_1:54069810-54069829 None:intergenic 35.0%
! TATTTCTCTGAAGAAGGGAA+TGG + chr4_1:54069809-54069828 Msa0556040:CDS 35.0%
!! AAGAGAAGTATTCCTGTTGA+AGG + chr4_1:54069867-54069886 Msa0556040:CDS 35.0%
AAGTATTCCTGTTGAAGGAA+GGG + chr4_1:54069872-54069891 Msa0556040:CDS 35.0%
TGAAAAACTCAGACAAGCAT+TGG - chr4_1:54069924-54069943 None:intergenic 35.0%
AGAGAAGATTGGATTTGATG+GGG + chr4_1:54070061-54070080 Msa0556040:CDS 35.0%
!!! GTTTTAGTTTTGGTCCCTAA+TGG + chr4_1:54070263-54070282 Msa0556040:intron 35.0%
CATAATAAACGGGCATAACA+TGG + chr4_1:54070346-54070365 Msa0556040:intron 35.0%
GCTATAATAGGGAAAAACAC+AGG - chr4_1:54070613-54070632 None:intergenic 35.0%
ATTTCTGTACAGATTGACAG+GGG + chr4_1:54070644-54070663 Msa0556040:intron 35.0%
CAAAGAAATAGTTCCTTTGC+TGG + chr4_1:54070763-54070782 Msa0556040:CDS 35.0%
ACAAGATATTGCGCTAATGA+CGG + chr4_1:54070940-54070959 Msa0556040:CDS 35.0%
CCTACTGCATTTGATAAACT+CGG + chr4_1:54070970-54070989 Msa0556040:intron 35.0%
TTATATGGTGTAACTGTGTG+GGG + chr4_1:54071313-54071332 Msa0556040:intron 35.0%
GTGATATTAAAGTCAACAGG+AGG - chr4_1:54071460-54071479 None:intergenic 35.0%
CCTGTGATATTAAAGTCAAC+AGG - chr4_1:54071463-54071482 None:intergenic 35.0%
!! CCTGTTGACTTTAATATCAC+AGG + chr4_1:54071460-54071479 Msa0556040:intron 35.0%
TGACTTTAATATCACAGGTG+CGG + chr4_1:54071465-54071484 Msa0556040:intron 35.0%
! GATTTTCTCTGTGGAGATTT+GGG + chr4_1:54071487-54071506 Msa0556040:CDS 35.0%
! ATTTGCTGATCCAAACACTA+AGG + chr4_1:54071588-54071607 Msa0556040:CDS 35.0%
TGAATTTCAGCCTTAGTGTT+TGG - chr4_1:54071601-54071620 None:intergenic 35.0%
AAACACTAAGGCTGAAATTC+AGG + chr4_1:54071600-54071619 Msa0556040:CDS 35.0%
!! AGTTGATAAGTAAAGGGTCA+AGG - chr4_1:54071790-54071809 None:intergenic 35.0%
! GTTCTGAGTTCAATGACATT+GGG + chr4_1:54071962-54071981 Msa0556040:intron 35.0%
! GTGCAAAAGAACTTTTGTTG+TGG + chr4_1:54072219-54072238 Msa0556040:intron 35.0%
!! TAACTGTTGGCCTTTGTTAT+TGG + chr4_1:54072286-54072305 Msa0556040:intron 35.0%
!!! GCCTTTGTTATTGGTTTTGT+TGG + chr4_1:54072295-54072314 Msa0556040:intron 35.0%
GTATCCCTTGATTCTTGTAT+AGG + chr4_1:54072347-54072366 Msa0556040:intron 35.0%
CATAGCCTATACAAGAATCA+AGG - chr4_1:54072355-54072374 None:intergenic 35.0%
GTCATTGTGTTAAATGGAAC+TGG + chr4_1:54072418-54072437 Msa0556040:intron 35.0%
TTGTGTTAAATGGAACTGGA+TGG + chr4_1:54072422-54072441 Msa0556040:intron 35.0%
ACATTCACAATGGAGGAATT+TGG + chr4_1:54072471-54072490 Msa0556040:intron 35.0%
ATTTAATAAACCCCCCAAGA+TGG + chr4_1:54072615-54072634 Msa0556040:intron 35.0%
! AGTTTTCATAAGCCATCTTG+GGG - chr4_1:54072630-54072649 None:intergenic 35.0%
! GTAGTTTTCATAAGCCATCT+TGG - chr4_1:54072632-54072651 None:intergenic 35.0%
GATGCATTTACCAATTGTGT+AGG + chr4_1:54072954-54072973 Msa0556040:intron 35.0%
CATTTACCAATTGTGTAGGT+AGG + chr4_1:54072958-54072977 Msa0556040:intron 35.0%
! TACTTTTGCTGCCATAAATG+AGG + chr4_1:54073041-54073060 Msa0556040:CDS 35.0%
! ACTTTTGCTGCCATAAATGA+GGG + chr4_1:54073042-54073061 Msa0556040:CDS 35.0%
ATCTTCCATGGAGTTCTTTA+TGG - chr4_1:54073121-54073140 None:intergenic 35.0%
GAAGATCTAGATGAGCAAAT+TGG + chr4_1:54073135-54073154 Msa0556040:CDS 35.0%
AAAATATTCAGACGATCGGA+GGG - chr4_1:54073216-54073235 None:intergenic 35.0%
AAAAATATTCAGACGATCGG+AGG - chr4_1:54073217-54073236 None:intergenic 35.0%
GAAAATACTAACGCTTGAGT+AGG + chr4_1:54073649-54073668 Msa0556040:intron 35.0%
AAATACTAACGCTTGAGTAG+GGG + chr4_1:54073651-54073670 Msa0556040:intron 35.0%
AAACAACTGCAGATATGTTG+AGG - chr4_1:54073690-54073709 None:intergenic 35.0%
GTGTGAATCTATTCTATCGA+AGG - chr4_1:54073824-54073843 None:intergenic 35.0%
GGCATGAATCAGTTGAATTT+CGG - chr4_1:54073891-54073910 None:intergenic 35.0%
TTATCGTTTGATCCATTTCC+TGG + chr4_1:54074017-54074036 Msa0556040:intron 35.0%
AGAAACCACTGAATTATCCA+CGG + chr4_1:54074060-54074079 Msa0556040:intron 35.0%
!! TTAAAACCACGGTATTGACA+CGG - chr4_1:54074137-54074156 None:intergenic 35.0%
TGCTTCATGCATTAAAACCA+CGG - chr4_1:54074148-54074167 None:intergenic 35.0%
!!! TGGTCATTTTTCTCTCCTAA+GGG - chr4_1:54074275-54074294 None:intergenic 35.0%
!!! TTGGTCATTTTTCTCTCCTA+AGG - chr4_1:54074276-54074295 None:intergenic 35.0%
GCAAATAGCCCAATAAATGT+TGG - chr4_1:54074295-54074314 None:intergenic 35.0%
CATTTATTGGGCTATTTGCT+AGG + chr4_1:54074296-54074315 Msa0556040:intron 35.0%
TCAATCCTACAAGAAAAGGA+GGG - chr4_1:54074391-54074410 None:intergenic 35.0%
AGTCTCAATCCTACAAGAAA+AGG - chr4_1:54074395-54074414 None:intergenic 35.0%
! TTAGCTGCAATTGATTTAGC+AGG - chr4_1:54074512-54074531 None:intergenic 35.0%
AAATCAATTGCAGCTAATGC+TGG + chr4_1:54074515-54074534 Msa0556040:CDS 35.0%
AGAAGACTAGAACATTTGAC+TGG + chr4_1:54074561-54074580 Msa0556040:CDS 35.0%
AGAACATTTGACTGGAGAAT+CGG + chr4_1:54074569-54074588 Msa0556040:CDS 35.0%
!! CTATTTTAGGGAGTTATACC+AGG - chr4_1:54074770-54074789 None:intergenic 35.0%
ATTCGATGATGAATGTCCAT+TGG + chr4_1:54074827-54074846 Msa0556040:three_prime_UTR 35.0%
TTCGATGATGAATGTCCATT+GGG + chr4_1:54074828-54074847 Msa0556040:three_prime_UTR 35.0%
!! CATTGGGTTGATTAGTACTT+GGG + chr4_1:54074844-54074863 Msa0556040:three_prime_UTR 35.0%
ATAGGGAGTTGAATAGTGTT+AGG + chr4_1:54074983-54075002 Msa0556040:three_prime_UTR 35.0%
GCACACTTAAACATCCAAAT+TGG - chr4_1:54075107-54075126 None:intergenic 35.0%
!! GAGGTACTGAAATCTATTGA+AGG + chr4_1:54075179-54075198 Msa0556040:three_prime_UTR 35.0%
GCCATGACATATGCTTATAT+AGG + chr4_1:54075258-54075277 Msa0556040:three_prime_UTR 35.0%
TAGACCATGCATCTAAGAAA+AGG - chr4_1:54075332-54075351 None:intergenic 35.0%
GGTGAATAGTCAGACCAAAA+TGG - chr4_1:54068582-54068601 None:intergenic 40.0%
GCAGGGATAATTTACAAGTC+GGG + chr4_1:54068678-54068697 Msa0556040:CDS 40.0%
CAAGAGGGTAAGTGTTTGTT+TGG - chr4_1:54068886-54068905 None:intergenic 40.0%
CCAAACATGTTGTATGAGTC+TGG - chr4_1:54069116-54069135 None:intergenic 40.0%
CCAGACTCATACAACATGTT+TGG + chr4_1:54069113-54069132 Msa0556040:intron 40.0%
CTCTTAAACACTCTCACAAG+TGG - chr4_1:54069171-54069190 None:intergenic 40.0%
TTTCATAAGCTATCCCAGAG+AGG - chr4_1:54069254-54069273 None:intergenic 40.0%
TCAAAGGGCCATACAGTATA+GGG - chr4_1:54069391-54069410 None:intergenic 40.0%
ATCAAAGGGCCATACAGTAT+AGG - chr4_1:54069392-54069411 None:intergenic 40.0%
AATTGCATCGGAAAGCTCTA+TGG - chr4_1:54069545-54069564 None:intergenic 40.0%
ACCAGCATTCTCAATTGCAT+CGG - chr4_1:54069557-54069576 None:intergenic 40.0%
AAGGAAGAACCTAACAACCA+TGG - chr4_1:54069603-54069622 None:intergenic 40.0%
TTTACTTGCAACCTACAAGC+AGG - chr4_1:54069691-54069710 None:intergenic 40.0%
! ATGAATGATTTGGCTGGTGA+TGG + chr4_1:54069711-54069730 Msa0556040:CDS 40.0%
AGCCAAAATAATTGCAGTGC+TGG - chr4_1:54069739-54069758 None:intergenic 40.0%
!! GGATTATCAGCAGTTGCTTT+TGG + chr4_1:54069777-54069796 Msa0556040:CDS 40.0%
! GAAGTATTCCTGTTGAAGGA+AGG + chr4_1:54069871-54069890 Msa0556040:CDS 40.0%
ATATGATCCCTTCCTTCAAC+AGG - chr4_1:54069882-54069901 None:intergenic 40.0%
GAAGGAAGGGATCATATCAA+AGG + chr4_1:54069885-54069904 Msa0556040:CDS 40.0%
GCTGAAGCTATAGAGAAGAT+TGG + chr4_1:54070050-54070069 Msa0556040:CDS 40.0%
ACCTCTGTGGTAATTGAAGA+AGG + chr4_1:54070116-54070135 Msa0556040:intron 40.0%
CCTCTGTGGTAATTGAAGAA+GGG + chr4_1:54070117-54070136 Msa0556040:intron 40.0%
GGTAATTGAAGAAGGGATGA+AGG + chr4_1:54070124-54070143 Msa0556040:intron 40.0%
GGACATGATCATTCAGATCT+GGG - chr4_1:54070591-54070610 None:intergenic 40.0%
!! CACAATGGATTTTTCCTGGT+TGG - chr4_1:54070693-54070712 None:intergenic 40.0%
CAACCAGGAAAAATCCATTG+TGG + chr4_1:54070691-54070710 Msa0556040:CDS 40.0%
!! ACTCCACAATGGATTTTTCC+TGG - chr4_1:54070697-54070716 None:intergenic 40.0%
AGCATTGTCAAACTCCACAA+TGG - chr4_1:54070708-54070727 None:intergenic 40.0%
!! TGCATAGCTTTTTCCAGCAA+AGG - chr4_1:54070779-54070798 None:intergenic 40.0%
TGCTCCGCTCTTAATTATTG+CGG + chr4_1:54070805-54070824 Msa0556040:CDS 40.0%
TCCTCCGCAATAATTAAGAG+CGG - chr4_1:54070812-54070831 None:intergenic 40.0%
CAAGATATTGCGCTAATGAC+GGG + chr4_1:54070941-54070960 Msa0556040:CDS 40.0%
CCGAGTTTATCAAATGCAGT+AGG - chr4_1:54070973-54070992 None:intergenic 40.0%
CAAGATTACAATCCACCTAG+CGG + chr4_1:54071223-54071242 Msa0556040:intron 40.0%
CGTCAGTTGACTGTTAATAG+AGG + chr4_1:54071258-54071277 Msa0556040:intron 40.0%
TATATGGTGTAACTGTGTGG+GGG + chr4_1:54071314-54071333 Msa0556040:intron 40.0%
CATGGGAACAAAGACATTTG+AGG - chr4_1:54071365-54071384 None:intergenic 40.0%
TACGATTCGTTGCAAGACAT+GGG - chr4_1:54071382-54071401 None:intergenic 40.0%
ATACGATTCGTTGCAAGACA+TGG - chr4_1:54071383-54071402 None:intergenic 40.0%
ATGTCTTGCAACGAATCGTA+TGG + chr4_1:54071382-54071401 Msa0556040:intron 40.0%
AACACATTTCCAGCTTTGCT+TGG + chr4_1:54071430-54071449 Msa0556040:intron 40.0%
! GGATTTTCTCTGTGGAGATT+TGG + chr4_1:54071486-54071505 Msa0556040:CDS 40.0%
GATTTGGGTCTTACACTTGA+AGG + chr4_1:54071502-54071521 Msa0556040:CDS 40.0%
ACATACATGTCCTGTCATCA+TGG + chr4_1:54071745-54071764 Msa0556040:intron 40.0%
CATACATGTCCTGTCATCAT+GGG + chr4_1:54071746-54071765 Msa0556040:intron 40.0%
!! GGTTCTGAGTTCAATGACAT+TGG + chr4_1:54071961-54071980 Msa0556040:intron 40.0%
! TCTTTTGCACTAGATGGAGT+TGG - chr4_1:54072209-54072228 None:intergenic 40.0%
! TTTTCATAAGCCATCTTGGG+GGG - chr4_1:54072628-54072647 None:intergenic 40.0%
! GTTTTCATAAGCCATCTTGG+GGG - chr4_1:54072629-54072648 None:intergenic 40.0%
ACAAAGAGGGAACAGCTTAT+GGG - chr4_1:54072654-54072673 None:intergenic 40.0%
AACAAAGAGGGAACAGCTTA+TGG - chr4_1:54072655-54072674 None:intergenic 40.0%
AACTTGAGGATAGAAAGCTG+AGG + chr4_1:54072998-54073017 Msa0556040:CDS 40.0%
AGGAACAAGTCCCTCATTTA+TGG - chr4_1:54073055-54073074 None:intergenic 40.0%
! ATAAATGAGGGACTTGTTCC+TGG + chr4_1:54073054-54073073 Msa0556040:CDS 40.0%
TTGCTCATCTAGATCTTCCA+TGG - chr4_1:54073133-54073152 None:intergenic 40.0%
!! GCAAATTGGTGCTGATATTG+TGG + chr4_1:54073149-54073168 Msa0556040:CDS 40.0%
AAATATTCAGACGATCGGAG+GGG - chr4_1:54073215-54073234 None:intergenic 40.0%
!! TATTCTTCCCCTGCTACTTT+AGG + chr4_1:54073737-54073756 Msa0556040:intron 40.0%
!! ATTCTTCCCCTGCTACTTTA+GGG + chr4_1:54073738-54073757 Msa0556040:intron 40.0%
CTTATTCCCTAAAGTAGCAG+GGG - chr4_1:54073747-54073766 None:intergenic 40.0%
GCTTATTCCCTAAAGTAGCA+GGG - chr4_1:54073748-54073767 None:intergenic 40.0%
! AATTCAACTGATTCATGCCC+TGG + chr4_1:54073892-54073911 Msa0556040:intron 40.0%
!! GCTTGAGATTCTAGAGTACT+TGG - chr4_1:54073968-54073987 None:intergenic 40.0%
TGGTTTCTCCATCTACAATG+TGG - chr4_1:54074048-54074067 None:intergenic 40.0%
!! TAAAACCACGGTATTGACAC+GGG - chr4_1:54074136-54074155 None:intergenic 40.0%
! TTTTTCTCTCCTAAGGGACA+GGG - chr4_1:54074269-54074288 None:intergenic 40.0%
! ATTTTTCTCTCCTAAGGGAC+AGG - chr4_1:54074270-54074289 None:intergenic 40.0%
! TTTTCCCCTCCTTTTCTTGT+AGG + chr4_1:54074383-54074402 Msa0556040:intron 40.0%
CAATCCTACAAGAAAAGGAG+GGG - chr4_1:54074390-54074409 None:intergenic 40.0%
CTCAATCCTACAAGAAAAGG+AGG - chr4_1:54074392-54074411 None:intergenic 40.0%
AGTTGTGCATGAATCATTGC+AGG + chr4_1:54074475-54074494 Msa0556040:intron 40.0%
ATCTTCATATGTGCCAGTCA+TGG - chr4_1:54074603-54074622 None:intergenic 40.0%
CCAAGTACTAATCAACCCAA+TGG - chr4_1:54074846-54074865 None:intergenic 40.0%
!! CCATTGGGTTGATTAGTACT+TGG + chr4_1:54074843-54074862 Msa0556040:three_prime_UTR 40.0%
!! GGTTGCTGTTTCTTACTCTT+GGG + chr4_1:54074903-54074922 Msa0556040:three_prime_UTR 40.0%
!! GTTGCTGTTTCTTACTCTTG+GGG + chr4_1:54074904-54074923 Msa0556040:three_prime_UTR 40.0%
TCCTATGCTTCGTGATACAT+GGG - chr4_1:54074940-54074959 None:intergenic 40.0%
TTCCTATGCTTCGTGATACA+TGG - chr4_1:54074941-54074960 None:intergenic 40.0%
CACGAAGCATAGGAACAATT+AGG + chr4_1:54074946-54074965 Msa0556040:three_prime_UTR 40.0%
TATCATCTCCCAATAGTTCC+CGG + chr4_1:54075205-54075224 Msa0556040:three_prime_UTR 40.0%
!! TGGAGAGAATCGATTTGGGA+GGG - chr4_1:54068495-54068514 None:intergenic 45.0%
!! ATGGAGAGAATCGATTTGGG+AGG - chr4_1:54068496-54068515 None:intergenic 45.0%
! CACCGTTTCAGTCTTTTCGT+CGG + chr4_1:54068598-54068617 Msa0556040:intron 45.0%
CTCCGACGAAAAGACTGAAA+CGG - chr4_1:54068603-54068622 None:intergenic 45.0%
TCGGAGAAACCCACAATTTG+TGG + chr4_1:54068617-54068636 Msa0556040:CDS 45.0%
CTTGTCGCACCACAAATTGT+GGG - chr4_1:54068629-54068648 None:intergenic 45.0%
GTGTTAACCTTTGGGTCCAA+CGG - chr4_1:54068735-54068754 None:intergenic 45.0%
GAGAGGAGCTTGTCGAAATA+GGG - chr4_1:54069237-54069256 None:intergenic 45.0%
AGAGAGGAGCTTGTCGAAAT+AGG - chr4_1:54069238-54069257 None:intergenic 45.0%
TATTTCGACAAGCTCCTCTC+TGG + chr4_1:54069237-54069256 Msa0556040:intron 45.0%
ATTTCGACAAGCTCCTCTCT+GGG + chr4_1:54069238-54069257 Msa0556040:intron 45.0%
TCCGATGCAATTGAGAATGC+TGG + chr4_1:54069553-54069572 Msa0556040:CDS 45.0%
!! TGGTGCCATGCTAATTCAAG+AGG + chr4_1:54069573-54069592 Msa0556040:CDS 45.0%
GTCGACCTCTTGAATTAGCA+TGG - chr4_1:54069581-54069600 None:intergenic 45.0%
CTAATTCAAGAGGTCGACCA+TGG + chr4_1:54069583-54069602 Msa0556040:intron 45.0%
GCTCGCGCTATGATTAAATC+TGG + chr4_1:54069756-54069775 Msa0556040:CDS 45.0%
GTCATTTCCAGCAGAAATCG+AGG - chr4_1:54070009-54070028 None:intergenic 45.0%
GCTGGAAATGACGAGTATGT+TGG + chr4_1:54070017-54070036 Msa0556040:CDS 45.0%
AGATGATGAGGATGACTCGA+TGG - chr4_1:54070093-54070112 None:intergenic 45.0%
CACAGAGGTTTCAGATGATG+AGG - chr4_1:54070105-54070124 None:intergenic 45.0%
! CTCATCATCTGAAACCTCTG+TGG + chr4_1:54070103-54070122 Msa0556040:intron 45.0%
CCCTTCTTCAATTACCACAG+AGG - chr4_1:54070120-54070139 None:intergenic 45.0%
GGGACATGATCATTCAGATC+TGG - chr4_1:54070592-54070611 None:intergenic 45.0%
TCCTTACTTCATCACCAACC+AGG + chr4_1:54070676-54070695 Msa0556040:CDS 45.0%
!! TCCTGGTTGGTGATGAAGTA+AGG - chr4_1:54070680-54070699 None:intergenic 45.0%
TCCGCTCTTAATTATTGCGG+AGG + chr4_1:54070808-54070827 Msa0556040:CDS 45.0%
GTTGCAGCTGTAAAATGTCC+AGG + chr4_1:54070890-54070909 Msa0556040:CDS 45.0%
GCTGTAAAATGTCCAGGACT+CGG + chr4_1:54070896-54070915 Msa0556040:CDS 45.0%
AAGCCTAGTATGAAGGAAGC+TGG - chr4_1:54071008-54071027 None:intergenic 45.0%
TTGGACAGTATGGCTGTCTT+GGG + chr4_1:54071150-54071169 Msa0556040:intron 45.0%
!! CGCTAGGTGGATTGTAATCT+TGG - chr4_1:54071225-54071244 None:intergenic 45.0%
TACTGAAACAATCCGCTAGG+TGG - chr4_1:54071238-54071257 None:intergenic 45.0%
ACGTACTGAAACAATCCGCT+AGG - chr4_1:54071241-54071260 None:intergenic 45.0%
CTTTCATTGCAGTACCAAGC+TGG - chr4_1:54071540-54071559 None:intergenic 45.0%
! TCTCTGAGAGCTTTCTCGAA+TGG - chr4_1:54071675-54071694 None:intergenic 45.0%
GAGAGAATTGCGAAACTCAC+TGG + chr4_1:54071691-54071710 Msa0556040:CDS 45.0%
AGAATTGCGAAACTCACTGG+CGG + chr4_1:54071694-54071713 Msa0556040:CDS 45.0%
TGGCGGTATAGCCGTTATAA+AGG + chr4_1:54071711-54071730 Msa0556040:CDS 45.0%
GGGTCAAGGTGATCAGAATA+AGG - chr4_1:54071776-54071795 None:intergenic 45.0%
ATTCAACCAAGGACCGAAGA+AGG + chr4_1:54071864-54071883 Msa0556040:intron 45.0%
AGCAATGGGACATCCTTCTT+CGG - chr4_1:54071880-54071899 None:intergenic 45.0%
ACTAGCAACATTCTTGCGTG+AGG + chr4_1:54072060-54072079 Msa0556040:intron 45.0%
CTAGCAACATTCTTGCGTGA+GGG + chr4_1:54072061-54072080 Msa0556040:intron 45.0%
AACATTCTTGCGTGAGGGTT+TGG + chr4_1:54072066-54072085 Msa0556040:intron 45.0%
!! TAGGGTGATGGGAACAAAGA+GGG - chr4_1:54072667-54072686 None:intergenic 45.0%
!! TTAGGGTGATGGGAACAAAG+AGG - chr4_1:54072668-54072687 None:intergenic 45.0%
TGTGCACCTACCTACACAAT+TGG - chr4_1:54072967-54072986 None:intergenic 45.0%
ACACACTGAGCTAGAACTTG+AGG + chr4_1:54072984-54073003 Msa0556040:CDS 45.0%
GGATAGAAAGCTGAGGATTG+AGG + chr4_1:54073005-54073024 Msa0556040:CDS 45.0%
! TGCCACATATGTCCACCTTT+TGG + chr4_1:54073083-54073102 Msa0556040:CDS 45.0%
GTCCAAAAGGTGGACATATG+TGG - chr4_1:54073088-54073107 None:intergenic 45.0%
CAGGTATCAAGTCCAAAAGG+TGG - chr4_1:54073098-54073117 None:intergenic 45.0%
TGGCAGGTATCAAGTCCAAA+AGG - chr4_1:54073101-54073120 None:intergenic 45.0%
ACCTGCCATAAAGAACTCCA+TGG + chr4_1:54073113-54073132 Msa0556040:CDS 45.0%
TCCATGGAGTTCTTTATGGC+AGG - chr4_1:54073117-54073136 None:intergenic 45.0%
GGCTTATTCCCTAAAGTAGC+AGG - chr4_1:54073749-54073768 None:intergenic 45.0%
CGTTTGATCCATTTCCTGGA+TGG + chr4_1:54074021-54074040 Msa0556040:intron 45.0%
AATGTGGACCATCCAGGAAA+TGG - chr4_1:54074032-54074051 None:intergenic 45.0%
ATCTACAATGTGGACCATCC+AGG - chr4_1:54074038-54074057 None:intergenic 45.0%
TGGATGGTCCACATTGTAGA+TGG + chr4_1:54074037-54074056 Msa0556040:intron 45.0%
ATGGACCGTGGATAATTCAG+TGG - chr4_1:54074068-54074087 None:intergenic 45.0%
GCAAACTTTAACATGGACCG+TGG - chr4_1:54074080-54074099 None:intergenic 45.0%
!! AAAACCACGGTATTGACACG+GGG - chr4_1:54074135-54074154 None:intergenic 45.0%
TAACTCAGATGCAAACACGC+AGG - chr4_1:54074233-54074252 None:intergenic 45.0%
ATCGGATACAATGCCATGAC+TGG + chr4_1:54074587-54074606 Msa0556040:CDS 45.0%
AGTTAGAACCACGCTAGCAA+TGG - chr4_1:54074690-54074709 None:intergenic 45.0%
!! CGGTTGCTGTTTCTTACTCT+TGG + chr4_1:54074902-54074921 Msa0556040:three_prime_UTR 45.0%
ACCCATGTATCACGAAGCAT+AGG + chr4_1:54074936-54074955 Msa0556040:three_prime_UTR 45.0%
GTTTAAGTGTGCCAGTGTCA+TGG + chr4_1:54075115-54075134 Msa0556040:three_prime_UTR 45.0%
GAGAGCAAATTCCATGACAC+TGG - chr4_1:54075129-54075148 None:intergenic 45.0%
TACCTCGAGATATTAGCAGC+TGG - chr4_1:54075165-54075184 None:intergenic 45.0%
TGTGTAGACCGGGAACTATT+GGG - chr4_1:54075216-54075235 None:intergenic 45.0%
! CTGGTCTATCCTTTTCCTTG+AGG + chr4_1:54075236-54075255 Msa0556040:three_prime_UTR 45.0%
ATGTCATGGCCTCAAGGAAA+AGG - chr4_1:54075248-54075267 None:intergenic 45.0%
AAGCATATGTCATGGCCTCA+AGG - chr4_1:54075254-54075273 None:intergenic 45.0%
!!! AAAAAAAATTATTTTGTTTT+TGG - chr4_1:54070438-54070457 None:intergenic 5.0%
!! AACTATTATTAAAATTATTA+GGG - chr4_1:54070544-54070563 None:intergenic 5.0%
GGAAGAAGAGAGGATGTGTG+AGG - chr4_1:54068474-54068493 None:intergenic 50.0%
GATTTGGGAGGGAAGAAGAG+AGG - chr4_1:54068484-54068503 None:intergenic 50.0%
! TCACTTCGCTCCGTCCATTT+TGG + chr4_1:54068565-54068584 Msa0556040:intron 50.0%
GCTTGTCGCACCACAAATTG+TGG - chr4_1:54068630-54068649 None:intergenic 50.0%
GATGCTGTCTCTCTTACCGT+TGG + chr4_1:54068716-54068735 Msa0556040:CDS 50.0%
TCTCTTACCGTTGGACCCAA+AGG + chr4_1:54068725-54068744 Msa0556040:CDS 50.0%
CATGTTGTATGAGTCTGGGC+CGG - chr4_1:54069111-54069130 None:intergenic 50.0%
AGAGGTCGACCATGGTTGTT+AGG + chr4_1:54069591-54069610 Msa0556040:intron 50.0%
AAATGTCCAGGACTCGGAGA+TGG + chr4_1:54070902-54070921 Msa0556040:CDS 50.0%
TTCTTTCCATCTCCGAGTCC+TGG - chr4_1:54070911-54070930 None:intergenic 50.0%
CTGCCAGCTTCCTTCATACT+AGG + chr4_1:54071002-54071021 Msa0556040:intron 50.0%
GTTGGACAGTATGGCTGTCT+TGG + chr4_1:54071149-54071168 Msa0556040:intron 50.0%
! ACAGGTGCGGATTTTCTCTG+TGG + chr4_1:54071478-54071497 Msa0556040:intron 50.0%
GGTACAACATCAGACCAGCT+TGG + chr4_1:54071523-54071542 Msa0556040:CDS 50.0%
TAAGGACAGCCCATGATGAC+AGG - chr4_1:54071758-54071777 None:intergenic 50.0%
! AATGAGGGACTTGTTCCTGG+AGG + chr4_1:54073057-54073076 Msa0556040:CDS 50.0%
! ATGAGGGACTTGTTCCTGGA+GGG + chr4_1:54073058-54073077 Msa0556040:CDS 50.0%
!! TGGTGCTGATATTGTGGCGA+AGG + chr4_1:54073155-54073174 Msa0556040:CDS 50.0%
!! AAACCACGGTATTGACACGG+GGG - chr4_1:54074134-54074153 None:intergenic 50.0%
CTTTGATTACAGCTCCCCTC+TGG + chr4_1:54074184-54074203 Msa0556040:intron 50.0%
AGGGACAGGGTTAGGCTATA+TGG - chr4_1:54074256-54074275 None:intergenic 50.0%
ATAGCCTAACCCTGTCCCTT+AGG + chr4_1:54074257-54074276 Msa0556040:intron 50.0%
GCAGCTAATGCTGGAGTTGA+TGG + chr4_1:54074524-54074543 Msa0556040:CDS 50.0%
GCACATCTTGCAACTCGACT+AGG - chr4_1:54074650-54074669 None:intergenic 50.0%
AGCCAGCTGCTAATATCTCG+AGG + chr4_1:54075160-54075179 Msa0556040:three_prime_UTR 50.0%
GTGTGTAGACCGGGAACTAT+TGG - chr4_1:54075217-54075236 None:intergenic 50.0%
ATAGTTCCCGGTCTACACAC+TGG + chr4_1:54075217-54075236 Msa0556040:three_prime_UTR 50.0%
GATAGACCAGTGTGTAGACC+GGG - chr4_1:54075226-54075245 None:intergenic 50.0%
GGATAGACCAGTGTGTAGAC+CGG - chr4_1:54075227-54075246 None:intergenic 50.0%
ATGGACGGAGCGAAGTGAGA+GGG - chr4_1:54068563-54068582 None:intergenic 55.0%
AATGGACGGAGCGAAGTGAG+AGG - chr4_1:54068564-54068583 None:intergenic 55.0%
TGTATGAGTCTGGGCCGGTT+TGG - chr4_1:54069106-54069125 None:intergenic 55.0%
AGGCTACAGCTGCACAAGGT+GGG - chr4_1:54069989-54070008 None:intergenic 55.0%
ATCGAGGCTACAGCTGCACA+AGG - chr4_1:54069993-54070012 None:intergenic 55.0%
GCTGTAGCCTCGATTTCTGC+TGG + chr4_1:54069999-54070018 Msa0556040:intron 55.0%
GGACGTCACTGCACAAGTGT+TGG + chr4_1:54070829-54070848 Msa0556040:CDS 55.0%
GGAGGTCAACCAAGCAAAGC+TGG - chr4_1:54071442-54071461 None:intergenic 55.0%
GGACATCCTTCTTCGGTCCT+TGG - chr4_1:54071873-54071892 None:intergenic 55.0%
! TGAGGGACTTGTTCCTGGAG+GGG + chr4_1:54073059-54073078 Msa0556040:CDS 55.0%
ATACCCCTCAGTTGCCAGAG+GGG - chr4_1:54074201-54074220 None:intergenic 55.0%
CATACCCCTCAGTTGCCAGA+GGG - chr4_1:54074202-54074221 None:intergenic 55.0%
ACATACCCCTCAGTTGCCAG+AGG - chr4_1:54074203-54074222 None:intergenic 55.0%
CTCTCCTAAGGGACAGGGTT+AGG - chr4_1:54074264-54074283 None:intergenic 55.0%
TGCAGTCTCCATTGCTAGCG+TGG + chr4_1:54074679-54074698 Msa0556040:CDS 55.0%
! ACCAGAGGTACACGTGGCTT+GGG - chr4_1:54074746-54074765 None:intergenic 55.0%
GGAGTTATACCAGGGACCAG+AGG - chr4_1:54074761-54074780 None:intergenic 55.0%
TGGACGGAGCGAAGTGAGAG+GGG - chr4_1:54068562-54068581 None:intergenic 60.0%
GGCTACAGCTGCACAAGGTG+GGG - chr4_1:54069988-54070007 None:intergenic 60.0%
GAGGCTACAGCTGCACAAGG+TGG - chr4_1:54069990-54070009 None:intergenic 60.0%
! GAGGGACTTGTTCCTGGAGG+GGG + chr4_1:54073060-54073079 Msa0556040:CDS 60.0%
ACATATGTGGCACCCCCTCC+AGG - chr4_1:54073075-54073094 None:intergenic 60.0%
CACGGGGGAGGAAGGATGAA+TGG - chr4_1:54074119-54074138 None:intergenic 60.0%
!! GGTATTGACACGGGGGAGGA+AGG - chr4_1:54074127-54074146 None:intergenic 60.0%
AGCTCCCCTCTGGCAACTGA+GGG + chr4_1:54074194-54074213 Msa0556040:intron 60.0%
ACCCAAGCCACGTGTACCTC+TGG + chr4_1:54074742-54074761 Msa0556040:CDS 60.0%
! GACCAGAGGTACACGTGGCT+TGG - chr4_1:54074747-54074766 None:intergenic 60.0%
!! CCACGGTATTGACACGGGGG+AGG - chr4_1:54074131-54074150 None:intergenic 65.0%
CCTCCCCCGTGTCAATACCG+TGG + chr4_1:54074128-54074147 Msa0556040:intron 65.0%
CAGCTCCCCTCTGGCAACTG+AGG + chr4_1:54074193-54074212 Msa0556040:intron 65.0%
GCTCCCCTCTGGCAACTGAG+GGG + chr4_1:54074195-54074214 Msa0556040:intron 65.0%
! CCAGGGACCAGAGGTACACG+TGG - chr4_1:54074752-54074771 None:intergenic 65.0%
CCACGTGTACCTCTGGTCCC+TGG + chr4_1:54074749-54074768 Msa0556040:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 54068459 54075414 54068459 ID=Msa0556040;Name=Msa0556040
chr4_1 mRNA 54068459 54075414 54068459 ID=Msa0556040-mRNA-1;Parent=Msa0556040;Name=Msa0556040-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.87|0.77|1|0.87|0.88|9|630|555
chr4_1 exon 54068459 54068528 54068459 ID=Msa0556040-mRNA-1:exon:15831;Parent=Msa0556040-mRNA-1
chr4_1 exon 54068609 54068746 54068609 ID=Msa0556040-mRNA-1:exon:15832;Parent=Msa0556040-mRNA-1
chr4_1 exon 54069473 54069594 54069473 ID=Msa0556040-mRNA-1:exon:15833;Parent=Msa0556040-mRNA-1
chr4_1 exon 54069699 54069906 54069699 ID=Msa0556040-mRNA-1:exon:15834;Parent=Msa0556040-mRNA-1
chr4_1 exon 54070000 54070082 54070000 ID=Msa0556040-mRNA-1:exon:15835;Parent=Msa0556040-mRNA-1
chr4_1 exon 54070656 54070962 54070656 ID=Msa0556040-mRNA-1:exon:15836;Parent=Msa0556040-mRNA-1
chr4_1 exon 54071482 54071732 54071482 ID=Msa0556040-mRNA-1:exon:15837;Parent=Msa0556040-mRNA-1
chr4_1 exon 54072976 54073176 54072976 ID=Msa0556040-mRNA-1:exon:15838;Parent=Msa0556040-mRNA-1
chr4_1 exon 54074497 54075414 54074497 ID=Msa0556040-mRNA-1:exon:15839;Parent=Msa0556040-mRNA-1
chr4_1 CDS 54068459 54068528 54068459 ID=Msa0556040-mRNA-1:cds;Parent=Msa0556040-mRNA-1
chr4_1 CDS 54068609 54068746 54068609 ID=Msa0556040-mRNA-1:cds;Parent=Msa0556040-mRNA-1
chr4_1 CDS 54069473 54069594 54069473 ID=Msa0556040-mRNA-1:cds;Parent=Msa0556040-mRNA-1
chr4_1 CDS 54069699 54069906 54069699 ID=Msa0556040-mRNA-1:cds;Parent=Msa0556040-mRNA-1
chr4_1 CDS 54070000 54070082 54070000 ID=Msa0556040-mRNA-1:cds;Parent=Msa0556040-mRNA-1
chr4_1 CDS 54070656 54070962 54070656 ID=Msa0556040-mRNA-1:cds;Parent=Msa0556040-mRNA-1
chr4_1 CDS 54071482 54071732 54071482 ID=Msa0556040-mRNA-1:cds;Parent=Msa0556040-mRNA-1
chr4_1 CDS 54072976 54073176 54072976 ID=Msa0556040-mRNA-1:cds;Parent=Msa0556040-mRNA-1
chr4_1 CDS 54074497 54074784 54074497 ID=Msa0556040-mRNA-1:cds;Parent=Msa0556040-mRNA-1
chr4_1 three_prime_UTR 54074785 54075414 54074785 ID=Msa0556040-mRNA-1:three_prime_utr;Parent=Msa0556040-mRNA-1
Gene Sequence

>Msa0556040

ACGCAAATTCAACCTCACACATCCTCTCTTCTTCCCTCCCAAATCGATTCTCTCCATTTCTTCATTTTCATCTTTTCGTCGGAGAAACCCACAATTTGTGGTGCGACAAGCCCTAAGAAGATATCATTCGGTAAAGAATGCAGGGATAATTTACAAGTCGGGATTGATAAACTCGCTGATGCTGTCTCTCTTACCGTTGGACCCAAAGGACGGAATGTTATTCTTTCTGAATCTGGAAAACTTAAAGTAATAAATGACGGCGTCACAATTGCACGATCCATAGAGCTTTCCGATGCAATTGAGAATGCTGGTGCCATGCTAATTCAAGAGGTTGCAAGTAAAATGAATGATTTGGCTGGTGATGGTACCAGCACTGCAATTATTTTGGCTCGCGCTATGATTAAATCTGGATTATCAGCAGTTGCTTTTGGGGCAAATCCTATTTCTCTGAAGAAGGGAATGGAAAAGACAGTAAAAGATTTGGTGAAGTTCTTGAAGAAGAGAAGTATTCCTGTTGAAGGAAGGGATCATATCAAAGCTGTAGCCTCGATTTCTGCTGGAAATGACGAGTATGTTGGTAATTTGATTGCTGAAGCTATAGAGAAGATTGGATTTGATGGGATTGACAGGGGTTACATGTCTCCTTACTTCATCACCAACCAGGAAAAATCCATTGTGGAGTTTGACAATGCTAAAGTTTTGGTAACGGATCAGAAGATTTCAAGCGTCAAAGAAATAGTTCCTTTGCTGGAAAAAGCTATGCAGTTGAGTGCTCCGCTCTTAATTATTGCGGAGGACGTCACTGCACAAGTGTTGGAAACATTAATAGTGAACAAAATGCAAGGATTACTACGAGTTGCAGCTGTAAAATGTCCAGGACTCGGAGATGGAAAGAAATCACTGTTACAAGATATTGCGCTAATGACGGGTGCGGATTTTCTCTGTGGAGATTTGGGTCTTACACTTGAAGGTACAACATCAGACCAGCTTGGTACTGCAATGAAAGTGAAAATAACCAGTAATGCAACAACTATATTTGCTGATCCAAACACTAAGGCTGAAATTCAGGCTAGAATTTTACAGATAAAGAAGGATCTTGTTGAAACAGACAATGCAAACCATTCGAGAAAGCTCTCAGAGAGAATTGCGAAACTCACTGGCGGTATAGCCGTTATAAAGGTAGGTGCACACACTGAGCTAGAACTTGAGGATAGAAAGCTGAGGATTGAGGATGCTAAGAATGCTACTTTTGCTGCCATAAATGAGGGACTTGTTCCTGGAGGGGGTGCCACATATGTCCACCTTTTGGACTTGATACCTGCCATAAAGAACTCCATGGAAGATCTAGATGAGCAAATTGGTGCTGATATTGTGGCGAAGGCACTTGTCGAACCTGCTAAATCAATTGCAGCTAATGCTGGAGTTGATGGAGACGCTGTTGTCGAGAAGACTAGAACATTTGACTGGAGAATCGGATACAATGCCATGACTGGCACATATGAAGATCTTTTGAATGCTGGAGTAGCAGATCCTAGTCGAGTTGCAAGATGTGCTCTTCAAAGTGCAGTCTCCATTGCTAGCGTGGTTCTAACTACTCAAGCTATATTGGTTGATAAAGTAAAAAAACCCAAGCCACGTGTACCTCTGGTCCCTGGTATAACTCCCTAA
Protein sequence

>Msa0556040

TQIQPHTSSLLPSQIDSLHFFIFIFSSEKPTICGATSPKKISFGKECRDNLQVGIDKLADAVSLTVGPKGRNVILSESGKLKVINDGVTIARSIELSDAIENAGAMLIQEVASKMNDLAGDGTSTAIILARAMIKSGLSAVAFGANPISLKKGMEKTVKDLVKFLKKRSIPVEGRDHIKAVASISAGNDEYVGNLIAEAIEKIGFDGIDRGYMSPYFITNQEKSIVEFDNAKVLVTDQKISSVKEIVPLLEKAMQLSAPLLIIAEDVTAQVLETLIVNKMQGLLRVAAVKCPGLGDGKKSLLQDIALMTGADFLCGDLGLTLEGTTSDQLGTAMKVKITSNATTIFADPNTKAEIQARILQIKKDLVETDNANHSRKLSERIAKLTGGIAVIKVGAHTELELEDRKLRIEDAKNATFAAINEGLVPGGGATYVHLLDLIPAIKNSMEDLDEQIGADIVAKALVEPAKSIAANAGVDGDAVVEKTRTFDWRIGYNAMTGTYEDLLNAGVADPSRVARCALQSAVSIASVVLTTQAILVDKVKKPKPRVPLVPGITP*