AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0617830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0617830 MtrunA17_Chr8g0378531 94.231 416 23 1 1 415 73 488 0.0 771
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0617830 AT1G55280.1 47.355 397 180 10 20 408 14 389 1.13e-107 323
Msa0617830 AT1G55280.2 47.355 397 180 10 20 408 59 434 3.25e-107 323

Find 98 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCAAGACTTGAGGCTATT+TGG 0.152892 4_2:-68519719 Msa0617830:CDS
AAAATTAGTATCAGAGAATT+TGG 0.170887 4_2:+68521066 None:intergenic
TGCAATGCAATTCGTGCTTT+TGG 0.220214 4_2:-68521252 None:intergenic
ATAAATCCAAATCTTTATTC+AGG 0.239984 4_2:-68519947 Msa0617830:CDS
GTAAGTGTGGCATTGACTTT+AGG 0.270375 4_2:-68518334 Msa0617830:CDS
CTTGACCCTGAATAAAGATT+TGG 0.283207 4_2:+68519941 None:intergenic
ATTTGGGTCGGTGTTGATTC+AGG 0.287536 4_2:-68519702 Msa0617830:intron
AACTTCTGCCCAAGTGTTAT+AGG 0.288096 4_2:+68518181 None:intergenic
ATTCCAACTATGATATCTTT+TGG 0.298685 4_2:+68518253 None:intergenic
ATTCATCAACAGAACCTCTT+TGG 0.299534 4_2:+68519763 None:intergenic
TAAGTGTGGCATTGACTTTA+GGG 0.316132 4_2:-68518333 Msa0617830:CDS
CACTGGTATTCTCTTCAATA+TGG 0.322369 4_2:+68519833 None:intergenic
CCTTTGAGATGACAGGAGTT+TGG 0.322539 4_2:+68518614 None:intergenic
TGCAAGACTTGAGGCTATTT+GGG 0.323891 4_2:-68519718 Msa0617830:CDS
GCTTTCTTTGTTGGTGGGAT+TGG 0.336342 4_2:-68518475 Msa0617830:CDS
ACCGATCATTCTACAGAATC+AGG 0.346191 4_2:-68519801 Msa0617830:CDS
GGAACTGATGCATTATTTAG+AGG 0.356287 4_2:-68518373 Msa0617830:CDS
ACCGGGTTCGCTTTCTTTGT+TGG 0.369998 4_2:-68518484 Msa0617830:CDS
TATGGTGGTACCTCTTCTTC+TGG 0.372818 4_2:+68518793 None:intergenic
ACCTCTTCTTCTGGCAATGA+TGG 0.373177 4_2:+68518802 None:intergenic
TTCAGAATTTATGACTGTTA+AGG 0.381614 4_2:+68518831 None:intergenic
ATTTGAGCCATATAAGTTGC+TGG 0.397282 4_2:+68519911 None:intergenic
TTGGTTACCAGCAACTTATA+TGG 0.399396 4_2:-68519918 Msa0617830:CDS
CTTTCTTCCTTTGAGATGAC+AGG 0.409228 4_2:+68518607 None:intergenic
CCAATACGACTTTCGAATTG+AGG 0.415792 4_2:-68518761 Msa0617830:CDS
TTCTTTGTTGGTGGGATTGG+AGG 0.421123 4_2:-68518472 Msa0617830:CDS
AGGTATGTGGACGGATTGCC+AGG 0.423984 4_2:-68518424 Msa0617830:CDS
CTATGCTTGATAGACGTAGA+TGG 0.426250 4_2:-68519861 Msa0617830:CDS
TGCATTATTTAGAGGATTGA+AGG 0.430785 4_2:-68518365 Msa0617830:CDS
CCTCAATTCGAAAGTCGTAT+TGG 0.435999 4_2:+68518761 None:intergenic
CTCTCAGCTGGTGAAAATAC+CGG 0.436324 4_2:-68518502 Msa0617830:CDS
TCAAGCTGAGTCACAAGGTT+AGG 0.450248 4_2:+68518691 None:intergenic
TTCCTCTAAGGTCAGGTCAA+TGG 0.462389 4_2:-68518870 Msa0617830:intron
CTCTAGTGATACACTATGTT+AGG 0.465225 4_2:-68518108 Msa0617830:three_prime_UTR
ACACCAAAAGATATCATAGT+TGG 0.465828 4_2:-68518256 Msa0617830:CDS
AATATAAGTGACTTCAATGC+TGG 0.469726 4_2:-68519891 Msa0617830:CDS
TGGCAAAACAACTGATGGTC+TGG 0.469882 4_2:+68520034 None:intergenic
AACCTTGTGACTCAGCTTGA+AGG 0.472386 4_2:-68518688 Msa0617830:CDS
GGTTCGCTTTCTTTGTTGGT+GGG 0.473259 4_2:-68518480 Msa0617830:CDS
GATATCATAGTTGGAATGAT+GGG 0.476033 4_2:-68518247 Msa0617830:CDS
TCGTATTGGAAGCCGGTGTA+TGG 0.480131 4_2:+68518775 None:intergenic
AGATATCATAGTTGGAATGA+TGG 0.485907 4_2:-68518248 Msa0617830:CDS
CGAATTGAGGATGCATTGCT+TGG 0.486399 4_2:-68518748 Msa0617830:CDS
ATCTTTATTCAGGGTCAAGT+TGG 0.488774 4_2:-68519937 Msa0617830:CDS
GCATTTAAGCCTATAACACT+TGG 0.489741 4_2:-68518190 Msa0617830:CDS
TAAATCCAAATCTTTATTCA+GGG 0.498208 4_2:-68519946 Msa0617830:CDS
TGTATCTGCTATTGTTGCAG+AGG 0.499344 4_2:-68518444 Msa0617830:CDS
GGGTTCGCTTTCTTTGTTGG+TGG 0.499672 4_2:-68518481 Msa0617830:CDS
GTCAATGCCACACTTACTAT+AGG 0.502910 4_2:+68518340 None:intergenic
TCAATTGCTTCCCTCTCAGC+TGG 0.512231 4_2:-68518514 Msa0617830:CDS
ATGTAAAGTTTCTGTGGTGT+TGG 0.512933 4_2:-68518215 Msa0617830:CDS
TACTTTATCTTCCCTTGAGG+AGG 0.516988 4_2:-68519970 Msa0617830:CDS
TAGGCATAACTCAATACAAA+TGG 0.519513 4_2:-68518089 Msa0617830:three_prime_UTR
CATACTTTCACGTCAGAGGC+TGG 0.524216 4_2:+68520014 None:intergenic
CCCTGATTCTGTAGAATGAT+CGG 0.525561 4_2:+68519800 None:intergenic
ACCAACAAAGAAAGCGAACC+CGG 0.525652 4_2:+68518483 None:intergenic
ACTTGAAATTCTTCTAGAAG+AGG 0.530331 4_2:+68521117 None:intergenic
ATTTGGATTTATCCTCCTCA+AGG 0.531242 4_2:+68519958 None:intergenic
GATATACTTCATTTCCAAAG+AGG 0.531996 4_2:-68519777 Msa0617830:CDS
AAGGTTCAGAGCTATAGCTA+TGG 0.534181 4_2:-68521224 Msa0617830:exon
TAACAGTCATAAATTCTGAA+TGG 0.537218 4_2:-68518828 Msa0617830:CDS
ACACTTGGGCAGAAGTTACC+TGG 0.542605 4_2:-68518175 Msa0617830:CDS
ACCTTGTGACTCAGCTTGAA+GGG 0.543737 4_2:-68518687 Msa0617830:CDS
GCATTATTTAGAGGATTGAA+GGG 0.551480 4_2:-68518364 Msa0617830:CDS
TTTGTAGTGAAGTATAGCTC+AGG 0.553123 4_2:-68518301 Msa0617830:CDS
AGACTTGAGGCTATTTGGGT+CGG 0.558381 4_2:-68519714 Msa0617830:CDS
TCTTGCATGTAAAGTTTCTG+TGG 0.561151 4_2:-68518221 Msa0617830:CDS
ACCATCATTGCCAGAAGAAG+AGG 0.565997 4_2:-68518803 Msa0617830:CDS
GAGGCTGGCAAAACAACTGA+TGG 0.567913 4_2:+68520029 None:intergenic
TTGTGAATGAGTGAAGTTGA+AGG 0.568987 4_2:+68521175 None:intergenic
TGATCGGTCATCAAACTCAC+TGG 0.570085 4_2:+68519816 None:intergenic
GCTATTGTTGCAGAGGTATG+TGG 0.570298 4_2:-68518437 Msa0617830:CDS
AGGTCAGGTCAATGGAGACT+AGG 0.573348 4_2:-68518862 Msa0617830:intron
TCGAAAGTCGTATTGGAAGC+CGG 0.576014 4_2:+68518768 None:intergenic
CATCTCAAAGGAAGAAAGCA+TGG 0.576259 4_2:-68518602 Msa0617830:CDS
CCGATCATTCTACAGAATCA+GGG 0.579731 4_2:-68519800 Msa0617830:CDS
CCAAACTCCTGTCATCTCAA+AGG 0.580577 4_2:-68518614 Msa0617830:CDS
TGTGACTCAGCTTGAAGGGA+CGG 0.586916 4_2:-68518683 Msa0617830:CDS
AGGAACTGATCTATCCATGT+TGG 0.588578 4_2:-68518722 Msa0617830:CDS
CATCTACGTCTATCAAGCAT+AGG 0.594306 4_2:+68519862 None:intergenic
AAATACTTTATCTTCCCTTG+AGG 0.599620 4_2:-68519973 Msa0617830:CDS
TGTGCATACTTTCACGTCAG+AGG 0.601261 4_2:+68520010 None:intergenic
TTTGGATTTATCCTCCTCAA+GGG 0.602029 4_2:+68519959 None:intergenic
TCTCAGCTGGTGAAAATACC+GGG 0.602142 4_2:-68518501 Msa0617830:CDS
TATTGGAAGCCGGTGTATGG+TGG 0.603889 4_2:+68518778 None:intergenic
AAATTAATCACAAGCAACAA+AGG 0.606917 4_2:-68518397 Msa0617830:CDS
GAGGATGCATTGCTTGGTGA+AGG 0.609971 4_2:-68518742 Msa0617830:CDS
CATTTAAGCCTATAACACTT+GGG 0.611508 4_2:-68518189 Msa0617830:CDS
GAAGGGTCCTATAGTAAGTG+TGG 0.617641 4_2:-68518347 Msa0617830:CDS
TCCCTTCAAGCTGAGTCACA+AGG 0.621122 4_2:+68518686 None:intergenic
CGATCATTCTACAGAATCAG+GGG 0.632486 4_2:-68519799 Msa0617830:CDS
GTGTATAATTACATGTCACC+AGG 0.632874 4_2:+68518157 None:intergenic
CTAGAATTTATATATATCGA+CGG 0.646845 4_2:-68518049 Msa0617830:three_prime_UTR
GTTAGGTCTTAATTCCAACA+TGG 0.676496 4_2:+68518708 None:intergenic
TTAATCACAAGCAACAAAGG+AGG 0.678453 4_2:-68518394 Msa0617830:CDS
TTGTTGCAGAGGTATGTGGA+CGG 0.680400 4_2:-68518433 Msa0617830:CDS
GAAGAGGTACCACCATACAC+CGG 0.692574 4_2:-68518787 Msa0617830:CDS
CTCAAAGGAAGAAAGCATGG+AGG 0.740445 4_2:-68518599 Msa0617830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAAAAATCTTAACTTTTA+AGG - chr4_2:68518264-68518283 Msa0617830:CDS 10.0%
!!! AAATATATGATTCAAAATTT+TGG - chr4_2:68518403-68518422 Msa0617830:CDS 10.0%
!!! AAAAATAAAAGTACTTTATT+TGG + chr4_2:68519106-68519125 None:intergenic 10.0%
!!! ATTCTAGTATATATTTTTTT+TGG - chr4_2:68519598-68519617 Msa0617830:intron 10.0%
!!! AATATAGAAATTTAAAGTTT+TGG + chr4_2:68520288-68520307 None:intergenic 10.0%
!!! ATTTGTTTTTGTTAAAGTAT+TGG - chr4_2:68518597-68518616 Msa0617830:CDS 15.0%
!! TTTCAAAAATAAAATATGTG+AGG + chr4_2:68518627-68518646 None:intergenic 15.0%
!! AAAATTAGTATCAGAGAATT+TGG + chr4_2:68518208-68518227 None:intergenic 20.0%
!!! TTTAACTGTTCTCTTTATTT+TGG - chr4_2:68518308-68518327 Msa0617830:CDS 20.0%
!!! TTAACTGTTCTCTTTATTTT+GGG - chr4_2:68518309-68518328 Msa0617830:CDS 20.0%
!!! TATATGATTCAAAATTTTGG+AGG - chr4_2:68518406-68518425 Msa0617830:CDS 20.0%
!!! AATTTTGGAGGTATTTTTAT+TGG - chr4_2:68518418-68518437 Msa0617830:CDS 20.0%
!! GTATATTAAATATTTCAGTG+TGG - chr4_2:68518702-68518721 Msa0617830:CDS 20.0%
!!! AAATTGTAACTTTTGTAACA+CGG + chr4_2:68518877-68518896 None:intergenic 20.0%
!!! TTTAGAGTTTGAAAAGATAA+CGG - chr4_2:68518894-68518913 Msa0617830:intron 20.0%
!!! TACATATAACAAATGACTTT+TGG + chr4_2:68519137-68519156 None:intergenic 20.0%
!! ATAAATCCAAATCTTTATTC+AGG - chr4_2:68519324-68519343 Msa0617830:intron 20.0%
!! TAAATCCAAATCTTTATTCA+GGG - chr4_2:68519325-68519344 Msa0617830:intron 20.0%
!! TAACATTTCTGTTTAAAAAC+TGG + chr4_2:68519750-68519769 None:intergenic 20.0%
!! AACTTTCTAAATTGTTAACA+GGG - chr4_2:68519803-68519822 Msa0617830:CDS 20.0%
!! ATTTGGTTAATAGATATATC+AGG - chr4_2:68519854-68519873 Msa0617830:CDS 20.0%
!! ATATTATTAACCATGATTTC+AGG + chr4_2:68519980-68519999 None:intergenic 20.0%
!! GTTAATAATATTCGAATTCA+TGG - chr4_2:68519989-68520008 Msa0617830:CDS 20.0%
!! TATTGTTTGAACATCAATTT+GGG + chr4_2:68520142-68520161 None:intergenic 20.0%
!! ATATTGTTTGAACATCAATT+TGG + chr4_2:68520143-68520162 None:intergenic 20.0%
!!! TGATGTTCAAACAATATTTT+TGG - chr4_2:68520146-68520165 Msa0617830:intron 20.0%
!!! ATAGAAATTTAAAGTTTTGG+AGG + chr4_2:68520285-68520304 None:intergenic 20.0%
!!! TCTTTTTTGAACAAACTTAT+AGG + chr4_2:68520616-68520635 None:intergenic 20.0%
!! CTAGAATTTATATATATCGA+CGG - chr4_2:68521222-68521241 Msa0617830:exon 20.0%
!! TTCTCTGATACTAATTTTCA+AGG - chr4_2:68518210-68518229 Msa0617830:CDS 25.0%
! TAACGAAGAAATTAAGAAGT+GGG + chr4_2:68518240-68518259 None:intergenic 25.0%
! TTAACGAAGAAATTAAGAAG+TGG + chr4_2:68518241-68518260 None:intergenic 25.0%
!! AAGGTTTAGTTTCACTTAAA+TGG - chr4_2:68518283-68518302 Msa0617830:CDS 25.0%
! ATTTGATGTTTGCCTATATA+TGG - chr4_2:68518523-68518542 Msa0617830:CDS 25.0%
! TCATCATATATGCCATATAT+AGG + chr4_2:68518538-68518557 None:intergenic 25.0%
! TGTTTGTAGTTATTATTGTC+AGG - chr4_2:68518668-68518687 Msa0617830:CDS 25.0%
! TATTTAATATACCACTTGCT+AGG + chr4_2:68518694-68518713 None:intergenic 25.0%
! GAGTACTTAATGATTATAGT+TGG - chr4_2:68518726-68518745 Msa0617830:CDS 25.0%
!!! TGATTATAGTTGGTTAGTTT+TGG - chr4_2:68518736-68518755 Msa0617830:CDS 25.0%
!!! TGTTGATGAATTCATTTTTG+AGG - chr4_2:68519520-68519539 Msa0617830:intron 25.0%
!!! GTTGATGAATTCATTTTTGA+GGG - chr4_2:68519521-68519540 Msa0617830:intron 25.0%
! AAATTGTATTTCCTGACATT+TGG - chr4_2:68519716-68519735 Msa0617830:CDS 25.0%
! CAACTTTCTAAATTGTTAAC+AGG - chr4_2:68519802-68519821 Msa0617830:CDS 25.0%
! GTTAATCACGTTTAAATTTG+TGG + chr4_2:68519917-68519936 None:intergenic 25.0%
! ATTTGAACACTTGAAAATCA+AGG + chr4_2:68519939-68519958 None:intergenic 25.0%
! TGTTCAAATCTACATATAGT+TGG - chr4_2:68519950-68519969 Msa0617830:CDS 25.0%
! ATAATATTCGAATTCATGGT+TGG - chr4_2:68519993-68520012 Msa0617830:CDS 25.0%
! GAAGCTTGAAAAATTAATGT+TGG - chr4_2:68520337-68520356 Msa0617830:intron 25.0%
! TTCAGAATTTATGACTGTTA+AGG + chr4_2:68520443-68520462 None:intergenic 25.0%
! TAACAGTCATAAATTCTGAA+TGG - chr4_2:68520443-68520462 Msa0617830:intron 25.0%
! AAATTAATCACAAGCAACAA+AGG - chr4_2:68520874-68520893 Msa0617830:intron 25.0%
!! ATTCCAACTATGATATCTTT+TGG + chr4_2:68521021-68521040 None:intergenic 25.0%
! ACTTGAAATTCTTCTAGAAG+AGG + chr4_2:68518157-68518176 None:intergenic 30.0%
AACGAAGAAATTAAGAAGTG+GGG + chr4_2:68518239-68518258 None:intergenic 30.0%
!!! TTGGAGGTATTTTTATTGGA+AGG - chr4_2:68518422-68518441 Msa0617830:CDS 30.0%
!! AGGAAGCTTTTTAAGCAATT+TGG - chr4_2:68518442-68518461 Msa0617830:CDS 30.0%
!! GGAAGCTTTTTAAGCAATTT+GGG - chr4_2:68518443-68518462 Msa0617830:CDS 30.0%
ATATAGGCAAACATCAAATC+AGG + chr4_2:68518522-68518541 None:intergenic 30.0%
! CAAACAACTTTGAAAAGAGT+AGG + chr4_2:68518654-68518673 None:intergenic 30.0%
AAGACCATGCTAATATAAAC+CGG + chr4_2:68519032-68519051 None:intergenic 30.0%
AATATTTACTCCAAGAAGCA+TGG + chr4_2:68519078-68519097 None:intergenic 30.0%
! GCTTCTTGGAGTAAATATTT+TGG - chr4_2:68519079-68519098 Msa0617830:intron 30.0%
AAATACTTTATCTTCCCTTG+AGG - chr4_2:68519298-68519317 Msa0617830:intron 30.0%
AATATAAGTGACTTCAATGC+TGG - chr4_2:68519380-68519399 Msa0617830:intron 30.0%
GATATACTTCATTTCCAAAG+AGG - chr4_2:68519494-68519513 Msa0617830:intron 30.0%
GACTTCAAAATTGAAGGTTA+AGG + chr4_2:68519650-68519669 None:intergenic 30.0%
TAAAGGGACTTCAAAATTGA+AGG + chr4_2:68519656-68519675 None:intergenic 30.0%
! GAAGACAGATGTTGATTAAA+GGG + chr4_2:68519672-68519691 None:intergenic 30.0%
CAGCACTTCAAAAAATTTGA+GGG + chr4_2:68519694-68519713 None:intergenic 30.0%
ACAGCACTTCAAAAAATTTG+AGG + chr4_2:68519695-68519714 None:intergenic 30.0%
!! GTTAAAAGAAGCGTTACATT+TGG - chr4_2:68519837-68519856 Msa0617830:CDS 30.0%
GTAGTTCAATAAGTAGTTAG+TGG + chr4_2:68520063-68520082 None:intergenic 30.0%
! ATATATGATGGAATCCTAGT+GGG + chr4_2:68520221-68520240 None:intergenic 30.0%
! AATATATGATGGAATCCTAG+TGG + chr4_2:68520222-68520241 None:intergenic 30.0%
! CTTGTGATTAATTTTGAACC+TGG + chr4_2:68520868-68520887 None:intergenic 30.0%
TGCATTATTTAGAGGATTGA+AGG - chr4_2:68520906-68520925 Msa0617830:intron 30.0%
GCATTATTTAGAGGATTGAA+GGG - chr4_2:68520907-68520926 Msa0617830:intron 30.0%
ACACCAAAAGATATCATAGT+TGG - chr4_2:68521015-68521034 Msa0617830:intron 30.0%
AGATATCATAGTTGGAATGA+TGG - chr4_2:68521023-68521042 Msa0617830:intron 30.0%
GATATCATAGTTGGAATGAT+GGG - chr4_2:68521024-68521043 Msa0617830:intron 30.0%
CATTTAAGCCTATAACACTT+GGG - chr4_2:68521082-68521101 Msa0617830:CDS 30.0%
TAGGCATAACTCAATACAAA+TGG - chr4_2:68521182-68521201 Msa0617830:CDS 30.0%
! GAAGGAATCATAGTTTTCAC+AGG + chr4_2:68518081-68518100 None:intergenic 35.0%
TTGTGAATGAGTGAAGTTGA+AGG + chr4_2:68518099-68518118 None:intergenic 35.0%
TTTGGGAGTAATTTACAAGC+TGG - chr4_2:68518460-68518479 Msa0617830:CDS 35.0%
TTGTCAAATCATGGCTGATT+TGG - chr4_2:68518483-68518502 Msa0617830:CDS 35.0%
TACTGAGTACATGTTTGGAT+TGG + chr4_2:68518948-68518967 None:intergenic 35.0%
!! CAAAGTACTGAGTACATGTT+TGG + chr4_2:68518953-68518972 None:intergenic 35.0%
CAAACATGTACTCAGTACTT+TGG - chr4_2:68518951-68518970 Msa0617830:intron 35.0%
!! TATTAGCATGGTCTTGTAGA+TGG - chr4_2:68519037-68519056 Msa0617830:intron 35.0%
TTAATCAGTTCCATGCTTCT+TGG - chr4_2:68519065-68519084 Msa0617830:intron 35.0%
TATGTAATCAGTCTCATGTC+TGG - chr4_2:68519151-68519170 Msa0617830:intron 35.0%
ATGAATTATCGACACAAGCA+CGG + chr4_2:68519180-68519199 None:intergenic 35.0%
GTCGATAATTCATAGCTAAC+TGG - chr4_2:68519187-68519206 Msa0617830:intron 35.0%
! GGTATAACTCTGAAAATCTG+TGG + chr4_2:68519219-68519238 None:intergenic 35.0%
TTTGGATTTATCCTCCTCAA+GGG + chr4_2:68519315-68519334 None:intergenic 35.0%
ATTTGGATTTATCCTCCTCA+AGG + chr4_2:68519316-68519335 None:intergenic 35.0%
CTTGACCCTGAATAAAGATT+TGG + chr4_2:68519333-68519352 None:intergenic 35.0%
ATCTTTATTCAGGGTCAAGT+TGG - chr4_2:68519334-68519353 Msa0617830:intron 35.0%
TTGGTTACCAGCAACTTATA+TGG - chr4_2:68519353-68519372 Msa0617830:intron 35.0%
ATTTGAGCCATATAAGTTGC+TGG + chr4_2:68519363-68519382 None:intergenic 35.0%
CACTGGTATTCTCTTCAATA+TGG + chr4_2:68519441-68519460 None:intergenic 35.0%
ATTCATCAACAGAACCTCTT+TGG + chr4_2:68519511-68519530 None:intergenic 35.0%
TCCAAAAATTGCAAGACTTG+AGG - chr4_2:68519544-68519563 Msa0617830:intron 35.0%
! GGAAGACAGATGTTGATTAA+AGG + chr4_2:68519673-68519692 None:intergenic 35.0%
AAATGACATTGATATGCCTC+TGG + chr4_2:68520196-68520215 None:intergenic 35.0%
! TATATGATGGAATCCTAGTG+GGG + chr4_2:68520220-68520239 None:intergenic 35.0%
TTGGGACAGCTAATATATGA+TGG + chr4_2:68520233-68520252 None:intergenic 35.0%
TTGTCACTGCATCAAACATA+AGG - chr4_2:68520307-68520326 Msa0617830:intron 35.0%
ATACTCTTCTTCTTCCTCTA+AGG - chr4_2:68520389-68520408 Msa0617830:intron 35.0%
GTTAGGTCTTAATTCCAACA+TGG + chr4_2:68520566-68520585 None:intergenic 35.0%
!! GATGCTGTGCTGATATTTTT+CGG - chr4_2:68520730-68520749 Msa0617830:intron 35.0%
TTAATCACAAGCAACAAAGG+AGG - chr4_2:68520877-68520896 Msa0617830:intron 35.0%
GGAACTGATGCATTATTTAG+AGG - chr4_2:68520898-68520917 Msa0617830:intron 35.0%
!! TAAGTGTGGCATTGACTTTA+GGG - chr4_2:68520938-68520957 Msa0617830:intron 35.0%
TTTGTAGTGAAGTATAGCTC+AGG - chr4_2:68520970-68520989 Msa0617830:intron 35.0%
TCTTGCATGTAAAGTTTCTG+TGG - chr4_2:68521050-68521069 Msa0617830:intron 35.0%
ATGTAAAGTTTCTGTGGTGT+TGG - chr4_2:68521056-68521075 Msa0617830:intron 35.0%
GCATTTAAGCCTATAACACT+TGG - chr4_2:68521081-68521100 Msa0617830:CDS 35.0%
GTGTATAATTACATGTCACC+AGG + chr4_2:68521117-68521136 None:intergenic 35.0%
CTCTAGTGATACACTATGTT+AGG - chr4_2:68521163-68521182 Msa0617830:CDS 35.0%
AAGGTTCAGAGCTATAGCTA+TGG - chr4_2:68518047-68518066 Msa0617830:three_prime_UTR 40.0%
ACAAGCTGGTTGTCAAATCA+TGG - chr4_2:68518474-68518493 Msa0617830:CDS 40.0%
! TTGAAAAGATAACGGTGCCA+CGG - chr4_2:68518902-68518921 Msa0617830:intron 40.0%
!! GTTTGGATTGGCAATGTGTT+TGG + chr4_2:68518936-68518955 None:intergenic 40.0%
CATGCTAATATAAACCGGCT+AGG + chr4_2:68519027-68519046 None:intergenic 40.0%
! CTAGCCGGTTTATATTAGCA+TGG - chr4_2:68519025-68519044 Msa0617830:intron 40.0%
TACTTTATCTTCCCTTGAGG+AGG - chr4_2:68519301-68519320 Msa0617830:intron 40.0%
CATCTACGTCTATCAAGCAT+AGG + chr4_2:68519412-68519431 None:intergenic 40.0%
CTATGCTTGATAGACGTAGA+TGG - chr4_2:68519410-68519429 Msa0617830:intron 40.0%
ACCGATCATTCTACAGAATC+AGG - chr4_2:68519470-68519489 Msa0617830:intron 40.0%
CCCTGATTCTGTAGAATGAT+CGG + chr4_2:68519474-68519493 None:intergenic 40.0%
CCGATCATTCTACAGAATCA+GGG - chr4_2:68519471-68519490 Msa0617830:intron 40.0%
CGATCATTCTACAGAATCAG+GGG - chr4_2:68519472-68519491 Msa0617830:intron 40.0%
! GCCTCAAGTCTTGCAATTTT+TGG + chr4_2:68519548-68519567 None:intergenic 40.0%
TTGCAAGACTTGAGGCTATT+TGG - chr4_2:68519552-68519571 Msa0617830:intron 40.0%
TGCAAGACTTGAGGCTATTT+GGG - chr4_2:68519553-68519572 Msa0617830:intron 40.0%
TGGAATGTGATCCAAATGTC+AGG + chr4_2:68519730-68519749 None:intergenic 40.0%
AGTTGGAACACCTGAAATCA+TGG - chr4_2:68519967-68519986 Msa0617830:CDS 40.0%
! GGTTGGTTAAGCTCATTTGA+TGG - chr4_2:68520010-68520029 Msa0617830:CDS 40.0%
GTTAGTGGTGAAGACAAGAT+CGG + chr4_2:68520048-68520067 None:intergenic 40.0%
! ATATGATGGAATCCTAGTGG+GGG + chr4_2:68520219-68520238 None:intergenic 40.0%
CCTCAATTCGAAAGTCGTAT+TGG + chr4_2:68520513-68520532 None:intergenic 40.0%
CCAATACGACTTTCGAATTG+AGG - chr4_2:68520510-68520529 Msa0617830:intron 40.0%
AGGAACTGATCTATCCATGT+TGG - chr4_2:68520549-68520568 Msa0617830:intron 40.0%
!! CTTTCTTCCTTTGAGATGAC+AGG + chr4_2:68520667-68520686 None:intergenic 40.0%
CATCTCAAAGGAAGAAAGCA+TGG - chr4_2:68520669-68520688 Msa0617830:intron 40.0%
TGTATCTGCTATTGTTGCAG+AGG - chr4_2:68520827-68520846 Msa0617830:intron 40.0%
GTCAATGCCACACTTACTAT+AGG + chr4_2:68520934-68520953 None:intergenic 40.0%
!! GTAAGTGTGGCATTGACTTT+AGG - chr4_2:68520937-68520956 Msa0617830:intron 40.0%
AACTTCTGCCCAAGTGTTAT+AGG + chr4_2:68521093-68521112 None:intergenic 40.0%
!! ATTCGTGCTTTTGGGGAAGA+AGG - chr4_2:68518028-68518047 Msa0617830:three_prime_UTR 45.0%
TTATTGTCAGGCCTAGCAAG+TGG - chr4_2:68518680-68518699 Msa0617830:CDS 45.0%
!! TGAAAAGATAACGGTGCCAC+GGG - chr4_2:68518903-68518922 Msa0617830:intron 45.0%
CTCAAAAGCTTGAACCTAGC+CGG - chr4_2:68519010-68519029 Msa0617830:intron 45.0%
TGGCAAAACAACTGATGGTC+TGG + chr4_2:68519240-68519259 None:intergenic 45.0%
TGTGCATACTTTCACGTCAG+AGG + chr4_2:68519264-68519283 None:intergenic 45.0%
TGATCGGTCATCAAACTCAC+TGG + chr4_2:68519458-68519477 None:intergenic 45.0%
AGACTTGAGGCTATTTGGGT+CGG - chr4_2:68519557-68519576 Msa0617830:intron 45.0%
!! ATTTGGGTCGGTGTTGATTC+AGG - chr4_2:68519569-68519588 Msa0617830:intron 45.0%
TGACATTGATATGCCTCTGG+TGG + chr4_2:68520193-68520212 None:intergenic 45.0%
! TCAATGTCATTTCCCCCACT+AGG - chr4_2:68520204-68520223 Msa0617830:intron 45.0%
!! CTTCTTCTTCCTCTAAGGTC+AGG - chr4_2:68520394-68520413 Msa0617830:intron 45.0%
!! TTCCTCTAAGGTCAGGTCAA+TGG - chr4_2:68520401-68520420 Msa0617830:intron 45.0%
ACCATCATTGCCAGAAGAAG+AGG - chr4_2:68520468-68520487 Msa0617830:intron 45.0%
ACCTCTTCTTCTGGCAATGA+TGG + chr4_2:68520472-68520491 None:intergenic 45.0%
TATGGTGGTACCTCTTCTTC+TGG + chr4_2:68520481-68520500 None:intergenic 45.0%
TCGAAAGTCGTATTGGAAGC+CGG + chr4_2:68520506-68520525 None:intergenic 45.0%
CGAATTGAGGATGCATTGCT+TGG - chr4_2:68520523-68520542 Msa0617830:intron 45.0%
TCAAGCTGAGTCACAAGGTT+AGG + chr4_2:68520583-68520602 None:intergenic 45.0%
AACCTTGTGACTCAGCTTGA+AGG - chr4_2:68520583-68520602 Msa0617830:intron 45.0%
ACCTTGTGACTCAGCTTGAA+GGG - chr4_2:68520584-68520603 Msa0617830:intron 45.0%
!! CCTTTGAGATGACAGGAGTT+TGG + chr4_2:68520660-68520679 None:intergenic 45.0%
CCAAACTCCTGTCATCTCAA+AGG - chr4_2:68520657-68520676 Msa0617830:intron 45.0%
! CTCAAAGGAAGAAAGCATGG+AGG - chr4_2:68520672-68520691 Msa0617830:intron 45.0%
! GGTATTTTCACCAGCTGAGA+GGG + chr4_2:68520770-68520789 None:intergenic 45.0%
CTCTCAGCTGGTGAAAATAC+CGG - chr4_2:68520769-68520788 Msa0617830:intron 45.0%
TCTCAGCTGGTGAAAATACC+GGG - chr4_2:68520770-68520789 Msa0617830:intron 45.0%
ACCAACAAAGAAAGCGAACC+CGG + chr4_2:68520791-68520810 None:intergenic 45.0%
GGTTCGCTTTCTTTGTTGGT+GGG - chr4_2:68520791-68520810 Msa0617830:intron 45.0%
! GCTTTCTTTGTTGGTGGGAT+TGG - chr4_2:68520796-68520815 Msa0617830:intron 45.0%
! TTCTTTGTTGGTGGGATTGG+AGG - chr4_2:68520799-68520818 Msa0617830:intron 45.0%
! GCTATTGTTGCAGAGGTATG+TGG - chr4_2:68520834-68520853 Msa0617830:intron 45.0%
! TTGTTGCAGAGGTATGTGGA+CGG - chr4_2:68520838-68520857 Msa0617830:intron 45.0%
GAAGGGTCCTATAGTAAGTG+TGG - chr4_2:68520924-68520943 Msa0617830:intron 45.0%
!! AAATATAAATAATATATGTT+GGG + chr4_2:68520251-68520270 None:intergenic 5.0%
!! AAAATATAAATAATATATGT+TGG + chr4_2:68520252-68520271 None:intergenic 5.0%
!! GAAAAGATAACGGTGCCACG+GGG - chr4_2:68518904-68518923 Msa0617830:intron 50.0%
GAGGCTGGCAAAACAACTGA+TGG + chr4_2:68519245-68519264 None:intergenic 50.0%
CATACTTTCACGTCAGAGGC+TGG + chr4_2:68519260-68519279 None:intergenic 50.0%
GCATTGTGCAATTCCACCAG+AGG - chr4_2:68520177-68520196 Msa0617830:intron 50.0%
CTCCATTGACCTGACCTTAG+AGG + chr4_2:68520406-68520425 None:intergenic 50.0%
AGGTCAGGTCAATGGAGACT+AGG - chr4_2:68520409-68520428 Msa0617830:intron 50.0%
!! GAAGAGGTACCACCATACAC+CGG - chr4_2:68520484-68520503 Msa0617830:intron 50.0%
TATTGGAAGCCGGTGTATGG+TGG + chr4_2:68520496-68520515 None:intergenic 50.0%
TCGTATTGGAAGCCGGTGTA+TGG + chr4_2:68520499-68520518 None:intergenic 50.0%
! GAGGATGCATTGCTTGGTGA+AGG - chr4_2:68520529-68520548 Msa0617830:intron 50.0%
TCCCTTCAAGCTGAGTCACA+AGG + chr4_2:68520588-68520607 None:intergenic 50.0%
TGTGACTCAGCTTGAAGGGA+CGG - chr4_2:68520588-68520607 Msa0617830:intron 50.0%
TCAATTGCTTCCCTCTCAGC+TGG - chr4_2:68520757-68520776 Msa0617830:intron 50.0%
! CGGTATTTTCACCAGCTGAG+AGG + chr4_2:68520771-68520790 None:intergenic 50.0%
ACCGGGTTCGCTTTCTTTGT+TGG - chr4_2:68520787-68520806 Msa0617830:intron 50.0%
GGGTTCGCTTTCTTTGTTGG+TGG - chr4_2:68520790-68520809 Msa0617830:intron 50.0%
ACACTTGGGCAGAAGTTACC+TGG - chr4_2:68521096-68521115 Msa0617830:CDS 50.0%
TGTGTTTGGCGAAATCCCCG+TGG + chr4_2:68518922-68518941 None:intergenic 55.0%
!! AGGTATGTGGACGGATTGCC+AGG - chr4_2:68520847-68520866 Msa0617830:intron 55.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 68518027 68521266 68518027 ID=Msa0617830;Name=Msa0617830
chr4_2 mRNA 68518027 68521266 68518027 ID=Msa0617830-mRNA-1;Parent=Msa0617830;Name=Msa0617830-mRNA-1;_AED=0.06;_eAED=0.06;_QI=39|1|1|1|1|1|3|138|415
chr4_2 exon 68518027 68518877 68518027 ID=Msa0617830-mRNA-1:exon:19678;Parent=Msa0617830-mRNA-1
chr4_2 exon 68519703 68520071 68519703 ID=Msa0617830-mRNA-1:exon:19677;Parent=Msa0617830-mRNA-1
chr4_2 exon 68521062 68521266 68521062 ID=Msa0617830-mRNA-1:exon:19676;Parent=Msa0617830-mRNA-1
chr4_2 five_prime_UTR 68521228 68521266 68521228 ID=Msa0617830-mRNA-1:five_prime_utr;Parent=Msa0617830-mRNA-1
chr4_2 CDS 68521062 68521227 68521062 ID=Msa0617830-mRNA-1:cds;Parent=Msa0617830-mRNA-1
chr4_2 CDS 68519703 68520071 68519703 ID=Msa0617830-mRNA-1:cds;Parent=Msa0617830-mRNA-1
chr4_2 CDS 68518165 68518877 68518165 ID=Msa0617830-mRNA-1:cds;Parent=Msa0617830-mRNA-1
chr4_2 three_prime_UTR 68518027 68518164 68518027 ID=Msa0617830-mRNA-1:three_prime_utr;Parent=Msa0617830-mRNA-1
Gene Sequence

>Msa0617830

ATGGAGACAATTCCTGTGAAAACTATGATTCCTTCAACTTCACTCATTCACAATCATGCTTTCAAAAGAAAATCAACAACACACACAACCTCTTCTAGAAGAATTTCAAGTTCAAGACATGTACGCTTTTCTATTCGTGCCAAATTCTCTGATACTAATTTTCAAGATTTTCAGAGTTATACCAGACCATCAGTTGTTTTGCCAGCCTCTGACGTGAAAGTATGCACAGATACATCATTAGAAAATACTTTATCTTCCCTTGAGGAGGATAAATCCAAATCTTTATTCAGGGTCAAGTTGGTTACCAGCAACTTATATGGCTCAAATATAAGTGACTTCAATGCTGGAATTCTCCTATGCTTGATAGACGTAGATGGAAATTCCATATTGAAGAGAATACCAGTGAGTTTGATGACCGATCATTCTACAGAATCAGGGGATATACTTCATTTCCAAAGAGGTTCTGTTGATGAATTCATTTTTGAGGGTCCAAAAATTGCAAGACTTGAGGCTATTTGGGTCGGTGTTGATTCAGGTCAATGGAGACTAGGAAATATCTCCTTAACAGTCATAAATTCTGAATGGCAACCATCATTGCCAGAAGAAGAGGTACCACCATACACCGGCTTCCAATACGACTTTCGAATTGAGGATGCATTGCTTGGTGAAGGAACTGATCTATCCATGTTGGAATTAAGACCTAACCTTGTGACTCAGCTTGAAGGGACGGATCCTATAAGTTTGTTCAAAAAAGAACTTTATGACAGTACATTGCTCCAAACTCCTGTCATCTCAAAGGAAGAAAGCATGGAGGAATACACAAATTTGAAATTCTCATTGCTATTTTATGATGCTGTGCTGATATTTTTCGGCACATCAATTGCTTCCCTCTCAGCTGGTGAAAATACCGGGTTCGCTTTCTTTGTTGGTGGGATTGGAGGCTTCTTGTATCTGCTATTGTTGCAGAGGTATGTGGACGGATTGCCAGGTTCAAAATTAATCACAAGCAACAAAGGAGGAACTGATGCATTATTTAGAGGATTGAAGGGTCCTATAGTAAGTGTGGCATTGACTTTAGGGTTTGCTGTATTTGTAGTGAAGTATAGCTCAGGAGATGATTTTGAAGTGTTCTTAACACCAAAAGATATCATAGTTGGAATGATGGGATTTCTTGCATGTAAAGTTTCTGTGGTGTTGGCTGCATTTAAGCCTATAACACTTGGGCAGAAGTTACCTGGTGACATGTAA

Protein sequence

>Msa0617830

METIPVKTMIPSTSLIHNHAFKRKSTTHTTSSRRISSSRHVRFSIRAKFSDTNFQDFQSYTRPSVVLPASDVKVCTDTSLENTLSSLEEDKSKSLFRVKLVTSNLYGSNISDFNAGILLCLIDVDGNSILKRIPVSLMTDHSTESGDILHFQRGSVDEFIFEGPKIARLEAIWVGVDSGQWRLGNISLTVINSEWQPSLPEEEVPPYTGFQYDFRIEDALLGEGTDLSMLELRPNLVTQLEGTDPISLFKKELYDSTLLQTPVISKEESMEEYTNLKFSLLFYDAVLIFFGTSIASLSAGENTGFAFFVGGIGGFLYLLLLQRYVDGLPGSKLITSNKGGTDALFRGLKGPIVSVALTLGFAVFVVKYSSGDDFEVFLTPKDIIVGMMGFLACKVSVVLAAFKPITLGQKLPGDM*