Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0693970 | XP_003607958.1 | 96.809 | 376 | 11 | 1 | 1 | 375 | 1 | 376 | 0.0 | 745 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0693970 | sp|Q9M7Q5|AI5L4_ARATH | 46.272 | 389 | 159 | 12 | 18 | 375 | 23 | 392 | 6.30e-90 | 278 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0693970 | G7JL68 | 96.809 | 376 | 11 | 1 | 1 | 375 | 1 | 376 | 0.0 | 745 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0693970 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0693970 | Msa0917910 | 0.818643 | 1.761616e-52 | -8.615850e-47 |
| Msa0693970 | Msa1269940 | 0.813921 | 2.003358e-51 | -8.615850e-47 |
| Msa0693970 | Msa1463840 | -0.812607 | 3.894195e-51 | -8.615850e-47 |
| Msa0240420 | Msa0693970 | 0.805046 | 1.612316e-49 | -8.615850e-47 |
| Msa0595230 | Msa0693970 | 0.808185 | 3.506523e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0693970 | MtrunA17_Chr4g0044771 | 96.809 | 376 | 11 | 1 | 1 | 375 | 1 | 376 | 0.0 | 745 |
| Msa0693970 | MtrunA17_Chr3g0133971 | 45.199 | 427 | 151 | 13 | 14 | 375 | 23 | 431 | 2.08e-89 | 276 |
| Msa0693970 | MtrunA17_Chr3g0080341 | 37.168 | 339 | 151 | 14 | 18 | 351 | 20 | 301 | 9.11e-43 | 151 |
| Msa0693970 | MtrunA17_Chr7g0266211 | 33.659 | 410 | 179 | 15 | 24 | 369 | 45 | 425 | 1.25e-35 | 135 |
| Msa0693970 | MtrunA17_Chr6g0460301 | 33.423 | 371 | 160 | 10 | 18 | 366 | 16 | 321 | 2.44e-33 | 126 |
| Msa0693970 | MtrunA17_Chr8g0355121 | 45.802 | 131 | 63 | 2 | 17 | 144 | 23 | 148 | 1.89e-29 | 115 |
| Msa0693970 | MtrunA17_Chr8g0355121 | 75.000 | 56 | 13 | 1 | 295 | 349 | 237 | 292 | 2.25e-15 | 76.3 |
| Msa0693970 | MtrunA17_Chr7g0254991 | 44.615 | 130 | 67 | 2 | 17 | 144 | 15 | 141 | 4.41e-26 | 106 |
| Msa0693970 | MtrunA17_Chr7g0254991 | 70.492 | 61 | 14 | 1 | 287 | 343 | 232 | 292 | 2.36e-16 | 79.3 |
| Msa0693970 | MtrunA17_Chr5g0440841 | 41.732 | 127 | 59 | 4 | 18 | 137 | 22 | 140 | 4.61e-16 | 77.4 |
| Msa0693970 | MtrunA17_Chr2g0321381 | 35.294 | 136 | 68 | 4 | 19 | 142 | 23 | 150 | 1.72e-14 | 73.6 |
| Msa0693970 | MtrunA17_Chr2g0321411 | 50.575 | 87 | 41 | 2 | 285 | 370 | 194 | 279 | 3.64e-13 | 69.3 |
| Msa0693970 | MtrunA17_Chr1g0201751 | 60.377 | 53 | 21 | 0 | 295 | 347 | 157 | 209 | 2.13e-12 | 66.6 |
| Msa0693970 | MtrunA17_Chr5g0405951 | 51.220 | 82 | 23 | 2 | 300 | 364 | 166 | 247 | 5.86e-12 | 65.1 |
| Msa0693970 | MtrunA17_Chr4g0051101 | 60.377 | 53 | 21 | 0 | 295 | 347 | 125 | 177 | 1.29e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0693970 | AT1G49720.1 | 46.272 | 389 | 159 | 12 | 18 | 375 | 23 | 392 | 6.41e-91 | 278 |
| Msa0693970 | AT1G49720.3 | 46.272 | 389 | 159 | 12 | 18 | 375 | 23 | 392 | 6.41e-91 | 278 |
| Msa0693970 | AT4G34000.1 | 44.470 | 443 | 152 | 18 | 15 | 375 | 24 | 454 | 9.39e-90 | 278 |
| Msa0693970 | AT4G34000.4 | 44.470 | 443 | 152 | 18 | 15 | 375 | 24 | 454 | 9.39e-90 | 278 |
| Msa0693970 | AT4G34000.2 | 44.470 | 443 | 152 | 18 | 15 | 375 | 24 | 454 | 9.39e-90 | 278 |
| Msa0693970 | AT1G45249.1 | 47.585 | 414 | 143 | 17 | 18 | 375 | 21 | 416 | 6.69e-89 | 274 |
| Msa0693970 | AT1G45249.7 | 47.585 | 414 | 143 | 17 | 18 | 375 | 36 | 431 | 7.91e-89 | 275 |
| Msa0693970 | AT1G45249.6 | 47.585 | 414 | 143 | 17 | 18 | 375 | 36 | 431 | 7.91e-89 | 275 |
| Msa0693970 | AT1G49720.2 | 46.703 | 364 | 149 | 11 | 18 | 355 | 23 | 367 | 1.35e-86 | 268 |
| Msa0693970 | AT3G19290.3 | 44.104 | 424 | 163 | 14 | 10 | 375 | 25 | 432 | 6.80e-86 | 267 |
| Msa0693970 | AT3G19290.1 | 44.313 | 422 | 164 | 14 | 10 | 375 | 25 | 431 | 7.77e-86 | 267 |
| Msa0693970 | AT3G19290.5 | 44.313 | 422 | 164 | 14 | 10 | 375 | 25 | 431 | 7.77e-86 | 267 |
| Msa0693970 | AT1G45249.3 | 46.353 | 425 | 143 | 18 | 18 | 375 | 21 | 427 | 3.80e-85 | 265 |
| Msa0693970 | AT4G34000.3 | 44.363 | 408 | 139 | 17 | 15 | 346 | 24 | 419 | 2.36e-82 | 258 |
| Msa0693970 | AT3G19290.4 | 43.719 | 398 | 157 | 12 | 10 | 355 | 25 | 407 | 5.95e-81 | 253 |
| Msa0693970 | AT1G45249.10 | 44.321 | 361 | 131 | 16 | 18 | 326 | 21 | 363 | 4.46e-64 | 209 |
| Msa0693970 | AT1G45249.5 | 44.321 | 361 | 131 | 16 | 18 | 326 | 21 | 363 | 4.46e-64 | 209 |
| Msa0693970 | AT1G45249.4 | 43.158 | 380 | 139 | 18 | 18 | 338 | 21 | 382 | 9.37e-63 | 206 |
| Msa0693970 | AT1G45249.8 | 43.158 | 380 | 139 | 18 | 18 | 338 | 21 | 382 | 9.37e-63 | 206 |
| Msa0693970 | AT1G45249.2 | 43.158 | 380 | 139 | 18 | 18 | 338 | 21 | 382 | 9.37e-63 | 206 |
| Msa0693970 | AT1G45249.9 | 43.158 | 380 | 139 | 18 | 18 | 338 | 21 | 382 | 9.37e-63 | 206 |
| Msa0693970 | AT3G19290.2 | 41.962 | 367 | 144 | 13 | 10 | 323 | 25 | 375 | 7.75e-62 | 204 |
| Msa0693970 | AT5G42910.1 | 35.946 | 370 | 169 | 15 | 13 | 352 | 15 | 346 | 2.37e-39 | 144 |
| Msa0693970 | AT3G56850.1 | 49.306 | 144 | 57 | 5 | 10 | 145 | 8 | 143 | 6.73e-31 | 119 |
| Msa0693970 | AT3G56850.1 | 57.143 | 91 | 31 | 3 | 289 | 375 | 211 | 297 | 2.03e-16 | 79.3 |
| Msa0693970 | AT2G41070.5 | 35.503 | 169 | 83 | 2 | 10 | 173 | 8 | 155 | 1.01e-25 | 104 |
| Msa0693970 | AT2G41070.5 | 65.672 | 67 | 20 | 1 | 289 | 352 | 177 | 243 | 1.62e-16 | 79.0 |
| Msa0693970 | AT2G41070.3 | 35.503 | 169 | 83 | 2 | 10 | 173 | 8 | 155 | 1.53e-25 | 104 |
| Msa0693970 | AT2G41070.3 | 74.138 | 58 | 12 | 1 | 289 | 343 | 177 | 234 | 5.44e-16 | 77.8 |
| Msa0693970 | AT2G41070.1 | 35.503 | 169 | 83 | 2 | 10 | 173 | 8 | 155 | 1.53e-25 | 104 |
| Msa0693970 | AT2G41070.1 | 74.138 | 58 | 12 | 1 | 289 | 343 | 177 | 234 | 5.44e-16 | 77.8 |
| Msa0693970 | AT2G41070.2 | 35.503 | 169 | 83 | 2 | 10 | 173 | 8 | 155 | 1.53e-25 | 104 |
| Msa0693970 | AT2G41070.2 | 74.138 | 58 | 12 | 1 | 289 | 343 | 177 | 234 | 5.44e-16 | 77.8 |
| Msa0693970 | AT2G41070.4 | 35.503 | 169 | 83 | 2 | 10 | 173 | 17 | 164 | 1.61e-25 | 104 |
| Msa0693970 | AT2G41070.4 | 74.138 | 58 | 12 | 1 | 289 | 343 | 186 | 243 | 4.72e-16 | 77.8 |
| Msa0693970 | AT3G44460.1 | 44.118 | 136 | 54 | 6 | 18 | 140 | 35 | 161 | 4.10e-20 | 90.5 |
| Msa0693970 | AT2G36270.1 | 35.135 | 185 | 60 | 3 | 16 | 140 | 35 | 219 | 2.99e-19 | 89.4 |
| Msa0693970 | AT2G36270.1 | 67.606 | 71 | 20 | 1 | 288 | 355 | 341 | 411 | 4.34e-18 | 85.9 |
| Msa0693970 | AT2G36270.2 | 35.135 | 185 | 60 | 3 | 16 | 140 | 35 | 219 | 2.99e-19 | 89.4 |
| Msa0693970 | AT2G36270.2 | 67.606 | 71 | 20 | 1 | 288 | 355 | 341 | 411 | 4.34e-18 | 85.9 |
| Msa0693970 | AT2G36270.3 | 35.326 | 184 | 59 | 3 | 17 | 140 | 36 | 219 | 4.61e-19 | 88.6 |
| Msa0693970 | AT2G36270.3 | 63.636 | 77 | 22 | 2 | 288 | 361 | 341 | 414 | 4.77e-18 | 85.9 |
| Msa0693970 | AT4G35900.1 | 53.333 | 75 | 30 | 2 | 301 | 375 | 216 | 285 | 2.08e-13 | 70.5 |
| Msa0693970 | AT2G17770.2 | 51.316 | 76 | 32 | 2 | 300 | 375 | 125 | 195 | 1.17e-12 | 66.6 |
| Msa0693970 | AT5G44080.1 | 63.793 | 58 | 20 | 1 | 288 | 344 | 219 | 276 | 1.19e-12 | 68.6 |
| Msa0693970 | AT1G03970.1 | 60.656 | 61 | 23 | 1 | 288 | 347 | 175 | 235 | 3.07e-12 | 66.6 |
Find 121 sgRNAs with CRISPR-Local
Find 267 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCTACAGTTGTAGGTTTC+GGG | 0.224383 | 4_4:+63221033 | None:intergenic |
| TATGATACAGGCAGAGTTTA+TGG | 0.238284 | 4_4:-63220306 | Msa0693970:intron |
| CTAAACCATTCATTATTATT+TGG | 0.243582 | 4_4:+63221218 | None:intergenic |
| AGAGAAAAGTTGATGAAGTT+TGG | 0.248226 | 4_4:-63221379 | Msa0693970:CDS |
| CAACAACCAAATGGAAATAA+TGG | 0.257332 | 4_4:-63221152 | Msa0693970:CDS |
| TCTGAACGATCTTCAGATTT+GGG | 0.259642 | 4_4:+63223392 | None:intergenic |
| CCTAATGTTGGTTGTCTTTG+AGG | 0.269893 | 4_4:+63221323 | None:intergenic |
| GTCTGAACGATCTTCAGATT+TGG | 0.301160 | 4_4:+63223391 | None:intergenic |
| TTACCACCATTTGGGTTGTT+AGG | 0.303651 | 4_4:+63221446 | None:intergenic |
| GAAGAAAATGCTACAGTTGT+AGG | 0.325476 | 4_4:+63221026 | None:intergenic |
| TACTTGAGAAGGACACTTAC+AGG | 0.325650 | 4_4:-63220236 | Msa0693970:CDS |
| CTTGCTAGATTAACACTTCC+AGG | 0.329485 | 4_4:+63221635 | None:intergenic |
| AATGCTACAGTTGTAGGTTT+CGG | 0.329976 | 4_4:+63221032 | None:intergenic |
| TTACTTCCTGGAGAAGTAAC+AGG | 0.334643 | 4_4:+63220906 | None:intergenic |
| GGAGGAAGAGGAACATGTTT+AGG | 0.346580 | 4_4:+63221101 | None:intergenic |
| AACAACCAAATGGAAATAAT+GGG | 0.348398 | 4_4:-63221151 | Msa0693970:CDS |
| TCAATTTGTTGAGCATGATT+AGG | 0.349738 | 4_4:+63221245 | None:intergenic |
| AGAAACATGGACAGTCTAAC+AGG | 0.354199 | 4_4:+63219575 | None:intergenic |
| CTCCCTCTGTTGATTGCATA+AGG | 0.361407 | 4_4:+63220825 | None:intergenic |
| AGCTAATATGTATAGGTATT+AGG | 0.365572 | 4_4:-63220100 | Msa0693970:three_prime_UTR |
| ATAAAATAAATATCTTCATA+TGG | 0.371925 | 4_4:-63223468 | Msa0693970:five_prime_UTR |
| TTTGCAAATTACCACCATTT+GGG | 0.377028 | 4_4:+63221438 | None:intergenic |
| ATCTTCAGATTTGGGGTGTA+TGG | 0.377957 | 4_4:+63223400 | None:intergenic |
| AAGTGTGTTCCTGTAGAAAA+AGG | 0.390691 | 4_4:-63220801 | Msa0693970:CDS |
| GAGGTCACGGGCTCGCAAAC+AGG | 0.396241 | 4_4:-63220730 | Msa0693970:intron |
| CTCCTGTCCTTGTGACATAA+TGG | 0.398467 | 4_4:+63220170 | None:intergenic |
| ATATCCCCATTATTTCCATT+TGG | 0.401525 | 4_4:+63221146 | None:intergenic |
| AAAGACTTAAAGCAGAAGTA+AGG | 0.408541 | 4_4:+63221709 | None:intergenic |
| CTGTTGATTGCATAAGGAAT+TGG | 0.411579 | 4_4:+63220831 | None:intergenic |
| ATGAGTTACAAAGCACCGTT+GGG | 0.419210 | 4_4:-63221583 | Msa0693970:CDS |
| AACATTAGGTGAAGTGACTT+TGG | 0.430676 | 4_4:-63221309 | Msa0693970:CDS |
| CCTCAAAGACAACCAACATT+AGG | 0.434960 | 4_4:-63221323 | Msa0693970:CDS |
| CTGCTTTAAGTCTTTAAAAG+TGG | 0.437653 | 4_4:-63221701 | Msa0693970:five_prime_UTR |
| GTCCATGTTTCTCACCTCTC+TGG | 0.438855 | 4_4:-63219564 | Msa0693970:three_prime_UTR |
| TTTCTCTGACTAAGTGTCCT+TGG | 0.439082 | 4_4:+63221395 | None:intergenic |
| CTTGGCTTTCAACAACCAAA+TGG | 0.439959 | 4_4:-63221161 | Msa0693970:CDS |
| GGAATTGGTGACAGTAAAGT+AGG | 0.441332 | 4_4:+63220846 | None:intergenic |
| GGCTGAAGTTGCAAAACTTA+AGG | 0.442265 | 4_4:-63220447 | Msa0693970:CDS |
| TATGGAAATGCAGAAAAGTA+AGG | 0.444656 | 4_4:-63220288 | Msa0693970:CDS |
| GAAGGCCTACACTGTTGAAC+TGG | 0.444681 | 4_4:-63220471 | Msa0693970:intron |
| CGAGGAATTACAAAGAAAAC+AGG | 0.444987 | 4_4:-63220417 | Msa0693970:intron |
| CAAGCATTGACATCTCTAAC+TGG | 0.446103 | 4_4:-63221488 | Msa0693970:CDS |
| GCATTGTTTAGCAAATGAAT+AGG | 0.446181 | 4_4:+63221002 | None:intergenic |
| TTAACTCACTCGTGTATGTT+CGG | 0.453359 | 4_4:+63223328 | None:intergenic |
| GCAGAAAAGTAAGGAGGATC+TGG | 0.454613 | 4_4:-63220279 | Msa0693970:CDS |
| TGCTTTAAGTCTTTAAAAGT+GGG | 0.454625 | 4_4:-63221700 | Msa0693970:five_prime_UTR |
| TGATTCAAGTTAATTGATGA+AGG | 0.454755 | 4_4:+63221080 | None:intergenic |
| CGTGTAAAACAGAAAATACA+TGG | 0.456073 | 4_4:+63219493 | None:intergenic |
| GTAGCTCCTGTTACTTCTCC+AGG | 0.461528 | 4_4:-63220912 | Msa0693970:CDS |
| TTACGCTTTGTAATCAAATC+CGG | 0.464033 | 4_4:+63220876 | None:intergenic |
| AAAGACCAAATAATAATGAA+TGG | 0.465002 | 4_4:-63221223 | Msa0693970:CDS |
| AACAATAACACCAATCTACT+TGG | 0.466588 | 4_4:-63221179 | Msa0693970:CDS |
| GGACAGGAGTATTGTATGTA+AGG | 0.469582 | 4_4:-63220156 | Msa0693970:three_prime_UTR |
| AAAAGTTGATGAAGTTTGGA+GGG | 0.481612 | 4_4:-63221375 | Msa0693970:CDS |
| GAACATACACGAGTGAGTTA+AGG | 0.481910 | 4_4:-63223326 | Msa0693970:intron |
| GGATAGTAGCTAATATGTAT+AGG | 0.482563 | 4_4:-63220107 | Msa0693970:three_prime_UTR |
| AGGGATTTGATGAAAGATAG+TGG | 0.487452 | 4_4:-63221356 | Msa0693970:CDS |
| GAGAATCAGCTGCGAGGTCA+CGG | 0.489882 | 4_4:-63220743 | Msa0693970:CDS |
| TTGCTAAACAATGCTCAACT+TGG | 0.492309 | 4_4:-63220993 | Msa0693970:CDS |
| GAAAAGTTGATGAAGTTTGG+AGG | 0.496145 | 4_4:-63221376 | Msa0693970:CDS |
| GGGTCAAAATGAACTTCGCT+TGG | 0.497946 | 4_4:-63221679 | Msa0693970:exon |
| TTAATTGATGAAGGAGGAAG+AGG | 0.498832 | 4_4:+63221089 | None:intergenic |
| GCTCCTGGTGTTGGAATGCA+TGG | 0.513973 | 4_4:-63220951 | Msa0693970:CDS |
| GTTGTAGGTTTCGGGAAAAG+AGG | 0.514222 | 4_4:+63221041 | None:intergenic |
| TCTCTAACTGGTGGAGGAGT+AGG | 0.517394 | 4_4:-63221476 | Msa0693970:CDS |
| AAATAGTTAATTACACAAGA+TGG | 0.517869 | 4_4:+63220038 | None:intergenic |
| GATGAGTTACAAAGCACCGT+TGG | 0.528137 | 4_4:-63221584 | Msa0693970:CDS |
| AGCCATTATGTCACAAGGAC+AGG | 0.531997 | 4_4:-63220172 | Msa0693970:three_prime_UTR |
| GAAGGACCTAACAACCCAAA+TGG | 0.541425 | 4_4:-63221452 | Msa0693970:CDS |
| AGAATCAGCTGCGAGGTCAC+GGG | 0.543539 | 4_4:-63220742 | Msa0693970:CDS |
| ATAAAATAAAATACTTGAGA+AGG | 0.546602 | 4_4:-63220247 | Msa0693970:CDS |
| TTCAGATTTGGGGTGTATGG+TGG | 0.549768 | 4_4:+63223403 | None:intergenic |
| TTGTTGAAAGCCAAGTAGAT+TGG | 0.562943 | 4_4:+63221169 | None:intergenic |
| TGAGGGAGTATATTGAAGAC+TGG | 0.563542 | 4_4:+63221612 | None:intergenic |
| GGTCAAAATGAACTTCGCTT+GGG | 0.564260 | 4_4:-63221678 | Msa0693970:exon |
| AAAGTCACTTCACCTAATGT+TGG | 0.567590 | 4_4:+63221311 | None:intergenic |
| ATTAGGTGAAGTGACTTTGG+AGG | 0.571566 | 4_4:-63221306 | Msa0693970:CDS |
| TCCAGGAAGTAAAATGTCGC+CGG | 0.577416 | 4_4:-63220895 | Msa0693970:CDS |
| GCAATGAGTGTGAAGACACC+TGG | 0.579770 | 4_4:-63221653 | Msa0693970:CDS |
| TTGACATCTCTAACTGGTGG+AGG | 0.580857 | 4_4:-63221482 | Msa0693970:CDS |
| AGTAACAGGAGCTACATTTG+AGG | 0.581644 | 4_4:+63220920 | None:intergenic |
| AATGGCAGAAGTGTAGCTCC+TGG | 0.582540 | 4_4:-63220966 | Msa0693970:CDS |
| TTCAAGTTAATTGATGAAGG+AGG | 0.584325 | 4_4:+63221083 | None:intergenic |
| TCACTCGTGTATGTTCGGTT+CGG | 0.586828 | 4_4:+63223333 | None:intergenic |
| GAATTGGTGACAGTAAAGTA+GGG | 0.593373 | 4_4:+63220847 | None:intergenic |
| CTGAACGATCTTCAGATTTG+GGG | 0.593647 | 4_4:+63223393 | None:intergenic |
| TTTGTAACTCATCAAAAGTG+AGG | 0.603693 | 4_4:+63221594 | None:intergenic |
| TTGTAACTCATCAAAAGTGA+GGG | 0.607665 | 4_4:+63221595 | None:intergenic |
| GCTTTAAGTCTTTAAAAGTG+GGG | 0.610670 | 4_4:-63221699 | Msa0693970:five_prime_UTR |
| TTCCTTATGCAATCAACAGA+GGG | 0.613648 | 4_4:-63220827 | Msa0693970:CDS |
| GTAGGTTTCGGGAAAAGAGG+TGG | 0.615874 | 4_4:+63221044 | None:intergenic |
| ATAACTCACATAATCTACCA+TGG | 0.620608 | 4_4:+63220212 | None:intergenic |
| AATGCTCAACTTGGTAACAA+TGG | 0.622719 | 4_4:-63220984 | Msa0693970:CDS |
| ACAAATTTAATTGGCCAGAG+AGG | 0.624988 | 4_4:+63219550 | None:intergenic |
| GAAGGACACTTACAGGTCCA+TGG | 0.625288 | 4_4:-63220229 | Msa0693970:CDS |
| GGCCTACACTGTTGAACTGG+AGG | 0.626943 | 4_4:-63220468 | Msa0693970:CDS |
| GGTTTCGGGAAAAGAGGTGG+CGG | 0.626962 | 4_4:+63221047 | None:intergenic |
| GCATTGACATCTCTAACTGG+TGG | 0.627413 | 4_4:-63221485 | Msa0693970:CDS |
| ACTGGTGGAGGAGTAGGAGA+AGG | 0.628322 | 4_4:-63221470 | Msa0693970:CDS |
| GGCCAGAGAGGTGAGAAACA+TGG | 0.631777 | 4_4:+63219562 | None:intergenic |
| TCTTGCTAAAGTAGATCATG+AGG | 0.632156 | 4_4:+63221766 | None:intergenic |
| TGGACAGTCTAACAGGGCAC+AGG | 0.633770 | 4_4:+63219582 | None:intergenic |
| AAGGCTCATTGACTTTGCCA+AGG | 0.635721 | 4_4:-63221412 | Msa0693970:CDS |
| ATACAGGGTAATCATTCCAA+AGG | 0.635905 | 4_4:-63221805 | Msa0693970:intron |
| AGAAGTGTAGCTCCTGGTGT+TGG | 0.638301 | 4_4:-63220960 | Msa0693970:CDS |
| AAACCATGCATTCCAACACC+AGG | 0.648556 | 4_4:+63220948 | None:intergenic |
| CTTATGCAATCAACAGAGGG+AGG | 0.650517 | 4_4:-63220824 | Msa0693970:CDS |
| ACAACCAAATGGAAATAATG+GGG | 0.659967 | 4_4:-63221150 | Msa0693970:CDS |
| ATTCCTTATGCAATCAACAG+AGG | 0.662128 | 4_4:-63220828 | Msa0693970:CDS |
| GGAAATGCAGAAAAGTAAGG+AGG | 0.663949 | 4_4:-63220285 | Msa0693970:CDS |
| AATGAAGCCATTATGTCACA+AGG | 0.664340 | 4_4:-63220177 | Msa0693970:three_prime_UTR |
| GGACCTAACAACCCAAATGG+TGG | 0.667509 | 4_4:-63221449 | Msa0693970:CDS |
| AGCCTCCAGTTCAACAGTGT+AGG | 0.672463 | 4_4:+63220466 | None:intergenic |
| GAGTTACAAAGCACCGTTGG+GGG | 0.680332 | 4_4:-63221581 | Msa0693970:CDS |
| GAAACATGGACAGTCTAACA+GGG | 0.691728 | 4_4:+63219576 | None:intergenic |
| TTAACTTGAATCACTCTCAG+CGG | 0.703287 | 4_4:-63221070 | Msa0693970:CDS |
| AAAGTAAGGAGGATCTGGTG+CGG | 0.707722 | 4_4:-63220274 | Msa0693970:CDS |
| TGAGTTACAAAGCACCGTTG+GGG | 0.708748 | 4_4:-63221582 | Msa0693970:CDS |
| AGAATAGAGAATCAGCTGCG+AGG | 0.715608 | 4_4:-63220749 | Msa0693970:CDS |
| GTGTAAAACAGAAAATACAT+GGG | 0.716148 | 4_4:+63219494 | None:intergenic |
| AAAACTTAAGGAAGTAAACG+AGG | 0.734887 | 4_4:-63220435 | Msa0693970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATAAATATCTTCATA+TGG | - | chr4_4:63219505-63219524 | Msa0693970:three_prime_UTR | 10.0% |
| !! | TAAAAGGAAAGAAAAAAAAA+CGG | + | chr4_4:63219701-63219720 | None:intergenic | 15.0% |
| !! | TAAATAATTAGAGACATAAA+AGG | + | chr4_4:63219717-63219736 | None:intergenic | 15.0% |
| !! | AAAAACGTTATATACAAATT+TGG | + | chr4_4:63219913-63219932 | None:intergenic | 15.0% |
| !! | AAAATTGTGTCAATTAAAAT+GGG | + | chr4_4:63220307-63220326 | None:intergenic | 15.0% |
| !! | TAAGAAAAATGTAGAAATAA+AGG | - | chr4_4:63220342-63220361 | Msa0693970:intron | 15.0% |
| !! | AAGAAAAATGTAGAAATAAA+GGG | - | chr4_4:63220343-63220362 | Msa0693970:intron | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | - | chr4_4:63220407-63220426 | Msa0693970:intron | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | - | chr4_4:63220408-63220427 | Msa0693970:intron | 15.0% |
| !!! | CTTATATCCATAAATTTTTT+AGG | + | chr4_4:63220926-63220945 | None:intergenic | 15.0% |
| !! | GATTTATAAACTTCAAATTA+TGG | + | chr4_4:63221145-63221164 | None:intergenic | 15.0% |
| !! | AAGTTTATAAATCTAAATAC+AGG | - | chr4_4:63221152-63221171 | Msa0693970:CDS | 15.0% |
| !! | AGTTTATAAATCTAAATACA+GGG | - | chr4_4:63221153-63221172 | Msa0693970:CDS | 15.0% |
| !!! | AAATATTTGTTTCTTTTGAA+TGG | - | chr4_4:63222480-63222499 | Msa0693970:intron | 15.0% |
| !! | ATAAAATAAAATACTTGAGA+AGG | - | chr4_4:63222726-63222745 | Msa0693970:intron | 15.0% |
| !! | TGTAAAAACACAAATTTAAT+TGG | + | chr4_4:63223435-63223454 | None:intergenic | 15.0% |
| !!! | TTTTTACATATATTCATCAA+TGG | - | chr4_4:63223447-63223466 | Msa0693970:intron | 15.0% |
| !!! | TCAATTTCTATATGTGTTTT+TGG | - | chr4_4:63219933-63219952 | Msa0693970:intron | 20.0% |
| !!! | CAATTTCTATATGTGTTTTT+GGG | - | chr4_4:63219934-63219953 | Msa0693970:intron | 20.0% |
| !!! | TTAATTCTGCATAACTATTT+TGG | - | chr4_4:63220089-63220108 | Msa0693970:three_prime_UTR | 20.0% |
| !! | TTACCATGATAAAAAAAACT+TGG | + | chr4_4:63220124-63220143 | None:intergenic | 20.0% |
| !! | ATTGTTTAAAGAATCAAAAG+AGG | + | chr4_4:63220273-63220292 | None:intergenic | 20.0% |
| !! | CAAAATTGTGTCAATTAAAA+TGG | + | chr4_4:63220308-63220327 | None:intergenic | 20.0% |
| !! | AGAAAAATGTAGAAATAAAG+GGG | - | chr4_4:63220344-63220363 | Msa0693970:intron | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | - | chr4_4:63220367-63220386 | Msa0693970:intron | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | - | chr4_4:63220440-63220459 | Msa0693970:CDS | 20.0% |
| !! | GTTGTATTGAAAATTGAAAT+GGG | - | chr4_4:63220441-63220460 | Msa0693970:CDS | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | - | chr4_4:63220477-63220496 | Msa0693970:intron | 20.0% |
| !! | AAAGACCAAATAATAATGAA+TGG | - | chr4_4:63221750-63221769 | Msa0693970:five_prime_UTR | 20.0% |
| !! | CTAAACCATTCATTATTATT+TGG | + | chr4_4:63221758-63221777 | None:intergenic | 20.0% |
| !! | ATACATTATATGTGTATTGA+AGG | + | chr4_4:63222382-63222401 | None:intergenic | 20.0% |
| !! | TATTAAAATGATGTAAGCAT+TGG | - | chr4_4:63222436-63222455 | Msa0693970:intron | 20.0% |
| !! | AAATAGTTAATTACACAAGA+TGG | + | chr4_4:63222938-63222957 | None:intergenic | 20.0% |
| !! | AATAAAATTAAGTGAAAGAG+AGG | - | chr4_4:63223167-63223186 | Msa0693970:intron | 20.0% |
| !! | AATAATTGTTGTGATTTCAA+TGG | - | chr4_4:63223272-63223291 | Msa0693970:intron | 20.0% |
| ! | TAATTTATCATCACCTTATC+TGG | + | chr4_4:63219861-63219880 | None:intergenic | 25.0% |
| ! | AAATTATGCTATGTCTACAT+CGG | - | chr4_4:63219875-63219894 | Msa0693970:intron | 25.0% |
| ! | TTCATTTGTGAATCTTAGTT+AGG | - | chr4_4:63219961-63219980 | Msa0693970:intron | 25.0% |
| ! | CATATAATAACAGACAAATG+AGG | - | chr4_4:63219984-63220003 | Msa0693970:three_prime_UTR | 25.0% |
| !!! | ATGCCAAGTTTTTTTTATCA+TGG | - | chr4_4:63220118-63220137 | Msa0693970:three_prime_UTR | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | - | chr4_4:63220366-63220385 | Msa0693970:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | - | chr4_4:63220476-63220495 | Msa0693970:intron | 25.0% |
| ! | ATCTCAAAAGTTAGTTCAAA+CGG | + | chr4_4:63220631-63220650 | None:intergenic | 25.0% |
| !! | CAATATAGTAAGTTTTCAAC+TGG | + | chr4_4:63220664-63220683 | None:intergenic | 25.0% |
| ! | CAGTTGAAAACTTACTATAT+TGG | - | chr4_4:63220662-63220681 | Msa0693970:intron | 25.0% |
| ! | ATTAAACTGTTTATCCAAAG+AGG | + | chr4_4:63220823-63220842 | None:intergenic | 25.0% |
| ! | GAGCTATCCTAAAAAATTTA+TGG | - | chr4_4:63220916-63220935 | Msa0693970:CDS | 25.0% |
| !! | TGCTTTAAGTCTTTAAAAGT+GGG | - | chr4_4:63221273-63221292 | Msa0693970:CDS | 25.0% |
| ! | ATGAACTCTTGAAAAACATA+TGG | - | chr4_4:63221447-63221466 | Msa0693970:CDS | 25.0% |
| ! | AACAACCAAATGGAAATAAT+GGG | - | chr4_4:63221822-63221841 | Msa0693970:intron | 25.0% |
| !! | TGATTCAAGTTAATTGATGA+AGG | + | chr4_4:63221896-63221915 | None:intergenic | 25.0% |
| ! | ATAACAAGATCATAAGCTTA+AGG | - | chr4_4:63222400-63222419 | Msa0693970:intron | 25.0% |
| !!! | ATTTGTTTCTTTTGAATGGA+AGG | - | chr4_4:63222484-63222503 | Msa0693970:intron | 25.0% |
| !! | ATTACAATTTTACACTAGAC+AGG | - | chr4_4:63222845-63222864 | Msa0693970:intron | 25.0% |
| ! | AGCTAATATGTATAGGTATT+AGG | - | chr4_4:63222873-63222892 | Msa0693970:intron | 25.0% |
| ! | GTGTAAAACAGAAAATACAT+GGG | + | chr4_4:63223482-63223501 | None:intergenic | 25.0% |
| ! | CAAGTGTCTTTGAGTTTATA+AGG | + | chr4_4:63219544-63219563 | None:intergenic | 30.0% |
| AAGGAAAGAAAAAAAAACGG+CGG | + | chr4_4:63219698-63219717 | None:intergenic | 30.0% | |
| !! | CAAAAAGCATTAACCAGATA+AGG | - | chr4_4:63219845-63219864 | Msa0693970:intron | 30.0% |
| TTGTGTCAATTAAAATGGGT+TGG | + | chr4_4:63220303-63220322 | None:intergenic | 30.0% | |
| ! | TTGAAATGGGTCAGTTATTT+TGG | - | chr4_4:63220454-63220473 | Msa0693970:CDS | 30.0% |
| !! | TGAAATGGGTCAGTTATTTT+GGG | - | chr4_4:63220455-63220474 | Msa0693970:CDS | 30.0% |
| AAAGTTAGTTCAAACGGTAA+GGG | + | chr4_4:63220625-63220644 | None:intergenic | 30.0% | |
| AAAAGTTAGTTCAAACGGTA+AGG | + | chr4_4:63220626-63220645 | None:intergenic | 30.0% | |
| AAAGACTTAAAGCAGAAGTA+AGG | + | chr4_4:63221267-63221286 | None:intergenic | 30.0% | |
| ! | CTGCTTTAAGTCTTTAAAAG+TGG | - | chr4_4:63221272-63221291 | Msa0693970:CDS | 30.0% |
| ! | GCTTTAAGTCTTTAAAAGTG+GGG | - | chr4_4:63221274-63221293 | Msa0693970:CDS | 30.0% |
| TTGTAACTCATCAAAAGTGA+GGG | + | chr4_4:63221381-63221400 | None:intergenic | 30.0% | |
| TTTGTAACTCATCAAAAGTG+AGG | + | chr4_4:63221382-63221401 | None:intergenic | 30.0% | |
| ! | AGATTTTGGATCAATGAACA+TGG | - | chr4_4:63221424-63221443 | Msa0693970:CDS | 30.0% |
| TTTGCAAATTACCACCATTT+GGG | + | chr4_4:63221538-63221557 | None:intergenic | 30.0% | |
| ! | TTTTGCAAATTACCACCATT+TGG | + | chr4_4:63221539-63221558 | None:intergenic | 30.0% |
| !! | AGAGAAAAGTTGATGAAGTT+TGG | - | chr4_4:63221594-63221613 | Msa0693970:CDS | 30.0% |
| !! | AAAAGTTGATGAAGTTTGGA+GGG | - | chr4_4:63221598-63221617 | Msa0693970:CDS | 30.0% |
| !! | TCAATTTGTTGAGCATGATT+AGG | + | chr4_4:63221731-63221750 | None:intergenic | 30.0% |
| AACAATAACACCAATCTACT+TGG | - | chr4_4:63221794-63221813 | Msa0693970:five_prime_UTR | 30.0% | |
| CAACAACCAAATGGAAATAA+TGG | - | chr4_4:63221821-63221840 | Msa0693970:intron | 30.0% | |
| ACAACCAAATGGAAATAATG+GGG | - | chr4_4:63221823-63221842 | Msa0693970:intron | 30.0% | |
| ATATCCCCATTATTTCCATT+TGG | + | chr4_4:63221830-63221849 | None:intergenic | 30.0% | |
| ! | TTCAAGTTAATTGATGAAGG+AGG | + | chr4_4:63221893-63221912 | None:intergenic | 30.0% |
| GCATTGTTTAGCAAATGAAT+AGG | + | chr4_4:63221974-63221993 | None:intergenic | 30.0% | |
| TTACGCTTTGTAATCAAATC+CGG | + | chr4_4:63222100-63222119 | None:intergenic | 30.0% | |
| AAAACTTAAGGAAGTAAACG+AGG | - | chr4_4:63222538-63222557 | Msa0693970:intron | 30.0% | |
| TTACAGTTTCTGACTACATT+TGG | - | chr4_4:63222642-63222661 | Msa0693970:intron | 30.0% | |
| CTACATTTGGTATATGATAC+AGG | - | chr4_4:63222655-63222674 | Msa0693970:intron | 30.0% | |
| TATGGAAATGCAGAAAAGTA+AGG | - | chr4_4:63222685-63222704 | Msa0693970:intron | 30.0% | |
| ATAACTCACATAATCTACCA+TGG | + | chr4_4:63222764-63222783 | None:intergenic | 30.0% | |
| GGATAGTAGCTAATATGTAT+AGG | - | chr4_4:63222866-63222885 | Msa0693970:intron | 30.0% | |
| !!! | GAATTGCGTTTTGATTTTAC+TGG | + | chr4_4:63223079-63223098 | None:intergenic | 30.0% |
| AATTGTTGTGATTTCAATGG+AGG | - | chr4_4:63223275-63223294 | Msa0693970:intron | 30.0% | |
| CGTGTAAAACAGAAAATACA+TGG | + | chr4_4:63223483-63223502 | None:intergenic | 30.0% | |
| TCTGAACGATCTTCAGATTT+GGG | + | chr4_4:63219584-63219603 | None:intergenic | 35.0% | |
| TTAACTCACTCGTGTATGTT+CGG | + | chr4_4:63219648-63219667 | None:intergenic | 35.0% | |
| TTTGATCTCACTTGTCTCTA+TGG | - | chr4_4:63220008-63220027 | Msa0693970:three_prime_UTR | 35.0% | |
| TTGATCTCACTTGTCTCTAT+GGG | - | chr4_4:63220009-63220028 | Msa0693970:three_prime_UTR | 35.0% | |
| ! | AGCTAACAGATGCTTTTAAG+AGG | - | chr4_4:63220144-63220163 | Msa0693970:three_prime_UTR | 35.0% |
| !! | TGTCAATTAAAATGGGTTGG+AGG | + | chr4_4:63220300-63220319 | None:intergenic | 35.0% |
| TGTAGAAATAAAGGGGAAAG+TGG | - | chr4_4:63220351-63220370 | Msa0693970:intron | 35.0% | |
| AGAAAATGGGTCAGTTATTC+CGG | - | chr4_4:63220490-63220509 | Msa0693970:intron | 35.0% | |
| ! | GAAGTTGTTTGCAGTTTGTT+CGG | - | chr4_4:63220553-63220572 | Msa0693970:intron | 35.0% |
| ! | TAGTAAGTTTTCAACTGGCT+TGG | + | chr4_4:63220659-63220678 | None:intergenic | 35.0% |
| !! | CTTGTACCATCTATTTTGAG+AGG | - | chr4_4:63220742-63220761 | Msa0693970:CDS | 35.0% |
| TGTAAGCCTCTCAAAATAGA+TGG | + | chr4_4:63220751-63220770 | None:intergenic | 35.0% | |
| TCAATAGAACTGTGAAGTTG+TGG | - | chr4_4:63220796-63220815 | Msa0693970:CDS | 35.0% | |
| CAATAGAACTGTGAAGTTGT+GGG | - | chr4_4:63220797-63220816 | Msa0693970:CDS | 35.0% | |
| AGAATGTTTGAGTGAGCTTA+TGG | + | chr4_4:63220984-63221003 | None:intergenic | 35.0% | |
| ATACAGGGTAATCATTCCAA+AGG | - | chr4_4:63221168-63221187 | Msa0693970:CDS | 35.0% | |
| TCTTGCTAAAGTAGATCATG+AGG | + | chr4_4:63221210-63221229 | None:intergenic | 35.0% | |
| ! | GGTGGTAATTTGCAAAAACA+AGG | - | chr4_4:63221542-63221561 | Msa0693970:CDS | 35.0% |
| !! | GAAAAGTTGATGAAGTTTGG+AGG | - | chr4_4:63221597-63221616 | Msa0693970:CDS | 35.0% |
| AGGGATTTGATGAAAGATAG+TGG | - | chr4_4:63221617-63221636 | Msa0693970:CDS | 35.0% | |
| AAAGTCACTTCACCTAATGT+TGG | + | chr4_4:63221665-63221684 | None:intergenic | 35.0% | |
| AACATTAGGTGAAGTGACTT+TGG | - | chr4_4:63221664-63221683 | Msa0693970:CDS | 35.0% | |
| TTGTTGAAAGCCAAGTAGAT+TGG | + | chr4_4:63221807-63221826 | None:intergenic | 35.0% | |
| TTAATTGATGAAGGAGGAAG+AGG | + | chr4_4:63221887-63221906 | None:intergenic | 35.0% | |
| ! | TTAACTTGAATCACTCTCAG+CGG | - | chr4_4:63221903-63221922 | Msa0693970:intron | 35.0% |
| AATGCTACAGTTGTAGGTTT+CGG | + | chr4_4:63221944-63221963 | None:intergenic | 35.0% | |
| GAAGAAAATGCTACAGTTGT+AGG | + | chr4_4:63221950-63221969 | None:intergenic | 35.0% | |
| TTGCTAAACAATGCTCAACT+TGG | - | chr4_4:63221980-63221999 | Msa0693970:intron | 35.0% | |
| ! | AATGCTCAACTTGGTAACAA+TGG | - | chr4_4:63221989-63222008 | Msa0693970:intron | 35.0% |
| ! | GAATTGGTGACAGTAAAGTA+GGG | + | chr4_4:63222129-63222148 | None:intergenic | 35.0% |
| ! | CTGTTGATTGCATAAGGAAT+TGG | + | chr4_4:63222145-63222164 | None:intergenic | 35.0% |
| ATTCCTTATGCAATCAACAG+AGG | - | chr4_4:63222145-63222164 | Msa0693970:intron | 35.0% | |
| TTCCTTATGCAATCAACAGA+GGG | - | chr4_4:63222146-63222165 | Msa0693970:intron | 35.0% | |
| AAGTGTGTTCCTGTAGAAAA+AGG | - | chr4_4:63222172-63222191 | Msa0693970:intron | 35.0% | |
| ! | CTTTCAACACCTTTTTCTAC+AGG | + | chr4_4:63222184-63222203 | None:intergenic | 35.0% |
| !! | CTGTAGAAAAAGGTGTTGAA+AGG | - | chr4_4:63222182-63222201 | Msa0693970:intron | 35.0% |
| GATCAGAGAAACAAAACAGA+TGG | + | chr4_4:63222323-63222342 | None:intergenic | 35.0% | |
| CGAGGAATTACAAAGAAAAC+AGG | - | chr4_4:63222556-63222575 | Msa0693970:intron | 35.0% | |
| TATGATACAGGCAGAGTTTA+TGG | - | chr4_4:63222667-63222686 | Msa0693970:intron | 35.0% | |
| AATGAAGCCATTATGTCACA+AGG | - | chr4_4:63222796-63222815 | Msa0693970:intron | 35.0% | |
| ATTTACCTAACGATGTCGTT+TGG | - | chr4_4:63223194-63223213 | Msa0693970:intron | 35.0% | |
| ! | TTGAGGCTCATAGATTTTAG+AGG | - | chr4_4:63223321-63223340 | Msa0693970:intron | 35.0% |
| ACAAATTTAATTGGCCAGAG+AGG | + | chr4_4:63223426-63223445 | None:intergenic | 35.0% | |
| ! | ATCTTCAGATTTGGGGTGTA+TGG | + | chr4_4:63219576-63219595 | None:intergenic | 40.0% |
| CTGAACGATCTTCAGATTTG+GGG | + | chr4_4:63219583-63219602 | None:intergenic | 40.0% | |
| GTCTGAACGATCTTCAGATT+TGG | + | chr4_4:63219585-63219604 | None:intergenic | 40.0% | |
| TTCGGCAAAAACGTTGTTGT+TGG | + | chr4_4:63219625-63219644 | None:intergenic | 40.0% | |
| GAACATACACGAGTGAGTTA+AGG | - | chr4_4:63219647-63219666 | Msa0693970:intron | 40.0% | |
| TATTAGCGATCGTGTCACAT+CGG | - | chr4_4:63219791-63219810 | Msa0693970:intron | 40.0% | |
| GAAAATGGGTCAGTTATTCC+GGG | - | chr4_4:63220491-63220510 | Msa0693970:intron | 40.0% | |
| !! | TCATGAGGTGTTTTCAGTCA+GGG | + | chr4_4:63221195-63221214 | None:intergenic | 40.0% |
| !! | ATCATGAGGTGTTTTCAGTC+AGG | + | chr4_4:63221196-63221215 | None:intergenic | 40.0% |
| GGTCAAAATGAACTTCGCTT+GGG | - | chr4_4:63221295-63221314 | Msa0693970:CDS | 40.0% | |
| CTTGCTAGATTAACACTTCC+AGG | + | chr4_4:63221341-63221360 | None:intergenic | 40.0% | |
| ! | TGAGGGAGTATATTGAAGAC+TGG | + | chr4_4:63221364-63221383 | None:intergenic | 40.0% |
| !! | ATGAGTTACAAAGCACCGTT+GGG | - | chr4_4:63221390-63221409 | Msa0693970:CDS | 40.0% |
| !! | CAAGCATTGACATCTCTAAC+TGG | - | chr4_4:63221485-63221504 | Msa0693970:CDS | 40.0% |
| !! | TTACCACCATTTGGGTTGTT+AGG | + | chr4_4:63221530-63221549 | None:intergenic | 40.0% |
| TTTCTCTGACTAAGTGTCCT+TGG | + | chr4_4:63221581-63221600 | None:intergenic | 40.0% | |
| ! | CCTAATGTTGGTTGTCTTTG+AGG | + | chr4_4:63221653-63221672 | None:intergenic | 40.0% |
| CCTCAAAGACAACCAACATT+AGG | - | chr4_4:63221650-63221669 | Msa0693970:CDS | 40.0% | |
| ATTAGGTGAAGTGACTTTGG+AGG | - | chr4_4:63221667-63221686 | Msa0693970:CDS | 40.0% | |
| !! | AGTGACTTTGGAGGAGTTTT+TGG | - | chr4_4:63221676-63221695 | Msa0693970:exon | 40.0% |
| ! | CTTGGCTTTCAACAACCAAA+TGG | - | chr4_4:63221812-63221831 | Msa0693970:intron | 40.0% |
| ATGCTACAGTTGTAGGTTTC+GGG | + | chr4_4:63221943-63221962 | None:intergenic | 40.0% | |
| AGTAACAGGAGCTACATTTG+AGG | + | chr4_4:63222056-63222075 | None:intergenic | 40.0% | |
| TTACTTCCTGGAGAAGTAAC+AGG | + | chr4_4:63222070-63222089 | None:intergenic | 40.0% | |
| ! | GGAATTGGTGACAGTAAAGT+AGG | + | chr4_4:63222130-63222149 | None:intergenic | 40.0% |
| GGCTGAAGTTGCAAAACTTA+AGG | - | chr4_4:63222526-63222545 | Msa0693970:intron | 40.0% | |
| GGAAATGCAGAAAAGTAAGG+AGG | - | chr4_4:63222688-63222707 | Msa0693970:intron | 40.0% | |
| TACTTGAGAAGGACACTTAC+AGG | - | chr4_4:63222737-63222756 | Msa0693970:intron | 40.0% | |
| !! | GGACAGGAGTATTGTATGTA+AGG | - | chr4_4:63222817-63222836 | Msa0693970:intron | 40.0% |
| AGCCTCCTATTTCATAGGAA+CGG | + | chr4_4:63223033-63223052 | None:intergenic | 40.0% | |
| TTCCTATGAAATAGGAGGCT+CGG | - | chr4_4:63223033-63223052 | Msa0693970:intron | 40.0% | |
| ACATTCCAAACGACATCGTT+AGG | + | chr4_4:63223202-63223221 | None:intergenic | 40.0% | |
| GTAGGAAAGGGAAAAACGAA+TGG | - | chr4_4:63223234-63223253 | Msa0693970:intron | 40.0% | |
| TGTTGTGATTTCAATGGAGG+TGG | - | chr4_4:63223278-63223297 | Msa0693970:intron | 40.0% | |
| GTTGTGATTTCAATGGAGGT+GGG | - | chr4_4:63223279-63223298 | Msa0693970:intron | 40.0% | |
| !! | GCTCATAGATTTTAGAGGCT+CGG | - | chr4_4:63223326-63223345 | Msa0693970:intron | 40.0% |
| GAAACATGGACAGTCTAACA+GGG | + | chr4_4:63223400-63223419 | None:intergenic | 40.0% | |
| AGAAACATGGACAGTCTAAC+AGG | + | chr4_4:63223401-63223420 | None:intergenic | 40.0% | |
| ! | TTCAGATTTGGGGTGTATGG+TGG | + | chr4_4:63219573-63219592 | None:intergenic | 45.0% |
| TCACTCGTGTATGTTCGGTT+CGG | + | chr4_4:63219643-63219662 | None:intergenic | 45.0% | |
| ATTAGCGATCGTGTCACATC+GGG | - | chr4_4:63219792-63219811 | Msa0693970:intron | 45.0% | |
| ATCTCACTTGTCTCTATGGG+TGG | - | chr4_4:63220012-63220031 | Msa0693970:three_prime_UTR | 45.0% | |
| ! | TCTCGCATTGATCAGATTCC+TGG | - | chr4_4:63220578-63220597 | Msa0693970:intron | 45.0% |
| ! | CTCGCATTGATCAGATTCCT+GGG | - | chr4_4:63220579-63220598 | Msa0693970:intron | 45.0% |
| TCCTGGGTAGTTAGATGTGT+TGG | - | chr4_4:63220595-63220614 | Msa0693970:intron | 45.0% | |
| TCCAACACATCTAACTACCC+AGG | + | chr4_4:63220599-63220618 | None:intergenic | 45.0% | |
| ACACTGGTGCCTATAACTTG+TGG | - | chr4_4:63221049-63221068 | Msa0693970:CDS | 45.0% | |
| TTCCACACGCCACAAGTTAT+AGG | + | chr4_4:63221061-63221080 | None:intergenic | 45.0% | |
| TTGTGGCGTGTGGAATTTCA+AGG | - | chr4_4:63221066-63221085 | Msa0693970:CDS | 45.0% | |
| ! | TGTTTTCAGTCAGGGTCCTT+TGG | + | chr4_4:63221187-63221206 | None:intergenic | 45.0% |
| GGGTCAAAATGAACTTCGCT+TGG | - | chr4_4:63221294-63221313 | Msa0693970:CDS | 45.0% | |
| !! | GATGAGTTACAAAGCACCGT+TGG | - | chr4_4:63221389-63221408 | Msa0693970:CDS | 45.0% |
| !! | TGAGTTACAAAGCACCGTTG+GGG | - | chr4_4:63221391-63221410 | Msa0693970:CDS | 45.0% |
| ! | ATCTTTTCCAACTCCCCCAA+CGG | + | chr4_4:63221408-63221427 | None:intergenic | 45.0% |
| ! | GGGGGAGTTGGAAAAGATTT+TGG | - | chr4_4:63221410-63221429 | Msa0693970:CDS | 45.0% |
| ! | GCATTGACATCTCTAACTGG+TGG | - | chr4_4:63221488-63221507 | Msa0693970:CDS | 45.0% |
| TTGACATCTCTAACTGGTGG+AGG | - | chr4_4:63221491-63221510 | Msa0693970:CDS | 45.0% | |
| GAAGGACCTAACAACCCAAA+TGG | - | chr4_4:63221521-63221540 | Msa0693970:CDS | 45.0% | |
| !! | AAGGCTCATTGACTTTGCCA+AGG | - | chr4_4:63221561-63221580 | Msa0693970:CDS | 45.0% |
| GGAGGAAGAGGAACATGTTT+AGG | + | chr4_4:63221875-63221894 | None:intergenic | 45.0% | |
| GTTGTAGGTTTCGGGAAAAG+AGG | + | chr4_4:63221935-63221954 | None:intergenic | 45.0% | |
| AAACCATGCATTCCAACACC+AGG | + | chr4_4:63222028-63222047 | None:intergenic | 45.0% | |
| TCCAGGAAGTAAAATGTCGC+CGG | - | chr4_4:63222078-63222097 | Msa0693970:intron | 45.0% | |
| ! | CTCCCTCTGTTGATTGCATA+AGG | + | chr4_4:63222151-63222170 | None:intergenic | 45.0% |
| CTTATGCAATCAACAGAGGG+AGG | - | chr4_4:63222149-63222168 | Msa0693970:intron | 45.0% | |
| AGAATAGAGAATCAGCTGCG+AGG | - | chr4_4:63222224-63222243 | Msa0693970:intron | 45.0% | |
| GCAGAAAAGTAAGGAGGATC+TGG | - | chr4_4:63222694-63222713 | Msa0693970:intron | 45.0% | |
| AAAGTAAGGAGGATCTGGTG+CGG | - | chr4_4:63222699-63222718 | Msa0693970:intron | 45.0% | |
| AGCCATTATGTCACAAGGAC+AGG | - | chr4_4:63222801-63222820 | Msa0693970:intron | 45.0% | |
| CTCCTGTCCTTGTGACATAA+TGG | + | chr4_4:63222806-63222825 | None:intergenic | 45.0% | |
| AACCGAGCCTCCTATTTCAT+AGG | + | chr4_4:63223038-63223057 | None:intergenic | 45.0% | |
| ! | TTTTCCCTTTCCTACGACGT+AGG | + | chr4_4:63223229-63223248 | None:intergenic | 45.0% |
| !!! | TTATAATTTTTTTTTTTTTG+AGG | - | chr4_4:63223304-63223323 | Msa0693970:intron | 5.0% |
| TTAGCGATCGTGTCACATCG+GGG | - | chr4_4:63219793-63219812 | Msa0693970:intron | 50.0% | |
| ATGGGTCAGTTATTCCGGGA+CGG | - | chr4_4:63220495-63220514 | Msa0693970:intron | 50.0% | |
| TTCCCCTCCAATGCTGTTAG+AGG | - | chr4_4:63220699-63220718 | Msa0693970:intron | 50.0% | |
| TCCCCTCCAATGCTGTTAGA+GGG | - | chr4_4:63220700-63220719 | Msa0693970:intron | 50.0% | |
| TGTGAAGTTGTGGGCCTCTT+TGG | - | chr4_4:63220806-63220825 | Msa0693970:CDS | 50.0% | |
| GTAGACACCTCAACACACAC+TGG | - | chr4_4:63221033-63221052 | Msa0693970:CDS | 50.0% | |
| ATAGGCACCAGTGTGTGTTG+AGG | + | chr4_4:63221043-63221062 | None:intergenic | 50.0% | |
| ! | TGCCTATAACTTGTGGCGTG+TGG | - | chr4_4:63221056-63221075 | Msa0693970:CDS | 50.0% |
| GCAATGAGTGTGAAGACACC+TGG | - | chr4_4:63221320-63221339 | Msa0693970:CDS | 50.0% | |
| !! | GAGTTACAAAGCACCGTTGG+GGG | - | chr4_4:63221392-63221411 | Msa0693970:CDS | 50.0% |
| TCTCTAACTGGTGGAGGAGT+AGG | - | chr4_4:63221497-63221516 | Msa0693970:CDS | 50.0% | |
| GGACCTAACAACCCAAATGG+TGG | - | chr4_4:63221524-63221543 | Msa0693970:CDS | 50.0% | |
| !!! | GAGGAGTTTTTGGTGAGAGC+TGG | - | chr4_4:63221686-63221705 | Msa0693970:exon | 50.0% |
| GTAGGTTTCGGGAAAAGAGG+TGG | + | chr4_4:63221932-63221951 | None:intergenic | 50.0% | |
| ! | AATGGCAGAAGTGTAGCTCC+TGG | - | chr4_4:63222007-63222026 | Msa0693970:intron | 50.0% |
| ! | AGAAGTGTAGCTCCTGGTGT+TGG | - | chr4_4:63222013-63222032 | Msa0693970:intron | 50.0% |
| ! | GTAGCTCCTGTTACTTCTCC+AGG | - | chr4_4:63222061-63222080 | Msa0693970:intron | 50.0% |
| ! | TCCGGCGACATTTTACTTCC+TGG | + | chr4_4:63222082-63222101 | None:intergenic | 50.0% |
| GAAGGCCTACACTGTTGAAC+TGG | - | chr4_4:63222502-63222521 | Msa0693970:intron | 50.0% | |
| AGCCTCCAGTTCAACAGTGT+AGG | + | chr4_4:63222510-63222529 | None:intergenic | 50.0% | |
| GAAGGACACTTACAGGTCCA+TGG | - | chr4_4:63222744-63222763 | Msa0693970:intron | 50.0% | |
| ATTAGACCAGCCTGTCTGTC+AGG | - | chr4_4:63223006-63223025 | Msa0693970:intron | 50.0% | |
| TTAGACCAGCCTGTCTGTCA+GGG | - | chr4_4:63223007-63223026 | Msa0693970:intron | 50.0% | |
| CAGGGCCGTTCCTATGAAAT+AGG | - | chr4_4:63223025-63223044 | Msa0693970:intron | 50.0% | |
| GGCCGTTCCTATGAAATAGG+AGG | - | chr4_4:63223028-63223047 | Msa0693970:intron | 50.0% | |
| GAATGTCACTCCTACGTCGT+AGG | - | chr4_4:63223216-63223235 | Msa0693970:intron | 50.0% | |
| TCACTCCTACGTCGTAGGAA+AGG | - | chr4_4:63223221-63223240 | Msa0693970:intron | 50.0% | |
| CACTCCTACGTCGTAGGAAA+GGG | - | chr4_4:63223222-63223241 | Msa0693970:intron | 50.0% | |
| GTCCATGTTTCTCACCTCTC+TGG | - | chr4_4:63223409-63223428 | Msa0693970:five_prime_UTR | 50.0% | |
| ACTATTCGCACTGCTGCTGC+TGG | - | chr4_4:63220057-63220076 | Msa0693970:three_prime_UTR | 55.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | - | chr4_4:63220499-63220518 | Msa0693970:intron | 55.0% | |
| AAATGCTACTCCCTCCGTCC+CGG | + | chr4_4:63220512-63220531 | None:intergenic | 55.0% | |
| ! | CCCCTCTAACAGCATTGGAG+GGG | + | chr4_4:63220704-63220723 | None:intergenic | 55.0% |
| CCCCTCCAATGCTGTTAGAG+GGG | - | chr4_4:63220701-63220720 | Msa0693970:intron | 55.0% | |
| ! | CCCCCTCTAACAGCATTGGA+GGG | + | chr4_4:63220705-63220724 | None:intergenic | 55.0% |
| CCCTCCAATGCTGTTAGAGG+GGG | - | chr4_4:63220702-63220721 | Msa0693970:intron | 55.0% | |
| ! | ACCCCCTCTAACAGCATTGG+AGG | + | chr4_4:63220706-63220725 | None:intergenic | 55.0% |
| GCAACCCCCTCTAACAGCAT+TGG | + | chr4_4:63220709-63220728 | None:intergenic | 55.0% | |
| ACTGGTGGAGGAGTAGGAGA+AGG | - | chr4_4:63221503-63221522 | Msa0693970:CDS | 55.0% | |
| GGTTTCGGGAAAAGAGGTGG+CGG | + | chr4_4:63221929-63221948 | None:intergenic | 55.0% | |
| ! | GCTCCTGGTGTTGGAATGCA+TGG | - | chr4_4:63222022-63222041 | Msa0693970:intron | 55.0% |
| GAGAATCAGCTGCGAGGTCA+CGG | - | chr4_4:63222230-63222249 | Msa0693970:intron | 55.0% | |
| AGAATCAGCTGCGAGGTCAC+GGG | - | chr4_4:63222231-63222250 | Msa0693970:intron | 55.0% | |
| GGCCTACACTGTTGAACTGG+AGG | - | chr4_4:63222505-63222524 | Msa0693970:intron | 55.0% | |
| TTCTTGCACTCCCCAAGGTC+CGG | - | chr4_4:63223360-63223379 | Msa0693970:five_prime_UTR | 55.0% | |
| TGGACAGTCTAACAGGGCAC+AGG | + | chr4_4:63223394-63223413 | None:intergenic | 55.0% | |
| GGCCAGAGAGGTGAGAAACA+TGG | + | chr4_4:63223414-63223433 | None:intergenic | 55.0% | |
| ATTCGCACTGCTGCTGCTGG+TGG | - | chr4_4:63220060-63220079 | Msa0693970:three_prime_UTR | 60.0% | |
| GGTCAGTTATTCCGGGACGG+AGG | - | chr4_4:63220498-63220517 | Msa0693970:intron | 60.0% | |
| !! | CAAAGCACCGTTGGGGGAGT+TGG | - | chr4_4:63221398-63221417 | Msa0693970:CDS | 60.0% |
| TAGGAACGGCCCTGACAGAC+AGG | + | chr4_4:63223019-63223038 | None:intergenic | 60.0% | |
| AGCGCTTCTTGCACTCCCCA+AGG | - | chr4_4:63223355-63223374 | Msa0693970:five_prime_UTR | 60.0% | |
| CTAACAGGGCACAGGCAGCA+GGG | + | chr4_4:63223386-63223405 | None:intergenic | 60.0% | |
| TCTAACAGGGCACAGGCAGC+AGG | + | chr4_4:63223387-63223406 | None:intergenic | 60.0% | |
| GAGGTCACGGGCTCGCAAAC+AGG | - | chr4_4:63222243-63222262 | Msa0693970:intron | 65.0% | |
| AACGGCCCTGACAGACAGGC+TGG | + | chr4_4:63223015-63223034 | None:intergenic | 65.0% | |
| AGGCAGCAGGGCCGGACCTT+GGG | + | chr4_4:63223374-63223393 | None:intergenic | 70.0% | |
| GGCAGCAGGGCCGGACCTTG+GGG | + | chr4_4:63223373-63223392 | None:intergenic | 75.0% | |
| CAGGCAGCAGGGCCGGACCT+TGG | + | chr4_4:63223375-63223394 | None:intergenic | 75.0% | |
| CAGGGCACAGGCAGCAGGGC+CGG | + | chr4_4:63223382-63223401 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 63219476 | 63223519 | 63219476 | ID=Msa0693970;Name=Msa0693970 |
| chr4_4 | mRNA | 63219476 | 63223519 | 63219476 | ID=Msa0693970-mRNA-1;Parent=Msa0693970;Name=Msa0693970-mRNA-1;_AED=0.06;_eAED=0.06;_QI=301|1|1|1|0.4|0.16|6|379|375 |
| chr4_4 | exon | 63219476 | 63219605 | 63219476 | ID=Msa0693970-mRNA-1:exon:17748;Parent=Msa0693970-mRNA-1 |
| chr4_4 | exon | 63219977 | 63220318 | 63219977 | ID=Msa0693970-mRNA-1:exon:17747;Parent=Msa0693970-mRNA-1 |
| chr4_4 | exon | 63220418 | 63220489 | 63220418 | ID=Msa0693970-mRNA-1:exon:17746;Parent=Msa0693970-mRNA-1 |
| chr4_4 | exon | 63220731 | 63221821 | 63220731 | ID=Msa0693970-mRNA-1:exon:17745;Parent=Msa0693970-mRNA-1 |
| chr4_4 | exon | 63223327 | 63223440 | 63223327 | ID=Msa0693970-mRNA-1:exon:17744;Parent=Msa0693970-mRNA-1 |
| chr4_4 | exon | 63223461 | 63223519 | 63223461 | ID=Msa0693970-mRNA-1:exon:17743;Parent=Msa0693970-mRNA-1 |
| chr4_4 | five_prime_UTR | 63223461 | 63223519 | 63223461 | ID=Msa0693970-mRNA-1:five_prime_utr;Parent=Msa0693970-mRNA-1 |
| chr4_4 | five_prime_UTR | 63223327 | 63223440 | 63223327 | ID=Msa0693970-mRNA-1:five_prime_utr;Parent=Msa0693970-mRNA-1 |
| chr4_4 | five_prime_UTR | 63221694 | 63221821 | 63221694 | ID=Msa0693970-mRNA-1:five_prime_utr;Parent=Msa0693970-mRNA-1 |
| chr4_4 | CDS | 63220731 | 63221693 | 63220731 | ID=Msa0693970-mRNA-1:cds;Parent=Msa0693970-mRNA-1 |
| chr4_4 | CDS | 63220418 | 63220489 | 63220418 | ID=Msa0693970-mRNA-1:cds;Parent=Msa0693970-mRNA-1 |
| chr4_4 | CDS | 63220226 | 63220318 | 63220226 | ID=Msa0693970-mRNA-1:cds;Parent=Msa0693970-mRNA-1 |
| chr4_4 | three_prime_UTR | 63219977 | 63220225 | 63219977 | ID=Msa0693970-mRNA-1:three_prime_utr;Parent=Msa0693970-mRNA-1 |
| chr4_4 | three_prime_UTR | 63219476 | 63219605 | 63219476 | ID=Msa0693970-mRNA-1:three_prime_utr;Parent=Msa0693970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
