Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0917910 | XP_020209919.1 | 85.106 | 47 | 7 | 0 | 1 | 47 | 53 | 99 | 2.25e-16 | 84.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0917910 | sp|O49696|ALMTC_ARATH | 76.596 | 47 | 11 | 0 | 1 | 47 | 67 | 113 | 2.66e-17 | 78.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0610800 | Msa0917910 | 0.810534 | 1.098793e-50 | -8.615850e-47 |
| Msa0693970 | Msa0917910 | 0.818643 | 1.761616e-52 | -8.615850e-47 |
| Msa0240420 | Msa0917910 | 0.831069 | 2.057234e-55 | -8.615850e-47 |
| Msa0917910 | Msa1101660 | 0.802433 | 5.623144e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0917910 | MtrunA17_Chr1g0212251 | 82.979 | 47 | 8 | 0 | 1 | 47 | 65 | 111 | 4.64e-20 | 83.2 |
| Msa0917910 | MtrunA17_Chr1g0212201 | 82.979 | 47 | 8 | 0 | 1 | 47 | 69 | 115 | 4.21e-19 | 80.5 |
| Msa0917910 | MtrunA17_Chr3g0130651 | 85.106 | 47 | 6 | 1 | 38 | 84 | 44 | 89 | 1.11e-18 | 79.3 |
| Msa0917910 | MtrunA17_Chr1g0212291 | 97.872 | 47 | 1 | 0 | 1 | 47 | 66 | 112 | 2.38e-16 | 72.8 |
| Msa0917910 | MtrunA17_Chr8g0390931 | 61.224 | 49 | 19 | 0 | 2 | 50 | 89 | 137 | 4.01e-14 | 66.2 |
| Msa0917910 | MtrunA17_Chr4g0054741 | 75.676 | 37 | 9 | 0 | 1 | 37 | 77 | 113 | 1.27e-13 | 65.1 |
| Msa0917910 | MtrunA17_Chr4g0054761 | 75.000 | 36 | 9 | 0 | 2 | 37 | 78 | 113 | 8.96e-13 | 60.5 |
| Msa0917910 | MtrunA17_Chr3g0130671 | 70.732 | 41 | 10 | 1 | 49 | 89 | 67 | 105 | 3.49e-12 | 60.5 |
| Msa0917910 | MtrunA17_Chr6g0484691 | 55.357 | 56 | 23 | 1 | 5 | 58 | 116 | 171 | 3.91e-12 | 60.8 |
| Msa0917910 | MtrunA17_Chr4g0025591 | 48.529 | 68 | 30 | 1 | 2 | 64 | 70 | 137 | 7.40e-12 | 60.1 |
| Msa0917910 | MtrunA17_Chr3g0130641 | 75.000 | 36 | 9 | 0 | 50 | 85 | 62 | 97 | 9.36e-12 | 59.7 |
| Msa0917910 | MtrunA17_Chr8g0384661 | 65.000 | 40 | 14 | 0 | 49 | 88 | 78 | 117 | 1.02e-11 | 59.7 |
| Msa0917910 | MtrunA17_Chr3g0125091 | 62.500 | 40 | 15 | 0 | 49 | 88 | 62 | 101 | 1.04e-11 | 59.7 |
| Msa0917910 | MtrunA17_Chr1g0188871 | 50.909 | 55 | 26 | 1 | 1 | 55 | 74 | 127 | 2.62e-11 | 58.5 |
| Msa0917910 | MtrunA17_Chr7g0259731 | 45.679 | 81 | 33 | 3 | 1 | 70 | 84 | 164 | 2.98e-11 | 58.2 |
| Msa0917910 | MtrunA17_Chr1g0159761 | 60.000 | 40 | 16 | 0 | 49 | 88 | 55 | 94 | 3.91e-11 | 57.8 |
| Msa0917910 | MtrunA17_Chr2g0321971 | 61.702 | 47 | 18 | 0 | 1 | 47 | 65 | 111 | 5.16e-11 | 57.4 |
| Msa0917910 | MtrunA17_Chr1g0188881 | 52.727 | 55 | 25 | 1 | 1 | 55 | 80 | 133 | 5.46e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0917910 | AT4G17970.1 | 76.596 | 47 | 11 | 0 | 1 | 47 | 67 | 113 | 2.70e-18 | 78.6 |
| Msa0917910 | AT5G46610.1 | 55.000 | 80 | 25 | 2 | 1 | 69 | 69 | 148 | 7.55e-18 | 77.4 |
| Msa0917910 | AT5G46600.1 | 51.852 | 81 | 26 | 2 | 1 | 69 | 70 | 149 | 9.38e-17 | 74.3 |
| Msa0917910 | AT1G08440.1 | 55.738 | 61 | 25 | 1 | 2 | 60 | 42 | 102 | 2.23e-12 | 62.0 |
| Msa0917910 | AT4G00910.1 | 49.315 | 73 | 27 | 2 | 1 | 63 | 86 | 158 | 9.03e-12 | 60.1 |
| Msa0917910 | AT5G63850.1 | 55.000 | 40 | 18 | 0 | 49 | 88 | 46 | 85 | 1.16e-11 | 59.7 |
| Msa0917910 | AT5G49630.1 | 58.537 | 41 | 17 | 0 | 48 | 88 | 59 | 99 | 3.70e-11 | 58.2 |
| Msa0917910 | AT5G09220.1 | 57.500 | 40 | 17 | 0 | 49 | 88 | 73 | 112 | 5.12e-11 | 57.8 |
| Msa0917910 | AT1G77380.1 | 61.538 | 39 | 15 | 0 | 50 | 88 | 58 | 96 | 5.35e-11 | 57.8 |
Find 92 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGTCTGTGTGTTGGTTTC+TGG | 0.052494 | 6_2:-43634491 | Msa0917910:five_prime_UTR |
| TACAAGATGGATACTGATTT+TGG | 0.200181 | 6_2:-43632003 | Msa0917910:three_prime_UTR |
| CGTTGGAGTGTTTGGGGTCT+GGG | 0.240539 | 6_2:-43632152 | Msa0917910:three_prime_UTR |
| TGTTTCATTGTTGTATCTAA+TGG | 0.262149 | 6_2:-43634193 | Msa0917910:exon |
| CTACATGATGAAGGCTAGTT+TGG | 0.264669 | 6_2:+43634634 | None:intergenic |
| ACGTTGGAGTGTTTGGGGTC+TGG | 0.270257 | 6_2:-43632153 | Msa0917910:three_prime_UTR |
| GCTCAGTTGGGTTGGGTAAT+TGG | 0.278868 | 6_2:-43633861 | Msa0917910:CDS |
| ATTGCGCACGTTGGAGTGTT+TGG | 0.280819 | 6_2:-43632160 | Msa0917910:three_prime_UTR |
| TTGCGCACGTTGGAGTGTTT+GGG | 0.287467 | 6_2:-43632159 | Msa0917910:three_prime_UTR |
| TTGTAGAGACAAGTCCAATT+TGG | 0.299577 | 6_2:+43634763 | None:intergenic |
| GCCAGCAGCTACTGTGTTGC+AGG | 0.314017 | 6_2:-43632183 | Msa0917910:three_prime_UTR |
| AACTCTGTCAGCAGGATTAT+TGG | 0.318252 | 6_2:-43633889 | Msa0917910:CDS |
| GAAGCTGTTCACACAATTCT+AGG | 0.331709 | 6_2:-43633727 | Msa0917910:intron |
| GTTCAGTACACAAATCTTTA+CGG | 0.334346 | 6_2:-43633195 | Msa0917910:three_prime_UTR |
| TTAGCTGAATGTTATCGAAT+TGG | 0.348772 | 6_2:-43633786 | Msa0917910:CDS |
| CCTTCATCATGTAGATCCTT+TGG | 0.355248 | 6_2:-43634625 | Msa0917910:five_prime_UTR |
| AAAGGACTTAATAGAGGATT+AGG | 0.369561 | 6_2:-43633912 | Msa0917910:CDS |
| ATAGTTCCTCTTTCCGTAAG+AGG | 0.378359 | 6_2:+43633759 | None:intergenic |
| TGAAGGCTAGTTTGGATTTG+AGG | 0.382941 | 6_2:+43634642 | None:intergenic |
| TCTATTAAGTCCTTTGCATA+AGG | 0.384312 | 6_2:+43633920 | None:intergenic |
| TCTCTTGCTCCTGCATGATT+CGG | 0.386260 | 6_2:+43634466 | None:intergenic |
| AATCTTTACGGAACTGCAAT+AGG | 0.394383 | 6_2:-43633183 | Msa0917910:three_prime_UTR |
| CCAATCATTCATTCACGAAA+AGG | 0.404191 | 6_2:-43634431 | Msa0917910:five_prime_UTR |
| CGTTCTTCTTCCTCACGAAT+CGG | 0.410511 | 6_2:+43634374 | None:intergenic |
| TTACCTCTTTCGATTATGTT+CGG | 0.423522 | 6_2:+43634322 | None:intergenic |
| AAAGAGACTAGATCTAGGTT+TGG | 0.424811 | 6_2:+43634240 | None:intergenic |
| GATCTAGTCTCTTTGAAAGT+TGG | 0.427384 | 6_2:-43634231 | Msa0917910:five_prime_UTR |
| GCAATAGGATACACAATTGC+GGG | 0.428317 | 6_2:-43633168 | Msa0917910:three_prime_UTR |
| AAAGAGGAACTATACTTTCA+TGG | 0.430550 | 6_2:-43633749 | Msa0917910:CDS |
| CTGACGGAGAGAAGTTGATC+TGG | 0.430791 | 6_2:+43634538 | None:intergenic |
| CTTTCAAAGAGACTAGATCT+AGG | 0.432292 | 6_2:+43634235 | None:intergenic |
| TCTGTTTGAGTTGCTGCTGT+TGG | 0.441973 | 6_2:-43632237 | Msa0917910:three_prime_UTR |
| TCCTTTGGCTGGTGGTGCGA+TGG | 0.445597 | 6_2:-43634610 | Msa0917910:five_prime_UTR |
| GGGGTCTGGGTTTGATGCTG+TGG | 0.446369 | 6_2:-43632139 | Msa0917910:three_prime_UTR |
| TGGGGTTGTTTGTAGAGAGA+AGG | 0.452266 | 6_2:+43634688 | None:intergenic |
| TAATGGAACCATTGTACAAA+GGG | 0.453257 | 6_2:-43634176 | Msa0917910:CDS |
| TGCAGGAGCAAGAGAGGAAG+TGG | 0.456569 | 6_2:-43634458 | Msa0917910:five_prime_UTR |
| GATCACTCACATCATGCTAA+TGG | 0.460901 | 6_2:+43633143 | None:intergenic |
| TCGAATTGGTGATCCTCTTA+CGG | 0.464034 | 6_2:-43633772 | Msa0917910:CDS |
| GGTTTCAATGACACCCTTTG+TGG | 0.466023 | 6_2:-43633222 | Msa0917910:three_prime_UTR |
| TGGTCATAGCTCAGTTGGGT+TGG | 0.470560 | 6_2:-43633869 | Msa0917910:CDS |
| TGCTGTGGTGTGGTATGCGT+AGG | 0.480584 | 6_2:-43632124 | Msa0917910:three_prime_UTR |
| TTATGCAAAGGACTTAATAG+AGG | 0.486073 | 6_2:-43633918 | Msa0917910:CDS |
| GGTTGTTTGTAGAGAGAAGG+AGG | 0.486645 | 6_2:+43634691 | None:intergenic |
| CATCATGTAGATCCTTTGGC+TGG | 0.487300 | 6_2:-43634621 | Msa0917910:five_prime_UTR |
| GGTCATAGCTCAGTTGGGTT+GGG | 0.489156 | 6_2:-43633868 | Msa0917910:CDS |
| AACAACACAAACGTTCAAAT+CGG | 0.490303 | 6_2:-43634408 | Msa0917910:five_prime_UTR |
| TTTCCTATCCCTTTGTACAA+TGG | 0.496607 | 6_2:+43634168 | None:intergenic |
| AACGAGGGGCGCTGGTGGTG+CGG | 0.501184 | 6_2:+43634579 | None:intergenic |
| TCCTGCAACACAGTAGCTGC+TGG | 0.501995 | 6_2:+43632182 | None:intergenic |
| CCTTTGGCTGGTGGTGCGAT+GGG | 0.513598 | 6_2:-43634609 | Msa0917910:five_prime_UTR |
| CATGACTGTGGTTGTCGTCA+TGG | 0.515653 | 6_2:-43634127 | Msa0917910:CDS |
| TGCGCACGTTGGAGTGTTTG+GGG | 0.516069 | 6_2:-43632158 | Msa0917910:three_prime_UTR |
| ATTATTGGTCATAGCTCAGT+TGG | 0.517309 | 6_2:-43633874 | Msa0917910:CDS |
| GCTGTGGTGTGGTATGCGTA+GGG | 0.524060 | 6_2:-43632123 | Msa0917910:three_prime_UTR |
| GGATTAGGAACTCTGTCAGC+AGG | 0.527709 | 6_2:-43633897 | Msa0917910:CDS |
| AGGCTAGTTTGGATTTGAGG+AGG | 0.528786 | 6_2:+43634645 | None:intergenic |
| GGTGATCCTCTTACGGAAAG+AGG | 0.530451 | 6_2:-43633765 | Msa0917910:CDS |
| ACGAGAAGAACGAGGGGCGC+TGG | 0.530692 | 6_2:+43634571 | None:intergenic |
| GTTTCAATGACACCCTTTGT+GGG | 0.537172 | 6_2:-43633221 | Msa0917910:three_prime_UTR |
| GTTGTAGATGCAATACAAGA+TGG | 0.538406 | 6_2:-43632016 | Msa0917910:three_prime_UTR |
| TTATTGGTCATAGCTCAGTT+GGG | 0.538920 | 6_2:-43633873 | Msa0917910:CDS |
| GAACCATTGTACAAAGGGAT+AGG | 0.540699 | 6_2:-43634171 | Msa0917910:CDS |
| AAACCGAACATAATCGAAAG+AGG | 0.548291 | 6_2:-43634325 | Msa0917910:five_prime_UTR |
| CCAAAGGATCTACATGATGA+AGG | 0.552314 | 6_2:+43634625 | None:intergenic |
| AGAGAAGTTGATCTGGAAGA+AGG | 0.561043 | 6_2:+43634545 | None:intergenic |
| TAATCGAAAGAGGTAAATAG+AGG | 0.562774 | 6_2:-43634315 | Msa0917910:five_prime_UTR |
| CTTCTTCCTCACGAATCGGT+CGG | 0.564207 | 6_2:+43634378 | None:intergenic |
| TTTCTGGAACCGAATCATGC+AGG | 0.566089 | 6_2:-43634475 | Msa0917910:five_prime_UTR |
| GTACTGAACTATCCCACAAA+GGG | 0.571823 | 6_2:+43633209 | None:intergenic |
| TTCGTCGGCTGTCTGTGTGT+TGG | 0.575191 | 6_2:-43634498 | Msa0917910:five_prime_UTR |
| CTGGGTTTGATGCTGTGGTG+TGG | 0.576682 | 6_2:-43632134 | Msa0917910:three_prime_UTR |
| TAAAAGTGATGAAGTATACC+AGG | 0.582277 | 6_2:+43633806 | None:intergenic |
| GAATCATGCAGGAGCAAGAG+AGG | 0.585671 | 6_2:-43634464 | Msa0917910:five_prime_UTR |
| CTCAACGAACCAAACACACC+CGG | 0.588644 | 6_2:+43632072 | None:intergenic |
| CTGAAGAAAATCATAACAGA+AGG | 0.590235 | 6_2:+43633837 | None:intergenic |
| GAAGGACGACGAGAAGAACG+AGG | 0.591402 | 6_2:+43634563 | None:intergenic |
| AGAAGAACGAGGGGCGCTGG+TGG | 0.591627 | 6_2:+43634574 | None:intergenic |
| CATGTAGATCCTTTGGCTGG+TGG | 0.594338 | 6_2:-43634618 | Msa0917910:five_prime_UTR |
| CTGTGGTGTGGTATGCGTAG+GGG | 0.597558 | 6_2:-43632122 | Msa0917910:three_prime_UTR |
| TGTGGTGTGGTATGCGTAGG+GGG | 0.602425 | 6_2:-43632121 | Msa0917910:three_prime_UTR |
| CTAATGGAACCATTGTACAA+AGG | 0.603339 | 6_2:-43634177 | Msa0917910:CDS |
| TGCAATAGGATACACAATTG+CGG | 0.626230 | 6_2:-43633169 | Msa0917910:three_prime_UTR |
| GCAGGAGGAACCTTATGCAA+AGG | 0.631495 | 6_2:-43633930 | Msa0917910:intron |
| AAGGACGACGAGAAGAACGA+GGG | 0.636567 | 6_2:+43634564 | None:intergenic |
| CCCATCGCACCACCAGCCAA+AGG | 0.639211 | 6_2:+43634609 | None:intergenic |
| CGATTCGTGAGGAAGAAGAA+CGG | 0.665989 | 6_2:-43634373 | Msa0917910:five_prime_UTR |
| AGGACGACGAGAAGAACGAG+GGG | 0.668151 | 6_2:+43634565 | None:intergenic |
| TGTTGTGGCTGTCATGACTG+TGG | 0.668854 | 6_2:-43634139 | Msa0917910:CDS |
| TGTACTGAACTATCCCACAA+AGG | 0.675008 | 6_2:+43633208 | None:intergenic |
| GTAGATCCGACCGATTCGTG+AGG | 0.681690 | 6_2:-43634384 | Msa0917910:five_prime_UTR |
| TGTTGCAGGATTGCGCACGT+TGG | 0.703707 | 6_2:-43632169 | Msa0917910:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATCAATATCAATTTTTTT+GGG | + | chr6_2:43633692-43633711 | None:intergenic | 10.0% |
| !!! | AAAATCAATATCAATTTTTT+TGG | + | chr6_2:43633693-43633712 | None:intergenic | 10.0% |
| !! | AATAGTATACTATTAAATTA+TGG | - | chr6_2:43634332-43634351 | Msa0917910:five_prime_UTR | 10.0% |
| !!! | TCAAGTAATATTTTAGAAAG+AGG | + | chr6_2:43631998-43632017 | None:intergenic | 20.0% |
| !! | ATAATCGAAACAAATCAAAT+TGG | - | chr6_2:43633074-43633093 | Msa0917910:intron | 20.0% |
| !!! | GCTTTTTATTTAGATTTTTG+AGG | + | chr6_2:43633723-43633742 | None:intergenic | 20.0% |
| !! | TTTAATCACTGATATAATAG+TGG | + | chr6_2:43633912-43633931 | None:intergenic | 20.0% |
| !! | TATAATAACTAGAGATATAG+TGG | + | chr6_2:43633950-43633969 | None:intergenic | 20.0% |
| !!! | AGAACGATTATTTTAGAAAG+AGG | + | chr6_2:43632023-43632042 | None:intergenic | 25.0% |
| ! | GAAAAAAAAGTTTGAACAGA+AGG | + | chr6_2:43632468-43632487 | None:intergenic | 25.0% |
| ! | TGTTTCATTGTTGTATCTAA+TGG | - | chr6_2:43632541-43632560 | Msa0917910:intron | 25.0% |
| ! | TAGGTATTAAATATGATTGC+AGG | - | chr6_2:43632786-43632805 | Msa0917910:intron | 25.0% |
| !!! | GTTTGTTGTTTCTTTTGAAA+AGG | - | chr6_2:43633263-43633282 | Msa0917910:intron | 25.0% |
| !!! | TGATTTGGTTATATACTTCT+TGG | - | chr6_2:43633363-43633382 | Msa0917910:intron | 25.0% |
| ! | GTTATGTTATTGATATCACA+TGG | - | chr6_2:43634066-43634085 | Msa0917910:intron | 25.0% |
| !! | TTTGCAATGATCACTATTTT+AGG | + | chr6_2:43634102-43634121 | None:intergenic | 25.0% |
| ! | TATTAATAAGTAGACTGATC+AGG | - | chr6_2:43634126-43634145 | Msa0917910:CDS | 25.0% |
| ! | AAAGTATATGTGATCCAAAT+GGG | + | chr6_2:43634184-43634203 | None:intergenic | 25.0% |
| ! | TCAAGTAATGATTGTCTAAT+AGG | + | chr6_2:43634238-43634257 | None:intergenic | 25.0% |
| AACAACACAAACGTTCAAAT+CGG | - | chr6_2:43632326-43632345 | Msa0917910:intron | 30.0% | |
| TTACCTCTTTCGATTATGTT+CGG | + | chr6_2:43632415-43632434 | None:intergenic | 30.0% | |
| TAATCGAAAGAGGTAAATAG+AGG | - | chr6_2:43632419-43632438 | Msa0917910:intron | 30.0% | |
| TAATGGAACCATTGTACAAA+GGG | - | chr6_2:43632558-43632577 | Msa0917910:intron | 30.0% | |
| TGTTAAGATTACAGTCTCAT+AGG | - | chr6_2:43632767-43632786 | Msa0917910:intron | 30.0% | |
| GTATTAAATATGATTGCAGG+AGG | - | chr6_2:43632789-43632808 | Msa0917910:intron | 30.0% | |
| TCTATTAAGTCCTTTGCATA+AGG | + | chr6_2:43632817-43632836 | None:intergenic | 30.0% | |
| TTATGCAAAGGACTTAATAG+AGG | - | chr6_2:43632816-43632835 | Msa0917910:intron | 30.0% | |
| AAAGGACTTAATAGAGGATT+AGG | - | chr6_2:43632822-43632841 | Msa0917910:intron | 30.0% | |
| CTGAAGAAAATCATAACAGA+AGG | + | chr6_2:43632900-43632919 | None:intergenic | 30.0% | |
| TAAAAGTGATGAAGTATACC+AGG | + | chr6_2:43632931-43632950 | None:intergenic | 30.0% | |
| TTAGCTGAATGTTATCGAAT+TGG | - | chr6_2:43632948-43632967 | Msa0917910:intron | 30.0% | |
| AAAGAGGAACTATACTTTCA+TGG | - | chr6_2:43632985-43633004 | Msa0917910:intron | 30.0% | |
| AACTGTGAAGTAAGTGTTTA+TGG | - | chr6_2:43633113-43633132 | Msa0917910:intron | 30.0% | |
| CTAGTTTAAACTGCTCAAAA+GGG | + | chr6_2:43633174-43633193 | None:intergenic | 30.0% | |
| !!! | TGACTTTGTTTTTGTCTACT+TGG | + | chr6_2:43633331-43633350 | None:intergenic | 30.0% |
| ! | GAGAATCAAATGATTTTTGC+AGG | - | chr6_2:43633488-43633507 | Msa0917910:intron | 30.0% |
| ! | AATCAAATGATTTTTGCAGG+AGG | - | chr6_2:43633491-43633510 | Msa0917910:intron | 30.0% |
| GTTCAGTACACAAATCTTTA+CGG | - | chr6_2:43633539-43633558 | Msa0917910:intron | 30.0% | |
| CAATAACATAACAGATTGAC+AGG | + | chr6_2:43634058-43634077 | None:intergenic | 30.0% | |
| TAGTTATAAGTTAGCCCATT+TGG | - | chr6_2:43634167-43634186 | Msa0917910:CDS | 30.0% | |
| ! | GAAAGTATATGTGATCCAAA+TGG | + | chr6_2:43634185-43634204 | None:intergenic | 30.0% |
| CATTACTTGAGAAATAGTTG+TGG | - | chr6_2:43634248-43634267 | Msa0917910:five_prime_UTR | 30.0% | |
| GCATTTGTTTAACAACAGAT+TGG | + | chr6_2:43634299-43634318 | None:intergenic | 30.0% | |
| !!! | TACAAGATGGATACTGATTT+TGG | - | chr6_2:43634731-43634750 | Msa0917910:five_prime_UTR | 30.0% |
| !! | AGAAAAAGTGATGTCGGTTT+GGG | + | chr6_2:43632068-43632087 | None:intergenic | 35.0% |
| ! | AAGAAAAAGTGATGTCGGTT+TGG | + | chr6_2:43632069-43632088 | None:intergenic | 35.0% |
| ! | CCTTTTCGTGAATGAATGAT+TGG | + | chr6_2:43632306-43632325 | None:intergenic | 35.0% |
| CCAATCATTCATTCACGAAA+AGG | - | chr6_2:43632303-43632322 | Msa0917910:intron | 35.0% | |
| AAACCGAACATAATCGAAAG+AGG | - | chr6_2:43632409-43632428 | Msa0917910:intron | 35.0% | |
| AAAGAGACTAGATCTAGGTT+TGG | + | chr6_2:43632497-43632516 | None:intergenic | 35.0% | |
| CTTTCAAAGAGACTAGATCT+AGG | + | chr6_2:43632502-43632521 | None:intergenic | 35.0% | |
| ! | GATCTAGTCTCTTTGAAAGT+TGG | - | chr6_2:43632503-43632522 | Msa0917910:intron | 35.0% |
| CTAATGGAACCATTGTACAA+AGG | - | chr6_2:43632557-43632576 | Msa0917910:intron | 35.0% | |
| TTTCCTATCCCTTTGTACAA+TGG | + | chr6_2:43632569-43632588 | None:intergenic | 35.0% | |
| GATAGGAAAAAATGCTGTTG+TGG | - | chr6_2:43632580-43632599 | Msa0917910:intron | 35.0% | |
| ! | TCATGGATTTTACAGTAGGT+AGG | - | chr6_2:43632624-43632643 | Msa0917910:intron | 35.0% |
| ATTATTGGTCATAGCTCAGT+TGG | - | chr6_2:43632860-43632879 | Msa0917910:intron | 35.0% | |
| TTATTGGTCATAGCTCAGTT+GGG | - | chr6_2:43632861-43632880 | Msa0917910:intron | 35.0% | |
| ! | GCTAGTTTAAACTGCTCAAA+AGG | + | chr6_2:43633175-43633194 | None:intergenic | 35.0% |
| AATCTTTACGGAACTGCAAT+AGG | - | chr6_2:43633551-43633570 | Msa0917910:intron | 35.0% | |
| TGCAATAGGATACACAATTG+CGG | - | chr6_2:43633565-43633584 | Msa0917910:intron | 35.0% | |
| TGCTTCTGTAGCTTTCTATA+AGG | - | chr6_2:43634004-43634023 | Msa0917910:intron | 35.0% | |
| !!! | TATTGTCCGGTTGTTTTTTC+CGG | - | chr6_2:43634643-43634662 | Msa0917910:five_prime_UTR | 35.0% |
| GTTGTAGATGCAATACAAGA+TGG | - | chr6_2:43634718-43634737 | Msa0917910:five_prime_UTR | 35.0% | |
| !! | GAAAAAGTGATGTCGGTTTG+GGG | + | chr6_2:43632067-43632086 | None:intergenic | 40.0% |
| GGAGGAAGAAAAAGTGATGT+CGG | + | chr6_2:43632074-43632093 | None:intergenic | 40.0% | |
| !! | TGAAGGCTAGTTTGGATTTG+AGG | + | chr6_2:43632095-43632114 | None:intergenic | 40.0% |
| ! | CTACATGATGAAGGCTAGTT+TGG | + | chr6_2:43632103-43632122 | None:intergenic | 40.0% |
| CCAAAGGATCTACATGATGA+AGG | + | chr6_2:43632112-43632131 | None:intergenic | 40.0% | |
| CCTTCATCATGTAGATCCTT+TGG | - | chr6_2:43632109-43632128 | Msa0917910:three_prime_UTR | 40.0% | |
| ! | AGAGAAGTTGATCTGGAAGA+AGG | + | chr6_2:43632192-43632211 | None:intergenic | 40.0% |
| CCGCAAAAACTCAAATCTGA+CGG | + | chr6_2:43632215-43632234 | None:intergenic | 40.0% | |
| !! | CCGTCAGATTTGAGTTTTTG+CGG | - | chr6_2:43632212-43632231 | Msa0917910:three_prime_UTR | 40.0% |
| ! | TTGAGTTTTTGCGGTTTCGT+CGG | - | chr6_2:43632221-43632240 | Msa0917910:three_prime_UTR | 40.0% |
| GAACCATTGTACAAAGGGAT+AGG | - | chr6_2:43632563-43632582 | Msa0917910:intron | 40.0% | |
| ! | GTCGTCATGGATTTTACAGT+AGG | - | chr6_2:43632620-43632639 | Msa0917910:intron | 40.0% |
| AACTCTGTCAGCAGGATTAT+TGG | - | chr6_2:43632845-43632864 | Msa0917910:intron | 40.0% | |
| ! | TTTTCTTCAGTCTCATCACC+TGG | - | chr6_2:43632910-43632929 | Msa0917910:intron | 40.0% |
| ! | TCGAATTGGTGATCCTCTTA+CGG | - | chr6_2:43632962-43632981 | Msa0917910:intron | 40.0% |
| ATAGTTCCTCTTTCCGTAAG+AGG | + | chr6_2:43632978-43632997 | None:intergenic | 40.0% | |
| GAAGCTGTTCACACAATTCT+AGG | - | chr6_2:43633007-43633026 | Msa0917910:intron | 40.0% | |
| TCACACGTTTGCACTTGATT+TGG | - | chr6_2:43633348-43633367 | Msa0917910:intron | 40.0% | |
| GTTTCAATGACACCCTTTGT+GGG | - | chr6_2:43633513-43633532 | Msa0917910:intron | 40.0% | |
| GTACTGAACTATCCCACAAA+GGG | + | chr6_2:43633528-43633547 | None:intergenic | 40.0% | |
| TGTACTGAACTATCCCACAA+AGG | + | chr6_2:43633529-43633548 | None:intergenic | 40.0% | |
| GCAATAGGATACACAATTGC+GGG | - | chr6_2:43633566-43633585 | Msa0917910:intron | 40.0% | |
| GATCACTCACATCATGCTAA+TGG | + | chr6_2:43633594-43633613 | None:intergenic | 40.0% | |
| AACAGATTGACAGGTAACCT+TGG | + | chr6_2:43634049-43634068 | None:intergenic | 40.0% | |
| TTCTGTTTCAGTCTGTTGTG+TGG | - | chr6_2:43634443-43634462 | Msa0917910:five_prime_UTR | 40.0% | |
| !!! | CAGTCTGTTGTGTGGTTTTT+TGG | - | chr6_2:43634451-43634470 | Msa0917910:five_prime_UTR | 40.0% |
| !!! | GGTTTTTTGGTGTTGATAGC+AGG | - | chr6_2:43634464-43634483 | Msa0917910:five_prime_UTR | 40.0% |
| GGAAAAAACAACCGGACAAT+AGG | + | chr6_2:43634644-43634663 | None:intergenic | 40.0% | |
| !!! | ATTGTCCGGTTGTTTTTTCC+GGG | - | chr6_2:43634644-43634663 | Msa0917910:five_prime_UTR | 40.0% |
| !!! | TTGTTTTTTCCGGGTGTGTT+TGG | - | chr6_2:43634653-43634672 | Msa0917910:five_prime_UTR | 40.0% |
| GGTTGTTTGTAGAGAGAAGG+AGG | + | chr6_2:43632046-43632065 | None:intergenic | 45.0% | |
| TGGGGTTGTTTGTAGAGAGA+AGG | + | chr6_2:43632049-43632068 | None:intergenic | 45.0% | |
| !! | AGGCTAGTTTGGATTTGAGG+AGG | + | chr6_2:43632092-43632111 | None:intergenic | 45.0% |
| CATCATGTAGATCCTTTGGC+TGG | - | chr6_2:43632113-43632132 | Msa0917910:three_prime_UTR | 45.0% | |
| !! | TTTCTGGAACCGAATCATGC+AGG | - | chr6_2:43632259-43632278 | Msa0917910:intron | 45.0% |
| TCTCTTGCTCCTGCATGATT+CGG | + | chr6_2:43632271-43632290 | None:intergenic | 45.0% | |
| CGTTCTTCTTCCTCACGAAT+CGG | + | chr6_2:43632363-43632382 | None:intergenic | 45.0% | |
| CGATTCGTGAGGAAGAAGAA+CGG | - | chr6_2:43632361-43632380 | Msa0917910:intron | 45.0% | |
| GGTTTCAATGACACCCTTTG+TGG | - | chr6_2:43633512-43633531 | Msa0917910:intron | 45.0% | |
| CATCTCATCATTGAGCTCCA+AGG | - | chr6_2:43634029-43634048 | Msa0917910:intron | 45.0% | |
| AAGTAGACTGATCAGGCGTA+TGG | - | chr6_2:43634133-43634152 | Msa0917910:CDS | 45.0% | |
| !! | TCTGTTTGAGTTGCTGCTGT+TGG | - | chr6_2:43634497-43634516 | Msa0917910:five_prime_UTR | 45.0% |
| ACACACCCGGAAAAAACAAC+CGG | + | chr6_2:43634652-43634671 | None:intergenic | 45.0% | |
| !!! | TTTTTTAGTTTTTTTTTTTT+AGG | - | chr6_2:43633616-43633635 | Msa0917910:intron | 5.0% |
| CATGTAGATCCTTTGGCTGG+TGG | - | chr6_2:43632116-43632135 | Msa0917910:three_prime_UTR | 50.0% | |
| AAGGACGACGAGAAGAACGA+GGG | + | chr6_2:43632173-43632192 | None:intergenic | 50.0% | |
| ! | CTGACGGAGAGAAGTTGATC+TGG | + | chr6_2:43632199-43632218 | None:intergenic | 50.0% |
| !! | GCTGTCTGTGTGTTGGTTTC+TGG | - | chr6_2:43632243-43632262 | Msa0917910:three_prime_UTR | 50.0% |
| GAATCATGCAGGAGCAAGAG+AGG | - | chr6_2:43632270-43632289 | Msa0917910:intron | 50.0% | |
| CTTCTTCCTCACGAATCGGT+CGG | + | chr6_2:43632359-43632378 | None:intergenic | 50.0% | |
| TGTTGTGGCTGTCATGACTG+TGG | - | chr6_2:43632595-43632614 | Msa0917910:intron | 50.0% | |
| CATGACTGTGGTTGTCGTCA+TGG | - | chr6_2:43632607-43632626 | Msa0917910:intron | 50.0% | |
| GCAGGAGGAACCTTATGCAA+AGG | - | chr6_2:43632804-43632823 | Msa0917910:intron | 50.0% | |
| GGATTAGGAACTCTGTCAGC+AGG | - | chr6_2:43632837-43632856 | Msa0917910:intron | 50.0% | |
| TGGTCATAGCTCAGTTGGGT+TGG | - | chr6_2:43632865-43632884 | Msa0917910:intron | 50.0% | |
| GGTCATAGCTCAGTTGGGTT+GGG | - | chr6_2:43632866-43632885 | Msa0917910:intron | 50.0% | |
| !! | GCTCAGTTGGGTTGGGTAAT+TGG | - | chr6_2:43632873-43632892 | Msa0917910:intron | 50.0% |
| GGTGATCCTCTTACGGAAAG+AGG | - | chr6_2:43632969-43632988 | Msa0917910:intron | 50.0% | |
| ! | ATTGCGCACGTTGGAGTGTT+TGG | - | chr6_2:43634574-43634593 | Msa0917910:five_prime_UTR | 50.0% |
| ! | TTGCGCACGTTGGAGTGTTT+GGG | - | chr6_2:43634575-43634594 | Msa0917910:five_prime_UTR | 50.0% |
| AGGGGGTCATTCCTATTGTC+CGG | - | chr6_2:43634630-43634649 | Msa0917910:five_prime_UTR | 50.0% | |
| CTCAACGAACCAAACACACC+CGG | + | chr6_2:43634665-43634684 | None:intergenic | 50.0% | |
| AGGACGACGAGAAGAACGAG+GGG | + | chr6_2:43632172-43632191 | None:intergenic | 55.0% | |
| GAAGGACGACGAGAAGAACG+AGG | + | chr6_2:43632174-43632193 | None:intergenic | 55.0% | |
| ! | TTCGTCGGCTGTCTGTGTGT+TGG | - | chr6_2:43632236-43632255 | Msa0917910:three_prime_UTR | 55.0% |
| TGCAGGAGCAAGAGAGGAAG+TGG | - | chr6_2:43632276-43632295 | Msa0917910:intron | 55.0% | |
| !! | GTAGATCCGACCGATTCGTG+AGG | - | chr6_2:43632350-43632369 | Msa0917910:intron | 55.0% |
| TCCTGCAACACAGTAGCTGC+TGG | + | chr6_2:43634555-43634574 | None:intergenic | 55.0% | |
| TGTTGCAGGATTGCGCACGT+TGG | - | chr6_2:43634565-43634584 | Msa0917910:five_prime_UTR | 55.0% | |
| ! | TGCGCACGTTGGAGTGTTTG+GGG | - | chr6_2:43634576-43634595 | Msa0917910:five_prime_UTR | 55.0% |
| ! | ACGTTGGAGTGTTTGGGGTC+TGG | - | chr6_2:43634581-43634600 | Msa0917910:five_prime_UTR | 55.0% |
| ! | CGTTGGAGTGTTTGGGGTCT+GGG | - | chr6_2:43634582-43634601 | Msa0917910:five_prime_UTR | 55.0% |
| CTGGGTTTGATGCTGTGGTG+TGG | - | chr6_2:43634600-43634619 | Msa0917910:five_prime_UTR | 55.0% | |
| TGCTGTGGTGTGGTATGCGT+AGG | - | chr6_2:43634610-43634629 | Msa0917910:five_prime_UTR | 55.0% | |
| GCTGTGGTGTGGTATGCGTA+GGG | - | chr6_2:43634611-43634630 | Msa0917910:five_prime_UTR | 55.0% | |
| CTGTGGTGTGGTATGCGTAG+GGG | - | chr6_2:43634612-43634631 | Msa0917910:five_prime_UTR | 55.0% | |
| TGTGGTGTGGTATGCGTAGG+GGG | - | chr6_2:43634613-43634632 | Msa0917910:five_prime_UTR | 55.0% | |
| ! | TCCTTTGGCTGGTGGTGCGA+TGG | - | chr6_2:43632124-43632143 | Msa0917910:three_prime_UTR | 60.0% |
| ! | CCTTTGGCTGGTGGTGCGAT+GGG | - | chr6_2:43632125-43632144 | Msa0917910:three_prime_UTR | 60.0% |
| GCCAGCAGCTACTGTGTTGC+AGG | - | chr6_2:43634551-43634570 | Msa0917910:five_prime_UTR | 60.0% | |
| GGGGTCTGGGTTTGATGCTG+TGG | - | chr6_2:43634595-43634614 | Msa0917910:five_prime_UTR | 60.0% | |
| CCCATCGCACCACCAGCCAA+AGG | + | chr6_2:43632128-43632147 | None:intergenic | 65.0% | |
| !! | AGAAGAACGAGGGGCGCTGG+TGG | + | chr6_2:43632163-43632182 | None:intergenic | 65.0% |
| ! | ACGAGAAGAACGAGGGGCGC+TGG | + | chr6_2:43632166-43632185 | None:intergenic | 65.0% |
| !! | AACGAGGGGCGCTGGTGGTG+CGG | + | chr6_2:43632158-43632177 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 43631974 | 43634782 | 43631974 | ID=Msa0917910;Name=Msa0917910 |
| chr6_2 | mRNA | 43631974 | 43634782 | 43631974 | ID=Msa0917910-mRNA-1;Parent=Msa0917910;Name=Msa0917910-mRNA-1;_AED=0.04;_eAED=0.04;_QI=586|1|1|1|0.33|0.5|4|394|100 |
| chr6_2 | exon | 43631974 | 43632273 | 43631974 | ID=Msa0917910-mRNA-1:exon:6953;Parent=Msa0917910-mRNA-1 |
| chr6_2 | exon | 43633153 | 43633246 | 43633153 | ID=Msa0917910-mRNA-1:exon:6952;Parent=Msa0917910-mRNA-1 |
| chr6_2 | exon | 43633728 | 43633948 | 43633728 | ID=Msa0917910-mRNA-1:exon:6951;Parent=Msa0917910-mRNA-1 |
| chr6_2 | exon | 43634115 | 43634782 | 43634115 | ID=Msa0917910-mRNA-1:exon:6950;Parent=Msa0917910-mRNA-1 |
| chr6_2 | five_prime_UTR | 43634197 | 43634782 | 43634197 | ID=Msa0917910-mRNA-1:five_prime_utr;Parent=Msa0917910-mRNA-1 |
| chr6_2 | CDS | 43634115 | 43634196 | 43634115 | ID=Msa0917910-mRNA-1:cds;Parent=Msa0917910-mRNA-1 |
| chr6_2 | CDS | 43633728 | 43633948 | 43633728 | ID=Msa0917910-mRNA-1:cds;Parent=Msa0917910-mRNA-1 |
| chr6_2 | three_prime_UTR | 43633153 | 43633246 | 43633153 | ID=Msa0917910-mRNA-1:three_prime_utr;Parent=Msa0917910-mRNA-1 |
| chr6_2 | three_prime_UTR | 43631974 | 43632273 | 43631974 | ID=Msa0917910-mRNA-1:three_prime_utr;Parent=Msa0917910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
