Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1269940 | sp|P49044|VPE_VICSA | 68.750 | 144 | 12 | 1 | 101 | 211 | 67 | 210 | 8.41e-60 | 199 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1269940 | I3SXA5 | 71.528 | 144 | 8 | 1 | 101 | 211 | 69 | 212 | 1.57e-60 | 203 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006390 | Msa1269940 | 0.804117 | 2.519806e-49 | -8.615850e-47 |
| Msa0009420 | Msa1269940 | 0.802296 | 5.999872e-49 | -8.615850e-47 |
| Msa0021210 | Msa1269940 | 0.810177 | 1.312154e-50 | -8.615850e-47 |
| Msa0050380 | Msa1269940 | 0.822355 | 2.476705e-53 | -8.615850e-47 |
| Msa0078750 | Msa1269940 | 0.800253 | 1.572063e-48 | -8.615850e-47 |
| Msa0114430 | Msa1269940 | 0.823077 | 1.682046e-53 | -8.615850e-47 |
| Msa0607540 | Msa1269940 | 0.823868 | 1.098808e-53 | -8.615850e-47 |
| Msa0626820 | Msa1269940 | 0.813162 | 2.942381e-51 | -8.615850e-47 |
| Msa0647830 | Msa1269940 | 0.803604 | 3.220628e-49 | -8.615850e-47 |
| Msa0669410 | Msa1269940 | 0.837964 | 3.808284e-57 | -8.615850e-47 |
| Msa0672690 | Msa1269940 | 0.805756 | 1.144767e-49 | -8.615850e-47 |
| Msa0688480 | Msa1269940 | 0.801089 | 1.061559e-48 | -8.615850e-47 |
| Msa0693970 | Msa1269940 | 0.813921 | 2.003358e-51 | -8.615850e-47 |
| Msa0745260 | Msa1269940 | -0.808869 | 2.505620e-50 | -8.615850e-47 |
| Msa0766630 | Msa1269940 | 0.804061 | 2.588557e-49 | -8.615850e-47 |
| Msa0773840 | Msa1269940 | 0.807611 | 4.645120e-50 | -8.615850e-47 |
| Msa0773850 | Msa1269940 | 0.804795 | 1.819594e-49 | -8.615850e-47 |
| Msa0800210 | Msa1269940 | 0.833533 | 5.048680e-56 | -8.615850e-47 |
| Msa0801780 | Msa1269940 | 0.808827 | 2.557662e-50 | -8.615850e-47 |
| Msa0807030 | Msa1269940 | 0.809748 | 1.623279e-50 | -8.615850e-47 |
| Msa0820850 | Msa1269940 | 0.812433 | 4.250602e-51 | -8.615850e-47 |
| Msa0131770 | Msa1269940 | 0.800846 | 1.190123e-48 | -8.615850e-47 |
| Msa0153830 | Msa1269940 | 0.803594 | 3.236321e-49 | -8.615850e-47 |
| Msa0202720 | Msa1269940 | 0.806322 | 8.703479e-50 | -8.615850e-47 |
| Msa0220740 | Msa1269940 | 0.813278 | 2.775969e-51 | -8.615850e-47 |
| Msa0223010 | Msa1269940 | 0.826001 | 3.446896e-54 | -8.615850e-47 |
| Msa0233300 | Msa1269940 | 0.805218 | 1.484104e-49 | -8.615850e-47 |
| Msa1233890 | Msa1269940 | 0.823890 | 1.085722e-53 | -8.615850e-47 |
| Msa1239530 | Msa1269940 | 0.804949 | 1.689698e-49 | -8.615850e-47 |
| Msa1249490 | Msa1269940 | 0.826364 | 2.825178e-54 | -8.615850e-47 |
| Msa1269920 | Msa1269940 | 0.949467 | 1.199287e-107 | -8.615850e-47 |
| Msa1269940 | Msa1284680 | 0.803065 | 4.163838e-49 | -8.615850e-47 |
| Msa1269940 | Msa1310700 | 0.822948 | 1.802478e-53 | -8.615850e-47 |
| Msa1269940 | Msa1372760 | 0.826349 | 2.848946e-54 | -8.615850e-47 |
| Msa1269940 | Msa1376760 | 0.805415 | 1.349774e-49 | -8.615850e-47 |
| Msa1269940 | Msa1390050 | 0.811367 | 7.252473e-51 | -8.615850e-47 |
| Msa1269940 | Msa1411020 | 0.831918 | 1.271317e-55 | -8.615850e-47 |
| Msa1269940 | Msa1420490 | 0.820503 | 6.626983e-53 | -8.615850e-47 |
| Msa1269940 | Msa1420820 | 0.806361 | 8.540258e-50 | -8.615850e-47 |
| Msa1269940 | Msa1423390 | 0.820412 | 6.953104e-53 | -8.615850e-47 |
| Msa1269940 | Msa1424290 | 0.831301 | 1.803488e-55 | -8.615850e-47 |
| Msa1269940 | Msa1427230 | 0.831872 | 1.305066e-55 | -8.615850e-47 |
| Msa1269940 | Msa1430680 | 0.807921 | 3.991044e-50 | -8.615850e-47 |
| Msa1269940 | Msa1434350 | 0.831319 | 1.785522e-55 | -8.615850e-47 |
| Msa1269940 | Msa1439320 | 0.835475 | 1.642168e-56 | -8.615850e-47 |
| Msa1269940 | Msa1440370 | 0.821150 | 4.705615e-53 | -8.615850e-47 |
| Msa1269940 | Msa1440810 | 0.822974 | 1.777006e-53 | -8.615850e-47 |
| Msa1269940 | Msa1448640 | 0.802738 | 4.865565e-49 | -8.615850e-47 |
| Msa1269940 | Msa1451620 | -0.833679 | 4.642198e-56 | -8.615850e-47 |
| Msa1269940 | Msa1453560 | 0.811185 | 7.945145e-51 | -8.615850e-47 |
| Msa1269940 | Msa1458750 | 0.801980 | 6.969074e-49 | -8.615850e-47 |
| Msa1269940 | Msa1460830 | 0.826839 | 2.176749e-54 | -8.615850e-47 |
| Msa1269940 | Msa1464940 | 0.807427 | 5.082378e-50 | -8.615850e-47 |
| Msa0373930 | Msa1269940 | 0.805133 | 1.546124e-49 | -8.615850e-47 |
| Msa0376590 | Msa1269940 | 0.809841 | 1.549746e-50 | -8.615850e-47 |
| Msa0379640 | Msa1269940 | 0.834986 | 2.181618e-56 | -8.615850e-47 |
| Msa0426930 | Msa1269940 | 0.822717 | 2.040283e-53 | -8.615850e-47 |
| Msa0431690 | Msa1269940 | 0.812970 | 3.242016e-51 | -8.615850e-47 |
| Msa0434000 | Msa1269940 | 0.806415 | 8.316796e-50 | -8.615850e-47 |
| Msa0475490 | Msa1269940 | 0.803196 | 3.911931e-49 | -8.615850e-47 |
| Msa0992280 | Msa1269940 | 0.815096 | 1.101364e-51 | -8.615850e-47 |
| Msa1002360 | Msa1269940 | 0.825458 | 4.636568e-54 | -8.615850e-47 |
| Msa1014540 | Msa1269940 | 0.800930 | 1.143986e-48 | -8.615850e-47 |
| Msa1075220 | Msa1269940 | -0.801872 | 7.336661e-49 | -8.615850e-47 |
| Msa1082580 | Msa1269940 | 0.811479 | 6.858699e-51 | -8.615850e-47 |
| Msa1090260 | Msa1269940 | 0.818818 | 1.607613e-52 | -8.615850e-47 |
| Msa0258760 | Msa1269940 | 0.805110 | 1.563997e-49 | -8.615850e-47 |
| Msa0278190 | Msa1269940 | 0.805002 | 1.647022e-49 | -8.615850e-47 |
| Msa0315290 | Msa1269940 | 0.801558 | 8.506735e-49 | -8.615850e-47 |
| Msa0339620 | Msa1269940 | 0.832975 | 6.955048e-56 | -8.615850e-47 |
| Msa0344910 | Msa1269940 | 0.816912 | 4.330765e-52 | -8.615850e-47 |
| Msa0344980 | Msa1269940 | 0.811856 | 5.678742e-51 | -8.615850e-47 |
| Msa1181800 | Msa1269940 | 0.809219 | 2.108491e-50 | -8.615850e-47 |
| Msa1205130 | Msa1269940 | 0.803614 | 3.205544e-49 | -8.615850e-47 |
| Msa0516370 | Msa1269940 | 0.805619 | 1.223165e-49 | -8.615850e-47 |
| Msa0516440 | Msa1269940 | 0.809766 | 1.608560e-50 | -8.615850e-47 |
| Msa0532810 | Msa1269940 | -0.801845 | 7.429245e-49 | -8.615850e-47 |
| Msa0553460 | Msa1269940 | 0.800357 | 1.497315e-48 | -8.615850e-47 |
| Msa0554740 | Msa1269940 | 0.817484 | 3.220273e-52 | -8.615850e-47 |
| Msa0585230 | Msa1269940 | 0.825702 | 4.058310e-54 | -8.615850e-47 |
| Msa0598880 | Msa1269940 | -0.805391 | 1.365496e-49 | -8.615850e-47 |
| Msa0599890 | Msa1269940 | 0.813182 | 2.913222e-51 | -8.615850e-47 |
| Msa0842710 | Msa1269940 | 0.837326 | 5.552608e-57 | -8.615850e-47 |
| Msa0861130 | Msa1269940 | 0.811414 | 7.084069e-51 | -8.615850e-47 |
| Msa0882690 | Msa1269940 | 0.814439 | 1.540080e-51 | -8.615850e-47 |
| Msa0900980 | Msa1269940 | 0.801394 | 9.192978e-49 | -8.615850e-47 |
| Msa0908770 | Msa1269940 | -0.805923 | 1.055986e-49 | -8.615850e-47 |
| Msa0919850 | Msa1269940 | 0.815246 | 1.019863e-51 | -8.615850e-47 |
| Msa0924310 | Msa1269940 | 0.806502 | 7.972941e-50 | -8.615850e-47 |
| Msa0925870 | Msa1269940 | 0.811123 | 8.194422e-51 | -8.615850e-47 |
| Msa0942080 | Msa1269940 | -0.817561 | 3.094104e-52 | -8.615850e-47 |
| Msa0944550 | Msa1269940 | 0.807979 | 3.880184e-50 | -8.615850e-47 |
| Msa0967180 | Msa1269940 | 0.809986 | 1.442280e-50 | -8.615850e-47 |
| Msa0969520 | Msa1269940 | 0.805154 | 1.530758e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1269940 | MtrunA17_Chr1g0151801 | 71.528 | 144 | 8 | 1 | 101 | 211 | 69 | 212 | 1.96e-63 | 205 |
| Msa1269940 | MtrunA17_Chr3g0135491 | 61.111 | 144 | 23 | 1 | 101 | 211 | 60 | 203 | 9.34e-54 | 180 |
| Msa1269940 | MtrunA17_Chr4g0056561 | 53.472 | 144 | 34 | 1 | 101 | 211 | 70 | 213 | 5.88e-43 | 151 |
| Msa1269940 | MtrunA17_Chr7g0248651 | 47.222 | 144 | 43 | 1 | 101 | 211 | 58 | 201 | 1.04e-37 | 137 |
| Msa1269940 | MtrunA17_Chr7g0246051 | 47.183 | 142 | 42 | 1 | 103 | 211 | 59 | 200 | 1.83e-37 | 132 |
| Msa1269940 | MtrunA17_Chr7g0226421 | 44.094 | 127 | 33 | 2 | 94 | 182 | 33 | 159 | 3.70e-31 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1269940 | AT4G32940.1 | 60.417 | 144 | 24 | 1 | 101 | 211 | 70 | 213 | 3.08e-54 | 181 |
| Msa1269940 | AT2G25940.1 | 60.417 | 144 | 24 | 1 | 101 | 211 | 55 | 198 | 1.54e-53 | 179 |
| Msa1269940 | AT1G62710.1 | 54.167 | 144 | 33 | 1 | 101 | 211 | 62 | 205 | 8.96e-46 | 159 |
| Msa1269940 | AT3G20210.1 | 50.000 | 144 | 39 | 1 | 101 | 211 | 57 | 200 | 1.18e-42 | 150 |
Find 93 sgRNAs with CRISPR-Local
Find 277 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAACTTCTCAACAATTT+TGG | 0.154138 | 8_3:-3286388 | Msa1269940:three_prime_UTR |
| CTGATCCATCTGTTGATGAT+TGG | 0.287451 | 8_3:-3287328 | Msa1269940:three_prime_UTR |
| TTCTGATCAGCTACCATATC+AGG | 0.328803 | 8_3:+3286268 | None:intergenic |
| TGGAATCTGGAAGAGATATA+AGG | 0.338125 | 8_3:-3290817 | Msa1269940:CDS |
| CATGGAGGTCCAGGGGTTCT+TGG | 0.340017 | 8_3:-3289546 | Msa1269940:intron |
| TCCTAATGAGGTGGTTTAGA+TGG | 0.351426 | 8_3:-3286423 | Msa1269940:three_prime_UTR |
| GAAACAATTCTCAAACTTGT+AGG | 0.363101 | 8_3:-3287590 | Msa1269940:CDS |
| AGTTCCATGTGATGCAGTTT+GGG | 0.368992 | 8_3:-3286357 | Msa1269940:three_prime_UTR |
| AGAAATTGTAACCTTTGAAT+CGG | 0.388325 | 8_3:+3290660 | None:intergenic |
| TGATCCATCTGTTGATGATT+GGG | 0.389473 | 8_3:-3287327 | Msa1269940:three_prime_UTR |
| CTAGCAAGAAGCTTCTATAT+AGG | 0.390561 | 8_3:-3287544 | Msa1269940:intron |
| TGAGCTTTGACGGTGAGCTT+TGG | 0.392923 | 8_3:+3291024 | None:intergenic |
| TCCATCTAAACCACCTCATT+AGG | 0.403553 | 8_3:+3286422 | None:intergenic |
| GTGATGGAGAGGGTGGAATC+TGG | 0.407879 | 8_3:-3290830 | Msa1269940:intron |
| GAGTTCCATGTGATGCAGTT+TGG | 0.410234 | 8_3:-3286358 | Msa1269940:three_prime_UTR |
| TTTGTATACTACACTGATCA+TGG | 0.415438 | 8_3:-3289564 | Msa1269940:CDS |
| AGGAGCGGAATCGTTGATTT+CGG | 0.416025 | 8_3:+3290729 | None:intergenic |
| TTAATTATGACTCCAGGCCT+TGG | 0.438134 | 8_3:+3289962 | None:intergenic |
| GTCTCTTCAGGTATGCCTGT+TGG | 0.440122 | 8_3:-3288999 | Msa1269940:intron |
| ATCAGATTCAAATCGTTTGA+AGG | 0.445339 | 8_3:+3286477 | None:intergenic |
| TCAAGGGAGCCTTGCCGCCA+TGG | 0.449335 | 8_3:+3286236 | None:intergenic |
| GAGTGAGTGCAGTAGACAAT+AGG | 0.450767 | 8_3:-3286120 | Msa1269940:three_prime_UTR |
| TACACTGATCATGGAGGTCC+AGG | 0.458300 | 8_3:-3289555 | Msa1269940:CDS |
| GGTGAGCTTTGGAGGTTTCA+CGG | 0.458353 | 8_3:+3291035 | None:intergenic |
| CAGATGAAGAACTGCTTAAG+TGG | 0.460851 | 8_3:-3286300 | Msa1269940:three_prime_UTR |
| GCTTTGACGGTGAGCTTTGG+AGG | 0.460896 | 8_3:+3291027 | None:intergenic |
| GTCATGCGTATCAATTATTG+AGG | 0.462318 | 8_3:-3290054 | Msa1269940:CDS |
| CATGTGATGCAGTTTGGGAC+TGG | 0.462857 | 8_3:-3286352 | Msa1269940:three_prime_UTR |
| GGAATCTGGAAGAGATATAA+GGG | 0.473052 | 8_3:-3290816 | Msa1269940:CDS |
| GCATACAAGTAAGGACCAAC+AGG | 0.477482 | 8_3:+3288984 | None:intergenic |
| GAAATTGTAACCTTTGAATC+GGG | 0.482521 | 8_3:+3290661 | None:intergenic |
| GCACTCACTCATAATTTGCT+TGG | 0.491595 | 8_3:+3286133 | None:intergenic |
| AGTGGGAAAGTTGTGGATAG+TGG | 0.492444 | 8_3:-3289603 | Msa1269940:CDS |
| CAAGGGAGCCTTGCCGCCAT+GGG | 0.494882 | 8_3:+3286237 | None:intergenic |
| TCATAAACATCACCACCATC+AGG | 0.496461 | 8_3:+3289935 | None:intergenic |
| GCTTTGACGGTGAGCTTTGA+CGG | 0.498645 | 8_3:+3291014 | None:intergenic |
| AGATCAGATGCATACAAGTA+AGG | 0.499897 | 8_3:+3288975 | None:intergenic |
| GTAACCTTTGAATCGGGTGA+TGG | 0.501298 | 8_3:+3290667 | None:intergenic |
| GCTTGGACGGTGAGCTTTGA+CGG | 0.502837 | 8_3:+3291001 | None:intergenic |
| AGAGCGATGTAGCAACGGTA+AGG | 0.507375 | 8_3:+3290775 | None:intergenic |
| CAATCATCAACAGATGGATC+AGG | 0.509834 | 8_3:+3287329 | None:intergenic |
| ATCAGGAAAATCAATATCAA+TGG | 0.513968 | 8_3:+3287346 | None:intergenic |
| AGGAAACCACTGATTGAACT+TGG | 0.513981 | 8_3:+3290950 | None:intergenic |
| GGTTTGTTAATTATGACTCC+AGG | 0.517005 | 8_3:+3289956 | None:intergenic |
| TCAGATTCAAATCGTTTGAA+GGG | 0.518964 | 8_3:+3286478 | None:intergenic |
| CTGTCATGTATATCAGAAAG+TGG | 0.520857 | 8_3:-3286076 | Msa1269940:three_prime_UTR |
| CCATCTGTTGATGATTGGGT+TGG | 0.529043 | 8_3:-3287323 | Msa1269940:three_prime_UTR |
| GAATCTGATTCTGATTCACA+TGG | 0.529563 | 8_3:-3286463 | Msa1269940:three_prime_UTR |
| GGAGATTCACGATTGGAGCT+TGG | 0.532522 | 8_3:+3290984 | None:intergenic |
| TCAGCTCTTACAGGTGGGAG+TGG | 0.533587 | 8_3:-3289621 | Msa1269940:intron |
| TAACCTTTGAATCGGGTGAT+GGG | 0.534964 | 8_3:+3290668 | None:intergenic |
| TTTCCCATCACCCGATTCAA+AGG | 0.536125 | 8_3:-3290671 | Msa1269940:CDS |
| ATATGGTAGCTGATCAGAAA+TGG | 0.538142 | 8_3:-3286264 | Msa1269940:three_prime_UTR |
| AGGTGGGAGTGGGAAAGTTG+TGG | 0.538762 | 8_3:-3289610 | Msa1269940:CDS |
| AATGTAGAGAATCCAAGGCC+TGG | 0.541898 | 8_3:-3289974 | Msa1269940:CDS |
| TTGAACTTGGACGGTGAGGT+TGG | 0.560420 | 8_3:+3290963 | None:intergenic |
| AGGCCTTGGATTCTCTACAT+TGG | 0.562654 | 8_3:+3289976 | None:intergenic |
| AGATGAAGAACTGCTTAAGT+GGG | 0.564810 | 8_3:-3286299 | Msa1269940:three_prime_UTR |
| GCGTATCAATTATTGAGGAA+TGG | 0.567662 | 8_3:-3290049 | Msa1269940:CDS |
| GTGATGCAGTTTGGGACTGG+TGG | 0.568977 | 8_3:-3286349 | Msa1269940:three_prime_UTR |
| GTCATAATTAACAAACCTGA+TGG | 0.573212 | 8_3:-3289950 | Msa1269940:CDS |
| AATTACTCACCAAGAACCCC+TGG | 0.573730 | 8_3:+3289537 | None:intergenic |
| ATTCACGATTGGAGCTTGGA+CGG | 0.575479 | 8_3:+3290988 | None:intergenic |
| CTTCCAATGTAGAGAATCCA+AGG | 0.584961 | 8_3:-3289979 | Msa1269940:CDS |
| TGAGGTTGGAGATTCACGAT+TGG | 0.587323 | 8_3:+3290977 | None:intergenic |
| ATGGTGTGCCCATGGCGGCA+AGG | 0.589094 | 8_3:-3286245 | Msa1269940:three_prime_UTR |
| GAGCGATGTAGCAACGGTAA+GGG | 0.592486 | 8_3:+3290776 | None:intergenic |
| CAGTCCCAAACTGCATCACA+TGG | 0.592917 | 8_3:+3286353 | None:intergenic |
| ACACTGATCATGGAGGTCCA+GGG | 0.595033 | 8_3:-3289554 | Msa1269940:CDS |
| CAGCTCTTACAGGTGGGAGT+GGG | 0.602741 | 8_3:-3289620 | Msa1269940:intron |
| AACCACTGATTGAACTTGGA+CGG | 0.602863 | 8_3:+3290954 | None:intergenic |
| GACTGGTGGAAAGTACAGCT+TGG | 0.605366 | 8_3:-3286335 | Msa1269940:three_prime_UTR |
| CCAACCCAATCATCAACAGA+TGG | 0.612244 | 8_3:+3287323 | None:intergenic |
| TATCAATTATTGAGGAATGG+TGG | 0.612607 | 8_3:-3290046 | Msa1269940:CDS |
| TGGAGGGACATTGACATGAA+CGG | 0.614172 | 8_3:-3286513 | Msa1269940:three_prime_UTR |
| TGATTCTAATGACGAGAGTG+TGG | 0.617071 | 8_3:-3286166 | Msa1269940:three_prime_UTR |
| CACTGATCATGGAGGTCCAG+GGG | 0.620699 | 8_3:-3289553 | Msa1269940:CDS |
| CACCGTCCAAGTTCAATCAG+TGG | 0.621289 | 8_3:-3290956 | Msa1269940:intron |
| GATCAAGAGCGATGTAGCAA+CGG | 0.624037 | 8_3:+3290770 | None:intergenic |
| AAATCAATATCAATGGTCAA+CGG | 0.633392 | 8_3:+3287353 | None:intergenic |
| TCAGGGTGAAGATACTCAGT+GGG | 0.634801 | 8_3:-3287379 | Msa1269940:intron |
| AATCTGATTCTGATTCACAT+GGG | 0.638864 | 8_3:-3286462 | Msa1269940:three_prime_UTR |
| GATCAGAAATGGTGTGCCCA+TGG | 0.641634 | 8_3:-3286253 | Msa1269940:three_prime_UTR |
| TTAACAGCTTGAAGAGACGT+AGG | 0.645425 | 8_3:+3290709 | None:intergenic |
| ATAATTAACAAACCTGATGG+TGG | 0.650511 | 8_3:-3289947 | Msa1269940:intron |
| AAAATGCTTCAAGGCAGTGG+GGG | 0.655908 | 8_3:+3286202 | None:intergenic |
| GATGAAGAACTGCTTAAGTG+GGG | 0.656412 | 8_3:-3286298 | Msa1269940:three_prime_UTR |
| AGCTTGAAGAGACGTAGGAG+CGG | 0.657960 | 8_3:+3290714 | None:intergenic |
| ATGAAGAACTGCTTAAGTGG+GGG | 0.668914 | 8_3:-3286297 | Msa1269940:three_prime_UTR |
| TTCAGGGTGAAGATACTCAG+TGG | 0.688983 | 8_3:-3287380 | Msa1269940:intron |
| CTGATTGAACTTGGACGGTG+AGG | 0.709832 | 8_3:+3290959 | None:intergenic |
| GTATACTACACTGATCATGG+AGG | 0.754047 | 8_3:-3289561 | Msa1269940:CDS |
| CAGAAATGGTGTGCCCATGG+CGG | 0.769825 | 8_3:-3286250 | Msa1269940:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATACAAAAAGAAATTA+AGG | + | chr8_3:3286882-3286901 | None:intergenic | 10.0% |
| !!! | TCTATTTTTTAAAATACTAT+CGG | - | chr8_3:3287628-3287647 | Msa1269940:intron | 10.0% |
| !!! | TATTTAATTATAACTGTTTT+TGG | + | chr8_3:3287900-3287919 | None:intergenic | 10.0% |
| !! | AATTTAATAGAATTTGATAA+TGG | + | chr8_3:3290351-3290370 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTGAACAACAAAT+GGG | + | chr8_3:3286136-3286155 | None:intergenic | 15.0% |
| !!! | AATTTTTTTTGAACAACAAA+TGG | + | chr8_3:3286137-3286156 | None:intergenic | 15.0% |
| !! | TAATAGATAACAAGTAATAT+TGG | + | chr8_3:3286509-3286528 | None:intergenic | 15.0% |
| !!! | ATATGATCAATAACATATTT+TGG | - | chr8_3:3286856-3286875 | Msa1269940:intron | 15.0% |
| !! | TATACAAAAATATGATCATT+GGG | + | chr8_3:3287438-3287457 | None:intergenic | 15.0% |
| !!! | AAAAGCAATTGTTATTTTAA+TGG | - | chr8_3:3288479-3288498 | Msa1269940:intron | 15.0% |
| !!! | AATTTTACTAAGTTAAAGTA+AGG | + | chr8_3:3289559-3289578 | None:intergenic | 15.0% |
| !!! | TAAGTTTTAATAGTTATGTA+GGG | - | chr8_3:3290161-3290180 | Msa1269940:intron | 15.0% |
| !!! | TTTATCATTGTTGTTATTGT+AGG | - | chr8_3:3286420-3286439 | Msa1269940:three_prime_UTR | 20.0% |
| !!! | AATATTAGTTTCTTGTTTAG+TGG | + | chr8_3:3286571-3286590 | None:intergenic | 20.0% |
| !!! | ACTTATAATTTAAAGTCAAC+TGG | - | chr8_3:3286617-3286636 | Msa1269940:intron | 20.0% |
| !! | AATGAAAATAGTTGAATGTA+TGG | - | chr8_3:3286743-3286762 | Msa1269940:intron | 20.0% |
| !! | ATGAAAATAGTTGAATGTAT+GGG | - | chr8_3:3286744-3286763 | Msa1269940:intron | 20.0% |
| !! | TTGAAAAACAATTTATGTAC+AGG | - | chr8_3:3286774-3286793 | Msa1269940:intron | 20.0% |
| !! | TGAAAAACAATTTATGTACA+GGG | - | chr8_3:3286775-3286794 | Msa1269940:intron | 20.0% |
| !! | TCAATTTCTCAAATTATTAC+TGG | - | chr8_3:3287219-3287238 | Msa1269940:intron | 20.0% |
| !! | GTATACAAAAATATGATCAT+TGG | + | chr8_3:3287439-3287458 | None:intergenic | 20.0% |
| !!! | AAACTTTTTTATGAAAGACA+TGG | - | chr8_3:3287517-3287536 | Msa1269940:intron | 20.0% |
| !! | TTGAATATTATCACATGTAT+CGG | + | chr8_3:3287603-3287622 | None:intergenic | 20.0% |
| !!! | TTTTTTGACTTATGTAATTG+TGG | - | chr8_3:3288284-3288303 | Msa1269940:intron | 20.0% |
| !! | GAAATCAGATATTGAAATTA+TGG | + | chr8_3:3288989-3289008 | None:intergenic | 20.0% |
| !! | TTTATCTGTATTCACTTTAT+CGG | - | chr8_3:3289298-3289317 | Msa1269940:intron | 20.0% |
| !! | ATTATTGCTTATTGGAAAAA+AGG | + | chr8_3:3289346-3289365 | None:intergenic | 20.0% |
| !!! | TAAAATGGATTATTGCTTAT+TGG | + | chr8_3:3289354-3289373 | None:intergenic | 20.0% |
| !! | GTTGAATTATGATATTATGT+TGG | - | chr8_3:3289840-3289859 | Msa1269940:intron | 20.0% |
| !! | ATAATTTATTAAGCTGAACT+AGG | + | chr8_3:3290025-3290044 | None:intergenic | 20.0% |
| !! | ACATAACTATTAAAACTTAG+AGG | + | chr8_3:3290160-3290179 | None:intergenic | 20.0% |
| !!! | CTAAGTTTTAATAGTTATGT+AGG | - | chr8_3:3290160-3290179 | Msa1269940:intron | 20.0% |
| ! | AGAAATTGTAACCTTTGAAT+CGG | + | chr8_3:3286357-3286376 | None:intergenic | 25.0% |
| !! | ATTGTTGTTATTGTAGGAAT+CGG | - | chr8_3:3286426-3286445 | Msa1269940:three_prime_UTR | 25.0% |
| ! | TGAAAATAGTTGAATGTATG+GGG | - | chr8_3:3286745-3286764 | Msa1269940:intron | 25.0% |
| ! | ATTTATGTACAGGGATTAAA+TGG | - | chr8_3:3286784-3286803 | Msa1269940:intron | 25.0% |
| ! | AAATGGAAACTGTTTAATAG+AGG | - | chr8_3:3286801-3286820 | Msa1269940:intron | 25.0% |
| !!! | ACTAATATTGACTTTACCTT+TGG | + | chr8_3:3287112-3287131 | None:intergenic | 25.0% |
| ! | AGCTATTGAATGTAACAATA+TGG | + | chr8_3:3287199-3287218 | None:intergenic | 25.0% |
| ! | TGTTTGTATGTGTTTACAAA+TGG | - | chr8_3:3287699-3287718 | Msa1269940:intron | 25.0% |
| !!! | TATTCCTTGCTATTCTTATT+TGG | - | chr8_3:3287993-3288012 | Msa1269940:intron | 25.0% |
| ! | ACAATCAAAACATACAACAT+GGG | + | chr8_3:3288443-3288462 | None:intergenic | 25.0% |
| ! | TACAATCAAAACATACAACA+TGG | + | chr8_3:3288444-3288463 | None:intergenic | 25.0% |
| ! | TATGTCTTTATGCTTGATAT+CGG | - | chr8_3:3288774-3288793 | Msa1269940:intron | 25.0% |
| ! | AAAGAATTAAGATCTCATCA+AGG | + | chr8_3:3288898-3288917 | None:intergenic | 25.0% |
| !!! | TTCAGATTTTGAAACAGAAT+TGG | - | chr8_3:3288930-3288949 | Msa1269940:CDS | 25.0% |
| !! | CAAGTACTATCTTTATTTGT+AGG | - | chr8_3:3289068-3289087 | Msa1269940:intron | 25.0% |
| !!! | TTGTTTCTATCTACAATTTG+AGG | + | chr8_3:3289411-3289430 | None:intergenic | 25.0% |
| ! | AAATCAATATCAATGGTCAA+CGG | + | chr8_3:3289664-3289683 | None:intergenic | 25.0% |
| ! | ATCAGGAAAATCAATATCAA+TGG | + | chr8_3:3289671-3289690 | None:intergenic | 25.0% |
| !! | GTTTTACCAAGTAAAAAACT+TGG | + | chr8_3:3290130-3290149 | None:intergenic | 25.0% |
| !!! | TAGAATTTGATAATGGATGT+TGG | + | chr8_3:3290344-3290363 | None:intergenic | 25.0% |
| ! | TTAAACTAATGTAATGCAGA+GGG | - | chr8_3:3290424-3290443 | Msa1269940:intron | 25.0% |
| !! | TTTTCTTGAATCTATATGGA+GGG | - | chr8_3:3290485-3290504 | Msa1269940:intron | 25.0% |
| !! | TTTGAACTTCTCAACAATTT+TGG | - | chr8_3:3290626-3290645 | Msa1269940:intron | 25.0% |
| !! | TTTGAACAACAAATGGGTTA+GGG | + | chr8_3:3286130-3286149 | None:intergenic | 30.0% |
| !! | TTTTGAACAACAAATGGGTT+AGG | + | chr8_3:3286131-3286150 | None:intergenic | 30.0% |
| GAAATTGTAACCTTTGAATC+GGG | + | chr8_3:3286356-3286375 | None:intergenic | 30.0% | |
| AGGTAATGTTGAAATTCAGA+AGG | - | chr8_3:3286821-3286840 | Msa1269940:intron | 30.0% | |
| TATCAATTATTGAGGAATGG+TGG | - | chr8_3:3286968-3286987 | Msa1269940:intron | 30.0% | |
| GTCATAATTAACAAACCTGA+TGG | - | chr8_3:3287064-3287083 | Msa1269940:intron | 30.0% | |
| ATAATTAACAAACCTGATGG+TGG | - | chr8_3:3287067-3287086 | Msa1269940:intron | 30.0% | |
| AATAAAATAGACACGAACAC+TGG | + | chr8_3:3287267-3287286 | None:intergenic | 30.0% | |
| !! | TAAGAGCTTTTTCTTATGAC+AGG | - | chr8_3:3287311-3287330 | Msa1269940:three_prime_UTR | 30.0% |
| !! | AATTTCTATGCTGCTTTACT+TGG | - | chr8_3:3287363-3287382 | Msa1269940:exon | 30.0% |
| TTTGTATACTACACTGATCA+TGG | - | chr8_3:3287450-3287469 | Msa1269940:intron | 30.0% | |
| ! | CTACTTTGAGGAAATCATAT+GGG | + | chr8_3:3287840-3287859 | None:intergenic | 30.0% |
| ! | TCTACTTTGAGGAAATCATA+TGG | + | chr8_3:3287841-3287860 | None:intergenic | 30.0% |
| AGAACACAAATTCTACTTTG+AGG | + | chr8_3:3287852-3287871 | None:intergenic | 30.0% | |
| AAAGTAGAATTTGTGTTCTG+TGG | - | chr8_3:3287853-3287872 | Msa1269940:intron | 30.0% | |
| ! | TATTCTTATTTGGTCTCTTC+AGG | - | chr8_3:3288003-3288022 | Msa1269940:intron | 30.0% |
| TTGAAGAAAAAACATGCTTC+TGG | - | chr8_3:3288072-3288091 | Msa1269940:intron | 30.0% | |
| CTTCCATGTTTGATTATTTC+AGG | - | chr8_3:3288177-3288196 | Msa1269940:intron | 30.0% | |
| TAGCCTGAAATAATCAAACA+TGG | + | chr8_3:3288183-3288202 | None:intergenic | 30.0% | |
| !! | TTAGTTTGTCTTCAACGAAA+AGG | + | chr8_3:3288239-3288258 | None:intergenic | 30.0% |
| CAAACTAAGCTAATCAAAAC+CGG | - | chr8_3:3288251-3288270 | Msa1269940:intron | 30.0% | |
| GTCAAAAAAATTTAGTGTGC+CGG | + | chr8_3:3288273-3288292 | None:intergenic | 30.0% | |
| ATAGAGATGGAAACTGAAAT+AGG | - | chr8_3:3288550-3288569 | Msa1269940:intron | 30.0% | |
| TAGAGATGGAAACTGAAATA+GGG | - | chr8_3:3288551-3288570 | Msa1269940:intron | 30.0% | |
| TTCTCATATTTGTGAACATC+TGG | + | chr8_3:3288611-3288630 | None:intergenic | 30.0% | |
| ATGTTGAGTGCTATAAATCA+CGG | - | chr8_3:3288666-3288685 | Msa1269940:intron | 30.0% | |
| TCAAACCTATACAAAGAATG+AGG | + | chr8_3:3288807-3288826 | None:intergenic | 30.0% | |
| !! | GACATGTATTAAGCTGATTT+TGG | - | chr8_3:3288837-3288856 | Msa1269940:intron | 30.0% |
| !!! | AGATTTTGAAACAGAATTGG+TGG | - | chr8_3:3288933-3288952 | Msa1269940:CDS | 30.0% |
| ! | AAAGATAGTACTTGCTAGAA+GGG | + | chr8_3:3289062-3289081 | None:intergenic | 30.0% |
| ! | TAAAGATAGTACTTGCTAGA+AGG | + | chr8_3:3289063-3289082 | None:intergenic | 30.0% |
| GTGAATACAGATAAATTCAG+TGG | + | chr8_3:3289293-3289312 | None:intergenic | 30.0% | |
| TCAGTTCAGTCAAACTAAAA+TGG | + | chr8_3:3289369-3289388 | None:intergenic | 30.0% | |
| GAAACAATTCTCAAACTTGT+AGG | - | chr8_3:3289424-3289443 | Msa1269940:intron | 30.0% | |
| TAACACTAATCAATCTTGCA+TGG | + | chr8_3:3289509-3289528 | None:intergenic | 30.0% | |
| AAGATTGATTAGTGTTAGCA+GGG | - | chr8_3:3289512-3289531 | Msa1269940:intron | 30.0% | |
| ! | ATTATGTTGGTGTTTAAGTG+CGG | - | chr8_3:3289853-3289872 | Msa1269940:intron | 30.0% |
| AGATACAACAGGTAAAAACA+CGG | + | chr8_3:3289968-3289987 | None:intergenic | 30.0% | |
| !!! | TAAGCACCAAGTTTTTTACT+TGG | - | chr8_3:3290121-3290140 | Msa1269940:intron | 30.0% |
| CTATTAAAACTTAGAGGACT+TGG | + | chr8_3:3290154-3290173 | None:intergenic | 30.0% | |
| !! | TTGATAATGGATGTTGGATA+AGG | + | chr8_3:3290338-3290357 | None:intergenic | 30.0% |
| !! | TTTTGACTGCATTCTTTAAC+AGG | - | chr8_3:3290369-3290388 | Msa1269940:intron | 30.0% |
| CTTAAACTAATGTAATGCAG+AGG | - | chr8_3:3290423-3290442 | Msa1269940:intron | 30.0% | |
| GGGATCAATTGGTATTAATT+TGG | - | chr8_3:3290444-3290463 | Msa1269940:intron | 30.0% | |
| ! | CAGGTTTTCTTGAATCTATA+TGG | - | chr8_3:3290481-3290500 | Msa1269940:intron | 30.0% |
| ! | GTTTTCTTGAATCTATATGG+AGG | - | chr8_3:3290484-3290503 | Msa1269940:intron | 30.0% |
| TCAGATTCAAATCGTTTGAA+GGG | + | chr8_3:3290539-3290558 | None:intergenic | 30.0% | |
| ATCAGATTCAAATCGTTTGA+AGG | + | chr8_3:3290540-3290559 | None:intergenic | 30.0% | |
| AATCTGATTCTGATTCACAT+GGG | - | chr8_3:3290552-3290571 | Msa1269940:intron | 30.0% | |
| TGAGATCAAAAAATGCTTCA+AGG | + | chr8_3:3290824-3290843 | None:intergenic | 30.0% | |
| GTTAGGGTTTCACGATTTAA+AGG | + | chr8_3:3286114-3286133 | None:intergenic | 35.0% | |
| ! | CACTGATTGAAAAGAGGTAA+GGG | + | chr8_3:3286167-3286186 | None:intergenic | 35.0% |
| ! | TCACTGATTGAAAAGAGGTA+AGG | + | chr8_3:3286168-3286187 | None:intergenic | 35.0% |
| ! | TACCTCTTTTCAATCAGTGA+TGG | - | chr8_3:3286168-3286187 | Msa1269940:three_prime_UTR | 35.0% |
| !! | TTTTCAATCAGTGATGGAGA+GGG | - | chr8_3:3286174-3286193 | Msa1269940:three_prime_UTR | 35.0% |
| TGGAATCTGGAAGAGATATA+AGG | - | chr8_3:3286197-3286216 | Msa1269940:three_prime_UTR | 35.0% | |
| GGAATCTGGAAGAGATATAA+GGG | - | chr8_3:3286198-3286217 | Msa1269940:three_prime_UTR | 35.0% | |
| !! | GAGTTGATAATAGCTGACAT+CGG | + | chr8_3:3286652-3286671 | None:intergenic | 35.0% |
| ! | ACTGCTATACAGCAACTTTT+TGG | + | chr8_3:3286714-3286733 | None:intergenic | 35.0% |
| !! | TTTTTGTTGCTTGCTTCATC+AGG | - | chr8_3:3286928-3286947 | Msa1269940:intron | 35.0% |
| GTCATGCGTATCAATTATTG+AGG | - | chr8_3:3286960-3286979 | Msa1269940:intron | 35.0% | |
| GCGTATCAATTATTGAGGAA+TGG | - | chr8_3:3286965-3286984 | Msa1269940:intron | 35.0% | |
| !! | GGTTTGTTAATTATGACTCC+AGG | + | chr8_3:3287061-3287080 | None:intergenic | 35.0% |
| TGTTTATGAAGGAGTTCCAA+AGG | - | chr8_3:3287093-3287112 | Msa1269940:intron | 35.0% | |
| TTCTTATGACAGGATTACAC+TGG | - | chr8_3:3287321-3287340 | Msa1269940:three_prime_UTR | 35.0% | |
| GGAAATAAATCAGCTCTTAC+AGG | - | chr8_3:3287384-3287403 | Msa1269940:intron | 35.0% | |
| AATAAATCAGCTCTTACAGG+TGG | - | chr8_3:3287387-3287406 | Msa1269940:intron | 35.0% | |
| ATAAATCAGCTCTTACAGGT+GGG | - | chr8_3:3287388-3287407 | Msa1269940:intron | 35.0% | |
| GAGACCAAATAAGAATAGCA+AGG | + | chr8_3:3288000-3288019 | None:intergenic | 35.0% | |
| AGATCAGATGCATACAAGTA+AGG | + | chr8_3:3288042-3288061 | None:intergenic | 35.0% | |
| AAGAACTACACAGAACAAAC+GGG | + | chr8_3:3288160-3288179 | None:intergenic | 35.0% | |
| GAAGAACTACACAGAACAAA+CGG | + | chr8_3:3288161-3288180 | None:intergenic | 35.0% | |
| GACTTATGTAATTGTGGTAC+AGG | - | chr8_3:3288290-3288309 | Msa1269940:intron | 35.0% | |
| ! | TGTGGTACAGGTATTTTATC+TGG | - | chr8_3:3288302-3288321 | Msa1269940:intron | 35.0% |
| TACTCTTTCTGCTTAACTCT+TGG | - | chr8_3:3288410-3288429 | Msa1269940:intron | 35.0% | |
| ACTCTTTCTGCTTAACTCTT+GGG | - | chr8_3:3288411-3288430 | Msa1269940:intron | 35.0% | |
| TCAGATGGAGAAAGATTCTT+TGG | + | chr8_3:3288522-3288541 | None:intergenic | 35.0% | |
| GAATCTTTCTCCATCTGAAA+CGG | - | chr8_3:3288524-3288543 | Msa1269940:intron | 35.0% | |
| ATGGAAACTGAAATAGGGTA+TGG | - | chr8_3:3288556-3288575 | Msa1269940:intron | 35.0% | |
| CACAAATATGAGAAACAACG+TGG | - | chr8_3:3288617-3288636 | Msa1269940:intron | 35.0% | |
| TCTGTCCTCATTCTTTGTAT+AGG | - | chr8_3:3288799-3288818 | Msa1269940:intron | 35.0% | |
| ! | ACAAGAGAGAAGCACATATT+AGG | - | chr8_3:3288860-3288879 | Msa1269940:intron | 35.0% |
| ! | AGTTTCAGAGATCTGAAATG+AGG | - | chr8_3:3289188-3289207 | Msa1269940:intron | 35.0% |
| ATCTGTATTCACTTTATCGG+AGG | - | chr8_3:3289301-3289320 | Msa1269940:intron | 35.0% | |
| GAGGAACATCAATAAACAAG+AGG | + | chr8_3:3289392-3289411 | None:intergenic | 35.0% | |
| CTAGCAAGAAGCTTCTATAT+AGG | - | chr8_3:3289470-3289489 | Msa1269940:intron | 35.0% | |
| CAAGATTGATTAGTGTTAGC+AGG | - | chr8_3:3289511-3289530 | Msa1269940:intron | 35.0% | |
| ! | TTGTTGTGTGCTTTGATTTC+AGG | - | chr8_3:3289617-3289636 | Msa1269940:intron | 35.0% |
| ! | TGTTGTGTGCTTTGATTTCA+GGG | - | chr8_3:3289618-3289637 | Msa1269940:intron | 35.0% |
| !! | TGATCCATCTGTTGATGATT+GGG | - | chr8_3:3289687-3289706 | Msa1269940:intron | 35.0% |
| !! | ATTTCTAGCTAGCAGTAATC+TGG | - | chr8_3:3290071-3290090 | Msa1269940:intron | 35.0% |
| ! | TCATTTTCAGTGCGTCATTA+TGG | - | chr8_3:3290211-3290230 | Msa1269940:intron | 35.0% |
| GTTGGATCGTAGTTTGATAA+TGG | - | chr8_3:3290261-3290280 | Msa1269940:intron | 35.0% | |
| TGGATAAGGTGATCATTGTT+TGG | + | chr8_3:3290324-3290343 | None:intergenic | 35.0% | |
| GAATCTGATTCTGATTCACA+TGG | - | chr8_3:3290551-3290570 | Msa1269940:intron | 35.0% | |
| !!! | CATTTCGAGTTTTCCTAATG+AGG | - | chr8_3:3290579-3290598 | Msa1269940:intron | 35.0% |
| AGATGAAGAACTGCTTAAGT+GGG | - | chr8_3:3290715-3290734 | Msa1269940:CDS | 35.0% | |
| ATATGGTAGCTGATCAGAAA+TGG | - | chr8_3:3290750-3290769 | Msa1269940:CDS | 35.0% | |
| AAAAAATGCTTCAAGGCAGT+GGG | + | chr8_3:3290817-3290836 | None:intergenic | 35.0% | |
| CTGTCATGTATATCAGAAAG+TGG | - | chr8_3:3290938-3290957 | Msa1269940:intron | 35.0% | |
| !!! | AGAAAGTGGTTTTGATGCTT+TGG | - | chr8_3:3290952-3290971 | Msa1269940:intron | 35.0% |
| ! | AACCACTGATTGAACTTGGA+CGG | + | chr8_3:3286063-3286082 | None:intergenic | 40.0% |
| ! | AGGAAACCACTGATTGAACT+TGG | + | chr8_3:3286067-3286086 | None:intergenic | 40.0% |
| ! | CTCCATCACTGATTGAAAAG+AGG | + | chr8_3:3286173-3286192 | None:intergenic | 40.0% |
| !! | CTTTTCAATCAGTGATGGAG+AGG | - | chr8_3:3286173-3286192 | Msa1269940:three_prime_UTR | 40.0% |
| TTAACAGCTTGAAGAGACGT+AGG | + | chr8_3:3286308-3286327 | None:intergenic | 40.0% | |
| TAACCTTTGAATCGGGTGAT+GGG | + | chr8_3:3286349-3286368 | None:intergenic | 40.0% | |
| GCGATCGCGAGTATTAAAAA+TGG | - | chr8_3:3286448-3286467 | Msa1269940:three_prime_UTR | 40.0% | |
| CTTCCAATGTAGAGAATCCA+AGG | - | chr8_3:3287035-3287054 | Msa1269940:intron | 40.0% | |
| TTAATTATGACTCCAGGCCT+TGG | + | chr8_3:3287055-3287074 | None:intergenic | 40.0% | |
| TCATAAACATCACCACCATC+AGG | + | chr8_3:3287082-3287101 | None:intergenic | 40.0% | |
| ! | GATGGTGGTGATGTTTATGA+AGG | - | chr8_3:3287082-3287101 | Msa1269940:intron | 40.0% |
| ACGTCTTTAGTGTGAAGTGT+CGG | + | chr8_3:3287150-3287169 | None:intergenic | 40.0% | |
| GTATACTACACTGATCATGG+AGG | - | chr8_3:3287453-3287472 | Msa1269940:intron | 40.0% | |
| !! | AAAAGCCTAAGCCTTGTTTG+AGG | - | chr8_3:3287723-3287742 | Msa1269940:intron | 40.0% |
| AATAGCCTCAAACAAGGCTT+AGG | + | chr8_3:3287731-3287750 | None:intergenic | 40.0% | |
| TTGAGGAAATCATATGGGAG+AGG | + | chr8_3:3287835-3287854 | None:intergenic | 40.0% | |
| AGAACTACACAGAACAAACG+GGG | + | chr8_3:3288159-3288178 | None:intergenic | 40.0% | |
| ! | GGTACAGGTATTTTATCTGG+AGG | - | chr8_3:3288305-3288324 | Msa1269940:intron | 40.0% |
| CTCTTTCTGCTTAACTCTTG+GGG | - | chr8_3:3288412-3288431 | Msa1269940:intron | 40.0% | |
| GAAACTGAAATAGGGTATGG+TGG | - | chr8_3:3288559-3288578 | Msa1269940:intron | 40.0% | |
| TATGAGAAACAACGTGGTTC+TGG | - | chr8_3:3288623-3288642 | Msa1269940:intron | 40.0% | |
| ! | CAGAATTGGTGGCTGTTATT+TGG | - | chr8_3:3288944-3288963 | Msa1269940:CDS | 40.0% |
| ! | ACGCTGACAGTTTGTTCAAA+AGG | + | chr8_3:3289101-3289120 | None:intergenic | 40.0% |
| CAATCATCAACAGATGGATC+AGG | + | chr8_3:3289688-3289707 | None:intergenic | 40.0% | |
| !! | CTGATCCATCTGTTGATGAT+TGG | - | chr8_3:3289686-3289705 | Msa1269940:intron | 40.0% |
| CTATAACAACTACCAAAGCC+CGG | + | chr8_3:3289904-3289923 | None:intergenic | 40.0% | |
| !! | TTGCTTGTGTGGCTGTTTTA+AGG | - | chr8_3:3289937-3289956 | Msa1269940:intron | 40.0% |
| AGGAAGCAAACAGATACAAC+AGG | + | chr8_3:3289979-3289998 | None:intergenic | 40.0% | |
| AACTACGATCCAACTACGAT+TGG | + | chr8_3:3290255-3290274 | None:intergenic | 40.0% | |
| TGTAATGCAGAGGGATCAAT+TGG | - | chr8_3:3290433-3290452 | Msa1269940:intron | 40.0% | |
| !! | TTCGAGTTTTCCTAATGAGG+TGG | - | chr8_3:3290582-3290601 | Msa1269940:intron | 40.0% |
| TCCTAATGAGGTGGTTTAGA+TGG | - | chr8_3:3290591-3290610 | Msa1269940:intron | 40.0% | |
| TCCATCTAAACCACCTCATT+AGG | + | chr8_3:3290595-3290614 | None:intergenic | 40.0% | |
| AGTTCCATGTGATGCAGTTT+GGG | - | chr8_3:3290657-3290676 | Msa1269940:CDS | 40.0% | |
| CAGATGAAGAACTGCTTAAG+TGG | - | chr8_3:3290714-3290733 | Msa1269940:CDS | 40.0% | |
| GATGAAGAACTGCTTAAGTG+GGG | - | chr8_3:3290716-3290735 | Msa1269940:CDS | 40.0% | |
| ATGAAGAACTGCTTAAGTGG+GGG | - | chr8_3:3290717-3290736 | Msa1269940:CDS | 40.0% | |
| TTCTGATCAGCTACCATATC+AGG | + | chr8_3:3290749-3290768 | None:intergenic | 40.0% | |
| AAAAATGCTTCAAGGCAGTG+GGG | + | chr8_3:3290816-3290835 | None:intergenic | 40.0% | |
| CAAAAAATGCTTCAAGGCAG+TGG | + | chr8_3:3290818-3290837 | None:intergenic | 40.0% | |
| TGATTCTAATGACGAGAGTG+TGG | - | chr8_3:3290848-3290867 | Msa1269940:intron | 40.0% | |
| !! | GCACTCACTCATAATTTGCT+TGG | + | chr8_3:3290884-3290903 | None:intergenic | 40.0% |
| ATTCACGATTGGAGCTTGGA+CGG | + | chr8_3:3286029-3286048 | None:intergenic | 45.0% | |
| TGAGGTTGGAGATTCACGAT+TGG | + | chr8_3:3286040-3286059 | None:intergenic | 45.0% | |
| GTTCAATCAGTGGTTTCCTC+TGG | - | chr8_3:3286068-3286087 | Msa1269940:three_prime_UTR | 45.0% | |
| GATCAAGAGCGATGTAGCAA+CGG | + | chr8_3:3286247-3286266 | None:intergenic | 45.0% | |
| !! | AGGAGCGGAATCGTTGATTT+CGG | + | chr8_3:3286288-3286307 | None:intergenic | 45.0% |
| TTTCCCATCACCCGATTCAA+AGG | - | chr8_3:3286343-3286362 | Msa1269940:three_prime_UTR | 45.0% | |
| GTAACCTTTGAATCGGGTGA+TGG | + | chr8_3:3286350-3286369 | None:intergenic | 45.0% | |
| AGGCCTTGGATTCTCTACAT+TGG | + | chr8_3:3287041-3287060 | None:intergenic | 45.0% | |
| AATGTAGAGAATCCAAGGCC+TGG | - | chr8_3:3287040-3287059 | Msa1269940:intron | 45.0% | |
| AGTGGGAAAGTTGTGGATAG+TGG | - | chr8_3:3287411-3287430 | Msa1269940:intron | 45.0% | |
| AATTACTCACCAAGAACCCC+TGG | + | chr8_3:3287480-3287499 | None:intergenic | 45.0% | |
| GTCAGCAATAGCCTCAAACA+AGG | + | chr8_3:3287737-3287756 | None:intergenic | 45.0% | |
| GCATACAAGTAAGGACCAAC+AGG | + | chr8_3:3288033-3288052 | None:intergenic | 45.0% | |
| ! | TATCTGGAGGCATGTGAATC+TGG | - | chr8_3:3288318-3288337 | Msa1269940:intron | 45.0% |
| ! | TCTTTCTCCATCTGAAACGG+TGG | - | chr8_3:3288527-3288546 | Msa1269940:intron | 45.0% |
| TCTCTATCCACCGTTTCAGA+TGG | + | chr8_3:3288537-3288556 | None:intergenic | 45.0% | |
| ! | TCTGAAACGGTGGATAGAGA+TGG | - | chr8_3:3288537-3288556 | Msa1269940:intron | 45.0% |
| TGGTAAATGTGCAAGTCACG+AGG | - | chr8_3:3288579-3288598 | Msa1269940:intron | 45.0% | |
| CTTGCTAGAAGGGAAGCTAT+TGG | + | chr8_3:3289052-3289071 | None:intergenic | 45.0% | |
| GTGCAGATCAAGCAACTATC+AGG | - | chr8_3:3289135-3289154 | Msa1269940:intron | 45.0% | |
| TTCAGGGTGAAGATACTCAG+TGG | - | chr8_3:3289634-3289653 | Msa1269940:intron | 45.0% | |
| TCAGGGTGAAGATACTCAGT+GGG | - | chr8_3:3289635-3289654 | Msa1269940:intron | 45.0% | |
| CCAACCCAATCATCAACAGA+TGG | + | chr8_3:3289694-3289713 | None:intergenic | 45.0% | |
| !! | CCATCTGTTGATGATTGGGT+TGG | - | chr8_3:3289691-3289710 | Msa1269940:intron | 45.0% |
| GTTTGCTTCCTTGCGTTCTT+AGG | - | chr8_3:3289988-3290007 | Msa1269940:CDS | 45.0% | |
| AAGACACACCTAAGAACGCA+AGG | + | chr8_3:3289999-3290018 | None:intergenic | 45.0% | |
| AAGCTACGTAACTACTTGCG+TGG | + | chr8_3:3290102-3290121 | None:intergenic | 45.0% | |
| GCGTCATTATGGATCGTAGT+TGG | - | chr8_3:3290222-3290241 | Msa1269940:intron | 45.0% | |
| TGGAGGGACATTGACATGAA+CGG | - | chr8_3:3290501-3290520 | Msa1269940:intron | 45.0% | |
| GAGTTCCATGTGATGCAGTT+TGG | - | chr8_3:3290656-3290675 | Msa1269940:CDS | 45.0% | |
| GGGGGACTTTGAACATTCAA+GGG | + | chr8_3:3290797-3290816 | None:intergenic | 45.0% | |
| TGGGGGACTTTGAACATTCA+AGG | + | chr8_3:3290798-3290817 | None:intergenic | 45.0% | |
| AAAATGCTTCAAGGCAGTGG+GGG | + | chr8_3:3290815-3290834 | None:intergenic | 45.0% | |
| GAGTGAGTGCAGTAGACAAT+AGG | - | chr8_3:3290894-3290913 | Msa1269940:intron | 45.0% | |
| !! | TTAAAAAAAAGTAATATTAT+GGG | + | chr8_3:3286478-3286497 | None:intergenic | 5.0% |
| !! | ATTAAAAAAAAGTAATATTA+TGG | + | chr8_3:3286479-3286498 | None:intergenic | 5.0% |
| !! | ATATATATTTATTAAAGTTA+TGG | - | chr8_3:3288373-3288392 | Msa1269940:intron | 5.0% |
| !! | GGTGAGCTTTGGAGGTTTCA+CGG | + | chr8_3:3285982-3286001 | None:intergenic | 50.0% |
| ! | TGAGCTTTGACGGTGAGCTT+TGG | + | chr8_3:3285993-3286012 | None:intergenic | 50.0% |
| ! | GCTTTGACGGTGAGCTTTGA+CGG | + | chr8_3:3286003-3286022 | None:intergenic | 50.0% |
| GGAGATTCACGATTGGAGCT+TGG | + | chr8_3:3286033-3286052 | None:intergenic | 50.0% | |
| TTGAACTTGGACGGTGAGGT+TGG | + | chr8_3:3286054-3286073 | None:intergenic | 50.0% | |
| CTGATTGAACTTGGACGGTG+AGG | + | chr8_3:3286058-3286077 | None:intergenic | 50.0% | |
| CACCGTCCAAGTTCAATCAG+TGG | - | chr8_3:3286058-3286077 | Msa1269940:three_prime_UTR | 50.0% | |
| AGAGAGAGAGAGCTTACCAG+AGG | + | chr8_3:3286087-3286106 | None:intergenic | 50.0% | |
| ! | TCAATCAGTGATGGAGAGGG+TGG | - | chr8_3:3286177-3286196 | Msa1269940:three_prime_UTR | 50.0% |
| GAGCGATGTAGCAACGGTAA+GGG | + | chr8_3:3286241-3286260 | None:intergenic | 50.0% | |
| AGAGCGATGTAGCAACGGTA+AGG | + | chr8_3:3286242-3286261 | None:intergenic | 50.0% | |
| AGCTTGAAGAGACGTAGGAG+CGG | + | chr8_3:3286303-3286322 | None:intergenic | 50.0% | |
| ACAGGATTACACTGGTGCAG+AGG | - | chr8_3:3287329-3287348 | Msa1269940:three_prime_UTR | 50.0% | |
| TACACTGATCATGGAGGTCC+AGG | - | chr8_3:3287459-3287478 | Msa1269940:intron | 50.0% | |
| ACACTGATCATGGAGGTCCA+GGG | - | chr8_3:3287460-3287479 | Msa1269940:intron | 50.0% | |
| GTCTCTTCAGGTATGCCTGT+TGG | - | chr8_3:3288015-3288034 | Msa1269940:intron | 50.0% | |
| !! | GCAGATGTGTGTTGCTTGTG+TGG | - | chr8_3:3289926-3289945 | Msa1269940:intron | 50.0% |
| CTACGTAACTACTTGCGTGG+AGG | + | chr8_3:3290099-3290118 | None:intergenic | 50.0% | |
| GGATGAGAGCCAATCGTAGT+TGG | - | chr8_3:3290243-3290262 | Msa1269940:intron | 50.0% | |
| CAGTCCCAAACTGCATCACA+TGG | + | chr8_3:3290664-3290683 | None:intergenic | 50.0% | |
| ! | CATGTGATGCAGTTTGGGAC+TGG | - | chr8_3:3290662-3290681 | Msa1269940:CDS | 50.0% |
| ! | GACTGGTGGAAAGTACAGCT+TGG | - | chr8_3:3290679-3290698 | Msa1269940:CDS | 50.0% |
| GATCAGAAATGGTGTGCCCA+TGG | - | chr8_3:3290761-3290780 | Msa1269940:CDS | 50.0% | |
| ! | GCTTTGACGGTGAGCTTTGG+AGG | + | chr8_3:3285990-3286009 | None:intergenic | 55.0% |
| ! | GCTTGGACGGTGAGCTTTGA+CGG | + | chr8_3:3286016-3286035 | None:intergenic | 55.0% |
| ! | GTGATGGAGAGGGTGGAATC+TGG | - | chr8_3:3286184-3286203 | Msa1269940:three_prime_UTR | 55.0% |
| TCAGCTCTTACAGGTGGGAG+TGG | - | chr8_3:3287393-3287412 | Msa1269940:intron | 55.0% | |
| CAGCTCTTACAGGTGGGAGT+GGG | - | chr8_3:3287394-3287413 | Msa1269940:intron | 55.0% | |
| AGGTGGGAGTGGGAAAGTTG+TGG | - | chr8_3:3287404-3287423 | Msa1269940:intron | 55.0% | |
| CACTGATCATGGAGGTCCAG+GGG | - | chr8_3:3287461-3287480 | Msa1269940:intron | 55.0% | |
| ! | GTGATGCAGTTTGGGACTGG+TGG | - | chr8_3:3290665-3290684 | Msa1269940:CDS | 55.0% |
| CAGAAATGGTGTGCCCATGG+CGG | - | chr8_3:3290764-3290783 | Msa1269940:CDS | 55.0% | |
| CATGGAGGTCCAGGGGTTCT+TGG | - | chr8_3:3287468-3287487 | Msa1269940:intron | 60.0% | |
| TTGTGCCTGTCCGCTGCTAC+CGG | - | chr8_3:3289882-3289901 | Msa1269940:intron | 60.0% | |
| CTACCAAAGCCCGGTAGCAG+CGG | + | chr8_3:3289895-3289914 | None:intergenic | 60.0% | |
| GTGGGGGCTCTCTCCTGATA+TGG | - | chr8_3:3290733-3290752 | Msa1269940:CDS | 60.0% | |
| TGTGCCTGTCCGCTGCTACC+GGG | - | chr8_3:3289883-3289902 | Msa1269940:intron | 65.0% | |
| AAAGCCCGGTAGCAGCGGAC+AGG | + | chr8_3:3289890-3289909 | None:intergenic | 65.0% | |
| TGTCCGCTGCTACCGGGCTT+TGG | - | chr8_3:3289889-3289908 | Msa1269940:intron | 65.0% | |
| ATGGTGTGCCCATGGCGGCA+AGG | - | chr8_3:3290769-3290788 | Msa1269940:CDS | 65.0% | |
| CAAGGGAGCCTTGCCGCCAT+GGG | + | chr8_3:3290780-3290799 | None:intergenic | 65.0% | |
| TCAAGGGAGCCTTGCCGCCA+TGG | + | chr8_3:3290781-3290800 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 3285968 | 3291068 | 3285968 | ID=Msa1269940;Name=Msa1269940 |
| chr8_3 | mRNA | 3285968 | 3291068 | 3285968 | ID=Msa1269940-mRNA-1;Parent=Msa1269940;Name=Msa1269940-mRNA-1;_AED=0.25;_eAED=0.30;_QI=0|0.42|0.37|1|0.28|0.25|8|673|240 |
| chr8_3 | exon | 3285968 | 3286552 | 3285968 | ID=Msa1269940-mRNA-1:exon:1085;Parent=Msa1269940-mRNA-1 |
| chr8_3 | exon | 3287288 | 3287397 | 3287288 | ID=Msa1269940-mRNA-1:exon:1084;Parent=Msa1269940-mRNA-1 |
| chr8_3 | exon | 3287545 | 3287615 | 3287545 | ID=Msa1269940-mRNA-1:exon:1083;Parent=Msa1269940-mRNA-1 |
| chr8_3 | exon | 3288926 | 3289011 | 3288926 | ID=Msa1269940-mRNA-1:exon:1082;Parent=Msa1269940-mRNA-1 |
| chr8_3 | exon | 3289547 | 3289630 | 3289547 | ID=Msa1269940-mRNA-1:exon:1081;Parent=Msa1269940-mRNA-1 |
| chr8_3 | exon | 3289948 | 3290086 | 3289948 | ID=Msa1269940-mRNA-1:exon:1080;Parent=Msa1269940-mRNA-1 |
| chr8_3 | exon | 3290635 | 3290843 | 3290635 | ID=Msa1269940-mRNA-1:exon:1079;Parent=Msa1269940-mRNA-1 |
| chr8_3 | exon | 3290957 | 3291068 | 3290957 | ID=Msa1269940-mRNA-1:exon:1078;Parent=Msa1269940-mRNA-1 |
| chr8_3 | CDS | 3290957 | 3291068 | 3290957 | ID=Msa1269940-mRNA-1:cds;Parent=Msa1269940-mRNA-1 |
| chr8_3 | CDS | 3290635 | 3290843 | 3290635 | ID=Msa1269940-mRNA-1:cds;Parent=Msa1269940-mRNA-1 |
| chr8_3 | CDS | 3289948 | 3290086 | 3289948 | ID=Msa1269940-mRNA-1:cds;Parent=Msa1269940-mRNA-1 |
| chr8_3 | CDS | 3289547 | 3289630 | 3289547 | ID=Msa1269940-mRNA-1:cds;Parent=Msa1269940-mRNA-1 |
| chr8_3 | CDS | 3288926 | 3289011 | 3288926 | ID=Msa1269940-mRNA-1:cds;Parent=Msa1269940-mRNA-1 |
| chr8_3 | CDS | 3287545 | 3287615 | 3287545 | ID=Msa1269940-mRNA-1:cds;Parent=Msa1269940-mRNA-1 |
| chr8_3 | CDS | 3287376 | 3287397 | 3287376 | ID=Msa1269940-mRNA-1:cds;Parent=Msa1269940-mRNA-1 |
| chr8_3 | three_prime_UTR | 3287288 | 3287375 | 3287288 | ID=Msa1269940-mRNA-1:three_prime_utr;Parent=Msa1269940-mRNA-1 |
| chr8_3 | three_prime_UTR | 3285968 | 3286552 | 3285968 | ID=Msa1269940-mRNA-1:three_prime_utr;Parent=Msa1269940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
