Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0695450 | XP_013457002.1 | 100.000 | 248 | 0 | 0 | 1 | 248 | 1 | 248 | 5.63e-179 | 501 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0695450 | sp|Q9M3V8|RS6_ASPOF | 92.975 | 242 | 17 | 0 | 1 | 242 | 1 | 242 | 1.08e-165 | 461 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0695450 | I3S1W3 | 100.000 | 248 | 0 | 0 | 1 | 248 | 1 | 248 | 2.69e-179 | 501 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0695450 | Msa1039520 | 0.855707 | 5.267662e-62 | -8.615850e-47 |
| Msa0695450 | Msa1299590 | 0.817226 | 3.679871e-52 | -8.615850e-47 |
| Msa0202020 | Msa0695450 | 0.808518 | 2.977003e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0695450 | MtrunA17_Chr4g0047021 | 100.000 | 248 | 0 | 0 | 1 | 248 | 1 | 248 | 0.0 | 501 |
| Msa0695450 | MtrunA17_Chr7g0234621 | 96.774 | 248 | 8 | 0 | 1 | 248 | 1 | 248 | 3.67e-177 | 486 |
| Msa0695450 | MtrunA17_Chr2g0282411 | 96.774 | 248 | 8 | 0 | 1 | 248 | 1 | 248 | 1.60e-176 | 485 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0695450 | AT5G10360.1 | 91.968 | 249 | 18 | 1 | 1 | 247 | 1 | 249 | 7.72e-165 | 456 |
| Msa0695450 | AT4G31700.1 | 91.600 | 250 | 19 | 1 | 1 | 248 | 1 | 250 | 1.39e-157 | 437 |
| Msa0695450 | AT5G10360.2 | 73.896 | 249 | 11 | 2 | 1 | 247 | 1 | 197 | 4.26e-120 | 340 |
| Msa0695450 | AT4G31700.2 | 90.957 | 188 | 15 | 1 | 63 | 248 | 1 | 188 | 2.69e-109 | 313 |
Find 100 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATATTGCAGCCGTGCTTTC+TGG | 0.027256 | 4_4:-64988640 | Msa0695450:intron |
| TTATCAATTTGATGTTATTT+TGG | 0.155467 | 4_4:-64986741 | Msa0695450:three_prime_UTR |
| TTGCTCTCTGCAGGAGTTTA+AGG | 0.158668 | 4_4:-64988490 | Msa0695450:intron |
| GTTGAACAGCTTACGGATTT+TGG | 0.198177 | 4_4:+64987644 | None:intergenic |
| TTAATCATCGCAACTTATAA+TGG | 0.258242 | 4_4:+64986690 | None:intergenic |
| CAATTCTTGCTCGCTTCCTT+TGG | 0.278075 | 4_4:+64987109 | None:intergenic |
| GTGACCAATCGTTGTATCTT+TGG | 0.296066 | 4_4:+64987144 | None:intergenic |
| GGAAGTTCTTGGTGATGCTT+TGG | 0.339745 | 4_4:-64988600 | Msa0695450:CDS |
| TGAGATTTCATTTGAATTGA+AGG | 0.342708 | 4_4:-64986783 | Msa0695450:three_prime_UTR |
| ATATTGCAGCCGTGCTTTCT+GGG | 0.350681 | 4_4:-64988639 | Msa0695450:intron |
| TTCCCTCTGCTCCTTCAATC+TGG | 0.366847 | 4_4:+64987020 | None:intergenic |
| CTCTTAGGACCTCTCATCCT+TGG | 0.367925 | 4_4:+64987672 | None:intergenic |
| AAAGGTGATAATGATCTTCC+AGG | 0.375447 | 4_4:-64987714 | Msa0695450:CDS |
| GACGCAATGGAGAGCGTAGA+AGG | 0.381140 | 4_4:-64987800 | Msa0695450:CDS |
| GTCAACACTCCCTGCTTCAT+TGG | 0.384872 | 4_4:+64988423 | None:intergenic |
| TGTTGACCCCTGGCCGTGTT+AGG | 0.390290 | 4_4:-64988407 | Msa0695450:CDS |
| TGCTCTCTGCAGGAGTTTAA+GGG | 0.392051 | 4_4:-64988489 | Msa0695450:intron |
| GATAGTTAGTTTGTTAAAAG+TGG | 0.400235 | 4_4:-64986567 | Msa0695450:three_prime_UTR |
| CACAAGAGAGTTTCCGCGGC+TGG | 0.413641 | 4_4:-64989483 | Msa0695450:five_prime_UTR |
| AGGATCTCACAGGAAGTTCT+TGG | 0.420484 | 4_4:-64988611 | Msa0695450:CDS |
| GAAGTTCTTGGTGATGCTTT+GGG | 0.420593 | 4_4:-64988599 | Msa0695450:CDS |
| ACTCCTTGCTTCCAGATTGA+AGG | 0.422012 | 4_4:-64987031 | Msa0695450:CDS |
| TGGCTTAGCACTGGATAGTC+TGG | 0.428627 | 4_4:+64986966 | None:intergenic |
| TTCTTGCTCGCTTCCTTTGG+AGG | 0.436168 | 4_4:+64987112 | None:intergenic |
| CGCTTCCTTTGGAGGGTCAA+AGG | 0.448439 | 4_4:+64987120 | None:intergenic |
| TCAACACTCCCTGCTTCATT+GGG | 0.455023 | 4_4:+64988424 | None:intergenic |
| CTGACATCCAGTGGTTGGAT+TGG | 0.459762 | 4_4:+64989329 | None:intergenic |
| TTGTTTGATTGCAGGGAAGA+AGG | 0.460053 | 4_4:-64987178 | Msa0695450:intron |
| TTGACAGGTTGAACAGCTTA+CGG | 0.462619 | 4_4:+64987637 | None:intergenic |
| AGCAAGAGCCTAACACGGCC+AGG | 0.463109 | 4_4:+64988399 | None:intergenic |
| TGCGATGATTAACAATGGAC+AGG | 0.470825 | 4_4:-64986679 | Msa0695450:three_prime_UTR |
| ACAAGGATTCCCAATGAAGC+AGG | 0.478682 | 4_4:-64988433 | Msa0695450:CDS |
| GCAGCTTACAGCTAGAGATA+TGG | 0.481546 | 4_4:-64986928 | Msa0695450:three_prime_UTR |
| TTCTTCTGACATCCAGTGGT+TGG | 0.481727 | 4_4:+64989324 | None:intergenic |
| AAGTTCAAAACAGAGAGGTC+GGG | 0.481755 | 4_4:+64987750 | None:intergenic |
| GCTGCTTATGCTGTGGCAGA+TGG | 0.483327 | 4_4:+64986946 | None:intergenic |
| GCACATCATCATCCTTTGAC+AGG | 0.490483 | 4_4:+64987622 | None:intergenic |
| AACTTGGTTATTGTGAAGAA+AGG | 0.498754 | 4_4:-64987732 | Msa0695450:CDS |
| AATCAGAAACTTACCATCCT+TGG | 0.507683 | 4_4:+64987563 | None:intergenic |
| AACGTTGCCAATCCAACCAC+TGG | 0.507932 | 4_4:-64989336 | Msa0695450:CDS |
| TCTTGCTCGCTTCCTTTGGA+GGG | 0.509236 | 4_4:+64987113 | None:intergenic |
| TGGACAGGTTTAGCTTGTAA+AGG | 0.512689 | 4_4:-64986664 | Msa0695450:three_prime_UTR |
| TTGAAAACAAACCTTCATGT+TGG | 0.522210 | 4_4:+64989443 | None:intergenic |
| TCATTAGTCTTGTTCCATGA+GGG | 0.522530 | 4_4:-64986880 | Msa0695450:three_prime_UTR |
| GCAAGAGCCTAACACGGCCA+GGG | 0.526221 | 4_4:+64988400 | None:intergenic |
| GGTTATGTCTTCAAGATCAC+TGG | 0.529877 | 4_4:-64988468 | Msa0695450:CDS |
| AAGCTTCTTCTGACATCCAG+TGG | 0.530433 | 4_4:+64989320 | None:intergenic |
| GTTTATCATTAACACCCTCA+TGG | 0.538364 | 4_4:+64986866 | None:intergenic |
| TATGTCTTCAAGATCACTGG+TGG | 0.541337 | 4_4:-64988465 | Msa0695450:CDS |
| TTCATTAGTCTTGTTCCATG+AGG | 0.544368 | 4_4:-64986881 | Msa0695450:three_prime_UTR |
| AAGCAGGGAGTGTTGACCCC+TGG | 0.544754 | 4_4:-64988417 | Msa0695450:CDS |
| TTCTCAACATCAGTAAGCCC+TGG | 0.548857 | 4_4:+64987696 | None:intergenic |
| GCCGTGCTTTCTGGGACAAG+AGG | 0.553103 | 4_4:-64988631 | Msa0695450:CDS |
| CAAGTTCAAAACAGAGAGGT+CGG | 0.553854 | 4_4:+64987749 | None:intergenic |
| GGAACGCCGAAGTGAGAGCT+TGG | 0.554466 | 4_4:-64987001 | Msa0695450:CDS |
| CTTCCGTGTCCACGGAAACA+AGG | 0.556351 | 4_4:+64987822 | None:intergenic |
| GCAGGAACTCCTTGTTTCCG+TGG | 0.557291 | 4_4:-64987831 | Msa0695450:intron |
| CAGAAACTTACCATCCTTGG+TGG | 0.557776 | 4_4:+64987566 | None:intergenic |
| CAAGAAGAAGAGAATTGCTA+AGG | 0.559648 | 4_4:-64987082 | Msa0695450:CDS |
| TCCTCTTGTCCCAGAAAGCA+CGG | 0.564472 | 4_4:+64988630 | None:intergenic |
| AGGACGAGATTCCAACATGA+AGG | 0.566551 | 4_4:-64989454 | Msa0695450:intron |
| TAAAGGAATAAGTCAGCTGT+AGG | 0.569337 | 4_4:-64986647 | Msa0695450:three_prime_UTR |
| ACTCCTTGTTTCCGTGGACA+CGG | 0.569669 | 4_4:-64987825 | Msa0695450:CDS |
| AGCTCCAAAGATACAACGAT+TGG | 0.570130 | 4_4:-64987148 | Msa0695450:CDS |
| TCACTCCTTTGACCCTCCAA+AGG | 0.572684 | 4_4:-64987125 | Msa0695450:CDS |
| CGTAGAAGGAAGTCTGTTCG+TGG | 0.573391 | 4_4:-64987786 | Msa0695450:CDS |
| GCTCCTTCAATCTGGAAGCA+AGG | 0.577913 | 4_4:+64987028 | None:intergenic |
| CCTTGGTGGTGAAAGTTCTA+CGG | 0.579080 | 4_4:+64987580 | None:intergenic |
| CATCGCAACTTATAATGGAA+AGG | 0.579252 | 4_4:+64986695 | None:intergenic |
| TTCCAGATTGAAGGAGCAGA+GGG | 0.584168 | 4_4:-64987022 | Msa0695450:CDS |
| AGAACTTTCACCACCAAGGA+TGG | 0.589936 | 4_4:-64987576 | Msa0695450:intron |
| CATTGCGTCTTCCGTGTCCA+CGG | 0.591891 | 4_4:+64987814 | None:intergenic |
| CTGGGACAAGAGGATCTCAC+AGG | 0.592723 | 4_4:-64988621 | Msa0695450:CDS |
| TAAGCTGTTCAACCTGTCAA+AGG | 0.594543 | 4_4:-64987634 | Msa0695450:CDS |
| AGTTCAAAACAGAGAGGTCG+GGG | 0.595017 | 4_4:+64987751 | None:intergenic |
| CGTGGACACGGAAGACGCAA+TGG | 0.595810 | 4_4:-64987813 | Msa0695450:CDS |
| TTACTGATGTTGAGAAGCCA+AGG | 0.596042 | 4_4:-64987689 | Msa0695450:CDS |
| GTTGAGAAGCCAAGGATGAG+AGG | 0.601224 | 4_4:-64987681 | Msa0695450:CDS |
| TGTGGCAGATGGCTTAGCAC+TGG | 0.603451 | 4_4:+64986957 | None:intergenic |
| GTTTCCGCGGCTGGATCAAG+AGG | 0.604884 | 4_4:-64989474 | Msa0695450:five_prime_UTR |
| AAGGTGATAATGATCTTCCA+GGG | 0.607328 | 4_4:-64987713 | Msa0695450:CDS |
| GTTAGGCTCTTGCTCCATAG+AGG | 0.608724 | 4_4:-64988390 | Msa0695450:intron |
| TCTTAGCCAAGCTCTCACTT+CGG | 0.610174 | 4_4:+64986995 | None:intergenic |
| GTGAGAGCTTGGCTAAGAAG+AGG | 0.611225 | 4_4:-64986990 | Msa0695450:CDS |
| TAAGTTGCGATGATTAACAA+TGG | 0.615214 | 4_4:-64986684 | Msa0695450:three_prime_UTR |
| CAAGAGCCTAACACGGCCAG+GGG | 0.618346 | 4_4:+64988401 | None:intergenic |
| CTTCCAGATTGAAGGAGCAG+AGG | 0.620391 | 4_4:-64987023 | Msa0695450:CDS |
| ATGTCTTCAAGATCACTGGT+GGG | 0.622519 | 4_4:-64988464 | Msa0695450:CDS |
| GTGTGCGGCTTCAGCAACAA+TGG | 0.626284 | 4_4:+64989503 | None:intergenic |
| AATTGCTAAGGCAAAATCAG+AGG | 0.627856 | 4_4:-64987070 | Msa0695450:CDS |
| GGTGGTGAAAGTTCTACGGT+AGG | 0.627958 | 4_4:+64987584 | None:intergenic |
| CAAGGATTCCCAATGAAGCA+GGG | 0.635106 | 4_4:-64988432 | Msa0695450:CDS |
| ACTGGTGGGTGTGACAAACA+AGG | 0.636404 | 4_4:-64988450 | Msa0695450:CDS |
| CGCGGAAACTCTCTTGTGTG+CGG | 0.645005 | 4_4:+64989488 | None:intergenic |
| CGCACACAAGAGAGTTTCCG+CGG | 0.651647 | 4_4:-64989487 | Msa0695450:five_prime_UTR |
| GCTGTAAGCTGCTTATGCTG+TGG | 0.655143 | 4_4:+64986939 | None:intergenic |
| TCGTCCTCTTGATCCAGCCG+CGG | 0.656441 | 4_4:+64989470 | None:intergenic |
| CCGTAGAACTTTCACCACCA+AGG | 0.691015 | 4_4:-64987580 | Msa0695450:CDS |
| TATGGAGCAAGAGCCTAACA+CGG | 0.710814 | 4_4:+64988394 | None:intergenic |
| TAACCAAGTTCAAAACAGAG+AGG | 0.738467 | 4_4:+64987745 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATATATCCTTATATTAA+GGG | - | chr4_4:64988544-64988563 | Msa0695450:intron | 10.0% |
| !!! | TTTTTGAAATAATAAATGTT+AGG | - | chr4_4:64989473-64989492 | Msa0695450:five_prime_UTR | 10.0% |
| !! | TATAAGGATATATAAAGAAA+TGG | + | chr4_4:64988540-64988559 | None:intergenic | 15.0% |
| !! | CTTTATATATCCTTATATTA+AGG | - | chr4_4:64988543-64988562 | Msa0695450:intron | 15.0% |
| !!! | TTATCAATTTGATGTTATTT+TGG | - | chr4_4:64989321-64989340 | Msa0695450:CDS | 15.0% |
| !!! | TCATTTGAAGTATTTTTCTT+AGG | - | chr4_4:64986826-64986845 | Msa0695450:three_prime_UTR | 20.0% |
| !! | CAGAAAATTGAAAAGAATTT+CGG | + | chr4_4:64986920-64986939 | None:intergenic | 20.0% |
| !! | TAGCTTATGAAAATAGTTTA+TGG | - | chr4_4:64987174-64987193 | Msa0695450:intron | 20.0% |
| !!! | TTAAGTTGTTTATCAAAACA+AGG | - | chr4_4:64987307-64987326 | Msa0695450:intron | 20.0% |
| !!! | TTTTTGTGAAGTTATTTATG+TGG | - | chr4_4:64987370-64987389 | Msa0695450:intron | 20.0% |
| !! | TAAATAGATTGAAGATTTGA+AGG | + | chr4_4:64987712-64987731 | None:intergenic | 20.0% |
| !! | ACATGAGATAAATAGTAAAA+TGG | + | chr4_4:64987840-64987859 | None:intergenic | 20.0% |
| !! | AAGAATATTACTTTCATTGA+AGG | - | chr4_4:64988704-64988723 | Msa0695450:intron | 20.0% |
| !!! | ACAATATGTTTTGATATGCA+TGG | - | chr4_4:64987002-64987021 | Msa0695450:CDS | 25.0% |
| !! | CATTGTCATTTATCTGAATT+TGG | - | chr4_4:64987034-64987053 | Msa0695450:CDS | 25.0% |
| !!! | ATTTGGTTTGAACTGATATT+TGG | - | chr4_4:64987051-64987070 | Msa0695450:CDS | 25.0% |
| !! | ACTATTTTCATAAGCTATCT+TGG | + | chr4_4:64987171-64987190 | None:intergenic | 25.0% |
| !!! | TTTATTTTATCGTGTGTAGT+AGG | - | chr4_4:64987219-64987238 | Msa0695450:intron | 25.0% |
| ! | TTACAATGCTCTACAAAATA+AGG | + | chr4_4:64987529-64987548 | None:intergenic | 25.0% |
| ! | AAAAAAAAATGCTACCTCTA+TGG | + | chr4_4:64987689-64987708 | None:intergenic | 25.0% |
| ! | TCTTCAATCTATTTACCTTT+CGG | - | chr4_4:64987717-64987736 | Msa0695450:CDS | 25.0% |
| ! | CGTTCATAAATTTATAGTAG+TGG | - | chr4_4:64987791-64987810 | Msa0695450:CDS | 25.0% |
| ! | TCATAAATTTATAGTAGTGG+AGG | - | chr4_4:64987794-64987813 | Msa0695450:CDS | 25.0% |
| ! | GTTATCTCTAATATTACATG+TGG | + | chr4_4:64987922-64987941 | None:intergenic | 25.0% |
| !! | AGTTCTTTTCATAAAGTTAG+TGG | + | chr4_4:64987970-64987989 | None:intergenic | 25.0% |
| ! | ACATCCAAAACTATTTAACT+AGG | + | chr4_4:64988002-64988021 | None:intergenic | 25.0% |
| !!! | TTAAATAGTTTTGGATGTGT+GGG | - | chr4_4:64988004-64988023 | Msa0695450:intron | 25.0% |
| ! | AACAATAATCATTGTGATCA+TGG | + | chr4_4:64988108-64988127 | None:intergenic | 25.0% |
| ! | GCAAATAATGAAATACTAAG+TGG | + | chr4_4:64988167-64988186 | None:intergenic | 25.0% |
| ! | CTTAGTATTTCATTATTTGC+AGG | - | chr4_4:64988167-64988186 | Msa0695450:intron | 25.0% |
| !!! | TAATTTTTTATGCACTTTGC+AGG | - | chr4_4:64988213-64988232 | Msa0695450:intron | 25.0% |
| ! | AGAACAAAAATGAATACAAG+TGG | + | chr4_4:64988646-64988665 | None:intergenic | 25.0% |
| ! | TTCATTACAAATGTCTGTAT+TGG | + | chr4_4:64988846-64988865 | None:intergenic | 25.0% |
| ! | GTAATGAATTGTAATCTTAG+TGG | - | chr4_4:64988858-64988877 | Msa0695450:intron | 25.0% |
| ! | TGAGATTTCATTTGAATTGA+AGG | - | chr4_4:64989279-64989298 | Msa0695450:intron | 25.0% |
| ! | TTAATCATCGCAACTTATAA+TGG | + | chr4_4:64989375-64989394 | None:intergenic | 25.0% |
| !!! | GATAGTTAGTTTGTTAAAAG+TGG | - | chr4_4:64989495-64989514 | Msa0695450:five_prime_UTR | 25.0% |
| TTGAAAACAAACCTTCATGT+TGG | + | chr4_4:64986622-64986641 | None:intergenic | 30.0% | |
| GAAAATGAAGAGAGAGTAAA+TGG | + | chr4_4:64986799-64986818 | None:intergenic | 30.0% | |
| CCAACATAGATTTATGAACA+TGG | + | chr4_4:64986876-64986895 | None:intergenic | 30.0% | |
| CCATGTTCATAAATCTATGT+TGG | - | chr4_4:64986873-64986892 | Msa0695450:three_prime_UTR | 30.0% | |
| ATATGACTGTAGTGTAAATC+TGG | - | chr4_4:64986970-64986989 | Msa0695450:CDS | 30.0% | |
| ! | TGTAGAAATAAGTTGGAAAC+AGG | + | chr4_4:64987142-64987161 | None:intergenic | 30.0% |
| GTGAACTTGTAGAAATAAGT+TGG | + | chr4_4:64987149-64987168 | None:intergenic | 30.0% | |
| TTGCCTCTTAGTATTACTAT+TGG | - | chr4_4:64987765-64987784 | Msa0695450:CDS | 30.0% | |
| TCTCCAATAGTAATACTAAG+AGG | + | chr4_4:64987771-64987790 | None:intergenic | 30.0% | |
| ! | TATCTCATGTGATTTTGCAT+TGG | - | chr4_4:64987850-64987869 | Msa0695450:intron | 30.0% |
| ! | GTGATTTTGCATTGGATTAT+TGG | - | chr4_4:64987858-64987877 | Msa0695450:intron | 30.0% |
| ! | GCATATGTAGTTATTTCAGT+AGG | - | chr4_4:64987888-64987907 | Msa0695450:intron | 30.0% |
| CCAAAACTATTTAACTAGGA+GGG | + | chr4_4:64987998-64988017 | None:intergenic | 30.0% | |
| TCCAAAACTATTTAACTAGG+AGG | + | chr4_4:64987999-64988018 | None:intergenic | 30.0% | |
| !!! | GTTAAATAGTTTTGGATGTG+TGG | - | chr4_4:64988003-64988022 | Msa0695450:intron | 30.0% |
| AACTTGGTTATTGTGAAGAA+AGG | - | chr4_4:64988330-64988349 | Msa0695450:intron | 30.0% | |
| AGAAATGGTTACAATATTCG+TGG | + | chr4_4:64988525-64988544 | None:intergenic | 30.0% | |
| TATCCTTATATTAAGGGTAG+TGG | - | chr4_4:64988550-64988569 | Msa0695450:intron | 30.0% | |
| ATCCTTATATTAAGGGTAGT+GGG | - | chr4_4:64988551-64988570 | Msa0695450:intron | 30.0% | |
| ACAAAAATGAATACAAGTGG+AGG | + | chr4_4:64988643-64988662 | None:intergenic | 30.0% | |
| ACAGTATACATTGTCTAGAT+TGG | - | chr4_4:64988739-64988758 | Msa0695450:intron | 30.0% | |
| CAGTATACATTGTCTAGATT+GGG | - | chr4_4:64988740-64988759 | Msa0695450:intron | 30.0% | |
| AGTATACATTGTCTAGATTG+GGG | - | chr4_4:64988741-64988760 | Msa0695450:intron | 30.0% | |
| !! | CTGTATTGGTACAATTTTAC+CGG | + | chr4_4:64988832-64988851 | None:intergenic | 30.0% |
| !!! | TTGATGTTATTTTGGCACAA+TGG | - | chr4_4:64989329-64989348 | Msa0695450:CDS | 30.0% |
| TAAGTTGCGATGATTAACAA+TGG | - | chr4_4:64989378-64989397 | Msa0695450:intron | 30.0% | |
| CTAAACAATCCAATCCAAAC+AGG | + | chr4_4:64987079-64987098 | None:intergenic | 35.0% | |
| ! | CCCTCCTAGTTAAATAGTTT+TGG | - | chr4_4:64987995-64988014 | Msa0695450:intron | 35.0% |
| TGGGAAACATGCATATAGTA+TGG | - | chr4_4:64988023-64988042 | Msa0695450:intron | 35.0% | |
| AAAAAATCCATGCCATAGTG+AGG | - | chr4_4:64988048-64988067 | Msa0695450:intron | 35.0% | |
| AAAAATCCATGCCATAGTGA+GGG | - | chr4_4:64988049-64988068 | Msa0695450:intron | 35.0% | |
| ! | GAGTAAGCTTCTTTTCTACT+TGG | - | chr4_4:64988189-64988208 | Msa0695450:intron | 35.0% |
| TAACCAAGTTCAAAACAGAG+AGG | + | chr4_4:64988320-64988339 | None:intergenic | 35.0% | |
| ! | AAAGGTGATAATGATCTTCC+AGG | - | chr4_4:64988348-64988367 | Msa0695450:intron | 35.0% |
| ! | AAGGTGATAATGATCTTCCA+GGG | - | chr4_4:64988349-64988368 | Msa0695450:intron | 35.0% |
| AATCAGAAACTTACCATCCT+TGG | + | chr4_4:64988502-64988521 | None:intergenic | 35.0% | |
| TCCTTATATTAAGGGTAGTG+GGG | - | chr4_4:64988552-64988571 | Msa0695450:intron | 35.0% | |
| AAACAGTTGTCCAAACTACT+AGG | - | chr4_4:64988607-64988626 | Msa0695450:CDS | 35.0% | |
| AACAGTTGTCCAAACTACTA+GGG | - | chr4_4:64988608-64988627 | Msa0695450:CDS | 35.0% | |
| AAAACGGCACTTCTTTCAAA+CGG | + | chr4_4:64988777-64988796 | None:intergenic | 35.0% | |
| ATCGCAAATTGTGAGGAAAA+CGG | + | chr4_4:64988793-64988812 | None:intergenic | 35.0% | |
| CAAGAAGAAGAGAATTGCTA+AGG | - | chr4_4:64988980-64988999 | Msa0695450:intron | 35.0% | |
| AATTGCTAAGGCAAAATCAG+AGG | - | chr4_4:64988992-64989011 | Msa0695450:intron | 35.0% | |
| !! | TTCATTAGTCTTGTTCCATG+AGG | - | chr4_4:64989181-64989200 | Msa0695450:intron | 35.0% |
| !! | TCATTAGTCTTGTTCCATGA+GGG | - | chr4_4:64989182-64989201 | Msa0695450:intron | 35.0% |
| GTTTATCATTAACACCCTCA+TGG | + | chr4_4:64989199-64989218 | None:intergenic | 35.0% | |
| ! | CATCGCAACTTATAATGGAA+AGG | + | chr4_4:64989370-64989389 | None:intergenic | 35.0% |
| TAAAGGAATAAGTCAGCTGT+AGG | - | chr4_4:64989415-64989434 | Msa0695450:intron | 35.0% | |
| ! | ACTGATATTTGGAGCCTGTT+TGG | - | chr4_4:64987062-64987081 | Msa0695450:CDS | 40.0% |
| ! | TATTTGGAGCCTGTTTGGAT+TGG | - | chr4_4:64987067-64987086 | Msa0695450:CDS | 40.0% |
| !! | GAAGTTCTTGGTGATGCTTT+GGG | - | chr4_4:64987463-64987482 | Msa0695450:intron | 40.0% |
| GGTTATGTCTTCAAGATCAC+TGG | - | chr4_4:64987594-64987613 | Msa0695450:CDS | 40.0% | |
| TATGTCTTCAAGATCACTGG+TGG | - | chr4_4:64987597-64987616 | Msa0695450:CDS | 40.0% | |
| ATGTCTTCAAGATCACTGGT+GGG | - | chr4_4:64987598-64987617 | Msa0695450:CDS | 40.0% | |
| TAAAGTTAGTGGAGACGTTG+AGG | + | chr4_4:64987959-64987978 | None:intergenic | 40.0% | |
| AAGTTCAAAACAGAGAGGTC+GGG | + | chr4_4:64988315-64988334 | None:intergenic | 40.0% | |
| CAAGTTCAAAACAGAGAGGT+CGG | + | chr4_4:64988316-64988335 | None:intergenic | 40.0% | |
| TTACTGATGTTGAGAAGCCA+AGG | - | chr4_4:64988373-64988392 | Msa0695450:intron | 40.0% | |
| ! | GTTGAACAGCTTACGGATTT+TGG | + | chr4_4:64988421-64988440 | None:intergenic | 40.0% |
| ! | TTGACAGGTTGAACAGCTTA+CGG | + | chr4_4:64988428-64988447 | None:intergenic | 40.0% |
| TAAGCTGTTCAACCTGTCAA+AGG | - | chr4_4:64988428-64988447 | Msa0695450:CDS | 40.0% | |
| ! | CCTTATATTAAGGGTAGTGG+GGG | - | chr4_4:64988553-64988572 | Msa0695450:intron | 40.0% |
| ACAGTTGTCCAAACTACTAG+GGG | - | chr4_4:64988609-64988628 | Msa0695450:CDS | 40.0% | |
| AAACGGCACTTCTTTCAAAC+GGG | + | chr4_4:64988776-64988795 | None:intergenic | 40.0% | |
| AAGGACAATCGCAAATTGTG+AGG | + | chr4_4:64988800-64988819 | None:intergenic | 40.0% | |
| ! | ATTTTACCGGATGTCACTGA+AGG | + | chr4_4:64988819-64988838 | None:intergenic | 40.0% |
| !! | AGTGGTTGTTGTTTGATTGC+AGG | - | chr4_4:64988876-64988895 | Msa0695450:intron | 40.0% |
| !! | GTGGTTGTTGTTTGATTGCA+GGG | - | chr4_4:64988877-64988896 | Msa0695450:intron | 40.0% |
| TTGTTTGATTGCAGGGAAGA+AGG | - | chr4_4:64988884-64988903 | Msa0695450:intron | 40.0% | |
| AGCTCCAAAGATACAACGAT+TGG | - | chr4_4:64988914-64988933 | Msa0695450:intron | 40.0% | |
| GTGACCAATCGTTGTATCTT+TGG | + | chr4_4:64988921-64988940 | None:intergenic | 40.0% | |
| TGCGATGATTAACAATGGAC+AGG | - | chr4_4:64989383-64989402 | Msa0695450:intron | 40.0% | |
| !! | TGGACAGGTTTAGCTTGTAA+AGG | - | chr4_4:64989398-64989417 | Msa0695450:intron | 40.0% |
| AGGACGAGATTCCAACATGA+AGG | - | chr4_4:64986608-64986627 | Msa0695450:three_prime_UTR | 45.0% | |
| TTCTTCTGACATCCAGTGGT+TGG | + | chr4_4:64986741-64986760 | None:intergenic | 45.0% | |
| AAGCTTCTTCTGACATCCAG+TGG | + | chr4_4:64986745-64986764 | None:intergenic | 45.0% | |
| TATATTGCAGCCGTGCTTTC+TGG | - | chr4_4:64987422-64987441 | Msa0695450:intron | 45.0% | |
| ATATTGCAGCCGTGCTTTCT+GGG | - | chr4_4:64987423-64987442 | Msa0695450:intron | 45.0% | |
| AGGATCTCACAGGAAGTTCT+TGG | - | chr4_4:64987451-64987470 | Msa0695450:intron | 45.0% | |
| !! | GGAAGTTCTTGGTGATGCTT+TGG | - | chr4_4:64987462-64987481 | Msa0695450:intron | 45.0% |
| ! | GTTGTGATTTTGCTCTCTGC+AGG | - | chr4_4:64987563-64987582 | Msa0695450:intron | 45.0% |
| TTGCTCTCTGCAGGAGTTTA+AGG | - | chr4_4:64987572-64987591 | Msa0695450:intron | 45.0% | |
| TGCTCTCTGCAGGAGTTTAA+GGG | - | chr4_4:64987573-64987592 | Msa0695450:intron | 45.0% | |
| ACAAGGATTCCCAATGAAGC+AGG | - | chr4_4:64987629-64987648 | Msa0695450:CDS | 45.0% | |
| CAAGGATTCCCAATGAAGCA+GGG | - | chr4_4:64987630-64987649 | Msa0695450:CDS | 45.0% | |
| TCAACACTCCCTGCTTCATT+GGG | + | chr4_4:64987641-64987660 | None:intergenic | 45.0% | |
| TATGGAGCAAGAGCCTAACA+CGG | + | chr4_4:64987671-64987690 | None:intergenic | 45.0% | |
| GCAACATACAGTATGCCGAA+AGG | + | chr4_4:64987735-64987754 | None:intergenic | 45.0% | |
| ! | TGGAGACGTTGAGGTATTTG+TGG | + | chr4_4:64987950-64987969 | None:intergenic | 45.0% |
| AGTTCAAAACAGAGAGGTCG+GGG | + | chr4_4:64988314-64988333 | None:intergenic | 45.0% | |
| !! | CGACCTCTCTGTTTTGAACT+TGG | - | chr4_4:64988314-64988333 | Msa0695450:intron | 45.0% |
| TTCTCAACATCAGTAAGCCC+TGG | + | chr4_4:64988369-64988388 | None:intergenic | 45.0% | |
| ! | CGGATTTTGGATGCTCTCTT+AGG | + | chr4_4:64988408-64988427 | None:intergenic | 45.0% |
| GCACATCATCATCCTTTGAC+AGG | + | chr4_4:64988443-64988462 | None:intergenic | 45.0% | |
| !! | CCTTGGTGGTGAAAGTTCTA+CGG | + | chr4_4:64988485-64988504 | None:intergenic | 45.0% |
| AGAACTTTCACCACCAAGGA+TGG | - | chr4_4:64988486-64988505 | Msa0695450:intron | 45.0% | |
| CAGAAACTTACCATCCTTGG+TGG | + | chr4_4:64988499-64988518 | None:intergenic | 45.0% | |
| CCCCCACTACCCTTAATATA+AGG | + | chr4_4:64988556-64988575 | None:intergenic | 45.0% | |
| CTATGAAGCCCCTAGTAGTT+TGG | + | chr4_4:64988620-64988639 | None:intergenic | 45.0% | |
| GATTGTCCTTCAGTGACATC+CGG | - | chr4_4:64988810-64988829 | Msa0695450:intron | 45.0% | |
| CAATTCTTGCTCGCTTCCTT+TGG | + | chr4_4:64988956-64988975 | None:intergenic | 45.0% | |
| ACTCCTTGCTTCCAGATTGA+AGG | - | chr4_4:64989031-64989050 | Msa0695450:intron | 45.0% | |
| TTCCAGATTGAAGGAGCAGA+GGG | - | chr4_4:64989040-64989059 | Msa0695450:intron | 45.0% | |
| TCTTAGCCAAGCTCTCACTT+CGG | + | chr4_4:64989070-64989089 | None:intergenic | 45.0% | |
| GCAGCTTACAGCTAGAGATA+TGG | - | chr4_4:64989134-64989153 | Msa0695450:intron | 45.0% | |
| AACGTTGCCAATCCAACCAC+TGG | - | chr4_4:64986726-64986745 | Msa0695450:three_prime_UTR | 50.0% | |
| CTGACATCCAGTGGTTGGAT+TGG | + | chr4_4:64986736-64986755 | None:intergenic | 50.0% | |
| TCCTCTTGTCCCAGAAAGCA+CGG | + | chr4_4:64987435-64987454 | None:intergenic | 50.0% | |
| ! | ACTGGTGGGTGTGACAAACA+AGG | - | chr4_4:64987612-64987631 | Msa0695450:CDS | 50.0% |
| GTCAACACTCCCTGCTTCAT+TGG | + | chr4_4:64987642-64987661 | None:intergenic | 50.0% | |
| GTTAGGCTCTTGCTCCATAG+AGG | - | chr4_4:64987672-64987691 | Msa0695450:CDS | 50.0% | |
| TCATGGACAGCCCTACCTTA+GGG | + | chr4_4:64988091-64988110 | None:intergenic | 50.0% | |
| ATCATGGACAGCCCTACCTT+AGG | + | chr4_4:64988092-64988111 | None:intergenic | 50.0% | |
| ! | ACTCCTTGTTTCCGTGGACA+CGG | - | chr4_4:64988237-64988256 | Msa0695450:intron | 50.0% |
| CGTAGAAGGAAGTCTGTTCG+TGG | - | chr4_4:64988276-64988295 | Msa0695450:intron | 50.0% | |
| GTTGAGAAGCCAAGGATGAG+AGG | - | chr4_4:64988381-64988400 | Msa0695450:intron | 50.0% | |
| CTCTTAGGACCTCTCATCCT+TGG | + | chr4_4:64988393-64988412 | None:intergenic | 50.0% | |
| GGTGGTGAAAGTTCTACGGT+AGG | + | chr4_4:64988481-64988500 | None:intergenic | 50.0% | |
| CCGTAGAACTTTCACCACCA+AGG | - | chr4_4:64988482-64988501 | Msa0695450:intron | 50.0% | |
| TCACTCCTTTGACCCTCCAA+AGG | - | chr4_4:64988937-64988956 | Msa0695450:intron | 50.0% | |
| TCTTGCTCGCTTCCTTTGGA+GGG | + | chr4_4:64988952-64988971 | None:intergenic | 50.0% | |
| TTCTTGCTCGCTTCCTTTGG+AGG | + | chr4_4:64988953-64988972 | None:intergenic | 50.0% | |
| GCTCCTTCAATCTGGAAGCA+AGG | + | chr4_4:64989037-64989056 | None:intergenic | 50.0% | |
| CTTCCAGATTGAAGGAGCAG+AGG | - | chr4_4:64989039-64989058 | Msa0695450:intron | 50.0% | |
| TTCCCTCTGCTCCTTCAATC+TGG | + | chr4_4:64989045-64989064 | None:intergenic | 50.0% | |
| GTGAGAGCTTGGCTAAGAAG+AGG | - | chr4_4:64989072-64989091 | Msa0695450:intron | 50.0% | |
| ! | TGGCTTAGCACTGGATAGTC+TGG | + | chr4_4:64989099-64989118 | None:intergenic | 50.0% |
| GCTGTAAGCTGCTTATGCTG+TGG | + | chr4_4:64989126-64989145 | None:intergenic | 50.0% | |
| CGCGGAAACTCTCTTGTGTG+CGG | + | chr4_4:64986577-64986596 | None:intergenic | 55.0% | |
| CGCACACAAGAGAGTTTCCG+CGG | - | chr4_4:64986575-64986594 | Msa0695450:three_prime_UTR | 55.0% | |
| CTGGGACAAGAGGATCTCAC+AGG | - | chr4_4:64987441-64987460 | Msa0695450:intron | 55.0% | |
| CATGGACAGCCCTACCTTAG+GGG | + | chr4_4:64988090-64988109 | None:intergenic | 55.0% | |
| ! | GCAGGAACTCCTTGTTTCCG+TGG | - | chr4_4:64988231-64988250 | Msa0695450:intron | 55.0% |
| CTTCCGTGTCCACGGAAACA+AGG | + | chr4_4:64988243-64988262 | None:intergenic | 55.0% | |
| CATTGCGTCTTCCGTGTCCA+CGG | + | chr4_4:64988251-64988270 | None:intergenic | 55.0% | |
| ! | GACGCAATGGAGAGCGTAGA+AGG | - | chr4_4:64988262-64988281 | Msa0695450:intron | 55.0% |
| ! | CGCTTCCTTTGGAGGGTCAA+AGG | + | chr4_4:64988945-64988964 | None:intergenic | 55.0% |
| TGTGGCAGATGGCTTAGCAC+TGG | + | chr4_4:64989108-64989127 | None:intergenic | 55.0% | |
| GCTGCTTATGCTGTGGCAGA+TGG | + | chr4_4:64989119-64989138 | None:intergenic | 55.0% | |
| CACAAGAGAGTTTCCGCGGC+TGG | - | chr4_4:64986579-64986598 | Msa0695450:three_prime_UTR | 60.0% | |
| GTTTCCGCGGCTGGATCAAG+AGG | - | chr4_4:64986588-64986607 | Msa0695450:three_prime_UTR | 60.0% | |
| TCGTCCTCTTGATCCAGCCG+CGG | + | chr4_4:64986595-64986614 | None:intergenic | 60.0% | |
| !! | GCCGTGCTTTCTGGGACAAG+AGG | - | chr4_4:64987431-64987450 | Msa0695450:intron | 60.0% |
| !! | AAGCAGGGAGTGTTGACCCC+TGG | - | chr4_4:64987645-64987664 | Msa0695450:CDS | 60.0% |
| TGTTGACCCCTGGCCGTGTT+AGG | - | chr4_4:64987655-64987674 | Msa0695450:CDS | 60.0% | |
| CAAGAGCCTAACACGGCCAG+GGG | + | chr4_4:64987664-64987683 | None:intergenic | 60.0% | |
| GCAAGAGCCTAACACGGCCA+GGG | + | chr4_4:64987665-64987684 | None:intergenic | 60.0% | |
| AGCAAGAGCCTAACACGGCC+AGG | + | chr4_4:64987666-64987685 | None:intergenic | 60.0% | |
| CCTTGGCCCTCACTATGGCA+TGG | + | chr4_4:64988058-64988077 | None:intergenic | 60.0% | |
| CCATGCCATAGTGAGGGCCA+AGG | - | chr4_4:64988055-64988074 | Msa0695450:intron | 60.0% | |
| ! | CCCTACCTTAGGGGAGGTGT+GGG | + | chr4_4:64988081-64988100 | None:intergenic | 60.0% |
| CCCACACCTCCCCTAAGGTA+GGG | - | chr4_4:64988078-64988097 | Msa0695450:intron | 60.0% | |
| CGTGGACACGGAAGACGCAA+TGG | - | chr4_4:64988249-64988268 | Msa0695450:intron | 60.0% | |
| GGAACGCCGAAGTGAGAGCT+TGG | - | chr4_4:64989061-64989080 | Msa0695450:intron | 60.0% | |
| GTGGGCCTTGGCCCTCACTA+TGG | + | chr4_4:64988063-64988082 | None:intergenic | 65.0% | |
| ! | CTTAGGGGAGGTGTGGGCCT+TGG | + | chr4_4:64988075-64988094 | None:intergenic | 65.0% |
| CAAGGCCCACACCTCCCCTA+AGG | - | chr4_4:64988073-64988092 | Msa0695450:intron | 65.0% | |
| GCCCACACCTCCCCTAAGGT+AGG | - | chr4_4:64988077-64988096 | Msa0695450:intron | 65.0% | |
| GCCCTACCTTAGGGGAGGTG+TGG | + | chr4_4:64988082-64988101 | None:intergenic | 65.0% | |
| GGACAGCCCTACCTTAGGGG+AGG | + | chr4_4:64988087-64988106 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 64986561 | 64989523 | 64986561 | ID=Msa0695450;Name=Msa0695450 |
| chr4_4 | mRNA | 64986561 | 64989523 | 64986561 | ID=Msa0695450-mRNA-1;Parent=Msa0695450;Name=Msa0695450-mRNA-1;_AED=0.02;_eAED=0.02;_QI=63|1|1|1|1|1|6|390|248 |
| chr4_4 | exon | 64986561 | 64987186 | 64986561 | ID=Msa0695450-mRNA-1:exon:18686;Parent=Msa0695450-mRNA-1 |
| chr4_4 | exon | 64987577 | 64987849 | 64987577 | ID=Msa0695450-mRNA-1:exon:18685;Parent=Msa0695450-mRNA-1 |
| chr4_4 | exon | 64988391 | 64988499 | 64988391 | ID=Msa0695450-mRNA-1:exon:18684;Parent=Msa0695450-mRNA-1 |
| chr4_4 | exon | 64988595 | 64988652 | 64988595 | ID=Msa0695450-mRNA-1:exon:18683;Parent=Msa0695450-mRNA-1 |
| chr4_4 | exon | 64989297 | 64989361 | 64989297 | ID=Msa0695450-mRNA-1:exon:18682;Parent=Msa0695450-mRNA-1 |
| chr4_4 | exon | 64989455 | 64989523 | 64989455 | ID=Msa0695450-mRNA-1:exon:18681;Parent=Msa0695450-mRNA-1 |
| chr4_4 | five_prime_UTR | 64989461 | 64989523 | 64989461 | ID=Msa0695450-mRNA-1:five_prime_utr;Parent=Msa0695450-mRNA-1 |
| chr4_4 | CDS | 64989455 | 64989460 | 64989455 | ID=Msa0695450-mRNA-1:cds;Parent=Msa0695450-mRNA-1 |
| chr4_4 | CDS | 64989297 | 64989361 | 64989297 | ID=Msa0695450-mRNA-1:cds;Parent=Msa0695450-mRNA-1 |
| chr4_4 | CDS | 64988595 | 64988652 | 64988595 | ID=Msa0695450-mRNA-1:cds;Parent=Msa0695450-mRNA-1 |
| chr4_4 | CDS | 64988391 | 64988499 | 64988391 | ID=Msa0695450-mRNA-1:cds;Parent=Msa0695450-mRNA-1 |
| chr4_4 | CDS | 64987577 | 64987849 | 64987577 | ID=Msa0695450-mRNA-1:cds;Parent=Msa0695450-mRNA-1 |
| chr4_4 | CDS | 64986951 | 64987186 | 64986951 | ID=Msa0695450-mRNA-1:cds;Parent=Msa0695450-mRNA-1 |
| chr4_4 | three_prime_UTR | 64986561 | 64986950 | 64986561 | ID=Msa0695450-mRNA-1:three_prime_utr;Parent=Msa0695450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
