AlfalfaGEDB | Msa1299590

M. sativa cultivar zhongmu-4 / Msa1299590

KEGG: K02997
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006417 GO:0006450 GO:0008150 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0015935 GO:0016020 GO:0019222 GO:0019843 GO:0022626 GO:0022627 GO:0030054 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0032991 GO:0034248 GO:0034250 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045727 GO:0045903 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0055044 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1990904 GO:2000112
PFAM: PF00163.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1299590	XP_003598026.1	100.000	197	0	0	1	197	1	197	5.17e-142	404

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1299590	sp\|Q9FLF0\|RS92_ARATH	90.909	187	17	0	1	187	1	187	2.10e-123	349

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1299590	B7FMD4	100.000	197	0	0	1	197	1	197	2.47e-142	404

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002750	Msa1299590	0.832820	7.601065e-56	-8.615850e-47
Msa0002790	Msa1299590	0.842989	1.846418e-58	-8.615850e-47
Msa0032780	Msa1299590	0.820075	8.306088e-53	-8.615850e-47
Msa0044890	Msa1299590	0.823682	1.214421e-53	-8.615850e-47
Msa0045730	Msa1299590	0.802374	5.784194e-49	-8.615850e-47
Msa0048180	Msa1299590	0.819522	1.111081e-52	-8.615850e-47
Msa0068970	Msa1299590	0.817242	3.649232e-52	-8.615850e-47
Msa0074030	Msa1299590	0.851340	9.459517e-61	-8.615850e-47
Msa0086750	Msa1299590	0.865141	7.321816e-65	-8.615850e-47
Msa0100730	Msa1299590	0.812416	4.285653e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1299590	MtrunA17_Chr3g0077371	100.000	197	0	1	197	1	197	4.76e-146	404
Msa1299590	MtrunA17_Chr3g0077391	100.000	197	0	1	197	1	197	4.76e-146	404
Msa1299590	MtrunA17_Chr4g0009481	100.000	197	0	1	197	1	197	4.76e-146	404
Msa1299590	MtrunA17_Chr7g0241891	98.985	197	2	1	197	1	197	2.61e-144	399
Msa1299590	MtrunA17_Chr1g0182531	98.477	197	3	1	197	28	224	3.76e-143	397
Msa1299590	MtrunA17_Chr4g0060551	98.261	115	2	1	115	1	115	5.75e-79	231
Msa1299590	MtrunA17_Chr4g0009501	100.000	60	0	138	197	13	72	4.70e-38	126

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1299590	AT5G39850.1	90.909	187	17	0	1	187	1	187	2.13e-124	349
Msa1299590	AT5G15200.1	84.343	198	30	1	1	197	1	198	9.63e-118	332
Msa1299590	AT5G15200.2	89.051	137	15	0	1	137	1	137	4.16e-86	251

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Find 83 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCGTTCTAGCATTGTTA+CGG	0.481953	8_3:+60892263	None:intergenic
AAAGTTTCGGTTGGATACAT+GGG	0.591867	8_3:+60890353	None:intergenic
AACCTAGTAGGCATCACCGG+CGG	0.714986	8_3:-60892472	Msa1299590:five_prime_UTR
AACTATGCTTCTTATGGTGT+AGG	0.569156	8_3:-60890325	Msa1299590:three_prime_UTR
AACTTGTATAAAGATCAAGC+AGG	0.637230	8_3:+60890253	None:intergenic
AAGAACCCTAGCATGGTGAA+TGG	0.539163	8_3:+60892057	None:intergenic
AAGAAGGCTTCCGGTGGTGA+TGG	0.531981	8_3:-60890679	Msa1299590:CDS
AATAAACAAGGATGGGAAAA+TGG	0.279207	8_3:+60890546	None:intergenic
AATCCTCGTCGGATCTTCGA+GGG	0.591722	8_3:-60892223	Msa1299590:CDS
ACAAAGATCATCAAATGTAT+TGG	0.418707	8_3:+60890455	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTGCGAAAGCAATTATAAT+AGG	+	chr8_3:60890865-60890884	None:intergenic	30.0%
TATGAAGTACGAAATCTCTT+CGG	-	chr8_3:60890959-60890978	Msa1299590:intron	30.0%
AAAGAGTTACAAGCAGTTAT+GGG	+	chr8_3:60891526-60891545	None:intergenic	30.0%
AAGTAGAGATCATCAAGTAA+TGG	-	chr8_3:60891618-60891637	Msa1299590:intron	30.0%
ACACTAACAAGTATAGTGTT+AGG	+	chr8_3:60891693-60891712	None:intergenic	30.0%
TCTATTTACTTACCTCTGAA+TGG	-	chr8_3:60891743-60891762	Msa1299590:intron	30.0%
CATTTATTGTTTCATAGGGT+TGG	-	chr8_3:60891878-60891897	Msa1299590:intron	30.0%
AATAAACAAGGATGGGAAAA+TGG	+	chr8_3:60892170-60892189	None:intergenic	30.0%
ATTTCCTCACACAATAAACA+AGG	+	chr8_3:60892182-60892201	None:intergenic	30.0%
AACTTGTATAAAGATCAAGC+AGG	+	chr8_3:60892463-60892482	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	60890172	60892563	60890172	ID=Msa1299590;Name=Msa1299590
chr8_3	mRNA	60890172	60892563	60890172	ID=Msa1299590-mRNA-1;Parent=Msa1299590;Name=Msa1299590-mRNA-1;_AED=0.01;_eAED=0.01;_QI=117\|1\|1\|1\|1\|1\|2\|485\|197
chr8_3	exon	60890172	60890840	60890172	ID=Msa1299590-mRNA-1:exon:17922;Parent=Msa1299590-mRNA-1
chr8_3	exon	60892037	60892563	60892037	ID=Msa1299590-mRNA-1:exon:17921;Parent=Msa1299590-mRNA-1
chr8_3	five_prime_UTR	60892447	60892563	60892447	ID=Msa1299590-mRNA-1:five_prime_utr;Parent=Msa1299590-mRNA-1
chr8_3	CDS	60892037	60892446	60892037	ID=Msa1299590-mRNA-1:cds;Parent=Msa1299590-mRNA-1
chr8_3	CDS	60890657	60890840	60890657	ID=Msa1299590-mRNA-1:cds;Parent=Msa1299590-mRNA-1
chr8_3	three_prime_UTR	60890172	60890656	60890172	ID=Msa1299590-mRNA-1:three_prime_utr;Parent=Msa1299590-mRNA-1

Gene Sequence

>Msa1299590

ATGGTGCACGTTGCGTTTTATCGAAACTACGGCAAAACATTCAAGAAGCCTCGTCGTCCATATGAGAAGGAGCGTTTGGATGCTGAGTTGAAGCTGGTCGGAGAGTATGGTCTTCGCTGCAAGCGCGAGCTTTGGAGGGTTCAATACGCTCTTAGCCGTATCCGTAACAATGCTAGAACGCTTTTGACACTGGATGAGAAGAATCCTCGTCGGATCTTCGAGGGTGAAGCTCTTTTGAGGAGGATGTTTAAGCATGGCCTTCTAGATGAGACACAGAACAAGCTCGATTATGTTTTGGCTCTTACTGTTGAGAATTTTCTCGAGCGTCGTCTTCAGACACTCGTCTTCAAATCTGGCATGGCTAAGTCCATTCACCATGCTAGGGTTCTTATCAGGCAGAGGCACATCAGGGTTGGGAGGCAGGTAGTGAACATCCCATCCTTCATGGTTAGGGTTGATTCACAGAAGCACATTGACTTTTCACTCACAAGTCCTTTCGGTGGTGGTCTTCCTGGTCGTGTGAAGCGAAAGAACCTTAAGGCTGCAGCCAAGAAGGCTTCCGGTGGTGATGGTGATGAGGAGGATGAAGATTAA

Protein sequence

>Msa1299590

MVHVAFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARTLLTLDEKNPRRIFEGEALLRRMFKHGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGLPGRVKRKNLKAAAKKASGGDGDEEDED*