Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0202020 | XP_024631234.1 | 97.951 | 244 | 5 | 0 | 1 | 244 | 1 | 244 | 1.93e-174 | 489 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0202020 | sp|Q9LHP1|RL74_ARATH | 82.377 | 244 | 43 | 0 | 1 | 244 | 1 | 244 | 2.57e-152 | 426 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0202020 | A0A396JGV3 | 97.951 | 244 | 5 | 0 | 1 | 244 | 1 | 244 | 9.22e-175 | 489 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000100 | Msa0202020 | 0.800968 | 1.123549e-48 | -8.615850e-47 |
| Msa0002790 | Msa0202020 | 0.801146 | 1.033448e-48 | -8.615850e-47 |
| Msa0003780 | Msa0202020 | 0.810064 | 1.388017e-50 | -8.615850e-47 |
| Msa0022970 | Msa0202020 | 0.875695 | 2.515048e-68 | -8.615850e-47 |
| Msa0040690 | Msa0202020 | 0.821821 | 3.293257e-53 | -8.615850e-47 |
| Msa0046830 | Msa0202020 | 0.811367 | 7.252623e-51 | -8.615850e-47 |
| Msa0047160 | Msa0202020 | 0.842984 | 1.851714e-58 | -8.615850e-47 |
| Msa0048180 | Msa0202020 | 0.826446 | 2.701523e-54 | -8.615850e-47 |
| Msa0074030 | Msa0202020 | 0.808245 | 3.404648e-50 | -8.615850e-47 |
| Msa0077530 | Msa0202020 | 0.835028 | 2.130141e-56 | -8.615850e-47 |
| Msa0079820 | Msa0202020 | 0.815633 | 8.363231e-52 | -8.615850e-47 |
| Msa0094470 | Msa0202020 | 0.823006 | 1.747303e-53 | -8.615850e-47 |
| Msa0116130 | Msa0202020 | 0.803627 | 3.185597e-49 | -8.615850e-47 |
| Msa0116670 | Msa0202020 | 0.828876 | 7.043868e-55 | -8.615850e-47 |
| Msa0118710 | Msa0202020 | 0.835793 | 1.364216e-56 | -8.615850e-47 |
| Msa0127390 | Msa0202020 | 0.813945 | 1.979073e-51 | -8.615850e-47 |
| Msa0133540 | Msa0202020 | 0.806264 | 8.950475e-50 | -8.615850e-47 |
| Msa0173530 | Msa0202020 | 0.826483 | 2.646085e-54 | -8.615850e-47 |
| Msa0180020 | Msa0202020 | 0.831210 | 1.899721e-55 | -8.615850e-47 |
| Msa0187930 | Msa0202020 | 0.847800 | 9.191893e-60 | -8.615850e-47 |
| Msa0189300 | Msa0202020 | 0.815482 | 9.037229e-52 | -8.615850e-47 |
| Msa0194540 | Msa0202020 | 0.847319 | 1.247020e-59 | -8.615850e-47 |
| Msa0202020 | Msa0218830 | 0.802088 | 6.623423e-49 | -8.615850e-47 |
| Msa0202020 | Msa0231660 | 0.817428 | 3.315289e-52 | -8.615850e-47 |
| Msa0202020 | Msa0244780 | 0.844645 | 6.649229e-59 | -8.615850e-47 |
| Msa0202020 | Msa0258850 | 0.801724 | 7.867805e-49 | -8.615850e-47 |
| Msa0202020 | Msa0262480 | 0.827476 | 1.532116e-54 | -8.615850e-47 |
| Msa0202020 | Msa0264010 | 0.811944 | 5.433137e-51 | -8.615850e-47 |
| Msa0202020 | Msa0268130 | 0.841119 | 5.764343e-58 | -8.615850e-47 |
| Msa0202020 | Msa0269180 | 0.816803 | 4.580282e-52 | -8.615850e-47 |
| Msa0202020 | Msa0289580 | 0.819566 | 1.085646e-52 | -8.615850e-47 |
| Msa0202020 | Msa0289610 | 0.829852 | 4.081205e-55 | -8.615850e-47 |
| Msa0202020 | Msa0298200 | 0.804887 | 1.740530e-49 | -8.615850e-47 |
| Msa0202020 | Msa0298990 | 0.843898 | 1.055340e-58 | -8.615850e-47 |
| Msa0202020 | Msa0300350 | 0.833934 | 4.008463e-56 | -8.615850e-47 |
| Msa0202020 | Msa0327300 | 0.843331 | 1.496336e-58 | -8.615850e-47 |
| Msa0202020 | Msa0327330 | 0.801095 | 1.058257e-48 | -8.615850e-47 |
| Msa0202020 | Msa0393370 | 0.800275 | 1.555433e-48 | -8.615850e-47 |
| Msa0202020 | Msa0443390 | 0.809235 | 2.091614e-50 | -8.615850e-47 |
| Msa0202020 | Msa0520660 | 0.809296 | 2.030112e-50 | -8.615850e-47 |
| Msa0202020 | Msa0526540 | 0.853417 | 2.423230e-61 | -8.615850e-47 |
| Msa0202020 | Msa0527150 | 0.801984 | 6.957993e-49 | -8.615850e-47 |
| Msa0202020 | Msa0554290 | 0.809265 | 2.060809e-50 | -8.615850e-47 |
| Msa0202020 | Msa0571920 | 0.828599 | 8.219052e-55 | -8.615850e-47 |
| Msa0202020 | Msa0576940 | 0.849903 | 2.398133e-60 | -8.615850e-47 |
| Msa0202020 | Msa0586420 | 0.801299 | 9.612721e-49 | -8.615850e-47 |
| Msa0202020 | Msa0603320 | 0.831171 | 1.941439e-55 | -8.615850e-47 |
| Msa0202020 | Msa0615440 | 0.855256 | 7.129081e-62 | -8.615850e-47 |
| Msa0202020 | Msa0615580 | 0.800734 | 1.254370e-48 | -8.615850e-47 |
| Msa0202020 | Msa0623200 | 0.808123 | 3.614924e-50 | -8.615850e-47 |
| Msa0202020 | Msa0654870 | 0.809575 | 1.768069e-50 | -8.615850e-47 |
| Msa0202020 | Msa0666230 | 0.824687 | 7.050840e-54 | -8.615850e-47 |
| Msa0202020 | Msa0695450 | 0.808518 | 2.977003e-50 | -8.615850e-47 |
| Msa0202020 | Msa0698490 | 0.854256 | 1.389674e-61 | -8.615850e-47 |
| Msa0202020 | Msa0698660 | 0.853945 | 1.708629e-61 | -8.615850e-47 |
| Msa0202020 | Msa0719420 | 0.822635 | 2.131356e-53 | -8.615850e-47 |
| Msa0202020 | Msa0729200 | 0.812511 | 4.086724e-51 | -8.615850e-47 |
| Msa0202020 | Msa0738100 | 0.807986 | 3.866550e-50 | -8.615850e-47 |
| Msa0202020 | Msa0750920 | 0.826073 | 3.313906e-54 | -8.615850e-47 |
| Msa0202020 | Msa0769590 | 0.818971 | 1.483803e-52 | -8.615850e-47 |
| Msa0202020 | Msa0780490 | 0.819894 | 9.138798e-53 | -8.615850e-47 |
| Msa0202020 | Msa0785130 | 0.839257 | 1.765809e-57 | -8.615850e-47 |
| Msa0202020 | Msa0789680 | 0.823528 | 1.319361e-53 | -8.615850e-47 |
| Msa0202020 | Msa0802410 | 0.822913 | 1.837017e-53 | -8.615850e-47 |
| Msa0202020 | Msa0806880 | 0.829463 | 5.075421e-55 | -8.615850e-47 |
| Msa0202020 | Msa0817540 | 0.811056 | 8.471659e-51 | -8.615850e-47 |
| Msa0202020 | Msa1006840 | 0.814463 | 1.521053e-51 | -8.615850e-47 |
| Msa0202020 | Msa1012740 | 0.821582 | 3.740776e-53 | -8.615850e-47 |
| Msa0202020 | Msa1019240 | 0.839737 | 1.325141e-57 | -8.615850e-47 |
| Msa0202020 | Msa1019260 | 0.821519 | 3.868211e-53 | -8.615850e-47 |
| Msa0202020 | Msa1039520 | 0.862052 | 6.659322e-64 | -8.615850e-47 |
| Msa0202020 | Msa1043690 | 0.827755 | 1.312685e-54 | -8.615850e-47 |
| Msa0202020 | Msa1072710 | 0.838394 | 2.951759e-57 | -8.615850e-47 |
| Msa0202020 | Msa1088490 | 0.800084 | 1.701344e-48 | -8.615850e-47 |
| Msa0202020 | Msa1104140 | 0.830830 | 2.354744e-55 | -8.615850e-47 |
| Msa0202020 | Msa1104210 | 0.826749 | 2.286693e-54 | -8.615850e-47 |
| Msa0202020 | Msa1135890 | 0.858479 | 8.011650e-63 | -8.615850e-47 |
| Msa0202020 | Msa1166870 | 0.815298 | 9.932193e-52 | -8.615850e-47 |
| Msa0202020 | Msa1260530 | 0.824953 | 6.103215e-54 | -8.615850e-47 |
| Msa0202020 | Msa1265630 | 0.840079 | 1.079236e-57 | -8.615850e-47 |
| Msa0202020 | Msa1331710 | 0.828312 | 9.640171e-55 | -8.615850e-47 |
| Msa0202020 | Msa1349570 | 0.824158 | 9.390290e-54 | -8.615850e-47 |
| Msa0202020 | Msa1363330 | 0.852494 | 4.450755e-61 | -8.615850e-47 |
| Msa0202020 | Msa1366180 | 0.806818 | 6.837805e-50 | -8.615850e-47 |
| Msa0202020 | Msa1369190 | 0.816396 | 5.649921e-52 | -8.615850e-47 |
| Msa0202020 | Msa1374120 | 0.833087 | 6.523670e-56 | -8.615850e-47 |
| Msa0202020 | Msa1386600 | 0.853278 | 2.655425e-61 | -8.615850e-47 |
| Msa0202020 | Msa1387410 | 0.850887 | 1.269979e-60 | -8.615850e-47 |
| Msa0202020 | Msa1394290 | 0.835588 | 1.537956e-56 | -8.615850e-47 |
| Msa0202020 | Msa1407070 | 0.833692 | 4.607255e-56 | -8.615850e-47 |
| Msa0202020 | Msa1413500 | 0.836951 | 6.925756e-57 | -8.615850e-47 |
| Msa0202020 | Msa1427560 | 0.849641 | 2.838351e-60 | -8.615850e-47 |
| Msa0202020 | Msa1448690 | 0.840757 | 7.173970e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0202020 | MtrunA17_Chr1g0155331 | 97.951 | 244 | 5 | 0 | 1 | 244 | 1 | 244 | 1.78e-178 | 489 |
| Msa0202020 | MtrunA17_Chr2g0298841 | 98.361 | 244 | 4 | 0 | 1 | 244 | 1 | 244 | 3.01e-178 | 489 |
| Msa0202020 | MtrunA17_Chr4g0002321 | 86.722 | 241 | 32 | 0 | 4 | 244 | 3 | 243 | 6.72e-159 | 440 |
| Msa0202020 | MtrunA17_Chr7g0237701 | 45.749 | 247 | 130 | 2 | 1 | 244 | 1 | 246 | 1.94e-73 | 223 |
| Msa0202020 | MtrunA17_Chr1g0155311 | 98.361 | 61 | 1 | 0 | 174 | 234 | 2 | 62 | 3.29e-39 | 130 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0202020 | AT3G13580.5 | 82.377 | 244 | 43 | 0 | 1 | 244 | 1 | 244 | 2.61e-153 | 426 |
| Msa0202020 | AT3G13580.4 | 82.377 | 244 | 43 | 0 | 1 | 244 | 1 | 244 | 2.61e-153 | 426 |
| Msa0202020 | AT3G13580.2 | 82.377 | 244 | 43 | 0 | 1 | 244 | 1 | 244 | 2.61e-153 | 426 |
| Msa0202020 | AT3G13580.3 | 82.377 | 244 | 43 | 0 | 1 | 244 | 1 | 244 | 2.61e-153 | 426 |
| Msa0202020 | AT3G13580.1 | 82.377 | 244 | 43 | 0 | 1 | 244 | 1 | 244 | 2.61e-153 | 426 |
| Msa0202020 | AT3G13580.7 | 82.377 | 244 | 43 | 0 | 1 | 244 | 1 | 244 | 2.61e-153 | 426 |
| Msa0202020 | AT3G13580.8 | 82.377 | 244 | 43 | 0 | 1 | 244 | 1 | 244 | 2.61e-153 | 426 |
| Msa0202020 | AT3G13580.6 | 82.377 | 244 | 43 | 0 | 1 | 244 | 1 | 244 | 2.61e-153 | 426 |
| Msa0202020 | AT3G13580.9 | 82.377 | 244 | 43 | 0 | 1 | 244 | 1 | 244 | 2.61e-153 | 426 |
| Msa0202020 | AT2G01250.1 | 84.583 | 240 | 37 | 0 | 5 | 244 | 3 | 242 | 6.89e-152 | 422 |
| Msa0202020 | AT2G44120.2 | 83.333 | 240 | 40 | 0 | 5 | 244 | 8 | 247 | 2.47e-150 | 419 |
| Msa0202020 | AT2G44120.1 | 83.333 | 240 | 40 | 0 | 5 | 244 | 3 | 242 | 2.86e-150 | 418 |
| Msa0202020 | AT2G01250.2 | 80.000 | 175 | 35 | 0 | 5 | 179 | 3 | 177 | 5.40e-97 | 281 |
| Msa0202020 | AT1G80750.1 | 43.320 | 247 | 137 | 2 | 1 | 244 | 1 | 247 | 1.95e-63 | 198 |
Find 86 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAAAATCTTCCTTGATTT+TGG | 0.006132 | 2_1:+24001814 | None:intergenic |
| TTCTCTGACACTCTTCAAAT+TGG | 0.182246 | 2_1:+24000722 | None:intergenic |
| TGCTTCTTCAAAACAGATTC+AGG | 0.223629 | 2_1:+24002415 | None:intergenic |
| CTAAGCTCTTGTTCATTATC+AGG | 0.259843 | 2_1:-24002102 | Msa0202020:CDS |
| AATATTCAATTGCAGGTTCT+TGG | 0.263781 | 2_1:-24000347 | Msa0202020:intron |
| AAGGGAGGAGTAATTTATTA+AGG | 0.269195 | 2_1:-23999729 | Msa0202020:three_prime_UTR |
| ACTCATTAGAAGGATGAATT+AGG | 0.270598 | 2_1:-24000138 | Msa0202020:exon |
| TACAATTGTTAGAATCTATA+TGG | 0.271097 | 2_1:-23999888 | Msa0202020:three_prime_UTR |
| GTGTCGTTTAAGGTTGATTA+TGG | 0.274625 | 2_1:-24000106 | Msa0202020:three_prime_UTR |
| CTGAAACCAGGAAGCTTATC+TGG | 0.274950 | 2_1:-24002327 | Msa0202020:CDS |
| TAGAAGGATGAATTAGGTTT+TGG | 0.280297 | 2_1:-24000132 | Msa0202020:exon |
| TTTCAAGCTCAAAGCTCCTT+TGG | 0.284641 | 2_1:-24000234 | Msa0202020:CDS |
| GTGGTTTCTTAACTAAAATA+AGG | 0.289087 | 2_1:-23999793 | Msa0202020:three_prime_UTR |
| TTCAAGCTCAAAGCTCCTTT+GGG | 0.329811 | 2_1:-24000233 | Msa0202020:CDS |
| TTGATCTACAAGCGTGGTTA+TGG | 0.334090 | 2_1:-24000699 | Msa0202020:CDS |
| TTCAGCAAAAGGAGTTGATT+AGG | 0.371855 | 2_1:-24002174 | Msa0202020:intron |
| AAAACTTTCACTGCACTTGC+AGG | 0.373710 | 2_1:+23999985 | None:intergenic |
| TCTACTCCAGATAAGCTTCC+TGG | 0.375959 | 2_1:+24002321 | None:intergenic |
| CGGTTGCTTTGTTCACTTTG+AGG | 0.382967 | 2_1:+24000880 | None:intergenic |
| AACACTTGAACTCAACATAA+AGG | 0.387036 | 2_1:-23999748 | Msa0202020:three_prime_UTR |
| AAGGTGGTGATGCTGGTAAC+AGG | 0.401808 | 2_1:-24000178 | Msa0202020:CDS |
| ATATTCAATTGCAGGTTCTT+GGG | 0.423006 | 2_1:-24000346 | Msa0202020:intron |
| ACACTTGAACTCAACATAAA+GGG | 0.426348 | 2_1:-23999747 | Msa0202020:three_prime_UTR |
| GTACTCCTTAGCGTACTGTT+TGG | 0.434466 | 2_1:+24002297 | None:intergenic |
| TGGTTTCTTAACTAAAATAA+GGG | 0.436696 | 2_1:-23999792 | Msa0202020:three_prime_UTR |
| ATGGGCATTGGTGAAGAAAC+AGG | 0.439903 | 2_1:-24002377 | Msa0202020:CDS |
| ACAACATCGATTCACTGAAA+TGG | 0.441842 | 2_1:-24002464 | Msa0202020:exon |
| ACATCAATGAACTCATTAGA+AGG | 0.442744 | 2_1:-24000148 | Msa0202020:CDS |
| CTTATTTGTCAATGATGACT+TGG | 0.447185 | 2_1:-23999960 | Msa0202020:three_prime_UTR |
| TGAAGGTGAACGGCGCTTCA+AGG | 0.448474 | 2_1:+24002505 | None:intergenic |
| GCAGCTTCTGCGATTGAGAC+AGG | 0.461345 | 2_1:-24001794 | Msa0202020:intron |
| GTTGAGCCATATGTCACCTA+TGG | 0.461514 | 2_1:-24000840 | Msa0202020:CDS |
| TCTCTGACACTCTTCAAATT+GGG | 0.464078 | 2_1:+24000723 | None:intergenic |
| GAAGCGTGAAGCTAAGCTTA+AGG | 0.464202 | 2_1:-24002149 | Msa0202020:CDS |
| AAGCGTGAAGCTAAGCTTAA+GGG | 0.467088 | 2_1:-24002148 | Msa0202020:CDS |
| GCATACCCATAGGTGACATA+TGG | 0.482193 | 2_1:+24000834 | None:intergenic |
| AGATAACTCTATCATCGAAC+AGG | 0.483740 | 2_1:-24000646 | Msa0202020:intron |
| AAGAGAAATCACTATGTTGA+AGG | 0.489111 | 2_1:-24000197 | Msa0202020:CDS |
| ATGAACAAGAGCTTAGCTTC+AGG | 0.491403 | 2_1:+24002109 | None:intergenic |
| GAAGAAGCAGAAAAGGAATG+AGG | 0.492373 | 2_1:-24002401 | Msa0202020:CDS |
| AGAAGAAGAGAGCTGAAACC+AGG | 0.494410 | 2_1:-24002339 | Msa0202020:CDS |
| CAACCGTGAATATGCTCCAC+AGG | 0.496550 | 2_1:-24000863 | Msa0202020:CDS |
| TAATTTCAGTATCAATGCAA+TGG | 0.497010 | 2_1:-24001839 | Msa0202020:intron |
| AAAGGAGCTTTGAGCTTGAA+AGG | 0.504831 | 2_1:+24000236 | None:intergenic |
| GAGAGGCAAACAACTTCCTA+TGG | 0.504947 | 2_1:-24000259 | Msa0202020:CDS |
| TCTCTGAGTGAAAGTGAAGC+AGG | 0.506218 | 2_1:-23999863 | Msa0202020:three_prime_UTR |
| AACCCTGTGGAGCATATTCA+CGG | 0.507599 | 2_1:+24000860 | None:intergenic |
| TTCTGTGTTAATATTTGTGA+TGG | 0.508992 | 2_1:-23999823 | Msa0202020:three_prime_UTR |
| TATTTGTGATGGGAGAATAG+TGG | 0.511227 | 2_1:-23999812 | Msa0202020:three_prime_UTR |
| ATGCAATGGACCCAAAATCA+AGG | 0.518414 | 2_1:-24001825 | Msa0202020:CDS |
| TGAAGTGAGGTCCAACAGTA+AGG | 0.528046 | 2_1:+24000282 | None:intergenic |
| GCAGAAAAGGAATGAGGAAT+GGG | 0.530263 | 2_1:-24002395 | Msa0202020:CDS |
| AAAGTGAAGCAGGGAATGTA+TGG | 0.531319 | 2_1:-23999853 | Msa0202020:three_prime_UTR |
| TATGTTGAAGGTGGTGATGC+TGG | 0.533299 | 2_1:-24000185 | Msa0202020:CDS |
| GTTGTGGTTCTGTTCTGTGA+AGG | 0.534006 | 2_1:+24002488 | None:intergenic |
| AAGGAATGAGGAATGGGCAT+TGG | 0.536098 | 2_1:-24002389 | Msa0202020:CDS |
| AGCAGAAAAGGAATGAGGAA+TGG | 0.540608 | 2_1:-24002396 | Msa0202020:CDS |
| ATTCATGAGATCCTTACTGT+TGG | 0.542331 | 2_1:-24000293 | Msa0202020:CDS |
| GTGGTTATGGAAAGGTTGAT+AGG | 0.547437 | 2_1:-24000686 | Msa0202020:CDS |
| TTGCAGGTTCTTGGGAAACA+TGG | 0.547799 | 2_1:-24000338 | Msa0202020:intron |
| TTCTGTTCTGTGAAGGTGAA+CGG | 0.551457 | 2_1:+24002495 | None:intergenic |
| GTGAATCGATGTTGTTGTTG+TGG | 0.553156 | 2_1:+24002472 | None:intergenic |
| TTCTTCTTCATGCCACCCAA+AGG | 0.554983 | 2_1:+24000218 | None:intergenic |
| CGCTAAGGAGTACGATGACT+CGG | 0.560110 | 2_1:-24002287 | Msa0202020:intron |
| TTGTTGTTTGCATTCACGAA+AGG | 0.561345 | 2_1:-23999924 | Msa0202020:three_prime_UTR |
| CTTTGAGCTTGAAAGGCCAT+AGG | 0.568033 | 2_1:+24000243 | None:intergenic |
| AAGCTCAAAGCTCCTTTGGG+TGG | 0.570830 | 2_1:-24000230 | Msa0202020:CDS |
| TTGTTTGCCTCTCTGAAGTG+AGG | 0.573961 | 2_1:+24000269 | None:intergenic |
| TAGAGCCAAACAGTACGCTA+AGG | 0.574389 | 2_1:-24002302 | Msa0202020:CDS |
| CAAAACAGATTCAGGAACAA+CGG | 0.575093 | 2_1:+24002423 | None:intergenic |
| TTGTTCATTATCAGGATCAG+AGG | 0.578804 | 2_1:-24002094 | Msa0202020:CDS |
| TTGAGCCATATGTCACCTAT+GGG | 0.595042 | 2_1:-24000839 | Msa0202020:intron |
| TCTGTGTTAATATTTGTGAT+GGG | 0.595084 | 2_1:-23999822 | Msa0202020:three_prime_UTR |
| ATTCACTGAAATGGCCAAAG+AGG | 0.608425 | 2_1:-24002455 | Msa0202020:exon |
| CTCTGAGTGAAAGTGAAGCA+GGG | 0.610321 | 2_1:-23999862 | Msa0202020:three_prime_UTR |
| TGTTCATTATCAGGATCAGA+GGG | 0.611252 | 2_1:-24002093 | Msa0202020:intron |
| CTACAAGCGTGGTTATGGAA+AGG | 0.617075 | 2_1:-24000694 | Msa0202020:CDS |
| CGTGAAGCTAAGCTTAAGGG+TGG | 0.634387 | 2_1:-24002145 | Msa0202020:CDS |
| AGAAATCACTATGTTGAAGG+TGG | 0.637998 | 2_1:-24000194 | Msa0202020:CDS |
| AGGTGGTGATGCTGGTAACA+GGG | 0.651466 | 2_1:-24000177 | Msa0202020:CDS |
| TGACATATGGCTCAACCCTG+TGG | 0.662121 | 2_1:+24000847 | None:intergenic |
| CTTGAACTCAACATAAAGGG+AGG | 0.665267 | 2_1:-23999744 | Msa0202020:three_prime_UTR |
| AACCGTGAATATGCTCCACA+GGG | 0.683451 | 2_1:-24000862 | Msa0202020:CDS |
| AGAGAATTGATCTACAAGCG+TGG | 0.711706 | 2_1:-24000705 | Msa0202020:CDS |
| TGTTGGACCTCACTTCAGAG+AGG | 0.727556 | 2_1:-24000276 | Msa0202020:CDS |
| TGGTGATGCTGGTAACAGGG+AGG | 0.759776 | 2_1:-24000174 | Msa0202020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATAATTTTGTTCTGTTT+TGG | - | chr2_1:24000205-24000224 | Msa0202020:CDS | 15.0% |
| !! | ATTCTGATTATAACTTTAAA+CGG | + | chr2_1:24000523-24000542 | None:intergenic | 15.0% |
| !!! | AAAGGAAAAAAAAGTTTTTT+TGG | + | chr2_1:24000845-24000864 | None:intergenic | 15.0% |
| !!! | TTTTTTTTAGTTTAGAGATA+AGG | - | chr2_1:24001124-24001143 | Msa0202020:intron | 15.0% |
| !! | AAAAATTAAAGAGAAATACT+AGG | + | chr2_1:24001171-24001190 | None:intergenic | 15.0% |
| !!! | TAGTATTTCTCTTTAATTTT+TGG | - | chr2_1:24001170-24001189 | Msa0202020:intron | 15.0% |
| !!! | AAAATCTTTAAAAACAAAAC+TGG | + | chr2_1:24002135-24002154 | None:intergenic | 15.0% |
| !! | AAAAATTAGTATGTTTGTAT+TGG | - | chr2_1:24002486-24002505 | Msa0202020:five_prime_UTR | 15.0% |
| !!! | ACAATATCTTGATTTTTTAA+AGG | - | chr2_1:24002514-24002533 | Msa0202020:five_prime_UTR | 15.0% |
| !! | TGTATTAATAATTCAGATAG+AGG | + | chr2_1:24000794-24000813 | None:intergenic | 20.0% |
| !!! | TTTCCTTTTTTGTATTGTTT+AGG | - | chr2_1:24000857-24000876 | Msa0202020:CDS | 20.0% |
| !! | ATCTTCAATAGTTAAGTAAA+AGG | + | chr2_1:24001024-24001043 | None:intergenic | 20.0% |
| !!! | GATTCTAACTTTGAAAATTT+GGG | + | chr2_1:24001676-24001695 | None:intergenic | 20.0% |
| !!! | AGATTCTAACTTTGAAAATT+TGG | + | chr2_1:24001677-24001696 | None:intergenic | 20.0% |
| !! | GCAAAATAGAAAAAAATAAC+TGG | + | chr2_1:24001812-24001831 | None:intergenic | 20.0% |
| !! | TACAATTGTTAGAATCTATA+TGG | - | chr2_1:24002300-24002319 | Msa0202020:CDS | 20.0% |
| !! | TGGTTTCTTAACTAAAATAA+GGG | - | chr2_1:24002396-24002415 | Msa0202020:CDS | 20.0% |
| ! | TAAAAATTATGTATCCTGTG+TGG | - | chr2_1:24000275-24000294 | Msa0202020:CDS | 25.0% |
| ! | AAAAATTATGTATCCTGTGT+GGG | - | chr2_1:24000276-24000295 | Msa0202020:CDS | 25.0% |
| ! | TAATTTCAGTATCAATGCAA+TGG | - | chr2_1:24000349-24000368 | Msa0202020:intron | 25.0% |
| ! | AAGGGATCAATAGTTATTAT+AGG | - | chr2_1:24000649-24000668 | Msa0202020:CDS | 25.0% |
| ! | ATAATTGAGCTTTCATCTTA+TGG | - | chr2_1:24000700-24000719 | Msa0202020:CDS | 25.0% |
| ! | ACATGAAAATAACCAATTGT+TGG | + | chr2_1:24000736-24000755 | None:intergenic | 25.0% |
| ! | TAAGTAAAAGGTTATCATAC+AGG | + | chr2_1:24001012-24001031 | None:intergenic | 25.0% |
| !! | GCTTATTCTTCTATTTGTTT+TGG | - | chr2_1:24001262-24001281 | Msa0202020:intron | 25.0% |
| ! | TAACTCATTATAACTCTGTA+TGG | - | chr2_1:24001407-24001426 | Msa0202020:intron | 25.0% |
| ! | AACTCATTATAACTCTGTAT+GGG | - | chr2_1:24001408-24001427 | Msa0202020:intron | 25.0% |
| ! | TAAAATACAAAGTCAGAATG+AGG | + | chr2_1:24001653-24001672 | None:intergenic | 25.0% |
| ! | TTCTGTGTTAATATTTGTGA+TGG | - | chr2_1:24002365-24002384 | Msa0202020:CDS | 25.0% |
| ! | TCTGTGTTAATATTTGTGAT+GGG | - | chr2_1:24002366-24002385 | Msa0202020:CDS | 25.0% |
| ! | GTGGTTTCTTAACTAAAATA+AGG | - | chr2_1:24002395-24002414 | Msa0202020:CDS | 25.0% |
| AATTTGTGTGTTTCAGCAAA+AGG | - | chr2_1:24000003-24000022 | Msa0202020:three_prime_UTR | 30.0% | |
| !!! | CTGTTTTGGAAAAATGATAG+AGG | - | chr2_1:24000219-24000238 | Msa0202020:CDS | 30.0% |
| ! | GCAAAATCTTCCTTGATTTT+GGG | + | chr2_1:24000376-24000395 | None:intergenic | 30.0% |
| ! | TGCAAAATCTTCCTTGATTT+TGG | + | chr2_1:24000377-24000396 | None:intergenic | 30.0% |
| !!! | CAATTGGTTTTGTTCTTGAT+GGG | - | chr2_1:24000442-24000461 | Msa0202020:intron | 30.0% |
| ! | TTTCAAAGTGCCTTCAATTA+AGG | - | chr2_1:24000630-24000649 | Msa0202020:intron | 30.0% |
| ! | TTCAAAGTGCCTTCAATTAA+GGG | - | chr2_1:24000631-24000650 | Msa0202020:intron | 30.0% |
| ACTATTGATCCCTTAATTGA+AGG | + | chr2_1:24000643-24000662 | None:intergenic | 30.0% | |
| ! | TAATTTTGCGGTGATTATGT+TGG | + | chr2_1:24000769-24000788 | None:intergenic | 30.0% |
| CAGCCTAAACAATACAAAAA+AGG | + | chr2_1:24000863-24000882 | None:intergenic | 30.0% | |
| GCTGTTCATCTATATAAGAA+TGG | - | chr2_1:24000879-24000898 | Msa0202020:CDS | 30.0% | |
| CTAATTATTTGATACTGAGC+AGG | - | chr2_1:24000981-24001000 | Msa0202020:intron | 30.0% | |
| CTAAACCAGTTGGTTATAAT+GGG | + | chr2_1:24001061-24001080 | None:intergenic | 30.0% | |
| ACTAAACCAGTTGGTTATAA+TGG | + | chr2_1:24001062-24001081 | None:intergenic | 30.0% | |
| AAAATTGACAATGACAAGGA+TGG | + | chr2_1:24001088-24001107 | None:intergenic | 30.0% | |
| TCAGAAAATTGACAATGACA+AGG | + | chr2_1:24001092-24001111 | None:intergenic | 30.0% | |
| ! | TTTAGTTTAGAGATAAGGTG+TGG | - | chr2_1:24001129-24001148 | Msa0202020:intron | 30.0% |
| !!! | TCTCTTTAATTTTTGGCTTC+TGG | - | chr2_1:24001177-24001196 | Msa0202020:intron | 30.0% |
| !! | GGTGCTATTATTATTGTTGA+AGG | - | chr2_1:24001778-24001797 | Msa0202020:intron | 30.0% |
| CTGACATAATATTCAATTGC+AGG | - | chr2_1:24001834-24001853 | Msa0202020:intron | 30.0% | |
| AATATTCAATTGCAGGTTCT+TGG | - | chr2_1:24001841-24001860 | Msa0202020:intron | 30.0% | |
| ATATTCAATTGCAGGTTCTT+GGG | - | chr2_1:24001842-24001861 | Msa0202020:intron | 30.0% | |
| AAGAGAAATCACTATGTTGA+AGG | - | chr2_1:24001991-24002010 | Msa0202020:intron | 30.0% | |
| ACATCAATGAACTCATTAGA+AGG | - | chr2_1:24002040-24002059 | Msa0202020:intron | 30.0% | |
| ACTCATTAGAAGGATGAATT+AGG | - | chr2_1:24002050-24002069 | Msa0202020:intron | 30.0% | |
| ! | TAGAAGGATGAATTAGGTTT+TGG | - | chr2_1:24002056-24002075 | Msa0202020:intron | 30.0% |
| CTTATTTGTCAATGATGACT+TGG | - | chr2_1:24002228-24002247 | Msa0202020:intron | 30.0% | |
| AACACTTGAACTCAACATAA+AGG | - | chr2_1:24002440-24002459 | Msa0202020:CDS | 30.0% | |
| ACACTTGAACTCAACATAAA+GGG | - | chr2_1:24002441-24002460 | Msa0202020:CDS | 30.0% | |
| AAGGGAGGAGTAATTTATTA+AGG | - | chr2_1:24002459-24002478 | Msa0202020:exon | 30.0% | |
| !! | ACAACATCGATTCACTGAAA+TGG | - | chr2_1:23999724-23999743 | Msa0202020:three_prime_UTR | 35.0% |
| CAAAACAGATTCAGGAACAA+CGG | + | chr2_1:23999768-23999787 | None:intergenic | 35.0% | |
| TGCTTCTTCAAAACAGATTC+AGG | + | chr2_1:23999776-23999795 | None:intergenic | 35.0% | |
| !!! | CTGTTTTGAAGAAGCAGAAA+AGG | - | chr2_1:23999780-23999799 | Msa0202020:three_prime_UTR | 35.0% |
| ! | TTCAGCAAAAGGAGTTGATT+AGG | - | chr2_1:24000014-24000033 | Msa0202020:three_prime_UTR | 35.0% |
| CTAAGCTCTTGTTCATTATC+AGG | - | chr2_1:24000086-24000105 | Msa0202020:three_prime_UTR | 35.0% | |
| TTGTTCATTATCAGGATCAG+AGG | - | chr2_1:24000094-24000113 | Msa0202020:three_prime_UTR | 35.0% | |
| TGTTCATTATCAGGATCAGA+GGG | - | chr2_1:24000095-24000114 | Msa0202020:three_prime_UTR | 35.0% | |
| CAAATAAGAATAACCCACAC+AGG | + | chr2_1:24000292-24000311 | None:intergenic | 35.0% | |
| TTGAGACAGGTAAATCAGAT+TGG | - | chr2_1:24000407-24000426 | Msa0202020:intron | 35.0% | |
| ACAGGTAAATCAGATTGGAT+TGG | - | chr2_1:24000412-24000431 | Msa0202020:intron | 35.0% | |
| !! | TTGGATTGGTTTGTTGCAAT+TGG | - | chr2_1:24000426-24000445 | Msa0202020:intron | 35.0% |
| !!! | GCAATTGGTTTTGTTCTTGA+TGG | - | chr2_1:24000441-24000460 | Msa0202020:intron | 35.0% |
| !! | TTTTGTTCTTGATGGGTGTT+TGG | - | chr2_1:24000449-24000468 | Msa0202020:intron | 35.0% |
| ! | TTAGTTGATGTATTTGTCGC+TGG | - | chr2_1:24000486-24000505 | Msa0202020:intron | 35.0% |
| TGATTGCACTTTGCAATTGT+TGG | - | chr2_1:24000592-24000611 | Msa0202020:intron | 35.0% | |
| GATTGCACTTTGCAATTGTT+GGG | - | chr2_1:24000593-24000612 | Msa0202020:intron | 35.0% | |
| ! | CAGATAGAGGAGTAATTTTG+CGG | + | chr2_1:24000781-24000800 | None:intergenic | 35.0% |
| ATTCACCCATTATAACCAAC+TGG | - | chr2_1:24001053-24001072 | Msa0202020:intron | 35.0% | |
| ATACTCGTATCTTCTAGACT+CGG | - | chr2_1:24001221-24001240 | Msa0202020:intron | 35.0% | |
| TCTCTGACACTCTTCAAATT+GGG | + | chr2_1:24001468-24001487 | None:intergenic | 35.0% | |
| TTCTCTGACACTCTTCAAAT+TGG | + | chr2_1:24001469-24001488 | None:intergenic | 35.0% | |
| AGATAACTCTATCATCGAAC+AGG | - | chr2_1:24001542-24001561 | Msa0202020:intron | 35.0% | |
| TGTGTAATCGAATGAAAGCA+GGG | + | chr2_1:24001591-24001610 | None:intergenic | 35.0% | |
| AATAATAGCACCACCATACA+CGG | + | chr2_1:24001770-24001789 | None:intergenic | 35.0% | |
| ATTCATGAGATCCTTACTGT+TGG | - | chr2_1:24001895-24001914 | Msa0202020:intron | 35.0% | |
| AGAAATCACTATGTTGAAGG+TGG | - | chr2_1:24001994-24002013 | Msa0202020:intron | 35.0% | |
| !! | GTGTCGTTTAAGGTTGATTA+TGG | - | chr2_1:24002082-24002101 | Msa0202020:intron | 35.0% |
| !! | TTGTTGTTTGCATTCACGAA+AGG | - | chr2_1:24002264-24002283 | Msa0202020:intron | 35.0% |
| ! | TATTTGTGATGGGAGAATAG+TGG | - | chr2_1:24002376-24002395 | Msa0202020:CDS | 35.0% |
| TTCTGTTCTGTGAAGGTGAA+CGG | + | chr2_1:23999696-23999715 | None:intergenic | 40.0% | |
| ! | GTGAATCGATGTTGTTGTTG+TGG | + | chr2_1:23999719-23999738 | None:intergenic | 40.0% |
| ATTCACTGAAATGGCCAAAG+AGG | - | chr2_1:23999733-23999752 | Msa0202020:three_prime_UTR | 40.0% | |
| ! | AACGGTTTTCACTTCCTCTT+TGG | + | chr2_1:23999750-23999769 | None:intergenic | 40.0% |
| GAAGAAGCAGAAAAGGAATG+AGG | - | chr2_1:23999787-23999806 | Msa0202020:three_prime_UTR | 40.0% | |
| AGCAGAAAAGGAATGAGGAA+TGG | - | chr2_1:23999792-23999811 | Msa0202020:three_prime_UTR | 40.0% | |
| GCAGAAAAGGAATGAGGAAT+GGG | - | chr2_1:23999793-23999812 | Msa0202020:three_prime_UTR | 40.0% | |
| AAGCGTGAAGCTAAGCTTAA+GGG | - | chr2_1:24000040-24000059 | Msa0202020:three_prime_UTR | 40.0% | |
| ATGAACAAGAGCTTAGCTTC+AGG | + | chr2_1:24000082-24000101 | None:intergenic | 40.0% | |
| ATGCAATGGACCCAAAATCA+AGG | - | chr2_1:24000363-24000382 | Msa0202020:intron | 40.0% | |
| TCGGTGCAATTTATCAGTGT+AGG | - | chr2_1:24001240-24001259 | Msa0202020:intron | 40.0% | |
| !! | TTTTGGCTGCAGATCTTCAA+TGG | - | chr2_1:24001279-24001298 | Msa0202020:intron | 40.0% |
| TTGAGCCATATGTCACCTAT+GGG | - | chr2_1:24001349-24001368 | Msa0202020:intron | 40.0% | |
| TTGAGATTCTGCATACCCAT+AGG | + | chr2_1:24001367-24001386 | None:intergenic | 40.0% | |
| AGAGAATTGATCTACAAGCG+TGG | - | chr2_1:24001483-24001502 | Msa0202020:intron | 40.0% | |
| TTGATCTACAAGCGTGGTTA+TGG | - | chr2_1:24001489-24001508 | Msa0202020:intron | 40.0% | |
| ! | GTGGTTATGGAAAGGTTGAT+AGG | - | chr2_1:24001502-24001521 | Msa0202020:intron | 40.0% |
| CTGTGTAATCGAATGAAAGC+AGG | + | chr2_1:24001592-24001611 | None:intergenic | 40.0% | |
| AATGAGGAGAGATCCTATCT+AGG | + | chr2_1:24001637-24001656 | None:intergenic | 40.0% | |
| TTAGACAAAGTCACGCAATC+TGG | + | chr2_1:24001726-24001745 | None:intergenic | 40.0% | |
| ATAATAGCACCACCATACAC+GGG | + | chr2_1:24001769-24001788 | None:intergenic | 40.0% | |
| !! | AAAGGAGCTTTGAGCTTGAA+AGG | + | chr2_1:24001955-24001974 | None:intergenic | 40.0% |
| TTTCAAGCTCAAAGCTCCTT+TGG | - | chr2_1:24001954-24001973 | Msa0202020:intron | 40.0% | |
| TTCAAGCTCAAAGCTCCTTT+GGG | - | chr2_1:24001955-24001974 | Msa0202020:intron | 40.0% | |
| !!! | GTTTTGGCATGTGTCGTTTA+AGG | - | chr2_1:24002072-24002091 | Msa0202020:intron | 40.0% |
| AAAACTTTCACTGCACTTGC+AGG | + | chr2_1:24002206-24002225 | None:intergenic | 40.0% | |
| AAAGTGAAGCAGGGAATGTA+TGG | - | chr2_1:24002335-24002354 | Msa0202020:CDS | 40.0% | |
| CTTGAACTCAACATAAAGGG+AGG | - | chr2_1:24002444-24002463 | Msa0202020:CDS | 40.0% | |
| ! | GTTGTGGTTCTGTTCTGTGA+AGG | + | chr2_1:23999703-23999722 | None:intergenic | 45.0% |
| AAGGAATGAGGAATGGGCAT+TGG | - | chr2_1:23999799-23999818 | Msa0202020:three_prime_UTR | 45.0% | |
| !! | ATGGGCATTGGTGAAGAAAC+AGG | - | chr2_1:23999811-23999830 | Msa0202020:three_prime_UTR | 45.0% |
| AGAAGAAGAGAGCTGAAACC+AGG | - | chr2_1:23999849-23999868 | Msa0202020:three_prime_UTR | 45.0% | |
| CTGAAACCAGGAAGCTTATC+TGG | - | chr2_1:23999861-23999880 | Msa0202020:three_prime_UTR | 45.0% | |
| TCTACTCCAGATAAGCTTCC+TGG | + | chr2_1:23999870-23999889 | None:intergenic | 45.0% | |
| TAGAGCCAAACAGTACGCTA+AGG | - | chr2_1:23999886-23999905 | Msa0202020:three_prime_UTR | 45.0% | |
| GTACTCCTTAGCGTACTGTT+TGG | + | chr2_1:23999894-23999913 | None:intergenic | 45.0% | |
| GAAGCGTGAAGCTAAGCTTA+AGG | - | chr2_1:24000039-24000058 | Msa0202020:three_prime_UTR | 45.0% | |
| CTTTGCAATTGTTGGGTGCT+TGG | - | chr2_1:24000600-24000619 | Msa0202020:intron | 45.0% | |
| GGCTAAGTGTCTCCAACAAT+TGG | - | chr2_1:24000721-24000740 | Msa0202020:CDS | 45.0% | |
| TTTGCGGTGATTATGTTGGC+AGG | + | chr2_1:24000765-24000784 | None:intergenic | 45.0% | |
| GGATGGAGAACTAAACCAGT+TGG | + | chr2_1:24001071-24001090 | None:intergenic | 45.0% | |
| ! | CGGTTGCTTTGTTCACTTTG+AGG | + | chr2_1:24001311-24001330 | None:intergenic | 45.0% |
| AACCGTGAATATGCTCCACA+GGG | - | chr2_1:24001326-24001345 | Msa0202020:intron | 45.0% | |
| AACCCTGTGGAGCATATTCA+CGG | + | chr2_1:24001331-24001350 | None:intergenic | 45.0% | |
| GTTGAGCCATATGTCACCTA+TGG | - | chr2_1:24001348-24001367 | Msa0202020:intron | 45.0% | |
| GCATACCCATAGGTGACATA+TGG | + | chr2_1:24001357-24001376 | None:intergenic | 45.0% | |
| CTACAAGCGTGGTTATGGAA+AGG | - | chr2_1:24001494-24001513 | Msa0202020:intron | 45.0% | |
| AGGAGAGATCCTATCTAGGT+CGG | + | chr2_1:24001633-24001652 | None:intergenic | 45.0% | |
| TCTGGACTGTCTCATCAAGT+TGG | + | chr2_1:24001708-24001727 | None:intergenic | 45.0% | |
| TTGCAGGTTCTTGGGAAACA+TGG | - | chr2_1:24001850-24001869 | Msa0202020:intron | 45.0% | |
| TGAAGTGAGGTCCAACAGTA+AGG | + | chr2_1:24001909-24001928 | None:intergenic | 45.0% | |
| !! | TTGTTTGCCTCTCTGAAGTG+AGG | + | chr2_1:24001922-24001941 | None:intergenic | 45.0% |
| GAGAGGCAAACAACTTCCTA+TGG | - | chr2_1:24001929-24001948 | Msa0202020:intron | 45.0% | |
| CTTTGAGCTTGAAAGGCCAT+AGG | + | chr2_1:24001948-24001967 | None:intergenic | 45.0% | |
| TTCTTCTTCATGCCACCCAA+AGG | + | chr2_1:24001973-24001992 | None:intergenic | 45.0% | |
| ! | TATGTTGAAGGTGGTGATGC+TGG | - | chr2_1:24002003-24002022 | Msa0202020:intron | 45.0% |
| TCTCTGAGTGAAAGTGAAGC+AGG | - | chr2_1:24002325-24002344 | Msa0202020:CDS | 45.0% | |
| CTCTGAGTGAAAGTGAAGCA+GGG | - | chr2_1:24002326-24002345 | Msa0202020:CDS | 45.0% | |
| !!! | TAAAAAAATATGTTTTATTT+TGG | + | chr2_1:24000187-24000206 | None:intergenic | 5.0% |
| !!! | TATAAAATATTTTAATACAA+TGG | - | chr2_1:24000922-24000941 | Msa0202020:intron | 5.0% |
| !!! | ATAAAATATTTTAATACAAT+GGG | - | chr2_1:24000923-24000942 | Msa0202020:intron | 5.0% |
| ! | CGCTAAGGAGTACGATGACT+CGG | - | chr2_1:23999901-23999920 | Msa0202020:three_prime_UTR | 50.0% |
| CGTGAAGCTAAGCTTAAGGG+TGG | - | chr2_1:24000043-24000062 | Msa0202020:three_prime_UTR | 50.0% | |
| CAACCGTGAATATGCTCCAC+AGG | - | chr2_1:24001325-24001344 | Msa0202020:intron | 50.0% | |
| TGACATATGGCTCAACCCTG+TGG | + | chr2_1:24001344-24001363 | None:intergenic | 50.0% | |
| TGAACTGTCCCGACCTAGAT+AGG | - | chr2_1:24001621-24001640 | Msa0202020:intron | 50.0% | |
| GGAGAGATCCTATCTAGGTC+GGG | + | chr2_1:24001632-24001651 | None:intergenic | 50.0% | |
| CTTGACCTATGTCCCGTGTA+TGG | - | chr2_1:24001754-24001773 | Msa0202020:intron | 50.0% | |
| TGTTGGACCTCACTTCAGAG+AGG | - | chr2_1:24001912-24001931 | Msa0202020:intron | 50.0% | |
| AAGCTCAAAGCTCCTTTGGG+TGG | - | chr2_1:24001958-24001977 | Msa0202020:intron | 50.0% | |
| ! | AAGGTGGTGATGCTGGTAAC+AGG | - | chr2_1:24002010-24002029 | Msa0202020:intron | 50.0% |
| ! | AGGTGGTGATGCTGGTAACA+GGG | - | chr2_1:24002011-24002030 | Msa0202020:intron | 50.0% |
| TGAAGGTGAACGGCGCTTCA+AGG | + | chr2_1:23999686-23999705 | None:intergenic | 55.0% | |
| GCAGCTTCTGCGATTGAGAC+AGG | - | chr2_1:24000394-24000413 | Msa0202020:intron | 55.0% | |
| GACCTATGTCCCGTGTATGG+TGG | - | chr2_1:24001757-24001776 | Msa0202020:intron | 55.0% | |
| CACCACCATACACGGGACAT+AGG | + | chr2_1:24001762-24001781 | None:intergenic | 55.0% | |
| ! | TGGTGATGCTGGTAACAGGG+AGG | - | chr2_1:24002014-24002033 | Msa0202020:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 23999668 | 24002542 | 23999668 | ID=Msa0202020;Name=Msa0202020 |
| chr2_1 | mRNA | 23999668 | 24002542 | 23999668 | ID=Msa0202020-mRNA-1;Parent=Msa0202020;Name=Msa0202020-mRNA-1;_AED=0.08;_eAED=0.08;_QI=75|1|1|1|1|1|6|471|244 |
| chr2_1 | exon | 23999668 | 24000354 | 23999668 | ID=Msa0202020-mRNA-1:exon:9303;Parent=Msa0202020-mRNA-1 |
| chr2_1 | exon | 24000647 | 24000749 | 24000647 | ID=Msa0202020-mRNA-1:exon:9302;Parent=Msa0202020-mRNA-1 |
| chr2_1 | exon | 24000840 | 24000919 | 24000840 | ID=Msa0202020-mRNA-1:exon:9301;Parent=Msa0202020-mRNA-1 |
| chr2_1 | exon | 24001795 | 24001852 | 24001795 | ID=Msa0202020-mRNA-1:exon:9300;Parent=Msa0202020-mRNA-1 |
| chr2_1 | exon | 24002094 | 24002191 | 24002094 | ID=Msa0202020-mRNA-1:exon:9299;Parent=Msa0202020-mRNA-1 |
| chr2_1 | exon | 24002288 | 24002542 | 24002288 | ID=Msa0202020-mRNA-1:exon:9298;Parent=Msa0202020-mRNA-1 |
| chr2_1 | five_prime_UTR | 24002468 | 24002542 | 24002468 | ID=Msa0202020-mRNA-1:five_prime_utr;Parent=Msa0202020-mRNA-1 |
| chr2_1 | CDS | 24002288 | 24002467 | 24002288 | ID=Msa0202020-mRNA-1:cds;Parent=Msa0202020-mRNA-1 |
| chr2_1 | CDS | 24002094 | 24002191 | 24002094 | ID=Msa0202020-mRNA-1:cds;Parent=Msa0202020-mRNA-1 |
| chr2_1 | CDS | 24001795 | 24001852 | 24001795 | ID=Msa0202020-mRNA-1:cds;Parent=Msa0202020-mRNA-1 |
| chr2_1 | CDS | 24000840 | 24000919 | 24000840 | ID=Msa0202020-mRNA-1:cds;Parent=Msa0202020-mRNA-1 |
| chr2_1 | CDS | 24000647 | 24000749 | 24000647 | ID=Msa0202020-mRNA-1:cds;Parent=Msa0202020-mRNA-1 |
| chr2_1 | CDS | 24000139 | 24000354 | 24000139 | ID=Msa0202020-mRNA-1:cds;Parent=Msa0202020-mRNA-1 |
| chr2_1 | three_prime_UTR | 23999668 | 24000138 | 23999668 | ID=Msa0202020-mRNA-1:three_prime_utr;Parent=Msa0202020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
