AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0729510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0729510 MtrunA17_Chr3g0139321 96.486 313 11 0 5 317 1 313 0.0 595
Msa0729510 MtrunA17_Chr2g0305311 91.429 70 5 1 317 386 364 432 2.95e-34 132
Msa0729510 MtrunA17_Chr6g0467141 74.286 70 18 0 317 386 23 92 6.22e-29 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0729510 AT4G31340.2 57.244 283 117 2 35 317 35 313 1.27e-103 313
Msa0729510 AT4G31340.1 57.244 283 117 2 35 317 35 313 2.23e-103 313
Msa0729510 AT2G24420.1 50.968 310 137 3 13 317 17 316 3.78e-99 302
Msa0729510 AT2G24420.2 50.968 310 137 3 13 317 17 316 3.78e-99 302
Msa0729510 AT4G30090.1 27.070 314 146 8 44 350 44 281 2.73e-21 95.1

Find 79 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAATTGAGTTGATCTAAT+TGG 0.198323 5_1:+36843094 None:intergenic
AAGTAACGAGGGAGAAAATT+AGG 0.224956 5_1:+36843166 None:intergenic
AAAAGGCACAAGCTGGAAAA+TGG 0.236033 5_1:-36840646 Msa0729510:CDS
TCCTGGATACGTGCGTTCTA+TGG 0.251099 5_1:-36839972 Msa0729510:CDS
GAAGCATTTGTCAAAGTGTT+TGG 0.294876 5_1:-36840004 Msa0729510:CDS
TATCTTAAGTGAATCAATTT+CGG 0.298240 5_1:+36839856 None:intergenic
GAAACTTATACCTGATAATA+AGG 0.301355 5_1:+36840209 None:intergenic
AACACAAGAATTGAAGAAAA+AGG 0.318070 5_1:-36842773 Msa0729510:CDS
GAATGAGGTTGCTTCTCTTC+AGG 0.323946 5_1:-36842686 Msa0729510:intron
ACTTGCTCCCCACTTGAATA+AGG 0.331530 5_1:-36840249 Msa0729510:CDS
GAATGCTACTCAACTTATCT+TGG 0.345760 5_1:+36842719 None:intergenic
TTGGATTGATACCGAGAGAT+TGG 0.365345 5_1:+36843067 None:intergenic
CTTGCTCAGCTCTATTGCTT+TGG 0.379031 5_1:+36841364 None:intergenic
ATGGTGCTTGGCTTCCTCCT+TGG 0.385003 5_1:-36840999 Msa0729510:CDS
CCCATAGAACGCACGTATCC+AGG 0.399274 5_1:+36839971 None:intergenic
ATGTGTAGATCCTTATTATC+AGG 0.406758 5_1:-36840219 Msa0729510:intron
TACGTGCGTTCTATGGGACT+TGG 0.435532 5_1:-36839965 Msa0729510:CDS
GTCATTGGATGCCGTGGAGC+AGG 0.441421 5_1:-36842502 Msa0729510:CDS
AGAAAGTGAACTGGGAATCT+CGG 0.463402 5_1:-36842320 Msa0729510:CDS
AAAGGCACAAGCTGGAAAAT+GGG 0.463620 5_1:-36840645 Msa0729510:CDS
GACCACTGTTCTTTCACAGC+TGG 0.466702 5_1:+36840353 None:intergenic
TAGAACGGCGTCGTCCTTTG+AGG 0.467353 5_1:-36839906 Msa0729510:CDS
TTCGATGGAAACATCGGCTT+CGG 0.467981 5_1:+36843143 None:intergenic
GTTGGAAGTGATATCTCAAA+AGG 0.468095 5_1:-36840824 Msa0729510:intron
TTCACAAGTTGATATCTTGA+AGG 0.472450 5_1:-36839829 None:intergenic
AGTCCGTCGCTGAGAGTCAT+TGG 0.476512 5_1:-36840867 Msa0729510:CDS
TACTTCTCACCGTGCTAGAA+CGG 0.478897 5_1:-36839921 Msa0729510:CDS
AAAACAGTGAGAAAGTGAAC+TGG 0.480727 5_1:-36842329 Msa0729510:CDS
GATACCGAGAGATTGGATCT+TGG 0.482735 5_1:+36843074 None:intergenic
AGTAACGAGGGAGAAAATTA+GGG 0.483348 5_1:+36843167 None:intergenic
CCTGGATACGTGCGTTCTAT+GGG 0.486306 5_1:-36839971 Msa0729510:CDS
AAATTGATTCACTTAAGATA+AGG 0.491620 5_1:-36839853 Msa0729510:CDS
GAAGTCAGTGCTTGCACATG+AGG 0.495088 5_1:+36840308 None:intergenic
GAAAGTGAACTGGGAATCTC+GGG 0.506911 5_1:-36842319 Msa0729510:CDS
CATTCAATCCTTGCAGAATG+AGG 0.508270 5_1:-36842701 Msa0729510:CDS
ATGATCAGACTCATGGTGCT+TGG 0.513875 5_1:-36841011 Msa0729510:intron
TATTTAGGAAGAAATGTTGA+AGG 0.522472 5_1:-36841405 Msa0729510:intron
TGCCGTGGAGCAGGTTGGAA+AGG 0.526789 5_1:-36842493 Msa0729510:CDS
TGCCGATGAACTACAGAAGC+AGG 0.539163 5_1:-36842460 Msa0729510:intron
CATCCTCTCATTAGCCTCAA+AGG 0.540810 5_1:+36839892 None:intergenic
TGAACATGGGAAGCCTCTGT+TGG 0.550076 5_1:-36840842 Msa0729510:CDS
GAGAGTCATTGGAATGAACA+TGG 0.556843 5_1:-36840856 Msa0729510:CDS
AAAGCGAAGACGAAAAGCTT+CGG 0.557023 5_1:+36843198 None:intergenic
TGAAGTTTGCAAGTCGTCAA+AGG 0.566379 5_1:-36840276 Msa0729510:CDS
ACAGGTTCAAAAGATAAATG+AGG 0.567365 5_1:-36841572 Msa0729510:intron
ACGTGCGTTCTATGGGACTT+GGG 0.568110 5_1:-36839964 Msa0729510:CDS
GTGTTTGGAAAAGAACATCC+TGG 0.570578 5_1:-36839989 Msa0729510:CDS
CATCGGCTTCGGAAGTAACG+AGG 0.570944 5_1:+36843154 None:intergenic
AGAATCTTCGATGGAAACAT+CGG 0.571464 5_1:+36843137 None:intergenic
AAAAGGGTCATTGGATGCCG+TGG 0.580418 5_1:-36842508 Msa0729510:CDS
GACCTGCTTCTGTAGTTCAT+CGG 0.598679 5_1:+36842458 None:intergenic
AAAATGGGCTGAACCTCATG+TGG 0.599477 5_1:-36840630 Msa0729510:CDS
TGAGATATCACTTCCAACAG+AGG 0.601782 5_1:+36840829 None:intergenic
AGGACGACGCCGTTCTAGCA+CGG 0.610153 5_1:+36839912 None:intergenic
TTGGATGCCGTGGAGCAGGT+TGG 0.610245 5_1:-36842498 Msa0729510:CDS
GAGGGAGAAAATTAGGGCAA+CGG 0.612042 5_1:+36843173 None:intergenic
AATTCCAAGATCCAATCTCT+CGG 0.613050 5_1:-36843078 Msa0729510:intron
AGAGGAATCAGAATCTTCGA+TGG 0.619773 5_1:+36843128 None:intergenic
TGAGAAGTAGAAATTTGAGA+TGG 0.623920 5_1:+36839935 None:intergenic
TGATTTGAACTCAAAACTAG+AGG 0.624974 5_1:-36842271 Msa0729510:CDS
AAACAGTGAGAAAGTGAACT+GGG 0.625922 5_1:-36842328 Msa0729510:CDS
AATGTTGAAGGCAAAGCTAG+AGG 0.629492 5_1:-36841393 Msa0729510:CDS
GCGAAGACGAAAAGCTTCGG+AGG 0.632276 5_1:+36843201 None:intergenic
TAATTGGATCTTAAGAGCAG+AGG 0.640351 5_1:+36843110 None:intergenic
TGTACACTATATTCGTAGCA+AGG 0.642313 5_1:-36840971 Msa0729510:intron
AGAAGCAACCTCATTCTGCA+AGG 0.645724 5_1:+36842693 None:intergenic
ACGTGCTCTTAAAGTTGCCG+AGG 0.655385 5_1:-36841521 Msa0729510:intron
ATTCCAATGACTCTCAGCGA+CGG 0.657060 5_1:+36840864 None:intergenic
ATATAGTGTACAGCAAGCCA+AGG 0.657714 5_1:+36840982 None:intergenic
AGCCTTTCCAACCTGCTCCA+CGG 0.658084 5_1:+36842491 None:intergenic
ATCGGCTTCGGAAGTAACGA+GGG 0.658576 5_1:+36843155 None:intergenic
GGTGTTAATGATCAGACTCA+TGG 0.658662 5_1:-36841018 Msa0729510:intron
TAGTGTACAGCAAGCCAAGG+AGG 0.659126 5_1:+36840985 None:intergenic
CAAAGCAATAGAGCTGAGCA+AGG 0.661315 5_1:-36841363 Msa0729510:intron
AGAGTCATTGGAATGAACAT+GGG 0.671207 5_1:-36840855 Msa0729510:CDS
CGTCCTTTGAGGCTAATGAG+AGG 0.681698 5_1:-36839895 Msa0729510:CDS
GTGGTCTGTGGTGAAAACAA+AGG 0.693790 5_1:-36840336 Msa0729510:CDS
TGTGAAAGAACAGTGGTCTG+TGG 0.702105 5_1:-36840348 Msa0729510:CDS
TTCCAGCTGTGAAAGAACAG+TGG 0.708355 5_1:-36840355 Msa0729510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAAAAAATAATAATTTTGAA+GGG + chr5_1:36840521-36840540 None:intergenic 10.0%
!!! ATATAAGAATTTTTTTTACT+AGG + chr5_1:36841914-36841933 None:intergenic 10.0%
!! AAAATGTATTTCTTATATAA+AGG - chr5_1:36842884-36842903 Msa0729510:intron 10.0%
!! AAATGCTTCAAAAATAATAA+AGG + chr5_1:36840436-36840455 None:intergenic 15.0%
!!! TTTATTATTTTTGAAGCATT+TGG - chr5_1:36840435-36840454 Msa0729510:intron 15.0%
!!! TTATTATTTTTGAAGCATTT+GGG - chr5_1:36840436-36840455 Msa0729510:intron 15.0%
!!! GGAAAAAATAATAATTTTGA+AGG + chr5_1:36840522-36840541 None:intergenic 15.0%
!!! CTTAATTTTTTTTCATTAAG+TGG + chr5_1:36841345-36841364 None:intergenic 15.0%
!!! TATCAAAACATAATTTTGTT+AGG - chr5_1:36841428-36841447 Msa0729510:intron 15.0%
!!! TTCTATTGATATTCTTATTT+AGG - chr5_1:36841636-36841655 Msa0729510:intron 15.0%
!!! TATTTTTATAGTAAACTATC+AGG + chr5_1:36841964-36841983 None:intergenic 15.0%
!!! GTACTATATGATATTTATTT+TGG - chr5_1:36842254-36842273 Msa0729510:intron 15.0%
!! ATTATTATGATTAAAATGAG+AGG + chr5_1:36842951-36842970 None:intergenic 15.0%
!!! AATGATGATAATTGAGATTT+TGG + chr5_1:36840011-36840030 None:intergenic 20.0%
!!! TTATTTTTTCCTCAGAAAAA+AGG - chr5_1:36840531-36840550 Msa0729510:intron 20.0%
!!! TATTTTTTCCTCAGAAAAAA+GGG - chr5_1:36840532-36840551 Msa0729510:intron 20.0%
!!! TTTTTTTTCATTAAGTGGTT+AGG + chr5_1:36841340-36841359 None:intergenic 20.0%
!! AATAAACTGACATTATTAGA+TGG + chr5_1:36841409-36841428 None:intergenic 20.0%
!! TAAAAAGATTACATGGTTTA+GGG + chr5_1:36841739-36841758 None:intergenic 20.0%
!! TTAAAAAGATTACATGGTTT+AGG + chr5_1:36841740-36841759 None:intergenic 20.0%
!! CAACATTTAAAAAGATTACA+TGG + chr5_1:36841746-36841765 None:intergenic 20.0%
!!! ATAATCATGGATAACTTTTA+AGG + chr5_1:36841784-36841803 None:intergenic 20.0%
!! TTCATCTATATACAAGAAAA+TGG + chr5_1:36841858-36841877 None:intergenic 20.0%
!! ATTCTTATATTATGTGACAT+TGG - chr5_1:36841924-36841943 Msa0729510:intron 20.0%
!! TAAAAATAAACTATCAGACA+AGG - chr5_1:36841976-36841995 Msa0729510:intron 20.0%
!!! TTTTATTAATTGATGCTTAC+TGG - chr5_1:36842017-36842036 Msa0729510:intron 20.0%
!! ATTATTAGAAGATGTGAATA+AGG + chr5_1:36842151-36842170 None:intergenic 20.0%
!! GTTAAAATACAGAAATCAAT+AGG + chr5_1:36842360-36842379 None:intergenic 20.0%
!!! TCCTAGTTTTTTAAATACTT+GGG - chr5_1:36842625-36842644 Msa0729510:intron 20.0%
!! TATCTTAAGTGAATCAATTT+CGG + chr5_1:36843203-36843222 None:intergenic 20.0%
!!! AAATTGATTCACTTAAGATA+AGG - chr5_1:36843203-36843222 Msa0729510:CDS 20.0%
! TCAATTAGTTGAAATTACTG+AGG - chr5_1:36840139-36840158 Msa0729510:intron 25.0%
!! AATTACTGAGGAAATTTTTG+TGG - chr5_1:36840151-36840170 Msa0729510:intron 25.0%
! GGCTAGTAATTTACAAATTT+AGG - chr5_1:36840172-36840191 Msa0729510:intron 25.0%
! AACACAAGAATTGAAGAAAA+AGG - chr5_1:36840283-36840302 Msa0729510:CDS 25.0%
! AAATAACAAATAATAGCGAG+TGG + chr5_1:36840491-36840510 None:intergenic 25.0%
!! ATGAATCTTTTTCTCTAACT+TGG + chr5_1:36840766-36840785 None:intergenic 25.0%
!! TTATTCACATTGCCTATTTT+GGG - chr5_1:36841242-36841261 Msa0729510:intron 25.0%
! TATTTAGGAAGAAATGTTGA+AGG - chr5_1:36841651-36841670 Msa0729510:intron 25.0%
! TGAGCAAGGTAATAATTTAT+TGG - chr5_1:36841707-36841726 Msa0729510:intron 25.0%
! AAAAAGATTACATGGTTTAG+GGG + chr5_1:36841738-36841757 None:intergenic 25.0%
! TCTTGTATATAGATGAATGA+AGG - chr5_1:36841861-36841880 Msa0729510:intron 25.0%
!! TATTATGTGACATTGGTAAT+TGG - chr5_1:36841931-36841950 Msa0729510:intron 25.0%
! CTTCAATAAATTATAGATCC+AGG - chr5_1:36842304-36842323 Msa0729510:CDS 25.0%
!! CTTTCATACTTTTGATCTTT+AGG - chr5_1:36842482-36842501 Msa0729510:CDS 25.0%
!!! CTCCTAGTTTTTTAAATACT+TGG - chr5_1:36842624-36842643 Msa0729510:intron 25.0%
! GAAACTTATACCTGATAATA+AGG + chr5_1:36842850-36842869 None:intergenic 25.0%
! ATTATGATTAAAATGAGAGG+AGG + chr5_1:36842948-36842967 None:intergenic 25.0%
!!! ATGATAATTTGTTAAGATGC+AGG - chr5_1:36842988-36843007 Msa0729510:intron 25.0%
!! TGGAATTGAGTTGATCTAAT+TGG + chr5_1:36839965-36839984 None:intergenic 30.0%
!! CATCGATTTAGGAAAAAACT+TGG + chr5_1:36840099-36840118 None:intergenic 30.0%
! TAGTCTGAAATTCTTAATGC+AGG - chr5_1:36840674-36840693 Msa0729510:intron 30.0%
TGATTTGAACTCAAAACTAG+AGG - chr5_1:36840785-36840804 Msa0729510:intron 30.0%
CAGATAAAAAAAGTTAGCAG+AGG + chr5_1:36841187-36841206 None:intergenic 30.0%
! CTTATTCACATTGCCTATTT+TGG - chr5_1:36841241-36841260 Msa0729510:intron 30.0%
! TCATTTATCTTTTGAACCTG+TGG + chr5_1:36841485-36841504 None:intergenic 30.0%
ACAGGTTCAAAAGATAAATG+AGG - chr5_1:36841484-36841503 Msa0729510:intron 30.0%
!!! TAACTTTTAAGGTTTTCTGG+TGG + chr5_1:36841773-36841792 None:intergenic 30.0%
!!! GGATAACTTTTAAGGTTTTC+TGG + chr5_1:36841776-36841795 None:intergenic 30.0%
TGAAGAAGAAGAATTAAACC+TGG + chr5_1:36842325-36842344 None:intergenic 30.0%
!!! GTTTTAATTGTTTCCACATG+AGG + chr5_1:36842442-36842461 None:intergenic 30.0%
GCCCAAGTATTTAAAAAACT+AGG + chr5_1:36842629-36842648 None:intergenic 30.0%
CAATTCTTCAGTTGAAAACA+GGG + chr5_1:36842679-36842698 None:intergenic 30.0%
! CTGTTTTCAACTGAAGAATT+GGG - chr5_1:36842678-36842697 Msa0729510:intron 30.0%
!! TTCTTTTGCCTTATTCAAGT+GGG + chr5_1:36842818-36842837 None:intergenic 30.0%
!! ATTCTTTTGCCTTATTCAAG+TGG + chr5_1:36842819-36842838 None:intergenic 30.0%
ATGTGTAGATCCTTATTATC+AGG - chr5_1:36842837-36842856 Msa0729510:intron 30.0%
AGGTATAAGTTTCTTCATTG+TGG - chr5_1:36842857-36842876 Msa0729510:intron 30.0%
GGTATAAGTTTCTTCATTGT+GGG - chr5_1:36842858-36842877 Msa0729510:intron 30.0%
GGATAGAAAACAAACTAGAA+AGG + chr5_1:36842910-36842929 None:intergenic 30.0%
TGAGAAGTAGAAATTTGAGA+TGG + chr5_1:36843124-36843143 None:intergenic 30.0%
AGTAACGAGGGAGAAAATTA+GGG + chr5_1:36839892-36839911 None:intergenic 35.0%
AAGTAACGAGGGAGAAAATT+AGG + chr5_1:36839893-36839912 None:intergenic 35.0%
AGAATCTTCGATGGAAACAT+CGG + chr5_1:36839922-36839941 None:intergenic 35.0%
TAATTGGATCTTAAGAGCAG+AGG + chr5_1:36839949-36839968 None:intergenic 35.0%
AATTCCAAGATCCAATCTCT+CGG - chr5_1:36839978-36839997 Msa0729510:CDS 35.0%
TTCCTAAATCGATGTTACTG+TGG - chr5_1:36840105-36840124 Msa0729510:intron 35.0%
! TCTGTGAATCGTGATTTTTG+TGG - chr5_1:36840205-36840224 Msa0729510:intron 35.0%
GAATGCTACTCAACTTATCT+TGG + chr5_1:36840340-36840359 None:intergenic 35.0%
AGGTGTACAATTCCTAAAGA+GGG + chr5_1:36840416-36840435 None:intergenic 35.0%
AAGGTGTACAATTCCTAAAG+AGG + chr5_1:36840417-36840436 None:intergenic 35.0%
AAAACAGTGAGAAAGTGAAC+TGG - chr5_1:36840727-36840746 Msa0729510:intron 35.0%
AAACAGTGAGAAAGTGAACT+GGG - chr5_1:36840728-36840747 Msa0729510:intron 35.0%
ACACACACACAAACTAGAAT+AGG + chr5_1:36840881-36840900 None:intergenic 35.0%
AAGAAGACACTAAAGCAATG+AGG + chr5_1:36841076-36841095 None:intergenic 35.0%
AGGCAATGTGAATAAGTTGT+GGG + chr5_1:36841237-36841256 None:intergenic 35.0%
TAGGCAATGTGAATAAGTTG+TGG + chr5_1:36841238-36841257 None:intergenic 35.0%
AATCATTACACCTGCACATT+TGG + chr5_1:36841302-36841321 None:intergenic 35.0%
! TTTTCTTGCCAATGTTGTGT+AGG - chr5_1:36841582-36841601 Msa0729510:intron 35.0%
CACACTGTTGCTAATAATCA+TGG + chr5_1:36841797-36841816 None:intergenic 35.0%
CATGATTATTAGCAACAGTG+TGG - chr5_1:36841795-36841814 Msa0729510:intron 35.0%
CTATCAGACAAGGTATATTG+TGG - chr5_1:36841986-36842005 Msa0729510:intron 35.0%
TGTACACTATATTCGTAGCA+AGG - chr5_1:36842085-36842104 Msa0729510:intron 35.0%
AGAGTCATTGGAATGAACAT+GGG - chr5_1:36842201-36842220 Msa0729510:intron 35.0%
GTTGGAAGTGATATCTCAAA+AGG - chr5_1:36842232-36842251 Msa0729510:intron 35.0%
ATTCTAGGCCCTAGAAAAAA+AGG - chr5_1:36842393-36842412 Msa0729510:intron 35.0%
!!! AGCTTGTGCCTTTTTTTCTA+GGG + chr5_1:36842404-36842423 None:intergenic 35.0%
CGGGTAAAACAAACAAATTG+TGG + chr5_1:36842555-36842574 None:intergenic 35.0%
!!! CAATTTGTTTGTTTTACCCG+TGG - chr5_1:36842555-36842574 Msa0729510:intron 35.0%
!! CTGATAGCTTGTTAACCATT+CGG - chr5_1:36842580-36842599 Msa0729510:intron 35.0%
CCAATTCTTCAGTTGAAAAC+AGG + chr5_1:36842680-36842699 None:intergenic 35.0%
! CCTGTTTTCAACTGAAGAAT+TGG - chr5_1:36842677-36842696 Msa0729510:intron 35.0%
!! TCTTTTGCCTTATTCAAGTG+GGG + chr5_1:36842817-36842836 None:intergenic 35.0%
TTTCTATCCATAGCTCCATA+TGG - chr5_1:36842921-36842940 Msa0729510:intron 35.0%
! GAAGCATTTGTCAAAGTGTT+TGG - chr5_1:36843052-36843071 Msa0729510:intron 35.0%
AAAGCGAAGACGAAAAGCTT+CGG + chr5_1:36839861-36839880 None:intergenic 40.0%
AGAGGAATCAGAATCTTCGA+TGG + chr5_1:36839931-36839950 None:intergenic 40.0%
TTGGATTGATACCGAGAGAT+TGG + chr5_1:36839992-36840011 None:intergenic 40.0%
!! CACCACAGTAACATCGATTT+AGG + chr5_1:36840110-36840129 None:intergenic 40.0%
CATTCAATCCTTGCAGAATG+AGG - chr5_1:36840355-36840374 Msa0729510:CDS 40.0%
! CTTTTCAGTAGACCCTCTTT+AGG - chr5_1:36840401-36840420 Msa0729510:intron 40.0%
TCCTCAGAAAAAAGGGTCAT+TGG - chr5_1:36840539-36840558 Msa0729510:intron 40.0%
!!! TCCAATGACCCTTTTTTCTG+AGG + chr5_1:36840543-36840562 None:intergenic 40.0%
AGAAAGTGAACTGGGAATCT+CGG - chr5_1:36840736-36840755 Msa0729510:intron 40.0%
GAGGATGTAAGTTGTACACT+TGG - chr5_1:36840804-36840823 Msa0729510:intron 40.0%
! TTTCTTTTCCCCTCTTGTCT+TGG - chr5_1:36841095-36841114 Msa0729510:intron 40.0%
! AAGTTGTGGGAGTGTAGTAA+AGG + chr5_1:36841224-36841243 None:intergenic 40.0%
CAACAGCAATGACCCAAAAT+AGG + chr5_1:36841257-36841276 None:intergenic 40.0%
TTATCACTAGCCAAATGTGC+AGG - chr5_1:36841289-36841308 Msa0729510:intron 40.0%
TTGAGTAGTGTATTCTCCAC+AGG - chr5_1:36841466-36841485 Msa0729510:intron 40.0%
!! TAAGAGCACGTTCAGTTTTG+CGG + chr5_1:36841526-36841545 None:intergenic 40.0%
AATGTTGAAGGCAAAGCTAG+AGG - chr5_1:36841663-36841682 Msa0729510:intron 40.0%
GGTGTTAATGATCAGACTCA+TGG - chr5_1:36842038-36842057 Msa0729510:intron 40.0%
ATATAGTGTACAGCAAGCCA+AGG + chr5_1:36842077-36842096 None:intergenic 40.0%
GAGAGTCATTGGAATGAACA+TGG - chr5_1:36842200-36842219 Msa0729510:intron 40.0%
TGAGATATCACTTCCAACAG+AGG + chr5_1:36842230-36842249 None:intergenic 40.0%
! ACGCTTTTCCTATGCATTCT+AGG - chr5_1:36842378-36842397 Msa0729510:intron 40.0%
!!! CAGCTTGTGCCTTTTTTTCT+AGG + chr5_1:36842405-36842424 None:intergenic 40.0%
! CTAGAAAAAAAGGCACAAGC+TGG - chr5_1:36842403-36842422 Msa0729510:intron 40.0%
! AAAAGGCACAAGCTGGAAAA+TGG - chr5_1:36842410-36842429 Msa0729510:intron 40.0%
! AAAGGCACAAGCTGGAAAAT+GGG - chr5_1:36842411-36842430 Msa0729510:intron 40.0%
AAATCCACCATCTAACCACA+GGG + chr5_1:36842525-36842544 None:intergenic 40.0%
TTAACAAGCTATCAGGACCA+CGG + chr5_1:36842575-36842594 None:intergenic 40.0%
CGAATGGTTAACAAGCTATC+AGG + chr5_1:36842582-36842601 None:intergenic 40.0%
ACCATTCGGAGTTTCAACAT+TGG - chr5_1:36842594-36842613 Msa0729510:intron 40.0%
TGAAGTTTGCAAGTCGTCAA+AGG - chr5_1:36842780-36842799 Msa0729510:CDS 40.0%
AAAATGAGAGGAGGACCATA+TGG + chr5_1:36842939-36842958 None:intergenic 40.0%
GTGTTTGGAAAAGAACATCC+TGG - chr5_1:36843067-36843086 Msa0729510:intron 40.0%
GAGGGAGAAAATTAGGGCAA+CGG + chr5_1:36839886-36839905 None:intergenic 45.0%
!! TTCGATGGAAACATCGGCTT+CGG + chr5_1:36839916-36839935 None:intergenic 45.0%
GATACCGAGAGATTGGATCT+TGG + chr5_1:36839985-36840004 None:intergenic 45.0%
AGAAGCAACCTCATTCTGCA+AGG + chr5_1:36840366-36840385 None:intergenic 45.0%
GAATGAGGTTGCTTCTCTTC+AGG - chr5_1:36840370-36840389 Msa0729510:intron 45.0%
GACCTGCTTCTGTAGTTCAT+CGG + chr5_1:36840601-36840620 None:intergenic 45.0%
GAAAGTGAACTGGGAATCTC+GGG - chr5_1:36840737-36840756 Msa0729510:intron 45.0%
AGAAACCACCAAGACAAGAG+GGG + chr5_1:36841106-36841125 None:intergenic 45.0%
CAGAAACCACCAAGACAAGA+GGG + chr5_1:36841107-36841126 None:intergenic 45.0%
TGGTTTCTGCTGAAAGTTGC+TGG - chr5_1:36841118-36841137 Msa0729510:intron 45.0%
! TTGTGGGAGTGTAGTAAAGG+TGG + chr5_1:36841221-36841240 None:intergenic 45.0%
TGTGCAGGTGTAATGATTCG+TGG - chr5_1:36841304-36841323 Msa0729510:intron 45.0%
TAATGATTCGTGGCCGCTAT+GGG - chr5_1:36841314-36841333 Msa0729510:intron 45.0%
TTAAGTGGTTAGGCCCATAG+CGG + chr5_1:36841330-36841349 None:intergenic 45.0%
ACTCACAGTCTCACATACCT+CGG + chr5_1:36841555-36841574 None:intergenic 45.0%
CTTGCCAATGTTGTGTAGGA+TGG - chr5_1:36841586-36841605 Msa0729510:intron 45.0%
ACCACCATCCTACACAACAT+TGG + chr5_1:36841593-36841612 None:intergenic 45.0%
CTTGCTCAGCTCTATTGCTT+TGG + chr5_1:36841695-36841714 None:intergenic 45.0%
CAAAGCAATAGAGCTGAGCA+AGG - chr5_1:36841693-36841712 Msa0729510:intron 45.0%
ATGATCAGACTCATGGTGCT+TGG - chr5_1:36842045-36842064 Msa0729510:intron 45.0%
ATTCCAATGACTCTCAGCGA+CGG + chr5_1:36842195-36842214 None:intergenic 45.0%
!! TTCTAGGGCCTAGAATGCAT+AGG + chr5_1:36842389-36842408 None:intergenic 45.0%
!! AAAATGGGCTGAACCTCATG+TGG - chr5_1:36842426-36842445 Msa0729510:intron 45.0%
CAAATCCACCATCTAACCAC+AGG + chr5_1:36842526-36842545 None:intergenic 45.0%
TAACAAGCTATCAGGACCAC+GGG + chr5_1:36842574-36842593 None:intergenic 45.0%
GCCAATGTTGAAACTCCGAA+TGG + chr5_1:36842598-36842617 None:intergenic 45.0%
TTCGGAGTTTCAACATTGGC+AGG - chr5_1:36842598-36842617 Msa0729510:intron 45.0%
TTCCAGCTGTGAAAGAACAG+TGG - chr5_1:36842701-36842720 Msa0729510:CDS 45.0%
TGTGAAAGAACAGTGGTCTG+TGG - chr5_1:36842708-36842727 Msa0729510:CDS 45.0%
GTGGTCTGTGGTGAAAACAA+AGG - chr5_1:36842720-36842739 Msa0729510:CDS 45.0%
ACTTGCTCCCCACTTGAATA+AGG - chr5_1:36842807-36842826 Msa0729510:intron 45.0%
TACTTCTCACCGTGCTAGAA+CGG - chr5_1:36843135-36843154 Msa0729510:CDS 45.0%
! CATCCTCTCATTAGCCTCAA+AGG + chr5_1:36843167-36843186 None:intergenic 45.0%
! ATCGGCTTCGGAAGTAACGA+GGG + chr5_1:36839904-36839923 None:intergenic 50.0%
AAAAGGGTCATTGGATGCCG+TGG - chr5_1:36840548-36840567 Msa0729510:intron 50.0%
TGCCGATGAACTACAGAAGC+AGG - chr5_1:36840596-36840615 Msa0729510:intron 50.0%
!! TACGAGCATTGAGCATGGCA+AGG + chr5_1:36841037-36841056 None:intergenic 50.0%
CTCAATGCTCGTACCTGGAA+GGG - chr5_1:36841044-36841063 Msa0729510:intron 50.0%
! CTTTTCCCCTCTTGTCTTGG+TGG - chr5_1:36841098-36841117 Msa0729510:intron 50.0%
GCAGAAACCACCAAGACAAG+AGG + chr5_1:36841108-36841127 None:intergenic 50.0%
GTAATGATTCGTGGCCGCTA+TGG - chr5_1:36841313-36841332 Msa0729510:intron 50.0%
ACGTGCTCTTAAAGTTGCCG+AGG - chr5_1:36841535-36841554 Msa0729510:CDS 50.0%
GCCAATGTTGTGTAGGATGG+TGG - chr5_1:36841589-36841608 Msa0729510:intron 50.0%
TAGTGTACAGCAAGCCAAGG+AGG + chr5_1:36842074-36842093 None:intergenic 50.0%
TGAACATGGGAAGCCTCTGT+TGG - chr5_1:36842214-36842233 Msa0729510:intron 50.0%
ACTGCAATTACTGTGCCCTG+TGG - chr5_1:36842507-36842526 Msa0729510:CDS 50.0%
TACTGTGCCCTGTGGTTAGA+TGG - chr5_1:36842515-36842534 Msa0729510:intron 50.0%
GACCACTGTTCTTTCACAGC+TGG + chr5_1:36842706-36842725 None:intergenic 50.0%
GAAGTCAGTGCTTGCACATG+AGG + chr5_1:36842751-36842770 None:intergenic 50.0%
AGGAGGACCATATGGAGCTA+TGG + chr5_1:36842931-36842950 None:intergenic 50.0%
TCCTGGATACGTGCGTTCTA+TGG - chr5_1:36843084-36843103 Msa0729510:CDS 50.0%
CCTGGATACGTGCGTTCTAT+GGG - chr5_1:36843085-36843104 Msa0729510:CDS 50.0%
TACGTGCGTTCTATGGGACT+TGG - chr5_1:36843091-36843110 Msa0729510:CDS 50.0%
ACGTGCGTTCTATGGGACTT+GGG - chr5_1:36843092-36843111 Msa0729510:CDS 50.0%
!! CGTCCTTTGAGGCTAATGAG+AGG - chr5_1:36843161-36843180 Msa0729510:CDS 50.0%
GCGAAGACGAAAAGCTTCGG+AGG + chr5_1:36839858-36839877 None:intergenic 55.0%
!! CATCGGCTTCGGAAGTAACG+AGG + chr5_1:36839905-36839924 None:intergenic 55.0%
AGCCTTTCCAACCTGCTCCA+CGG + chr5_1:36840568-36840587 None:intergenic 55.0%
!! CCAGGTACGAGCATTGAGCA+TGG + chr5_1:36841042-36841061 None:intergenic 55.0%
CCATGCTCAATGCTCGTACC+TGG - chr5_1:36841039-36841058 Msa0729510:intron 55.0%
GCTCAATGCTCGTACCTGGA+AGG - chr5_1:36841043-36841062 Msa0729510:intron 55.0%
AATGAGGACGATGCCCTTCC+AGG + chr5_1:36841060-36841079 None:intergenic 55.0%
ATGGTGCTTGGCTTCCTCCT+TGG - chr5_1:36842057-36842076 Msa0729510:intron 55.0%
AGTCCGTCGCTGAGAGTCAT+TGG - chr5_1:36842189-36842208 Msa0729510:intron 55.0%
TGTGCCCTGTGGTTAGATGG+TGG - chr5_1:36842518-36842537 Msa0729510:intron 55.0%
CCCATAGAACGCACGTATCC+AGG + chr5_1:36843088-36843107 None:intergenic 55.0%
TAGAACGGCGTCGTCCTTTG+AGG - chr5_1:36843150-36843169 Msa0729510:CDS 55.0%
GTCATTGGATGCCGTGGAGC+AGG - chr5_1:36840554-36840573 Msa0729510:intron 60.0%
TTGGATGCCGTGGAGCAGGT+TGG - chr5_1:36840558-36840577 Msa0729510:intron 60.0%
! TGCCGTGGAGCAGGTTGGAA+AGG - chr5_1:36840563-36840582 Msa0729510:intron 60.0%
AGGACGACGCCGTTCTAGCA+CGG + chr5_1:36843147-36843166 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 36839832 36843246 36839832 ID=Msa0729510;Name=Msa0729510
chr5_1 mRNA 36839832 36843246 36839832 ID=Msa0729510-mRNA-1;Parent=Msa0729510;Name=Msa0729510-mRNA-1;_AED=0.16;_eAED=0.18;_QI=5|0.9|0.90|1|1|1|11|0|394
chr5_1 exon 36839832 36840068 36839832 ID=Msa0729510-mRNA-1:exon:11210;Parent=Msa0729510-mRNA-1
chr5_1 exon 36840220 36840384 36840220 ID=Msa0729510-mRNA-1:exon:11209;Parent=Msa0729510-mRNA-1
chr5_1 exon 36840616 36840678 36840616 ID=Msa0729510-mRNA-1:exon:11208;Parent=Msa0729510-mRNA-1
chr5_1 exon 36840825 36840887 36840825 ID=Msa0729510-mRNA-1:exon:11207;Parent=Msa0729510-mRNA-1
chr5_1 exon 36840972 36841025 36840972 ID=Msa0729510-mRNA-1:exon:11206;Parent=Msa0729510-mRNA-1
chr5_1 exon 36841364 36841420 36841364 ID=Msa0729510-mRNA-1:exon:11205;Parent=Msa0729510-mRNA-1
chr5_1 exon 36841522 36841590 36841522 ID=Msa0729510-mRNA-1:exon:11204;Parent=Msa0729510-mRNA-1
chr5_1 exon 36842269 36842382 36842269 ID=Msa0729510-mRNA-1:exon:11203;Parent=Msa0729510-mRNA-1
chr5_1 exon 36842461 36842532 36842461 ID=Msa0729510-mRNA-1:exon:11202;Parent=Msa0729510-mRNA-1
chr5_1 exon 36842687 36842814 36842687 ID=Msa0729510-mRNA-1:exon:11201;Parent=Msa0729510-mRNA-1
chr5_1 exon 36843079 36843246 36843079 ID=Msa0729510-mRNA-1:exon:11200;Parent=Msa0729510-mRNA-1
chr5_1 five_prime_UTR 36843242 36843246 36843242 ID=Msa0729510-mRNA-1:five_prime_utr;Parent=Msa0729510-mRNA-1
chr5_1 CDS 36843079 36843241 36843079 ID=Msa0729510-mRNA-1:cds;Parent=Msa0729510-mRNA-1
chr5_1 CDS 36842687 36842814 36842687 ID=Msa0729510-mRNA-1:cds;Parent=Msa0729510-mRNA-1
chr5_1 CDS 36842461 36842532 36842461 ID=Msa0729510-mRNA-1:cds;Parent=Msa0729510-mRNA-1
chr5_1 CDS 36842269 36842382 36842269 ID=Msa0729510-mRNA-1:cds;Parent=Msa0729510-mRNA-1
chr5_1 CDS 36841522 36841590 36841522 ID=Msa0729510-mRNA-1:cds;Parent=Msa0729510-mRNA-1
chr5_1 CDS 36841364 36841420 36841364 ID=Msa0729510-mRNA-1:cds;Parent=Msa0729510-mRNA-1
chr5_1 CDS 36840972 36841025 36840972 ID=Msa0729510-mRNA-1:cds;Parent=Msa0729510-mRNA-1
chr5_1 CDS 36840825 36840887 36840825 ID=Msa0729510-mRNA-1:cds;Parent=Msa0729510-mRNA-1
chr5_1 CDS 36840616 36840678 36840616 ID=Msa0729510-mRNA-1:cds;Parent=Msa0729510-mRNA-1
chr5_1 CDS 36840220 36840384 36840220 ID=Msa0729510-mRNA-1:cds;Parent=Msa0729510-mRNA-1
chr5_1 CDS 36839832 36840068 36839832 ID=Msa0729510-mRNA-1:cds;Parent=Msa0729510-mRNA-1
Gene Sequence

>Msa0729510

ATGTATATGTTGATGGCGCCTCCGAAGCTTTTCGTCTTCGCTTTTTCCGTTGCCCTAATTTTCTCCCTCGTTACTTCCGAAGCCGATGTTTCCATCGAAGATTCTGATTCCTCTGCTCTTAAGATCCAATTAGATCAACTCAATTCCAAGATCCAATCTCTCGAGTCTCAAATCAGTGAGAAAACACAAGAATTGAAGAAAAAGGATCAAGTAATTGCAGAAAAAGAAAAACTTTTCCAAGATAAGTTGAGTAGCATTCAATCCTTGCAGAATGAGGTTGCTTCTCTTCAGAAAAAAGGGTCATTGGATGCCGTGGAGCAGGTTGGAAAGGCTCATGCACGTGCCGATGAACTACAGAAGCAGGTTGACAAGCTTAAAAGCGAACTCGAAGCACAAAACAGTGAGAAAGTGAACTGGGAATCTCGGGTAGCCAAGTTAGAGAAAAAGATTCATGATTTGAACTCAAAACTAGAGGATGTTCAAAAGATAAATGAGGAACAAAAGAAACAAATCCGCAAAACTGAACGTGCTCTTAAAGTTGCCGAGGAAGAAATGTTGAAGGCAAAGCTAGAGGCAACTACCAAAGCAATAGAGCTGAGCAAGACTCATGGTGCTTGGCTTCCTCCTTGGCTTGCTGTACACTATATTCGTAGCAAGTCCGTCGCTGAGAGTCATTGGAATGAACATGGGAAGCCTCTGTTGGAAGTGATATCTCAAAAGGCCCTAGAAAAAAAGGCACAAGCTGGAAAATGGGCTGAACCTCATGTGGAAACAATTAAAACTAATTGGGTTCCAGCTGTGAAAGAACAGTGGTCTGTGGTGAAAACAAAGGTCGAACCTCATGTGCAAGCACTGACTTCAAAGACTGTTGAAGTTTGCAAGTCGTCAAAGGACACACTTGCTCCCCACTTGAATAAGGCAAAAGAATGTGTAGATCCTTATTATCAGGAACAGTTGCAAATTGAAATGCAAAACACTCATTCAGAGAATGAAGCATTTGTCAAAGTGTTTGGAAAAGAACATCCTGGATACGTGCGTTCTATGGGACTTGGGATAACACCATCTCAAATTTCTACTTCTCACCGTGCTAGAACGGCGTCGTCCTTTGAGGCTAATGAGAGGATGTTGAAAATGCAAGCCGAAATTGATTCACTTAAGATAAGGCTTCACAAGTTGATATCTTGA

Protein sequence

>Msa0729510

MYMLMAPPKLFVFAFSVALIFSLVTSEADVSIEDSDSSALKIQLDQLNSKIQSLESQISEKTQELKKKDQVIAEKEKLFQDKLSSIQSLQNEVASLQKKGSLDAVEQVGKAHARADELQKQVDKLKSELEAQNSEKVNWESRVAKLEKKIHDLNSKLEDVQKINEEQKKQIRKTERALKVAEEEMLKAKLEATTKAIELSKTHGAWLPPWLAVHYIRSKSVAESHWNEHGKPLLEVISQKALEKKAQAGKWAEPHVETIKTNWVPAVKEQWSVVKTKVEPHVQALTSKTVEVCKSSKDTLAPHLNKAKECVDPYYQEQLQIEMQNTHSENEAFVKVFGKEHPGYVRSMGLGITPSQISTSHRARTASSFEANERMLKMQAEIDSLKIRLHKLIS*