AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1151910

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1151910 MtrunA17_Chr7g0241761 96.486 313 11 0 1 313 1 313 0.0 629
Msa1151910 MtrunA17_Chr5g0429521 58.360 317 107 9 7 312 1 303 4.52e-114 332
Msa1151910 MtrunA17_Chr3g0104071 53.374 326 113 12 11 311 5 316 1.62e-102 303
Msa1151910 MtrunA17_Chr5g0436501 62.981 208 68 2 11 216 3 203 6.91e-88 264
Msa1151910 MtrunA17_Chr1g0162081 51.546 194 83 3 30 215 7 197 4.67e-57 186
Msa1151910 MtrunA17_Chr1g0210471 50.000 182 74 4 33 208 22 192 1.60e-53 175
Msa1151910 MtrunA17_Chr4g0062741 37.857 280 131 7 30 278 3 270 7.49e-51 170
Msa1151910 MtrunA17_Chr8g0365011 36.047 258 126 8 33 275 6 239 1.98e-35 129
Msa1151910 MtrunA17_Chr6g0488471 78.873 71 15 0 134 204 91 161 4.30e-33 123
Msa1151910 MtrunA17_Chr4g0055931 66.667 81 27 0 132 212 87 167 5.69e-31 118
Msa1151910 MtrunA17_Chr2g0331031 74.648 71 18 0 135 205 104 174 6.31e-31 119
Msa1151910 MtrunA17_Chr8g0389241 76.056 71 16 1 134 204 99 168 1.57e-30 116
Msa1151910 MtrunA17_Chr5g0415191 67.949 78 25 0 134 211 96 173 1.86e-27 108
Msa1151910 MtrunA17_Chr4g0059701 66.667 78 26 0 128 205 72 149 1.54e-25 103
Msa1151910 MtrunA17_Chr3g0135671 48.718 117 53 3 98 214 54 163 5.14e-25 100
Msa1151910 MtrunA17_Chr5g0432941 33.333 192 110 5 34 223 21 196 1.69e-23 96.3
Msa1151910 MtrunA17_Chr3g0092621 54.545 77 35 0 140 216 84 160 3.13e-23 94.4
Msa1151910 MtrunA17_Chr5g0432921 34.359 195 105 7 34 223 20 196 7.50e-23 94.7
Msa1151910 MtrunA17_Chr5g0440731 53.086 81 35 1 129 206 94 174 1.61e-22 95.1
Msa1151910 MtrunA17_Chr5g0440741 55.696 79 32 1 131 206 91 169 4.56e-22 94.0
Msa1151910 MtrunA17_Chr5g0409841 57.534 73 29 1 136 206 88 160 7.49e-21 89.4
Msa1151910 MtrunA17_Chr5g0409831 57.895 76 29 1 136 208 73 148 6.38e-20 86.7
Msa1151910 MtrunA17_Chr6g0452791 72.917 48 13 0 140 187 80 127 4.04e-19 83.2
Msa1151910 MtrunA17_Chr8g0364741 36.975 119 64 2 31 148 6 114 1.02e-18 80.9
Msa1151910 MtrunA17_Chr3g0141601 50.000 78 36 1 33 107 5 82 3.99e-18 77.8
Msa1151910 MtrunA17_Chr1g0155181 48.611 72 37 0 30 101 2 73 8.43e-18 77.0
Msa1151910 MtrunA17_Chr8g0364731 66.667 60 18 1 150 207 11 70 1.01e-17 79.7
Msa1151910 MtrunA17_Chr5g0404101 46.667 75 40 0 23 97 7 81 2.39e-17 76.3
Msa1151910 MtrunA17_Chr3g0144631 50.000 68 34 0 33 100 14 81 1.01e-16 73.9
Msa1151910 MtrunA17_Chr8g0373131 50.000 70 34 1 32 101 2 70 4.18e-16 72.0
Msa1151910 MtrunA17_Chr8g0373111 50.000 70 34 1 32 101 2 70 4.46e-16 72.0
Msa1151910 MtrunA17_Chr8g0373121 50.000 70 34 1 32 101 2 70 4.46e-16 72.0
Msa1151910 MtrunA17_Chr6g0449111 44.928 69 38 0 30 98 5 73 1.70e-15 70.5
Msa1151910 MtrunA17_Chr7g0255841 53.030 66 31 0 38 103 15 80 1.42e-14 68.2
Msa1151910 MtrunA17_Chr3g0081631 43.529 85 38 2 35 118 10 85 1.11e-13 65.9
Msa1151910 MtrunA17_Chr8g0373101 47.143 70 36 1 32 101 2 70 1.30e-13 65.1
Msa1151910 MtrunA17_Chr3g0113121 48.000 75 32 1 142 209 97 171 1.80e-13 68.6
Msa1151910 MtrunA17_Chr1g0192061 52.113 71 29 2 142 208 63 132 4.55e-13 66.6
Msa1151910 MtrunA17_Chr5g0404301 49.206 63 31 1 33 95 2 63 6.20e-13 62.8
Msa1151910 MtrunA17_Chr8g0370121 44.068 59 33 0 128 186 88 146 4.53e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1151910 AT2G38090.1 74.178 213 48 2 7 212 1 213 5.34e-117 339
Msa1151910 AT5G58900.1 64.186 215 60 5 11 211 1 212 3.04e-90 271
Msa1151910 AT5G01200.1 59.375 224 66 6 2 209 1 215 8.34e-83 251
Msa1151910 AT3G11280.2 58.937 207 66 4 11 209 1 196 1.51e-75 233
Msa1151910 AT3G11280.1 58.937 207 66 4 11 209 1 196 1.51e-75 233
Msa1151910 AT5G05790.2 57.971 207 70 5 33 236 29 221 2.17e-72 225
Msa1151910 AT5G05790.1 57.971 207 70 5 33 236 29 221 2.17e-72 225
Msa1151910 AT5G08520.1 50.267 187 92 1 30 215 7 193 9.11e-55 180
Msa1151910 AT1G49010.1 48.500 200 80 4 33 210 6 204 1.02e-49 168
Msa1151910 AT5G04760.1 47.027 185 86 3 33 217 4 176 8.28e-48 160
Msa1151910 AT5G23650.1 44.751 181 92 2 32 207 10 187 2.18e-44 154
Msa1151910 AT5G47390.1 76.712 73 17 0 132 204 88 160 1.13e-31 121
Msa1151910 AT3G10580.2 38.587 184 91 5 38 220 11 173 1.95e-31 118
Msa1151910 AT3G10580.1 38.587 184 91 5 38 220 11 173 3.88e-31 118
Msa1151910 AT5G61620.1 56.436 101 37 1 111 211 86 179 7.54e-29 113
Msa1151910 AT5G56840.1 59.551 89 34 2 135 221 86 174 7.67e-28 108
Msa1151910 AT4G09450.1 39.080 174 83 4 34 206 6 157 1.03e-26 104
Msa1151910 AT1G70000.1 72.222 72 20 0 134 205 92 163 1.48e-26 105
Msa1151910 AT1G70000.2 72.222 72 20 0 134 205 92 163 1.48e-26 105
Msa1151910 AT3G16350.1 84.906 53 8 0 135 187 132 184 2.03e-25 105
Msa1151910 AT1G19000.2 64.474 76 27 0 136 211 98 173 1.07e-23 98.6
Msa1151910 AT1G19000.1 64.474 76 27 0 136 211 98 173 1.07e-23 98.6
Msa1151910 AT1G74840.2 80.769 52 10 0 135 186 91 142 1.44e-23 97.1
Msa1151910 AT1G74840.1 80.769 52 10 0 135 186 91 142 2.00e-23 97.4
Msa1151910 AT3G10590.1 35.204 196 118 7 34 226 6 195 6.45e-20 86.7
Msa1151910 AT1G75250.2 53.731 67 31 0 33 99 10 76 3.54e-17 75.9
Msa1151910 AT1G75250.1 53.731 67 31 0 33 99 10 76 1.13e-16 75.5
Msa1151910 AT4G39250.1 48.485 66 34 0 35 100 14 79 2.00e-15 71.2
Msa1151910 AT2G21650.1 47.761 67 35 0 35 101 14 80 4.57e-14 67.8
Msa1151910 AT1G19510.1 44.872 78 40 1 38 115 15 89 6.72e-14 67.0
Msa1151910 AT2G18328.1 46.032 63 34 0 39 101 15 77 8.52e-12 60.5

Find 109 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAACAACCAATTGGAATTT+TGG 0.118121 7_4:+36868837 None:intergenic
TTGTAGCAAAACTATATATT+TGG 0.123980 7_4:-36866844 Msa1151910:three_prime_UTR
TATTTCATTAGGCAGCTTTC+AGG 0.241192 7_4:-36867578 Msa1151910:CDS
TGTAGCAAAACTATATATTT+GGG 0.257492 7_4:-36866843 Msa1151910:three_prime_UTR
TTTAGATTCCTTAGTTATTT+GGG 0.278161 7_4:-36869071 Msa1151910:five_prime_UTR
AATTTAGAACATAAGGGTTT+TGG 0.283114 7_4:+36869249 None:intergenic
AAGTTCTTATTAATAAATTC+TGG 0.290608 7_4:-36869127 Msa1151910:five_prime_UTR
TTCATAGATTCTAATTACTA+TGG 0.291046 7_4:+36867166 None:intergenic
GCATATTATCAAACAGCATT+TGG 0.304060 7_4:+36869018 None:intergenic
ACATAGTTCCTTGAGTGAAT+TGG 0.308428 7_4:+36866915 None:intergenic
TACAAAAGTGGAAGTTCTTA+TGG 0.330111 7_4:+36868987 None:intergenic
AGGGTTGCTGAGATGATTCC+TGG 0.340116 7_4:-36868719 Msa1151910:CDS
TCCTTCTTCTCTGGACCATT+TGG 0.345458 7_4:-36867468 Msa1151910:CDS
ACAACAAAATTTAGAACATA+AGG 0.348886 7_4:+36869242 None:intergenic
TTGGAGTGAAATTAAGCAAC+TGG 0.359489 7_4:+36869268 None:intergenic
TGCTTTGGCTTATTATGATA+AGG 0.376321 7_4:-36868762 Msa1151910:CDS
AAAGGGAGAGAGAGGTCAAA+GGG 0.379499 7_4:+36869518 None:intergenic
CATATTATCAAACAGCATTT+GGG 0.382694 7_4:+36869019 None:intergenic
ATGCTCAGAAGTATTTCATT+AGG 0.387800 7_4:-36867589 Msa1151910:CDS
AAGACAGTGATCTATGAAAC+AGG 0.390474 7_4:+36869470 None:intergenic
TTAGTTGAATTGAAAACAAA+TGG 0.411456 7_4:+36867359 None:intergenic
AAAAGTATGGCAAGGGAGAC+TGG 0.414734 7_4:-36867667 Msa1151910:CDS
CCTATATCCAAAATTCCAAT+TGG 0.417676 7_4:-36868844 Msa1151910:CDS
TGATGTGATTAAACAGTATA+GGG 0.417708 7_4:-36868684 Msa1151910:CDS
GCTGGTTTGATACCAGTTCC+TGG 0.417898 7_4:-36868632 Msa1151910:CDS
GAAAGGGAGAGAGAGGTCAA+AGG 0.418367 7_4:+36869517 None:intergenic
TAGTATCAAAAGGTGAAAAC+TGG 0.419071 7_4:+36867243 None:intergenic
AGAGTGAGAAAATGAAAGAA+AGG 0.419711 7_4:+36869500 None:intergenic
GCAACCCTTATCCATCTATC+AGG 0.422928 7_4:+36868734 None:intergenic
CAACAAAATTTAGAACATAA+GGG 0.424281 7_4:+36869243 None:intergenic
TAAGCTCTTTGAGAATGCTT+TGG 0.425147 7_4:-36868777 Msa1151910:CDS
TTCTCTGGACCATTTGGTGA+AGG 0.432138 7_4:-36867462 Msa1151910:CDS
ATAAGGATACTCCTGATAGA+TGG 0.435285 7_4:-36868745 Msa1151910:CDS
AAGTAACGATCCTTCTTCTC+TGG 0.444961 7_4:-36867477 Msa1151910:CDS
ACAAATGGCATGCCTTCATC+TGG 0.446288 7_4:+36867374 None:intergenic
TTCAGCTACCCAAATAACTA+AGG 0.451392 7_4:+36869063 None:intergenic
TTTGTCCAGCATGGTTAAGC+AGG 0.451543 7_4:-36867414 Msa1151910:CDS
TTTCAGGAGGGAAGGATAAG+AGG 0.455606 7_4:-36867562 Msa1151910:CDS
GATGTGTGTGTTATTGAAGC+TGG 0.457311 7_4:-36868650 Msa1151910:CDS
GAGATGAAAATAAGCTTAAG+TGG 0.459973 7_4:+36869380 None:intergenic
ATACTCCTGATAGATGGATA+AGG 0.478456 7_4:-36868739 Msa1151910:CDS
GATTTGCAACCTTCACCAAA+TGG 0.478639 7_4:+36867453 None:intergenic
CATATAACTCCACTCTATGT+AGG 0.479647 7_4:+36867002 None:intergenic
TGTTAGTCTATATTAAGAGC+AGG 0.479686 7_4:-36866807 Msa1151910:three_prime_UTR
GTGATGTGATTAAACAGTAT+AGG 0.483162 7_4:-36868685 Msa1151910:CDS
GACTGGAAATTACCAGATGA+AGG 0.483800 7_4:-36867386 Msa1151910:CDS
TACTCCTGATAGATGGATAA+GGG 0.485001 7_4:-36868738 Msa1151910:CDS
ACCAAATGGTCCAGAGAAGA+AGG 0.487953 7_4:+36867467 None:intergenic
TTCTTCCTTTCCTGCTCCGA+CGG 0.488987 7_4:+36868506 None:intergenic
AATGAAAGAAAGGGAGAGAG+AGG 0.489101 7_4:+36869510 None:intergenic
GAGTGAGAAAATGAAAGAAA+GGG 0.499720 7_4:+36869501 None:intergenic
CTAGTTGTATAACCAGGAAC+TGG 0.504989 7_4:+36868620 None:intergenic
AGGGGAAGAGTTGTGATTGG+TGG 0.510116 7_4:+36869537 None:intergenic
AGAGAGATAAGCTACAAAAG+TGG 0.511057 7_4:+36868975 None:intergenic
ATTTGCAAAATAGTATCAAA+AGG 0.512642 7_4:+36867233 None:intergenic
CTCGGCCGTCGGAGCAGGAA+AGG 0.514515 7_4:-36868511 Msa1151910:CDS
TGTTTGATAATATGCCTCTC+TGG 0.514679 7_4:-36869010 Msa1151910:five_prime_UTR
CTATGCTCCTCTTCAGTCCA+TGG 0.515244 7_4:+36868476 None:intergenic
TTCACAAGAATCGAAATCAC+CGG 0.522859 7_4:-36867300 Msa1151910:CDS
AGTGTTGGTGGGAAAAGAAA+TGG 0.524651 7_4:-36868539 Msa1151910:CDS
GATTGACCACTGTGATATCA+TGG 0.524764 7_4:+36867528 None:intergenic
AACTAAAGGAAACATGTTTG+TGG 0.525249 7_4:-36867342 Msa1151910:CDS
TGGTTAAGCAGGAATTTGAC+TGG 0.530767 7_4:-36867403 Msa1151910:CDS
GGTATCCATGATGAGTGCTT+CGG 0.532341 7_4:+36867264 None:intergenic
AAATTCCTGCTTAACCATGC+TGG 0.533010 7_4:+36867409 None:intergenic
CAAAGGGGAAGAGTTGTGAT+TGG 0.542628 7_4:+36869534 None:intergenic
GTTAGTCTATATTAAGAGCA+GGG 0.544833 7_4:-36866806 Msa1151910:three_prime_UTR
GCATGACTTGCGACTTGAGT+TGG 0.545637 7_4:+36867608 None:intergenic
AAGGGAGAGAGAGGTCAAAG+GGG 0.551593 7_4:+36869519 None:intergenic
GAATCATAATTTGTCCAGCA+TGG 0.552113 7_4:-36867423 Msa1151910:CDS
TCACTCAAGGAACTATGTAA+AGG 0.556559 7_4:-36866910 Msa1151910:three_prime_UTR
TTCATTAGGCAGCTTTCAGG+AGG 0.562103 7_4:-36867575 Msa1151910:CDS
ATGTTTGTGGCACCGTCGTG+CGG 0.567658 7_4:-36867329 Msa1151910:CDS
TCACAAGAATCGAAATCACC+GGG 0.573301 7_4:-36867299 Msa1151910:CDS
TGTTTGTGGCACCGTCGTGC+GGG 0.575136 7_4:-36867328 Msa1151910:CDS
TTATCTAGAACAATGAATAG+AGG 0.579227 7_4:-36868890 Msa1151910:CDS
GAGACTGGAGAAACATCTCT+AGG 0.579618 7_4:-36867652 Msa1151910:CDS
TAGGCAGCTTTCAGGAGGGA+AGG 0.581740 7_4:-36867570 Msa1151910:CDS
TCGGAGCAGGAAAGGAAGAA+AGG 0.584815 7_4:-36868503 Msa1151910:CDS
GTACTCCGAAGCACTCATCA+TGG 0.587369 7_4:-36867269 Msa1151910:CDS
TGGAGTGAAATTAAGCAACT+GGG 0.590812 7_4:+36869269 None:intergenic
AAATGGTTCGACTCGGCCGT+CGG 0.594573 7_4:-36868522 Msa1151910:CDS
ATTATCAAACAGCATTTGGG+TGG 0.594579 7_4:+36869022 None:intergenic
GACTTGAGTTGGTGTTCTTG+TGG 0.595027 7_4:+36867619 None:intergenic
TTGGATTGGGATAACAGTGA+AGG 0.598870 7_4:-36868587 Msa1151910:CDS
ATGTAGTTCCAATTCACTCA+AGG 0.604277 7_4:-36866923 Msa1151910:three_prime_UTR
TCGTTACTTTCTGACGAAGG+CGG 0.604880 7_4:+36867491 None:intergenic
AAAGGAAGAAAGGTGTGCCA+TGG 0.605391 7_4:-36868493 Msa1151910:CDS
CATGGACTGAAGAGGAGCAT+AGG 0.606328 7_4:-36868475 Msa1151910:intron
GAGGATCTTCCTACATAGAG+TGG 0.606785 7_4:-36867011 Msa1151910:three_prime_UTR
TGGATTGGGATAACAGTGAA+GGG 0.609140 7_4:-36868586 Msa1151910:CDS
GTAGCAAAACTATATATTTG+GGG 0.615395 7_4:-36866842 Msa1151910:three_prime_UTR
TTGTGAAAGTAGAAGTGAAG+TGG 0.618075 7_4:+36869406 None:intergenic
AGGTGTGCCATGGACTGAAG+AGG 0.618331 7_4:-36868483 Msa1151910:CDS
CTGGACAAATTATGATTCTG+TGG 0.628813 7_4:+36867428 None:intergenic
TGTACTTTAGCAGATTTGTG+AGG 0.643830 7_4:-36867030 Msa1151910:three_prime_UTR
AAAGAGCTAGTTGTATAACC+AGG 0.644968 7_4:+36868614 None:intergenic
GGATCGTTACTTTCTGACGA+AGG 0.646642 7_4:+36867488 None:intergenic
TCATTAGGCAGCTTTCAGGA+GGG 0.651718 7_4:-36867574 Msa1151910:CDS
GCAGCATCAATGAACTGAGG+AGG 0.656599 7_4:-36867201 Msa1151910:exon
GGAAGTTCTTATGGCCAGAG+AGG 0.657657 7_4:+36868996 None:intergenic
TGGTTGTTTCAAGAAAACAA+TGG 0.668637 7_4:-36868824 Msa1151910:CDS
GGAAAAGAAATGGTTCGACT+CGG 0.671112 7_4:-36868529 Msa1151910:CDS
AGACAGTGATCTATGAAACA+GGG 0.679917 7_4:+36869471 None:intergenic
TGTGAAGAAATCCCGCACGA+CGG 0.712958 7_4:+36867317 None:intergenic
TATGCAGCATCAATGAACTG+AGG 0.716248 7_4:-36867204 Msa1151910:exon
ATGAAAATAAGCTTAAGTGG+TGG 0.739617 7_4:+36869383 None:intergenic
CACAAGAATCGAAATCACCG+GGG 0.784252 7_4:-36867298 Msa1151910:CDS
AAGTATCCATGATATCACAG+TGG 0.791298 7_4:-36867534 Msa1151910:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTTTTCTTTCTCTTT+TGG - chr7_4:36867154-36867173 Msa1151910:three_prime_UTR 15.0%
!! AAGTTCTTATTAATAAATTC+TGG - chr7_4:36867219-36867238 Msa1151910:CDS 15.0%
!!! ATTTTAGTTAGTGAAATTAT+AGG - chr7_4:36867986-36868005 Msa1151910:intron 15.0%
!!! CAACAAAATTTAGAACATAA+GGG + chr7_4:36867106-36867125 None:intergenic 20.0%
!!! ACAACAAAATTTAGAACATA+AGG + chr7_4:36867107-36867126 None:intergenic 20.0%
!!! TTATGTTCTAAATTTTGTTG+TGG - chr7_4:36867106-36867125 Msa1151910:three_prime_UTR 20.0%
!!! TATGTTCTAAATTTTGTTGT+GGG - chr7_4:36867107-36867126 Msa1151910:three_prime_UTR 20.0%
!!! TTTTAGATTCCTTAGTTATT+TGG - chr7_4:36867274-36867293 Msa1151910:CDS 20.0%
!! TTTAGATTCCTTAGTTATTT+GGG - chr7_4:36867275-36867294 Msa1151910:CDS 20.0%
!!! CCATTTTCTAACATTATTAA+CGG + chr7_4:36868407-36868426 None:intergenic 20.0%
!! TATGGTTGATTAACATAAAA+AGG + chr7_4:36868638-36868657 None:intergenic 20.0%
!!! TTTTTATGTTAATCAACCAT+AGG - chr7_4:36868637-36868656 Msa1151910:CDS 20.0%
!! TTAGTTGAATTGAAAACAAA+TGG + chr7_4:36868990-36869009 None:intergenic 20.0%
!!! TTTGTTTTCAATTCAACTAA+AGG - chr7_4:36868990-36869009 Msa1151910:five_prime_UTR 20.0%
!! ATTTGCAAAATAGTATCAAA+AGG + chr7_4:36869116-36869135 None:intergenic 20.0%
!! TTCATAGATTCTAATTACTA+TGG + chr7_4:36869183-36869202 None:intergenic 20.0%
!! TTGTAGCAAAACTATATATT+TGG - chr7_4:36869502-36869521 Msa1151910:five_prime_UTR 20.0%
!! TGTAGCAAAACTATATATTT+GGG - chr7_4:36869503-36869522 Msa1151910:five_prime_UTR 20.0%
!!! AATTTAGAACATAAGGGTTT+TGG + chr7_4:36867100-36867119 None:intergenic 25.0%
!!! TAAATTCTGGATTTTTTCCT+TGG - chr7_4:36867232-36867251 Msa1151910:CDS 25.0%
! AACTAAGGAATCTAAAAAAG+TGG + chr7_4:36867271-36867290 None:intergenic 25.0%
! CATATTATCAAACAGCATTT+GGG + chr7_4:36867330-36867349 None:intergenic 25.0%
!! TTATCTAGAACAATGAATAG+AGG - chr7_4:36867456-36867475 Msa1151910:CDS 25.0%
! TGATGTGATTAAACAGTATA+GGG - chr7_4:36867662-36867681 Msa1151910:CDS 25.0%
! TTAGTGAAATTATAGGTGTT+GGG - chr7_4:36867993-36868012 Msa1151910:intron 25.0%
!! AATTTTGTGCTTGAAATGAA+TGG - chr7_4:36868017-36868036 Msa1151910:intron 25.0%
! ACTTAACCAAAGAACTAATA+TGG + chr7_4:36868079-36868098 None:intergenic 25.0%
! AAAAACCTTCAATCATTCTA+GGG + chr7_4:36868131-36868150 None:intergenic 25.0%
! TAAAAACCTTCAATCATTCT+AGG + chr7_4:36868132-36868151 None:intergenic 25.0%
! ACTATGGAATCATTCTAATA+TGG + chr7_4:36868162-36868181 None:intergenic 25.0%
! AATGATTCCATAGTGTAAAT+CGG - chr7_4:36868168-36868187 Msa1151910:intron 25.0%
!!! GTTTTTGTGCTTTGAAATTA+TGG - chr7_4:36868292-36868311 Msa1151910:intron 25.0%
! CCGTTAATAATGTTAGAAAA+TGG - chr7_4:36868404-36868423 Msa1151910:intron 25.0%
! TATAATAATCTATGTAACCC+CGG + chr7_4:36868513-36868532 None:intergenic 25.0%
! GGGTTACATAGATTATTATA+TGG - chr7_4:36868513-36868532 Msa1151910:CDS 25.0%
!! AACAAGTAAAGCATTTATCA+AGG + chr7_4:36868544-36868563 None:intergenic 25.0%
! TTGATAAATGCTTTACTTGT+TGG - chr7_4:36868543-36868562 Msa1151910:CDS 25.0%
!! TGATTTTCTGATTACTTGTT+TGG - chr7_4:36869284-36869303 Msa1151910:five_prime_UTR 25.0%
! GTAGCAAAACTATATATTTG+GGG - chr7_4:36869504-36869523 Msa1151910:five_prime_UTR 25.0%
GAGTGAGAAAATGAAAGAAA+GGG + chr7_4:36866848-36866867 None:intergenic 30.0%
AGAGTGAGAAAATGAAAGAA+AGG + chr7_4:36866849-36866868 None:intergenic 30.0%
ATGAAAATAAGCTTAAGTGG+TGG + chr7_4:36866966-36866985 None:intergenic 30.0%
GAGATGAAAATAAGCTTAAG+TGG + chr7_4:36866969-36866988 None:intergenic 30.0%
GCATATTATCAAACAGCATT+TGG + chr7_4:36867331-36867350 None:intergenic 30.0%
TACAAAAGTGGAAGTTCTTA+TGG + chr7_4:36867362-36867381 None:intergenic 30.0%
! CCAATTGGAATTTTGGATAT+AGG + chr7_4:36867505-36867524 None:intergenic 30.0%
CCTATATCCAAAATTCCAAT+TGG - chr7_4:36867502-36867521 Msa1151910:CDS 30.0%
! GAAACAACCAATTGGAATTT+TGG + chr7_4:36867512-36867531 None:intergenic 30.0%
! GTTTTCTTGAAACAACCAAT+TGG + chr7_4:36867520-36867539 None:intergenic 30.0%
! TGGTTGTTTCAAGAAAACAA+TGG - chr7_4:36867522-36867541 Msa1151910:CDS 30.0%
! TGCTTTGGCTTATTATGATA+AGG - chr7_4:36867584-36867603 Msa1151910:CDS 30.0%
GTGATGTGATTAAACAGTAT+AGG - chr7_4:36867661-36867680 Msa1151910:CDS 30.0%
!! TACAACTAGCTCTTTTACAT+TGG - chr7_4:36867740-36867759 Msa1151910:intron 30.0%
! TAGCTCTTTTACATTGGATT+GGG - chr7_4:36867746-36867765 Msa1151910:intron 30.0%
GTTAGTGAAATTATAGGTGT+TGG - chr7_4:36867992-36868011 Msa1151910:intron 30.0%
ATCGATGATTTGAATAATCG+AGG - chr7_4:36868206-36868225 Msa1151910:intron 30.0%
ATGATTTGAATAATCGAGGA+AGG - chr7_4:36868210-36868229 Msa1151910:intron 30.0%
TGTTTGAGCGATTATAAATC+AGG - chr7_4:36868334-36868353 Msa1151910:intron 30.0%
!! TATCTATGAAGCATTGATAC+TGG - chr7_4:36868371-36868390 Msa1151910:intron 30.0%
TTGAATGTAACTACACGTTT+CGG - chr7_4:36868434-36868453 Msa1151910:intron 30.0%
! AACCATAGGCAATTTTTGTT+GGG - chr7_4:36868651-36868670 Msa1151910:CDS 30.0%
!! ATGCTCAGAAGTATTTCATT+AGG - chr7_4:36868757-36868776 Msa1151910:CDS 30.0%
AACTAAAGGAAACATGTTTG+TGG - chr7_4:36869004-36869023 Msa1151910:five_prime_UTR 30.0%
TAGTATCAAAAGGTGAAAAC+TGG + chr7_4:36869106-36869125 None:intergenic 30.0%
! TCTCTCAACTTTTTATGAGA+AGG - chr7_4:36869389-36869408 Msa1151910:five_prime_UTR 30.0%
! TGTTAGTCTATATTAAGAGC+AGG - chr7_4:36869539-36869558 Msa1151910:five_prime_UTR 30.0%
! GTTAGTCTATATTAAGAGCA+GGG - chr7_4:36869540-36869559 Msa1151910:five_prime_UTR 30.0%
AGACAGTGATCTATGAAACA+GGG + chr7_4:36866878-36866897 None:intergenic 35.0%
AAGACAGTGATCTATGAAAC+AGG + chr7_4:36866879-36866898 None:intergenic 35.0%
TTGTGAAAGTAGAAGTGAAG+TGG + chr7_4:36866943-36866962 None:intergenic 35.0%
TGGAGTGAAATTAAGCAACT+GGG + chr7_4:36867080-36867099 None:intergenic 35.0%
TTGGAGTGAAATTAAGCAAC+TGG + chr7_4:36867081-36867100 None:intergenic 35.0%
!!! TGGATTTTTTCCTTGGACTT+TGG - chr7_4:36867239-36867258 Msa1151910:CDS 35.0%
TTCAGCTACCCAAATAACTA+AGG + chr7_4:36867286-36867305 None:intergenic 35.0%
ATTATCAAACAGCATTTGGG+TGG + chr7_4:36867327-36867346 None:intergenic 35.0%
! TGTTTGATAATATGCCTCTC+TGG - chr7_4:36867336-36867355 Msa1151910:CDS 35.0%
AGAGAGATAAGCTACAAAAG+TGG + chr7_4:36867374-36867393 None:intergenic 35.0%
! GAATTTTGGATATAGGAAGC+TGG + chr7_4:36867498-36867517 None:intergenic 35.0%
! TAAGCTCTTTGAGAATGCTT+TGG - chr7_4:36867569-36867588 Msa1151910:CDS 35.0%
ATAAGGATACTCCTGATAGA+TGG - chr7_4:36867601-36867620 Msa1151910:CDS 35.0%
ATACTCCTGATAGATGGATA+AGG - chr7_4:36867607-36867626 Msa1151910:CDS 35.0%
TACTCCTGATAGATGGATAA+GGG - chr7_4:36867608-36867627 Msa1151910:CDS 35.0%
ATGATTCCTGGAAAAACTGT+TGG - chr7_4:36867639-36867658 Msa1151910:CDS 35.0%
AAAGAGCTAGTTGTATAACC+AGG + chr7_4:36867735-36867754 None:intergenic 35.0%
!! CTAGCTCTTTTACATTGGAT+TGG - chr7_4:36867745-36867764 Msa1151910:intron 35.0%
!! TTCAAGCAGTTTTGTAGTGT+TGG - chr7_4:36867792-36867811 Msa1151910:intron 35.0%
! CATCAGCCATATTAGTTCTT+TGG - chr7_4:36868070-36868089 Msa1151910:intron 35.0%
TAAAGCCCTAGAATGATTGA+AGG - chr7_4:36868123-36868142 Msa1151910:intron 35.0%
!! TGAATCACCGATTTACACTA+TGG + chr7_4:36868178-36868197 None:intergenic 35.0%
AGAGTCAGATATCAAATGCA+AGG + chr7_4:36868571-36868590 None:intergenic 35.0%
!! ATCCAGTGTTTTTGCTTCTT+TGG - chr7_4:36868595-36868614 Msa1151910:CDS 35.0%
! CAACCATAGGCAATTTTTGT+TGG - chr7_4:36868650-36868669 Msa1151910:CDS 35.0%
TTGTTGGGTCTGAAAAAGTA+TGG - chr7_4:36868666-36868685 Msa1151910:CDS 35.0%
TATTTCATTAGGCAGCTTTC+AGG - chr7_4:36868768-36868787 Msa1151910:CDS 35.0%
AAGTATCCATGATATCACAG+TGG - chr7_4:36868812-36868831 Msa1151910:CDS 35.0%
CTGGACAAATTATGATTCTG+TGG + chr7_4:36868921-36868940 None:intergenic 35.0%
! GAATCATAATTTGTCCAGCA+TGG - chr7_4:36868923-36868942 Msa1151910:five_prime_UTR 35.0%
TTCACAAGAATCGAAATCAC+CGG - chr7_4:36869046-36869065 Msa1151910:five_prime_UTR 35.0%
TGTACTTTAGCAGATTTGTG+AGG - chr7_4:36869316-36869335 Msa1151910:five_prime_UTR 35.0%
CATATAACTCCACTCTATGT+AGG + chr7_4:36869347-36869366 None:intergenic 35.0%
ATGTAGTTCCAATTCACTCA+AGG - chr7_4:36869423-36869442 Msa1151910:five_prime_UTR 35.0%
ACATAGTTCCTTGAGTGAAT+TGG + chr7_4:36869434-36869453 None:intergenic 35.0%
TCACTCAAGGAACTATGTAA+AGG - chr7_4:36869436-36869455 Msa1151910:five_prime_UTR 35.0%
AATGAAAGAAAGGGAGAGAG+AGG + chr7_4:36866839-36866858 None:intergenic 40.0%
!!! GTGGTTTTTTCCAAAGTCCA+AGG + chr7_4:36867252-36867271 None:intergenic 40.0%
! ACATCACCAACAGTTTTTCC+AGG + chr7_4:36867648-36867667 None:intergenic 40.0%
! GATGTGTGTGTTATTGAAGC+TGG - chr7_4:36867696-36867715 Msa1151910:intron 40.0%
CTAGTTGTATAACCAGGAAC+TGG + chr7_4:36867729-36867748 None:intergenic 40.0%
! TTGGATTGGGATAACAGTGA+AGG - chr7_4:36867759-36867778 Msa1151910:intron 40.0%
! TGGATTGGGATAACAGTGAA+GGG - chr7_4:36867760-36867779 Msa1151910:intron 40.0%
!! AAGCAGTTTTGTAGTGTTGG+TGG - chr7_4:36867795-36867814 Msa1151910:intron 40.0%
!!! AGCAGTTTTGTAGTGTTGGT+GGG - chr7_4:36867796-36867815 Msa1151910:intron 40.0%
!! AGTGTTGGTGGGAAAAGAAA+TGG - chr7_4:36867807-36867826 Msa1151910:intron 40.0%
GGAAAAGAAATGGTTCGACT+CGG - chr7_4:36867817-36867836 Msa1151910:intron 40.0%
! GGCTGATGATTTTCAACTTC+AGG + chr7_4:36868058-36868077 None:intergenic 40.0%
ATCGAGGAAGGAAGAATCAT+TGG - chr7_4:36868222-36868241 Msa1151910:intron 40.0%
GACTTCAGAGTTTAGACTGA+AGG + chr7_4:36868491-36868510 None:intergenic 40.0%
!! TCAGTCTAAACTCTGAAGTC+CGG - chr7_4:36868491-36868510 Msa1151910:CDS 40.0%
AGCCAAAGAAGCAAAAACAC+TGG + chr7_4:36868600-36868619 None:intergenic 40.0%
GACCCAACAAAAATTGCCTA+TGG + chr7_4:36868656-36868675 None:intergenic 40.0%
! GGTCTGAAAAAGTATGGCAA+GGG - chr7_4:36868672-36868691 Msa1151910:CDS 40.0%
GATTGACCACTGTGATATCA+TGG + chr7_4:36868821-36868840 None:intergenic 40.0%
AAGTAACGATCCTTCTTCTC+TGG - chr7_4:36868869-36868888 Msa1151910:CDS 40.0%
GATTTGCAACCTTCACCAAA+TGG + chr7_4:36868896-36868915 None:intergenic 40.0%
AAATTCCTGCTTAACCATGC+TGG + chr7_4:36868940-36868959 None:intergenic 40.0%
TGGTTAAGCAGGAATTTGAC+TGG - chr7_4:36868943-36868962 Msa1151910:five_prime_UTR 40.0%
GACTGGAAATTACCAGATGA+AGG - chr7_4:36868960-36868979 Msa1151910:five_prime_UTR 40.0%
TCACAAGAATCGAAATCACC+GGG - chr7_4:36869047-36869066 Msa1151910:five_prime_UTR 40.0%
TATGCAGCATCAATGAACTG+AGG - chr7_4:36869142-36869161 Msa1151910:five_prime_UTR 40.0%
CAAAGGGGAAGAGTTGTGAT+TGG + chr7_4:36866815-36866834 None:intergenic 45.0%
AAAGGGAGAGAGAGGTCAAA+GGG + chr7_4:36866831-36866850 None:intergenic 45.0%
GCAACCCTTATCCATCTATC+AGG + chr7_4:36867615-36867634 None:intergenic 45.0%
! AAAGGAAGAAAGGTGTGCCA+TGG - chr7_4:36867853-36867872 Msa1151910:intron 45.0%
TACACGTTTCGGTTTCGTGT+CGG - chr7_4:36868445-36868464 Msa1151910:intron 45.0%
!! CAGTCTAAACTCTGAAGTCC+GGG - chr7_4:36868492-36868511 Msa1151910:CDS 45.0%
!! AGTCTAAACTCTGAAGTCCG+GGG - chr7_4:36868493-36868512 Msa1151910:CDS 45.0%
! GGGTCTGAAAAAGTATGGCA+AGG - chr7_4:36868671-36868690 Msa1151910:CDS 45.0%
! AAAAGTATGGCAAGGGAGAC+TGG - chr7_4:36868679-36868698 Msa1151910:CDS 45.0%
GAGACTGGAGAAACATCTCT+AGG - chr7_4:36868694-36868713 Msa1151910:CDS 45.0%
!! GACTTGAGTTGGTGTTCTTG+TGG + chr7_4:36868730-36868749 None:intergenic 45.0%
TTCATTAGGCAGCTTTCAGG+AGG - chr7_4:36868771-36868790 Msa1151910:CDS 45.0%
TCATTAGGCAGCTTTCAGGA+GGG - chr7_4:36868772-36868791 Msa1151910:CDS 45.0%
TTTCAGGAGGGAAGGATAAG+AGG - chr7_4:36868784-36868803 Msa1151910:CDS 45.0%
! TCGTTACTTTCTGACGAAGG+CGG + chr7_4:36868858-36868877 None:intergenic 45.0%
! GGATCGTTACTTTCTGACGA+AGG + chr7_4:36868861-36868880 None:intergenic 45.0%
TCCTTCTTCTCTGGACCATT+TGG - chr7_4:36868878-36868897 Msa1151910:CDS 45.0%
ACCAAATGGTCCAGAGAAGA+AGG + chr7_4:36868882-36868901 None:intergenic 45.0%
! TTCTCTGGACCATTTGGTGA+AGG - chr7_4:36868884-36868903 Msa1151910:CDS 45.0%
TTTGTCCAGCATGGTTAAGC+AGG - chr7_4:36868932-36868951 Msa1151910:five_prime_UTR 45.0%
ACAAATGGCATGCCTTCATC+TGG + chr7_4:36868975-36868994 None:intergenic 45.0%
CACAAGAATCGAAATCACCG+GGG - chr7_4:36869048-36869067 Msa1151910:five_prime_UTR 45.0%
GGTATCCATGATGAGTGCTT+CGG + chr7_4:36869085-36869104 None:intergenic 45.0%
GAGGATCTTCCTACATAGAG+TGG - chr7_4:36869335-36869354 Msa1151910:five_prime_UTR 45.0%
AGGGGAAGAGTTGTGATTGG+TGG + chr7_4:36866812-36866831 None:intergenic 50.0%
AAGGGAGAGAGAGGTCAAAG+GGG + chr7_4:36866830-36866849 None:intergenic 50.0%
GAAAGGGAGAGAGAGGTCAA+AGG + chr7_4:36866832-36866851 None:intergenic 50.0%
GGAAGTTCTTATGGCCAGAG+AGG + chr7_4:36867353-36867372 None:intergenic 50.0%
AGGGTTGCTGAGATGATTCC+TGG - chr7_4:36867627-36867646 Msa1151910:CDS 50.0%
!! GCTGGTTTGATACCAGTTCC+TGG - chr7_4:36867714-36867733 Msa1151910:intron 50.0%
TTCTTCCTTTCCTGCTCCGA+CGG + chr7_4:36867843-36867862 None:intergenic 50.0%
TCGGAGCAGGAAAGGAAGAA+AGG - chr7_4:36867843-36867862 Msa1151910:intron 50.0%
CTATGCTCCTCTTCAGTCCA+TGG + chr7_4:36867873-36867892 None:intergenic 50.0%
! CATGGACTGAAGAGGAGCAT+AGG - chr7_4:36867871-36867890 Msa1151910:intron 50.0%
! TTTCGGTTTCGTGTCGGCAT+TGG - chr7_4:36868451-36868470 Msa1151910:intron 50.0%
! GCATGACTTGCGACTTGAGT+TGG + chr7_4:36868741-36868760 None:intergenic 50.0%
ACGAAGGCGGTTTCGTTTCT+TGG + chr7_4:36868845-36868864 None:intergenic 50.0%
TGTGAAGAAATCCCGCACGA+CGG + chr7_4:36869032-36869051 None:intergenic 50.0%
! GTACTCCGAAGCACTCATCA+TGG - chr7_4:36869077-36869096 Msa1151910:five_prime_UTR 50.0%
GCAGCATCAATGAACTGAGG+AGG - chr7_4:36869145-36869164 Msa1151910:five_prime_UTR 50.0%
!! AAATGGTTCGACTCGGCCGT+CGG - chr7_4:36867824-36867843 Msa1151910:intron 55.0%
! AGGTGTGCCATGGACTGAAG+AGG - chr7_4:36867863-36867882 Msa1151910:intron 55.0%
TAGGCAGCTTTCAGGAGGGA+AGG - chr7_4:36868776-36868795 Msa1151910:CDS 55.0%
ATGTTTGTGGCACCGTCGTG+CGG - chr7_4:36869017-36869036 Msa1151910:five_prime_UTR 55.0%
CTTCGGAGTACATTACGCCC+CGG + chr7_4:36869068-36869087 None:intergenic 55.0%
TGTTTGTGGCACCGTCGTGC+GGG - chr7_4:36869018-36869037 Msa1151910:five_prime_UTR 60.0%
!! TTCGACTCGGCCGTCGGAGC+AGG - chr7_4:36867830-36867849 Msa1151910:intron 70.0%
CTCGGCCGTCGGAGCAGGAA+AGG - chr7_4:36867835-36867854 Msa1151910:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 36866798 36869570 36866798 ID=Msa1151910;Name=Msa1151910
chr7_4 mRNA 36866798 36869570 36866798 ID=Msa1151910-mRNA-1;Parent=Msa1151910;Name=Msa1151910-mRNA-1;_AED=0.00;_eAED=0.00;_QI=652|1|1|1|1|1|2|413|313
chr7_4 exon 36866798 36867709 36866798 ID=Msa1151910-mRNA-1:exon:8681;Parent=Msa1151910-mRNA-1
chr7_4 exon 36868476 36869570 36868476 ID=Msa1151910-mRNA-1:exon:8680;Parent=Msa1151910-mRNA-1
chr7_4 five_prime_UTR 36868919 36869570 36868919 ID=Msa1151910-mRNA-1:five_prime_utr;Parent=Msa1151910-mRNA-1
chr7_4 CDS 36868476 36868918 36868476 ID=Msa1151910-mRNA-1:cds;Parent=Msa1151910-mRNA-1
chr7_4 CDS 36867211 36867709 36867211 ID=Msa1151910-mRNA-1:cds;Parent=Msa1151910-mRNA-1
chr7_4 three_prime_UTR 36866798 36867210 36866798 ID=Msa1151910-mRNA-1:three_prime_utr;Parent=Msa1151910-mRNA-1
Gene Sequence

>Msa1151910

ATGATGTTATCTAGAACAATGAATAGAGGAGTTGAAGTTCTATCACCAGCTTCCTATATCCAAAATTCCAATTGGTTGTTTCAAGAAAACAATGGTTCAAAATTTACTTCAGAAGAGAATAAGCTCTTTGAGAATGCTTTGGCTTATTATGATAAGGATACTCCTGATAGATGGATAAGGGTTGCTGAGATGATTCCTGGAAAAACTGTTGGTGATGTGATTAAACAGTATAGGGAGCTTGAAGAAGATGTGTGTGTTATTGAAGCTGGTTTGATACCAGTTCCTGGTTATACAACTAGCTCTTTTACATTGGATTGGGATAACAGTGAAGGGTATGATGAGTTCAAGCAGTTTTGTAGTGTTGGTGGGAAAAGAAATGGTTCGACTCGGCCGTCGGAGCAGGAAAGGAAGAAAGGTGTGCCATGGACTGAAGAGGAGCATAGGCAATTTTTGTTGGGTCTGAAAAAGTATGGCAAGGGAGACTGGAGAAACATCTCTAGGAATTTTGTGACCACAAGAACACCAACTCAAGTCGCAAGTCATGCTCAGAAGTATTTCATTAGGCAGCTTTCAGGAGGGAAGGATAAGAGGAGATCAAGTATCCATGATATCACAGTGGTCAATCTCCAAGAAACGAAACCGCCTTCGTCAGAAAGTAACGATCCTTCTTCTCTGGACCATTTGGTGAAGGTTGCAAATCAACCACAGAATCATAATTTGTCCAGCATGGTTAAGCAGGAATTTGACTGGAAATTACCAGATGAAGGCATGCCATTTGTTTTCAATTCAACTAAAGGAAACATGTTTGTGGCACCGTCGTGCGGGATTTCTTCACAAGAATCGAAATCACCGGGGCGTAATGTACTCCGAAGCACTCATCATGGATACCAGTTTTCACCTTTTGATACTATTTTGCAAATGCAATCTATGCAGCATCAATGA
Protein sequence

>Msa1151910

MMLSRTMNRGVEVLSPASYIQNSNWLFQENNGSKFTSEENKLFENALAYYDKDTPDRWIRVAEMIPGKTVGDVIKQYRELEEDVCVIEAGLIPVPGYTTSSFTLDWDNSEGYDEFKQFCSVGGKRNGSTRPSEQERKKGVPWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLSGGKDKRRSSIHDITVVNLQETKPPSSESNDPSSLDHLVKVANQPQNHNLSSMVKQEFDWKLPDEGMPFVFNSTKGNMFVAPSCGISSQESKSPGRNVLRSTHHGYQFSPFDTILQMQSMQHQ*