AlfalfaGEDB | Msa0700740

M. sativa cultivar zhongmu-4 / Msa0700740

KEGG: -
GO: -
PFAM: PF14368.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0700740	XP_003629697.1	95.361	194	7	1	1	192	1	194	1.24e-127	367

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0700740	sp\|O64865\|LTG14_ARATH	36.275	204	110	3	6	192	3	203	4.54e-41	140

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0700740	G7LHX9	95.361	194	7	1	1	192	1	194	5.92e-128	367

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0564460	Msa0700740	0.830161	3.431979e-55	-8.615850e-47
Msa0617760	Msa0700740	0.853277	2.657633e-61	-8.615850e-47
Msa0656730	Msa0700740	0.914798	1.255635e-84	-8.615850e-47

Showing 1 to 3 of 3 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0700740	MtrunA17_Chr8g0378461	95.361	194	7	1	1	192	1	194	1.14e-131	367
Msa0700740	MtrunA17_Chr3g0121381	51.765	170	80	1	23	192	18	185	4.25e-57	178
Msa0700740	MtrunA17_Chr8g0356191	38.728	173	104	2	15	185	13	185	4.41e-39	132
Msa0700740	MtrunA17_Chr7g0219391	45.631	103	52	1	15	113	10	112	4.40e-27	99.8
Msa0700740	MtrunA17_Chr1g0205191	40.789	76	42	1	33	108	25	97	2.76e-12	60.8
Msa0700740	MtrunA17_Chr1g0205181	37.736	106	58	3	9	113	6	104	3.97e-12	61.2
Msa0700740	MtrunA17_Chr5g0395001	27.778	144	94	4	15	154	12	149	3.17e-11	59.3
Msa0700740	MtrunA17_Chr5g0394991	34.862	109	64	4	10	113	6	112	4.72e-11	59.7
Msa0700740	MtrunA17_Chr1g0205201	39.024	82	48	2	33	113	25	105	6.20e-11	58.2
Msa0700740	MtrunA17_Chr5g0429901	32.653	147	79	6	14	149	6	143	9.30e-11	58.5

Showing 1 to 10 of 10 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0700740	AT2G44300.1	36.275	204	110	3	6	192	3	203	4.62e-42	140
Msa0700740	AT2G44290.1	35.567	194	107	2	14	192	14	204	1.19e-41	139
Msa0700740	AT1G55260.1	41.622	185	96	5	10	190	50	226	1.40e-41	140
Msa0700740	AT1G55260.2	41.209	182	98	4	10	190	50	223	1.80e-41	139
Msa0700740	AT3G58550.1	39.333	150	88	2	8	154	10	159	2.93e-33	117
Msa0700740	AT3G22600.1	32.967	91	60	1	15	105	7	96	6.32e-14	67.0
Msa0700740	AT2G48130.2	35.000	100	63	2	15	113	9	107	1.78e-13	65.9
Msa0700740	AT2G48130.6	35.000	100	63	2	15	113	9	107	1.78e-13	65.9
Msa0700740	AT2G48130.4	35.000	100	63	2	15	113	9	107	1.78e-13	65.9
Msa0700740	AT2G48130.5	35.000	100	63	2	15	113	9	107	1.78e-13	65.9

Showing 1 to 10 of 16 entries

Previous1 2Next

Find 65 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGGTGGCTCTTGGTAG+AGG	0.525495	4_4:+71893067	Msa0700740:CDS
AAATGTCAACATTTAATAAG+AGG	0.437356	4_4:+71893156	Msa0700740:three_prime_UTR
AAATTTACCTGGAGGAACTG+CGG	0.666666	4_4:-71891728	None:intergenic
AAGTAGGAAACTAAAACAAA+TGG	0.516446	4_4:-71893107	None:intergenic
AATTCAAACTACGAAGAAGT+AGG	0.544914	4_4:-71893123	None:intergenic
ACAATCCTTTGGTAACTTAA+GGG	0.380953	4_4:-71891501	None:intergenic
ACAATCTATGGTTGGAGATT+TGG	0.249161	4_4:-71891372	None:intergenic
ACAATTGCTCAAGACAAGAA+CGG	0.667135	4_4:+71893032	Msa0700740:CDS
ACAGACAAGGAAAGGAAGGA+TGG	0.594898	4_4:-71893285	None:intergenic
ACATGAGGCTAAGGTATTTG+AGG	0.480429	4_4:+71891672	Msa0700740:CDS

Showing 1 to 10 of 65 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TTTGTCTTGGTTAATATCTG+AGG	-	chr4_4:71891291-71891310	None:intergenic	30.0%
ACCCAAATCAGTAAAATACA+AGG	+	chr4_4:71891812-71891831	Msa0700740:intron	30.0%
AAAATACAAGGAAGTCAAGA+AGG	+	chr4_4:71891824-71891843	Msa0700740:intron	30.0%
AAATACAAGGAAGTCAAGAA+GGG	+	chr4_4:71891825-71891844	Msa0700740:intron	30.0%
AAGACTCGAAAAACAAATTG+AGG	+	chr4_4:71892783-71892802	Msa0700740:intron	30.0%
AGACTCGAAAAACAAATTGA+GGG	+	chr4_4:71892784-71892803	Msa0700740:intron	30.0%
TAACAAAACATGAAGACCTA+AGG	-	chr4_4:71892850-71892869	None:intergenic	30.0%
CTTAATAGAGATTAGAGTGA+AGG	-	chr4_4:71892879-71892898	None:intergenic	30.0%
AATTCATTAATTGCAGCTAG+TGG	+	chr4_4:71892987-71893006	Msa0700740:intron	30.0%
AATTCAAACTACGAAGAAGT+AGG	-	chr4_4:71893126-71893145	None:intergenic	30.0%

Showing 1 to 10 of 253 entries

Previous1 2 3 4 5…26Next

Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	71891103	71893437	71891103	ID=Msa0700740;Name=Msa0700740
chr4_4	mRNA	71891103	71893437	71891103	ID=Msa0700740-mRNA-1;Parent=Msa0700740;Name=Msa0700740-mRNA-1;_AED=0.06;_eAED=0.06;_QI=109\|1\|1\|1\|1\|1\|3\|295\|192
chr4_4	exon	71891103	71891554	71891103	ID=Msa0700740-mRNA-1:exon:21905;Parent=Msa0700740-mRNA-1
chr4_4	exon	71891647	71891742	71891647	ID=Msa0700740-mRNA-1:exon:21906;Parent=Msa0700740-mRNA-1
chr4_4	exon	71893003	71893437	71893003	ID=Msa0700740-mRNA-1:exon:21907;Parent=Msa0700740-mRNA-1
chr4_4	five_prime_UTR	71891103	71891211	71891103	ID=Msa0700740-mRNA-1:five_prime_utr;Parent=Msa0700740-mRNA-1
chr4_4	CDS	71891212	71891554	71891212	ID=Msa0700740-mRNA-1:cds;Parent=Msa0700740-mRNA-1
chr4_4	CDS	71891647	71891742	71891647	ID=Msa0700740-mRNA-1:cds;Parent=Msa0700740-mRNA-1
chr4_4	CDS	71893003	71893142	71893003	ID=Msa0700740-mRNA-1:cds;Parent=Msa0700740-mRNA-1
chr4_4	three_prime_UTR	71893143	71893437	71893143	ID=Msa0700740-mRNA-1:three_prime_utr;Parent=Msa0700740-mRNA-1

Gene Sequence

>Msa0700740

ATGGGTTGCAAAAGCACAACAAATCTATCACTCTTCTCTACCTTGATTTTCCTAGTCCTTATGTTTGGTCTTGTAACCTCAGATATTAACCAAGACAAAGCAGAATGCACCGACAAACTCCTTACTTTGGCTGGTTGTCTTCCCTTTGTGACTAATCAAGCCAAATCTCCAACCATAGATTGTTGCACTGGTGTCAAAGAGGTTGTTGATAAGAGTAAGAGATGTTTATGTATCCTTATCAAAGATCATGATGACCCAAACCTTGGTTTAACTATAAATGTTACCCTTGCCCTTAAGTTACCAAAGGATTGTAACTCACCTACCAATATAACTCAATGTATTGATATTTTGCATTTGAAACCTAAATCACATGAGGCTAAGGTATTTGAGGACTTCCAAAAATCCTTGGAGAAAAATACTTCCACCGCAGTTCCTCCAGCTAGTGGTACCACTGGAAATGAAACAAGCACAATTGCTCAAGACAAGAACGGTGGCGGTTGTGGAAAGAGGTGGCTCTTGGTAGAGGTGCTTTGTGGCATTTTACCATTTGTTTTAGTTTCCTACTTCTTCGTAGTTTGA

Protein sequence

>Msa0700740

MGCKSTTNLSLFSTLIFLVLMFGLVTSDINQDKAECTDKLLTLAGCLPFVTNQAKSPTIDCCTGVKEVVDKSKRCLCILIKDHDDPNLGLTINVTLALKLPKDCNSPTNITQCIDILHLKPKSHEAKVFEDFQKSLEKNTSTAVPPASGTTGNETSTIAQDKNGGGCGKRWLLVEVLCGILPFVLVSYFFVV*