Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0617760 | XP_003629697.1 | 95.876 | 194 | 6 | 1 | 1 | 192 | 1 | 194 | 3.15e-128 | 369 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0617760 | sp|F4I082|LTPG6_ARATH | 41.758 | 182 | 100 | 3 | 10 | 190 | 7 | 183 | 3.95e-42 | 142 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0617760 | G7LHX9 | 95.876 | 194 | 6 | 1 | 1 | 192 | 1 | 194 | 1.50e-128 | 369 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043940 | Msa0617760 | 0.806899 | 6.573613e-50 | -8.615850e-47 |
| Msa0092710 | Msa0617760 | 0.801416 | 9.098162e-49 | -8.615850e-47 |
| Msa0617760 | Msa0656730 | 0.922750 | 6.548460e-89 | -8.615850e-47 |
| Msa0617760 | Msa0667970 | 0.825106 | 5.614974e-54 | -8.615850e-47 |
| Msa0617760 | Msa0700740 | 0.853277 | 2.657633e-61 | -8.615850e-47 |
| Msa0617760 | Msa0760890 | 0.802748 | 4.841281e-49 | -8.615850e-47 |
| Msa0617760 | Msa0848360 | 0.801626 | 8.241009e-49 | -8.615850e-47 |
| Msa0617760 | Msa1080620 | 0.814625 | 1.400376e-51 | -8.615850e-47 |
| Msa0617760 | Msa1080690 | 0.811958 | 5.394818e-51 | -8.615850e-47 |
| Msa0617760 | Msa1305520 | 0.801139 | 1.036517e-48 | -8.615850e-47 |
| Msa0617760 | Msa1412520 | 0.821062 | 4.929575e-53 | -8.615850e-47 |
| Msa0617760 | Msa1439120 | 0.816079 | 6.653811e-52 | -8.615850e-47 |
| Msa0617760 | Msa1455660 | 0.809745 | 1.625555e-50 | -8.615850e-47 |
| Msa0134040 | Msa0617760 | 0.819276 | 1.264227e-52 | -8.615850e-47 |
| Msa0181090 | Msa0617760 | 0.818354 | 2.047789e-52 | -8.615850e-47 |
| Msa0367370 | Msa0617760 | 0.813616 | 2.338786e-51 | -8.615850e-47 |
| Msa0296610 | Msa0617760 | 0.819900 | 9.108405e-53 | -8.615850e-47 |
| Msa0334980 | Msa0617760 | 0.804277 | 2.334135e-49 | -8.615850e-47 |
| Msa0532840 | Msa0617760 | 0.829981 | 3.796757e-55 | -8.615850e-47 |
| Msa0533010 | Msa0617760 | 0.822276 | 2.582658e-53 | -8.615850e-47 |
| Msa0564460 | Msa0617760 | 0.924372 | 7.692476e-90 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0617760 | MtrunA17_Chr8g0378461 | 95.876 | 194 | 6 | 1 | 1 | 192 | 1 | 194 | 2.89e-132 | 369 |
| Msa0617760 | MtrunA17_Chr3g0121381 | 52.353 | 170 | 79 | 1 | 23 | 192 | 18 | 185 | 5.29e-57 | 177 |
| Msa0617760 | MtrunA17_Chr8g0356191 | 38.251 | 183 | 107 | 3 | 15 | 191 | 13 | 195 | 9.50e-39 | 131 |
| Msa0617760 | MtrunA17_Chr7g0219391 | 45.631 | 103 | 52 | 1 | 15 | 113 | 10 | 112 | 4.79e-27 | 99.8 |
| Msa0617760 | MtrunA17_Chr1g0205191 | 40.789 | 76 | 42 | 1 | 33 | 108 | 25 | 97 | 2.90e-12 | 60.8 |
| Msa0617760 | MtrunA17_Chr1g0205181 | 37.736 | 106 | 58 | 3 | 9 | 113 | 6 | 104 | 4.27e-12 | 61.2 |
| Msa0617760 | MtrunA17_Chr5g0395001 | 28.472 | 144 | 93 | 4 | 15 | 157 | 12 | 146 | 2.08e-11 | 59.7 |
| Msa0617760 | MtrunA17_Chr5g0394991 | 34.862 | 109 | 64 | 4 | 10 | 113 | 6 | 112 | 4.67e-11 | 59.7 |
| Msa0617760 | MtrunA17_Chr1g0205201 | 39.024 | 82 | 48 | 2 | 33 | 113 | 25 | 105 | 7.38e-11 | 58.2 |
| Msa0617760 | MtrunA17_Chr5g0429901 | 32.653 | 147 | 79 | 6 | 14 | 149 | 6 | 143 | 9.49e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0617760 | AT1G55260.1 | 41.758 | 182 | 100 | 3 | 10 | 190 | 50 | 226 | 1.01e-42 | 143 |
| Msa0617760 | AT2G44300.1 | 37.745 | 204 | 107 | 5 | 6 | 192 | 3 | 203 | 7.36e-42 | 140 |
| Msa0617760 | AT2G44290.1 | 35.567 | 194 | 107 | 2 | 14 | 192 | 14 | 204 | 1.55e-41 | 139 |
| Msa0617760 | AT1G55260.2 | 41.209 | 182 | 98 | 4 | 10 | 190 | 50 | 223 | 3.71e-41 | 139 |
| Msa0617760 | AT3G58550.1 | 42.308 | 130 | 73 | 1 | 8 | 135 | 10 | 139 | 5.73e-33 | 116 |
| Msa0617760 | AT3G22600.1 | 32.967 | 91 | 60 | 1 | 15 | 105 | 7 | 96 | 6.12e-14 | 67.0 |
| Msa0617760 | AT2G48130.2 | 35.000 | 100 | 63 | 2 | 15 | 113 | 9 | 107 | 1.75e-13 | 65.9 |
| Msa0617760 | AT2G48130.6 | 35.000 | 100 | 63 | 2 | 15 | 113 | 9 | 107 | 1.75e-13 | 65.9 |
| Msa0617760 | AT2G48130.4 | 35.000 | 100 | 63 | 2 | 15 | 113 | 9 | 107 | 1.75e-13 | 65.9 |
| Msa0617760 | AT2G48130.5 | 35.000 | 100 | 63 | 2 | 15 | 113 | 9 | 107 | 1.75e-13 | 65.9 |
| Msa0617760 | AT2G48130.1 | 35.000 | 100 | 63 | 2 | 15 | 113 | 9 | 107 | 1.75e-13 | 65.9 |
| Msa0617760 | AT2G48130.3 | 35.000 | 100 | 63 | 2 | 15 | 113 | 9 | 107 | 1.75e-13 | 65.9 |
| Msa0617760 | AT1G73890.1 | 36.471 | 85 | 54 | 0 | 29 | 113 | 23 | 107 | 4.21e-13 | 65.1 |
| Msa0617760 | AT4G14815.1 | 35.106 | 94 | 57 | 2 | 15 | 108 | 8 | 97 | 1.04e-11 | 60.8 |
| Msa0617760 | AT1G03103.1 | 32.967 | 91 | 57 | 1 | 15 | 105 | 8 | 94 | 3.86e-11 | 59.3 |
| Msa0617760 | AT1G05450.2 | 29.448 | 163 | 103 | 4 | 13 | 169 | 10 | 166 | 7.30e-11 | 59.3 |
Find 64 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAACTAATTGATCCATAAA+AGG | 0.152918 | 4_2:+68454049 | Msa0617760:three_prime_UTR |
| ACCTTAGCCTCATGTGATTT+AGG | 0.238066 | 4_2:-68452053 | None:intergenic |
| ACAATCTATGGTTGGAGATT+TGG | 0.249161 | 4_2:-68451761 | None:intergenic |
| CTATTTCATCATCTTCAAAA+TGG | 0.259507 | 4_2:+68451582 | Msa0617760:exon |
| TACAATCCTTTGGTAACTTA+AGG | 0.268613 | 4_2:-68451891 | None:intergenic |
| GACACCAGTGCAACAATCTA+TGG | 0.281431 | 4_2:-68451773 | None:intergenic |
| ACCAATACATTGAGTTATAT+TGG | 0.304514 | 4_2:-68451923 | None:intergenic |
| TTTATAGTTAAACCAAGGTT+TGG | 0.345145 | 4_2:-68451856 | None:intergenic |
| GAAGGATGGACCCTAATTAA+AGG | 0.348230 | 4_2:-68453999 | None:intergenic |
| GGTCATCATGATCTTTGATA+AGG | 0.380512 | 4_2:-68451834 | None:intergenic |
| ACAATCCTTTGGTAACTTAA+GGG | 0.380953 | 4_2:-68451890 | None:intergenic |
| GACAAGAACGGTGGCGGTTG+TGG | 0.396527 | 4_2:+68453772 | Msa0617760:CDS |
| CGGTGCATTCTGCTTTGTCT+TGG | 0.411232 | 4_2:-68451690 | None:intergenic |
| GACAAACTCCTTACTTTGGC+TGG | 0.412680 | 4_2:+68451712 | Msa0617760:CDS |
| GTAGGTGAGTTACAATCCTT+TGG | 0.416024 | 4_2:-68451901 | None:intergenic |
| TATTTCATCATCTTCAAAAT+GGG | 0.420364 | 4_2:+68451583 | Msa0617760:exon |
| GCTAGTGGTACCACTGGAAA+TGG | 0.420680 | 4_2:+68453730 | Msa0617760:intron |
| TTATAGTTAAACCAAGGTTT+GGG | 0.422627 | 4_2:-68451855 | None:intergenic |
| AAATGTCAACATTTAATAAG+AGG | 0.437356 | 4_2:+68453884 | Msa0617760:three_prime_UTR |
| CTCTTGGTAGAGGTGCTTTG+TGG | 0.443821 | 4_2:+68453805 | Msa0617760:CDS |
| GATATATTATTGCTATATAT+CGG | 0.447365 | 4_2:+68453906 | Msa0617760:three_prime_UTR |
| CAACTAATTGATCCATAAAA+GGG | 0.451943 | 4_2:+68454050 | Msa0617760:three_prime_UTR |
| ACCAATATAACTCAATGTAT+TGG | 0.457228 | 4_2:+68451922 | Msa0617760:CDS |
| CACCGACAAACTCCTTACTT+TGG | 0.466376 | 4_2:+68451708 | Msa0617760:CDS |
| GAAGACAACCAGCCAAAGTA+AGG | 0.470397 | 4_2:-68451720 | None:intergenic |
| ACATGAGGCTAAGGTATTTG+AGG | 0.480429 | 4_2:+68452061 | Msa0617760:CDS |
| ACCTAAATCACATGAGGCTA+AGG | 0.495814 | 4_2:+68452052 | Msa0617760:CDS |
| TTTGTCTTGGTTAATATCTG+AGG | 0.495906 | 4_2:-68451677 | None:intergenic |
| AAGTAGGAAACTAAAACAAA+TGG | 0.516446 | 4_2:-68453835 | None:intergenic |
| AAAGAGGTGGCTCTTGGTAG+AGG | 0.525495 | 4_2:+68453795 | Msa0617760:CDS |
| ACTTCCACCGCAGTTCCTCC+AGG | 0.529242 | 4_2:+68452110 | Msa0617760:CDS |
| CATAAGGACTAGGAAAATCA+AGG | 0.531221 | 4_2:-68451641 | None:intergenic |
| GATCATGATGACCCAAACCT+TGG | 0.532203 | 4_2:+68451844 | Msa0617760:CDS |
| TTGGCTTGATTAGTCACAAA+GGG | 0.535509 | 4_2:-68451742 | None:intergenic |
| TTGTGGAAAGAGGTGGCTCT+TGG | 0.535765 | 4_2:+68453789 | Msa0617760:CDS |
| AGTTCAAACTACGAAGAAGT+AGG | 0.542772 | 4_2:-68453851 | None:intergenic |
| CTTTGGTAACTTAAGGGCAA+GGG | 0.546332 | 4_2:-68451884 | None:intergenic |
| CCTTTGGTAACTTAAGGGCA+AGG | 0.546657 | 4_2:-68451885 | None:intergenic |
| AGGTTACAAGACCAAACATA+AGG | 0.547469 | 4_2:-68451657 | None:intergenic |
| CCAACCATAGATTGTTGCAC+TGG | 0.548725 | 4_2:+68451769 | Msa0617760:CDS |
| CGACCTTGATGTCTAACTAC+GGG | 0.556444 | 4_2:-68454074 | None:intergenic |
| ACGACCTTGATGTCTAACTA+CGG | 0.557088 | 4_2:-68454075 | None:intergenic |
| ATTGCAGCTAGTGGTACCAC+TGG | 0.560811 | 4_2:+68453724 | Msa0617760:intron |
| CCTTGCCCTTAAGTTACCAA+AGG | 0.561963 | 4_2:+68451885 | Msa0617760:CDS |
| ACGGTGGCGGTTGTGGAAAG+AGG | 0.565669 | 4_2:+68453779 | Msa0617760:CDS |
| CAAGACCAAACATAAGGACT+AGG | 0.566810 | 4_2:-68451651 | None:intergenic |
| AGCCAAAGTAAGGAGTTTGT+CGG | 0.567852 | 4_2:-68451710 | None:intergenic |
| TAACACAGACAAGGAAAGGA+AGG | 0.575654 | 4_2:-68454017 | None:intergenic |
| TCAATAACACAGACAAGGAA+AGG | 0.576335 | 4_2:-68454021 | None:intergenic |
| TGTGCTTGTTCCATTTCCAG+TGG | 0.579541 | 4_2:-68453740 | None:intergenic |
| ATACATTGAGTTATATTGGT+AGG | 0.586657 | 4_2:-68451919 | None:intergenic |
| GCTCAAGACAAGAACGGTGG+CGG | 0.587172 | 4_2:+68453766 | Msa0617760:CDS |
| GGTCCCGTAGTTAGACATCA+AGG | 0.593276 | 4_2:+68454071 | Msa0617760:three_prime_UTR |
| ACAGACAAGGAAAGGAAGGA+TGG | 0.594898 | 4_2:-68454013 | None:intergenic |
| CCAGTGCAACAATCTATGGT+TGG | 0.604106 | 4_2:-68451769 | None:intergenic |
| GTGGCGGTTGTGGAAAGAGG+TGG | 0.614207 | 4_2:+68453782 | Msa0617760:CDS |
| TAACATTTATAGTTAAACCA+AGG | 0.621795 | 4_2:-68451861 | None:intergenic |
| TTTGGCTTGATTAGTCACAA+AGG | 0.627914 | 4_2:-68451743 | None:intergenic |
| TTTGAAACCTAAATCACATG+AGG | 0.643872 | 4_2:+68452046 | Msa0617760:CDS |
| TTTACCTGGAGGAACTGCGG+TGG | 0.660595 | 4_2:-68452114 | None:intergenic |
| AAATTTACCTGGAGGAACTG+CGG | 0.666666 | 4_2:-68452117 | None:intergenic |
| ACAATTGCTCAAGACAAGAA+CGG | 0.667135 | 4_2:+68453760 | Msa0617760:CDS |
| TTGTTGCACTGGTGTCAAAG+AGG | 0.679195 | 4_2:+68451780 | Msa0617760:CDS |
| ATTGCTCAAGACAAGAACGG+TGG | 0.760005 | 4_2:+68453763 | Msa0617760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTATTAAAATATTTA+GGG | + | chr4_2:68452968-68452987 | Msa0617760:intron | 0.0% |
| !! | AAGAAAAATGTATAAATAAA+GGG | - | chr4_2:68452658-68452677 | None:intergenic | 10.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | - | chr4_2:68452659-68452678 | None:intergenic | 10.0% |
| !! | AATTAAATATCAAATTTAAC+AGG | - | chr4_2:68453094-68453113 | None:intergenic | 10.0% |
| !!! | TTCTTTTTATCTATGTTATA+AGG | - | chr4_2:68451542-68451561 | None:intergenic | 15.0% |
| !! | AATAGTAAATAAAATTTACC+TGG | - | chr4_2:68452131-68452150 | None:intergenic | 15.0% |
| !!! | TTTTTTTCTATCACATAATA+AGG | + | chr4_2:68452310-68452329 | Msa0617760:intron | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | - | chr4_2:68452657-68452676 | None:intergenic | 15.0% |
| !! | GTTTAAAAATTAATGAAGTA+TGG | + | chr4_2:68452904-68452923 | Msa0617760:intron | 15.0% |
| !!! | TTTTTAAACTTTTAATGCAA+TGG | + | chr4_2:68453269-68453288 | Msa0617760:intron | 15.0% |
| !! | TTCTATTTGTTTGTTTATAT+GGG | - | chr4_2:68453369-68453388 | None:intergenic | 15.0% |
| !! | TTTCTATTTGTTTGTTTATA+TGG | - | chr4_2:68453370-68453389 | None:intergenic | 15.0% |
| !!! | CAATTTCTTTTTTTAAAGTT+AGG | - | chr4_2:68453449-68453468 | None:intergenic | 15.0% |
| !!! | ACAAATAAAAAGTATCATTT+GGG | - | chr4_2:68453537-68453556 | None:intergenic | 15.0% |
| !! | GATATATTATTGCTATATAT+CGG | + | chr4_2:68453906-68453925 | Msa0617760:three_prime_UTR | 15.0% |
| !! | ATAGATAAAAAGAAAACAAG+AGG | + | chr4_2:68451548-68451567 | Msa0617760:five_prime_UTR | 20.0% |
| !! | TATTTCATCATCTTCAAAAT+GGG | + | chr4_2:68451583-68451602 | Msa0617760:exon | 20.0% |
| !! | TAACATTTATAGTTAAACCA+AGG | - | chr4_2:68451864-68451883 | None:intergenic | 20.0% |
| !!! | TGAAACAAATATCAAACTTT+TGG | - | chr4_2:68452015-68452034 | None:intergenic | 20.0% |
| !! | AATATAGAAACAAAAGACTA+AGG | + | chr4_2:68452170-68452189 | Msa0617760:intron | 20.0% |
| !! | TTATTAAAGATCATATAGTG+TGG | - | chr4_2:68452450-68452469 | None:intergenic | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | - | chr4_2:68452524-68452543 | None:intergenic | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | - | chr4_2:68452634-68452653 | None:intergenic | 20.0% |
| !! | GTTTGAAGAGAATAAAAATT+AGG | + | chr4_2:68453060-68453079 | Msa0617760:intron | 20.0% |
| !!! | TGATTTAAAATTTCCACTTT+TGG | - | chr4_2:68453239-68453258 | None:intergenic | 20.0% |
| !! | AAAAAAAGAAATTGATGTAG+AGG | + | chr4_2:68453455-68453474 | Msa0617760:intron | 20.0% |
| !!! | GACAAATAAAAAGTATCATT+TGG | - | chr4_2:68453538-68453557 | None:intergenic | 20.0% |
| !!! | TATTTTTGGATAAAAGTGAT+TGG | + | chr4_2:68453685-68453704 | Msa0617760:intron | 20.0% |
| !! | AAATGTCAACATTTAATAAG+AGG | + | chr4_2:68453884-68453903 | Msa0617760:three_prime_UTR | 20.0% |
| !!! | ATTGTCTTTTTCCTTTAATT+AGG | + | chr4_2:68453988-68454007 | Msa0617760:three_prime_UTR | 20.0% |
| !!! | TTGTCTTTTTCCTTTAATTA+GGG | + | chr4_2:68453989-68454008 | Msa0617760:three_prime_UTR | 20.0% |
| !!! | ATATTTTCGTGATGATAAAT+AGG | + | chr4_2:68454111-68454130 | Msa0617760:three_prime_UTR | 20.0% |
| ! | CTATTTCATCATCTTCAAAA+TGG | + | chr4_2:68451582-68451601 | Msa0617760:exon | 25.0% |
| ! | TTATAGTTAAACCAAGGTTT+GGG | - | chr4_2:68451858-68451877 | None:intergenic | 25.0% |
| ! | TTTATAGTTAAACCAAGGTT+TGG | - | chr4_2:68451859-68451878 | None:intergenic | 25.0% |
| ! | ATACATTGAGTTATATTGGT+AGG | - | chr4_2:68451922-68451941 | None:intergenic | 25.0% |
| ! | ACCAATATAACTCAATGTAT+TGG | + | chr4_2:68451922-68451941 | Msa0617760:CDS | 25.0% |
| ! | ACCAATACATTGAGTTATAT+TGG | - | chr4_2:68451926-68451945 | None:intergenic | 25.0% |
| !! | TATTTTTCTCCAAGGATTTT+TGG | - | chr4_2:68452091-68452110 | None:intergenic | 25.0% |
| ! | AGTAAATAAAATTTACCTGG+AGG | - | chr4_2:68452128-68452147 | None:intergenic | 25.0% |
| !!! | TCCTTGTATTTTACTGATTT+GGG | - | chr4_2:68452205-68452224 | None:intergenic | 25.0% |
| !!! | TTCCTTGTATTTTACTGATT+TGG | - | chr4_2:68452206-68452225 | None:intergenic | 25.0% |
| !! | TTTTCTATCACATAATAAGG+TGG | + | chr4_2:68452313-68452332 | Msa0617760:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | - | chr4_2:68452525-68452544 | None:intergenic | 25.0% |
| !!! | TGAAATGACTCAGTTATTTT+GGG | - | chr4_2:68452546-68452565 | None:intergenic | 25.0% |
| !! | TTGAAATGACTCAGTTATTT+TGG | - | chr4_2:68452547-68452566 | None:intergenic | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | - | chr4_2:68452635-68452654 | None:intergenic | 25.0% |
| !!! | CACTATTTTGATTGACATTT+GGG | - | chr4_2:68452741-68452760 | None:intergenic | 25.0% |
| !!! | TCACTATTTTGATTGACATT+TGG | - | chr4_2:68452742-68452761 | None:intergenic | 25.0% |
| !! | ATCTCATTTGATTTCATTCT+AGG | + | chr4_2:68453626-68453645 | Msa0617760:intron | 25.0% |
| !!! | TGATCTTGCTTGTTTATTTT+TGG | + | chr4_2:68453671-68453690 | Msa0617760:intron | 25.0% |
| ! | AAGTAGGAAACTAAAACAAA+TGG | - | chr4_2:68453838-68453857 | None:intergenic | 25.0% |
| ! | AAAAATCAATAACACAGACA+AGG | - | chr4_2:68454029-68454048 | None:intergenic | 25.0% |
| ! | CAACTAATTGATCCATAAAA+GGG | + | chr4_2:68454050-68454069 | Msa0617760:three_prime_UTR | 25.0% |
| ! | AACTACGTATAAAAATAGAG+AGG | - | chr4_2:68454138-68454157 | None:intergenic | 25.0% |
| ! | AAAAAGAAAACAAGAGGTGT+TGG | + | chr4_2:68451554-68451573 | Msa0617760:five_prime_UTR | 30.0% |
| ! | ATTTTCCTAGTCCTTATGTT+TGG | + | chr4_2:68451646-68451665 | Msa0617760:CDS | 30.0% |
| TTTGTCTTGGTTAATATCTG+AGG | - | chr4_2:68451680-68451699 | None:intergenic | 30.0% | |
| ! | ACAATCCTTTGGTAACTTAA+GGG | - | chr4_2:68451893-68451912 | None:intergenic | 30.0% |
| ! | TACAATCCTTTGGTAACTTA+AGG | - | chr4_2:68451894-68451913 | None:intergenic | 30.0% |
| ! | TTTGAAACCTAAATCACATG+AGG | + | chr4_2:68452046-68452065 | Msa0617760:CDS | 30.0% |
| ACCCAAATCAGTAAAATACA+AGG | + | chr4_2:68452201-68452220 | Msa0617760:intron | 30.0% | |
| AAAATACAAGGAAGTCAAGA+AGG | + | chr4_2:68452213-68452232 | Msa0617760:intron | 30.0% | |
| AAATACAAGGAAGTCAAGAA+GGG | + | chr4_2:68452214-68452233 | Msa0617760:intron | 30.0% | |
| CCTAGGTTTGTATATATCAA+CGG | + | chr4_2:68452254-68452273 | Msa0617760:intron | 30.0% | |
| CTAGGTTTGTATATATCAAC+GGG | + | chr4_2:68452255-68452274 | Msa0617760:intron | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | - | chr4_2:68452650-68452669 | None:intergenic | 30.0% | |
| AAGACTCGAAAAACAAATTG+AGG | + | chr4_2:68453509-68453528 | Msa0617760:intron | 30.0% | |
| AGACTCGAAAAACAAATTGA+GGG | + | chr4_2:68453510-68453529 | Msa0617760:intron | 30.0% | |
| TAACAAAACATGAAGACCTA+AGG | - | chr4_2:68453576-68453595 | None:intergenic | 30.0% | |
| CTTAATAGAGATTAGAGTGA+AGG | - | chr4_2:68453605-68453624 | None:intergenic | 30.0% | |
| AATTCATTAATTGCAGCTAG+TGG | + | chr4_2:68453715-68453734 | Msa0617760:intron | 30.0% | |
| ! | CCTTTTATGGATCAATTAGT+TGG | - | chr4_2:68454052-68454071 | None:intergenic | 30.0% |
| CCAACTAATTGATCCATAAA+AGG | + | chr4_2:68454049-68454068 | Msa0617760:three_prime_UTR | 30.0% | |
| CATAAGGACTAGGAAAATCA+AGG | - | chr4_2:68451644-68451663 | None:intergenic | 35.0% | |
| AGGTTACAAGACCAAACATA+AGG | - | chr4_2:68451660-68451679 | None:intergenic | 35.0% | |
| ! | TTGGCTTGATTAGTCACAAA+GGG | - | chr4_2:68451745-68451764 | None:intergenic | 35.0% |
| !! | TTTGGCTTGATTAGTCACAA+AGG | - | chr4_2:68451746-68451765 | None:intergenic | 35.0% |
| ACAATCTATGGTTGGAGATT+TGG | - | chr4_2:68451764-68451783 | None:intergenic | 35.0% | |
| GGTCATCATGATCTTTGATA+AGG | - | chr4_2:68451837-68451856 | None:intergenic | 35.0% | |
| !! | TTTACTGATTTGGGTCATGT+GGG | - | chr4_2:68452196-68452215 | None:intergenic | 35.0% |
| !!! | TTTTACTGATTTGGGTCATG+TGG | - | chr4_2:68452197-68452216 | None:intergenic | 35.0% |
| GATATATACAAACCTAGGTG+TGG | - | chr4_2:68452252-68452271 | None:intergenic | 35.0% | |
| CCGTTGATATATACAAACCT+AGG | - | chr4_2:68452257-68452276 | None:intergenic | 35.0% | |
| AGAAAATGGGTCAGATATTC+CGG | - | chr4_2:68452511-68452530 | None:intergenic | 35.0% | |
| ACAATTGCTCAAGACAAGAA+CGG | + | chr4_2:68453760-68453779 | Msa0617760:CDS | 35.0% | |
| AGTTCAAACTACGAAGAAGT+AGG | - | chr4_2:68453854-68453873 | None:intergenic | 35.0% | |
| TCAATAACACAGACAAGGAA+AGG | - | chr4_2:68454024-68454043 | None:intergenic | 35.0% | |
| CAAGACCAAACATAAGGACT+AGG | - | chr4_2:68451654-68451673 | None:intergenic | 40.0% | |
| AGCCAAAGTAAGGAGTTTGT+CGG | - | chr4_2:68451713-68451732 | None:intergenic | 40.0% | |
| ! | CTTTGGTAACTTAAGGGCAA+GGG | - | chr4_2:68451887-68451906 | None:intergenic | 40.0% |
| GTAGGTGAGTTACAATCCTT+TGG | - | chr4_2:68451904-68451923 | None:intergenic | 40.0% | |
| ACCTAAATCACATGAGGCTA+AGG | + | chr4_2:68452052-68452071 | Msa0617760:CDS | 40.0% | |
| ACCTTAGCCTCATGTGATTT+AGG | - | chr4_2:68452056-68452075 | None:intergenic | 40.0% | |
| ! | ACATGAGGCTAAGGTATTTG+AGG | + | chr4_2:68452061-68452080 | Msa0617760:CDS | 40.0% |
| TGAGGACTTCCAAAAATCCT+TGG | + | chr4_2:68452079-68452098 | Msa0617760:CDS | 40.0% | |
| !!! | GGTGGAAGTATTTTTCTCCA+AGG | - | chr4_2:68452099-68452118 | None:intergenic | 40.0% |
| AAATTTACCTGGAGGAACTG+CGG | - | chr4_2:68452120-68452139 | None:intergenic | 40.0% | |
| TATACAAACCTAGGTGTGGA+TGG | - | chr4_2:68452248-68452267 | None:intergenic | 40.0% | |
| CATATAGTGTGGTCCAGTAA+GGG | - | chr4_2:68452439-68452458 | None:intergenic | 40.0% | |
| TCATATAGTGTGGTCCAGTA+AGG | - | chr4_2:68452440-68452459 | None:intergenic | 40.0% | |
| ACTTAATACTCCCTTCGTTC+CGG | + | chr4_2:68452489-68452508 | Msa0617760:intron | 40.0% | |
| TCCCAATTTATCTGAGCCAA+GGG | - | chr4_2:68452698-68452717 | None:intergenic | 40.0% | |
| TTGGCTCAGATAAATTGGGA+CGG | + | chr4_2:68452698-68452717 | Msa0617760:intron | 40.0% | |
| ! | CTTTTGGATTCCTTAACCAG+TGG | - | chr4_2:68453223-68453242 | None:intergenic | 40.0% |
| CTGGTTAAGGAATCCAAAAG+TGG | + | chr4_2:68453223-68453242 | Msa0617760:intron | 40.0% | |
| !!! | GGTTGCACAACTTTTAAAGC+AGG | + | chr4_2:68453290-68453309 | Msa0617760:intron | 40.0% |
| CAACGACTCTAAATAGCCTT+AGG | + | chr4_2:68453557-68453576 | Msa0617760:intron | 40.0% | |
| GAAGGATGGACCCTAATTAA+AGG | - | chr4_2:68454002-68454021 | None:intergenic | 40.0% | |
| TAACACAGACAAGGAAAGGA+AGG | - | chr4_2:68454020-68454039 | None:intergenic | 40.0% | |
| ACGACCTTGATGTCTAACTA+CGG | - | chr4_2:68454078-68454097 | None:intergenic | 40.0% | |
| CACCGACAAACTCCTTACTT+TGG | + | chr4_2:68451708-68451727 | Msa0617760:CDS | 45.0% | |
| GACAAACTCCTTACTTTGGC+TGG | + | chr4_2:68451712-68451731 | Msa0617760:CDS | 45.0% | |
| GAAGACAACCAGCCAAAGTA+AGG | - | chr4_2:68451723-68451742 | None:intergenic | 45.0% | |
| CCAGTGCAACAATCTATGGT+TGG | - | chr4_2:68451772-68451791 | None:intergenic | 45.0% | |
| CCAACCATAGATTGTTGCAC+TGG | + | chr4_2:68451769-68451788 | Msa0617760:CDS | 45.0% | |
| GACACCAGTGCAACAATCTA+TGG | - | chr4_2:68451776-68451795 | None:intergenic | 45.0% | |
| ! | TTGTTGCACTGGTGTCAAAG+AGG | + | chr4_2:68451780-68451799 | Msa0617760:CDS | 45.0% |
| GATCATGATGACCCAAACCT+TGG | + | chr4_2:68451844-68451863 | Msa0617760:CDS | 45.0% | |
| ! | CCTTTGGTAACTTAAGGGCA+AGG | - | chr4_2:68451888-68451907 | None:intergenic | 45.0% |
| CCTTGCCCTTAAGTTACCAA+AGG | + | chr4_2:68451885-68451904 | Msa0617760:CDS | 45.0% | |
| TACAAGGAAGTCAAGAAGGG+TGG | + | chr4_2:68452217-68452236 | Msa0617760:intron | 45.0% | |
| TGGAATTTCCATCCACACCT+AGG | + | chr4_2:68452237-68452256 | Msa0617760:intron | 45.0% | |
| GTCAGATATTCCGGAACGAA+GGG | - | chr4_2:68452502-68452521 | None:intergenic | 45.0% | |
| ATCTGTGTGAAATGAGCCCT+TGG | + | chr4_2:68452679-68452698 | Msa0617760:intron | 45.0% | |
| AGCCCTTGGCTCAGATAAAT+TGG | + | chr4_2:68452693-68452712 | Msa0617760:intron | 45.0% | |
| GCCCTTGGCTCAGATAAATT+GGG | + | chr4_2:68452694-68452713 | Msa0617760:intron | 45.0% | |
| GTCCCAATTTATCTGAGCCA+AGG | - | chr4_2:68452699-68452718 | None:intergenic | 45.0% | |
| CTCAGATAAATTGGGACGGA+GGG | + | chr4_2:68452702-68452721 | Msa0617760:intron | 45.0% | |
| !! | GTAGATTTTAACCAGTGCCC+CGG | + | chr4_2:68453196-68453215 | Msa0617760:intron | 45.0% |
| !! | TAGATTTTAACCAGTGCCCC+GGG | + | chr4_2:68453197-68453216 | Msa0617760:intron | 45.0% |
| ! | AGCGTAGCATTGAAACTTCG+AGG | + | chr4_2:68453400-68453419 | Msa0617760:intron | 45.0% |
| !! | TTGAAACTTCGAGGTGTCGA+TGG | + | chr4_2:68453409-68453428 | Msa0617760:intron | 45.0% |
| TGTGCTTGTTCCATTTCCAG+TGG | - | chr4_2:68453743-68453762 | None:intergenic | 45.0% | |
| ATTGCTCAAGACAAGAACGG+TGG | + | chr4_2:68453763-68453782 | Msa0617760:CDS | 45.0% | |
| ACAGACAAGGAAAGGAAGGA+TGG | - | chr4_2:68454016-68454035 | None:intergenic | 45.0% | |
| ! | CTAACTACGGGACCCTTTTA+TGG | - | chr4_2:68454065-68454084 | None:intergenic | 45.0% |
| CGACCTTGATGTCTAACTAC+GGG | - | chr4_2:68454077-68454096 | None:intergenic | 45.0% | |
| !!! | CATATTTTATTAAAATATTT+AGG | + | chr4_2:68452967-68452986 | Msa0617760:intron | 5.0% |
| CGGTGCATTCTGCTTTGTCT+TGG | - | chr4_2:68451693-68451712 | None:intergenic | 50.0% | |
| GTTAATCGAGCTGCCCTTAC+TGG | + | chr4_2:68452423-68452442 | Msa0617760:intron | 50.0% | |
| GGTCAGATATTCCGGAACGA+AGG | - | chr4_2:68452503-68452522 | None:intergenic | 50.0% | |
| GCTCAGATAAATTGGGACGG+AGG | + | chr4_2:68452701-68452720 | Msa0617760:intron | 50.0% | |
| TGACTCTTTAACCAGTGCCC+CGG | + | chr4_2:68453326-68453345 | Msa0617760:intron | 50.0% | |
| AAATGTTAACCAGTGCCCCG+GGG | - | chr4_2:68453346-68453365 | None:intergenic | 50.0% | |
| GAAATGTTAACCAGTGCCCC+GGG | - | chr4_2:68453347-68453366 | None:intergenic | 50.0% | |
| GGAAATGTTAACCAGTGCCC+CGG | - | chr4_2:68453348-68453367 | None:intergenic | 50.0% | |
| ATTGCAGCTAGTGGTACCAC+TGG | + | chr4_2:68453724-68453743 | Msa0617760:intron | 50.0% | |
| GCTAGTGGTACCACTGGAAA+TGG | + | chr4_2:68453730-68453749 | Msa0617760:intron | 50.0% | |
| TTGTGGAAAGAGGTGGCTCT+TGG | + | chr4_2:68453789-68453808 | Msa0617760:CDS | 50.0% | |
| AAAGAGGTGGCTCTTGGTAG+AGG | + | chr4_2:68453795-68453814 | Msa0617760:CDS | 50.0% | |
| !! | CTCTTGGTAGAGGTGCTTTG+TGG | + | chr4_2:68453805-68453824 | Msa0617760:CDS | 50.0% |
| GGTCCCGTAGTTAGACATCA+AGG | + | chr4_2:68454071-68454090 | Msa0617760:three_prime_UTR | 50.0% | |
| TTTACCTGGAGGAACTGCGG+TGG | - | chr4_2:68452117-68452136 | None:intergenic | 55.0% | |
| ATTCCTTAACCAGTGGCCCG+GGG | - | chr4_2:68453216-68453235 | None:intergenic | 55.0% | |
| GATTCCTTAACCAGTGGCCC+GGG | - | chr4_2:68453217-68453236 | None:intergenic | 55.0% | |
| GGATTCCTTAACCAGTGGCC+CGG | - | chr4_2:68453218-68453237 | None:intergenic | 55.0% | |
| GACTCTTTAACCAGTGCCCC+GGG | + | chr4_2:68453327-68453346 | Msa0617760:intron | 55.0% | |
| ACTCTTTAACCAGTGCCCCG+GGG | + | chr4_2:68453328-68453347 | Msa0617760:intron | 55.0% | |
| GCTCAAGACAAGAACGGTGG+CGG | + | chr4_2:68453766-68453785 | Msa0617760:CDS | 55.0% | |
| ACTTCCACCGCAGTTCCTCC+AGG | + | chr4_2:68452110-68452129 | Msa0617760:CDS | 60.0% | |
| ! | GACAAGAACGGTGGCGGTTG+TGG | + | chr4_2:68453772-68453791 | Msa0617760:CDS | 60.0% |
| ! | ACGGTGGCGGTTGTGGAAAG+AGG | + | chr4_2:68453779-68453798 | Msa0617760:CDS | 60.0% |
| GTGGCGGTTGTGGAAAGAGG+TGG | + | chr4_2:68453782-68453801 | Msa0617760:CDS | 60.0% | |
| TAACCAGTGCCCCGGGCCAC+TGG | + | chr4_2:68453204-68453223 | Msa0617760:intron | 70.0% | |
| TAACCAGTGGCCCGGGGCAC+TGG | - | chr4_2:68453210-68453229 | None:intergenic | 70.0% | |
| ! | GTGCCCCGGGCCACTGGTTA+AGG | + | chr4_2:68453210-68453229 | Msa0617760:intron | 70.0% |
| TAACCAGTGCCCCGGGGCAC+TGG | + | chr4_2:68453334-68453353 | Msa0617760:intron | 70.0% | |
| TAACCAGTGCCCCGGGGCAC+TGG | - | chr4_2:68453334-68453353 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 68451492 | 68454165 | 68451492 | ID=Msa0617760;Name=Msa0617760 |
| chr4_2 | mRNA | 68451492 | 68454165 | 68451492 | ID=Msa0617760-mRNA-1;Parent=Msa0617760;Name=Msa0617760-mRNA-1;_AED=0.06;_eAED=0.06;_QI=109|1|1|1|1|1|3|295|192 |
| chr4_2 | exon | 68451492 | 68451943 | 68451492 | ID=Msa0617760-mRNA-1:exon:19628;Parent=Msa0617760-mRNA-1 |
| chr4_2 | exon | 68452036 | 68452131 | 68452036 | ID=Msa0617760-mRNA-1:exon:19629;Parent=Msa0617760-mRNA-1 |
| chr4_2 | exon | 68453731 | 68454165 | 68453731 | ID=Msa0617760-mRNA-1:exon:19630;Parent=Msa0617760-mRNA-1 |
| chr4_2 | five_prime_UTR | 68451492 | 68451600 | 68451492 | ID=Msa0617760-mRNA-1:five_prime_utr;Parent=Msa0617760-mRNA-1 |
| chr4_2 | CDS | 68451601 | 68451943 | 68451601 | ID=Msa0617760-mRNA-1:cds;Parent=Msa0617760-mRNA-1 |
| chr4_2 | CDS | 68452036 | 68452131 | 68452036 | ID=Msa0617760-mRNA-1:cds;Parent=Msa0617760-mRNA-1 |
| chr4_2 | CDS | 68453731 | 68453870 | 68453731 | ID=Msa0617760-mRNA-1:cds;Parent=Msa0617760-mRNA-1 |
| chr4_2 | three_prime_UTR | 68453871 | 68454165 | 68453871 | ID=Msa0617760-mRNA-1:three_prime_utr;Parent=Msa0617760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
