Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704380 | RHN42950.1 | 98.190 | 221 | 3 | 1 | 3 | 222 | 17 | 237 | 6.52e-159 | 449 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704380 | sp|A0A178VBJ0|APSR1_ARATH | 27.027 | 148 | 101 | 3 | 3 | 149 | 384 | 525 | 5.81e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704380 | A0A396GPH5 | 98.190 | 221 | 3 | 1 | 3 | 222 | 17 | 237 | 3.11e-159 | 449 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0658880 | Msa0704380 | 0.871646 | 5.831482e-67 | -8.615850e-47 |
| Msa0670100 | Msa0704380 | 0.806756 | 7.048409e-50 | -8.615850e-47 |
| Msa0704380 | Msa0704410 | 0.949066 | 2.694487e-107 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704380 | MtrunA17_Chr8g0382541 | 98.190 | 221 | 3 | 1 | 3 | 222 | 17 | 237 | 6.00e-163 | 449 |
| Msa0704380 | MtrunA17_Chr5g0440551 | 28.947 | 228 | 128 | 5 | 3 | 212 | 525 | 736 | 1.76e-27 | 109 |
| Msa0704380 | MtrunA17_Chr3g0118401 | 26.522 | 230 | 147 | 4 | 3 | 216 | 541 | 764 | 7.53e-26 | 105 |
| Msa0704380 | MtrunA17_Chr3g0124841 | 36.242 | 149 | 87 | 5 | 3 | 146 | 644 | 789 | 3.58e-22 | 94.4 |
| Msa0704380 | MtrunA17_Chr5g0448571 | 28.070 | 228 | 125 | 6 | 5 | 197 | 533 | 756 | 9.11e-20 | 87.4 |
| Msa0704380 | MtrunA17_Chr3g0130761 | 32.414 | 145 | 90 | 3 | 3 | 146 | 528 | 665 | 7.82e-16 | 75.9 |
| Msa0704380 | MtrunA17_Chr5g0405741 | 29.139 | 151 | 100 | 3 | 3 | 152 | 389 | 533 | 4.42e-15 | 73.6 |
| Msa0704380 | MtrunA17_Chr3g0143731 | 22.785 | 237 | 141 | 7 | 1 | 203 | 454 | 682 | 1.05e-13 | 69.7 |
| Msa0704380 | MtrunA17_Chr4g0072011 | 28.311 | 219 | 139 | 7 | 3 | 208 | 516 | 729 | 1.80e-13 | 68.9 |
| Msa0704380 | MtrunA17_Chr1g0211271 | 27.451 | 153 | 107 | 2 | 3 | 151 | 466 | 618 | 3.94e-13 | 67.8 |
| Msa0704380 | MtrunA17_Chr2g0331821 | 26.531 | 147 | 106 | 2 | 2 | 147 | 496 | 641 | 2.44e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704380 | AT4G39790.1 | 55.399 | 213 | 69 | 3 | 3 | 213 | 468 | 656 | 6.08e-73 | 233 |
| Msa0704380 | AT2G27090.2 | 30.374 | 214 | 141 | 3 | 3 | 211 | 521 | 731 | 2.89e-30 | 118 |
| Msa0704380 | AT2G27090.1 | 30.374 | 214 | 141 | 3 | 3 | 211 | 521 | 731 | 2.89e-30 | 118 |
| Msa0704380 | AT1G21740.1 | 39.860 | 143 | 82 | 3 | 3 | 142 | 685 | 826 | 1.28e-27 | 110 |
| Msa0704380 | AT1G77500.1 | 29.362 | 235 | 130 | 5 | 3 | 201 | 637 | 871 | 3.90e-26 | 106 |
| Msa0704380 | AT4G35240.4 | 28.033 | 239 | 129 | 7 | 3 | 204 | 599 | 831 | 1.32e-23 | 99.0 |
| Msa0704380 | AT4G35240.3 | 28.033 | 239 | 129 | 7 | 3 | 204 | 599 | 831 | 1.32e-23 | 99.0 |
| Msa0704380 | AT4G35240.2 | 28.033 | 239 | 129 | 7 | 3 | 204 | 599 | 831 | 1.38e-23 | 99.0 |
| Msa0704380 | AT4G35240.1 | 28.033 | 239 | 129 | 7 | 3 | 204 | 599 | 831 | 1.38e-23 | 99.0 |
| Msa0704380 | AT2G17110.1 | 27.311 | 238 | 125 | 6 | 3 | 205 | 496 | 720 | 1.82e-20 | 89.7 |
| Msa0704380 | AT2G34670.2 | 30.282 | 142 | 89 | 3 | 3 | 142 | 430 | 563 | 4.91e-13 | 68.2 |
| Msa0704380 | AT1G20530.1 | 29.814 | 161 | 104 | 5 | 2 | 160 | 402 | 555 | 5.89e-13 | 67.8 |
| Msa0704380 | AT3G51290.3 | 27.027 | 148 | 101 | 3 | 3 | 149 | 384 | 525 | 5.90e-13 | 67.8 |
| Msa0704380 | AT3G51290.2 | 27.027 | 148 | 101 | 3 | 3 | 149 | 384 | 525 | 7.83e-13 | 67.4 |
| Msa0704380 | AT1G52320.3 | 29.787 | 141 | 95 | 3 | 5 | 143 | 202 | 340 | 2.04e-12 | 66.2 |
| Msa0704380 | AT1G52320.4 | 29.787 | 141 | 95 | 3 | 5 | 143 | 202 | 340 | 2.04e-12 | 66.2 |
| Msa0704380 | AT1G52320.2 | 29.371 | 143 | 97 | 3 | 3 | 143 | 526 | 666 | 5.15e-12 | 65.1 |
| Msa0704380 | AT1G52320.5 | 29.371 | 143 | 97 | 3 | 3 | 143 | 526 | 666 | 5.15e-12 | 65.1 |
| Msa0704380 | AT1G52320.1 | 29.371 | 143 | 97 | 3 | 3 | 143 | 503 | 643 | 6.30e-12 | 64.7 |
Find 40 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACGATGCTTCGGAAAATT+TGG | 0.223748 | 4_4:+76855427 | None:intergenic |
| CTAGAAGAAATCGAGTTATT+TGG | 0.303994 | 4_4:-76855848 | Msa0704380:CDS |
| ATGTTAATTCTCAACTATAT+AGG | 0.325380 | 4_4:-76855324 | Msa0704380:exon |
| CTTTGTGCTGCTGTATGCTT+TGG | 0.333899 | 4_4:-76855301 | Msa0704380:three_prime_UTR |
| TGAAGATGTATGAAGATATC+AGG | 0.386728 | 4_4:-76855406 | Msa0704380:CDS |
| CTATGCCGTGATTGGTGTGC+TGG | 0.391046 | 4_4:-76855674 | Msa0704380:CDS |
| TTGCTCCTGGTACGTTCCCT+TGG | 0.417781 | 4_4:+76855743 | None:intergenic |
| TGATTGGTGTGCTGGGATCC+AGG | 0.432860 | 4_4:-76855666 | Msa0704380:CDS |
| GTTCTCCCCTCGTCGAGCTC+TGG | 0.440226 | 4_4:-76855714 | Msa0704380:CDS |
| ATTTCTCTGCGTGCATCTCC+TGG | 0.446501 | 4_4:+76855884 | None:intergenic |
| ATACATCTTCAACGATGCTT+CGG | 0.449747 | 4_4:+76855418 | None:intergenic |
| AGAATGATATGCCAAGGAAA+TGG | 0.481755 | 4_4:+76855928 | None:intergenic |
| GTCGGATCTTCACAATCTGA+TGG | 0.481913 | 4_4:-76855600 | Msa0704380:CDS |
| ATTGAGAGCTTCCACATATG+AGG | 0.489050 | 4_4:+76855793 | None:intergenic |
| AACACAACAGGAACCTTGCC+AGG | 0.493027 | 4_4:-76855902 | Msa0704380:CDS |
| TATCATTCTAGAAACACAAC+AGG | 0.503423 | 4_4:-76855914 | Msa0704380:CDS |
| TCTGCGTGCATCTCCTGGCA+AGG | 0.512870 | 4_4:+76855889 | None:intergenic |
| GCAATACATCACCATTTCCT+TGG | 0.515910 | 4_4:-76855939 | Msa0704380:CDS |
| ATGGCTGGTGCAGATTGGTC+AGG | 0.532640 | 4_4:-76855994 | Msa0704380:intron |
| GGTGCAGATTGGTCAGGATG+TGG | 0.543685 | 4_4:-76855988 | Msa0704380:intron |
| TAACAGCCACACCTCATATG+TGG | 0.556807 | 4_4:-76855804 | Msa0704380:CDS |
| TCATATGTGGAAGCTCTCAA+TGG | 0.556987 | 4_4:-76855791 | Msa0704380:CDS |
| TATGCCGTGATTGGTGTGCT+GGG | 0.557768 | 4_4:-76855673 | Msa0704380:CDS |
| GTTCTTCAGAGGGTAAAGCC+TGG | 0.558364 | 4_4:+76855648 | None:intergenic |
| AGAGCTCGACGAGGGGAGAA+CGG | 0.563598 | 4_4:+76855716 | None:intergenic |
| TGCATCACTAAGTTCTTCAG+AGG | 0.575975 | 4_4:+76855637 | None:intergenic |
| GGTCAGTCGATCAAGAACCT+TGG | 0.587010 | 4_4:+76855448 | None:intergenic |
| TGGAGCCAGAGCTCGACGAG+GGG | 0.590546 | 4_4:+76855709 | None:intergenic |
| GGATCCCAGCACACCAATCA+CGG | 0.597262 | 4_4:+76855669 | None:intergenic |
| CACGCAGAGAAATAATGACT+CGG | 0.598054 | 4_4:-76855874 | Msa0704380:CDS |
| GTTTCTAGAATGATATGCCA+AGG | 0.606062 | 4_4:+76855922 | None:intergenic |
| GTGGAGCCAGAGCTCGACGA+GGG | 0.610750 | 4_4:+76855708 | None:intergenic |
| ATGTGGAAGCTCTCAATGGT+TGG | 0.626950 | 4_4:-76855787 | Msa0704380:CDS |
| GCATCACTAAGTTCTTCAGA+GGG | 0.627690 | 4_4:+76855638 | None:intergenic |
| CAGATTGGTCAGGATGTGGA+AGG | 0.631108 | 4_4:-76855984 | Msa0704380:CDS |
| TGTACATGCAAGTTTAACCA+AGG | 0.665329 | 4_4:-76855465 | Msa0704380:CDS |
| ATCAAAACTAATGAAGACAG+CGG | 0.696867 | 4_4:-76855512 | Msa0704380:CDS |
| GAGCTTCCACATATGAGGTG+TGG | 0.703175 | 4_4:+76855798 | None:intergenic |
| AAAACTAATGAAGACAGCGG+AGG | 0.716696 | 4_4:-76855509 | Msa0704380:CDS |
| GGTGGAGCCAGAGCTCGACG+AGG | 0.727010 | 4_4:+76855707 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAACTAATATCATAAAAA+AGG | - | chr4_4:76856724-76856743 | Msa0704380:intron | 10.0% |
| !! | ATAACTAATATCATAAAAAA+GGG | - | chr4_4:76856725-76856744 | Msa0704380:intron | 10.0% |
| !! | AAACAAAAACAACAAAAATA+AGG | + | chr4_4:76855984-76856003 | None:intergenic | 15.0% |
| !!! | TTTTTGTTTTTATGAAATAG+TGG | - | chr4_4:76855995-76856014 | Msa0704380:intron | 15.0% |
| !!! | TTTGACTTGAAATATTAATA+CGG | - | chr4_4:76856466-76856485 | Msa0704380:intron | 15.0% |
| !! | AAAAAATTATTAGTTGGAAA+AGG | - | chr4_4:76856526-76856545 | Msa0704380:intron | 15.0% |
| !! | TAACTAATATCATAAAAAAG+GGG | - | chr4_4:76856726-76856745 | Msa0704380:intron | 15.0% |
| !! | TAAAAGAATTGAAAAAATGA+GGG | - | chr4_4:76857178-76857197 | Msa0704380:intron | 15.0% |
| !!! | TATAACTACTATTTGATTTA+TGG | - | chr4_4:76857344-76857363 | Msa0704380:intron | 15.0% |
| !! | AAGGCTAATAAAGAAAAAAA+TGG | - | chr4_4:76855437-76855456 | Msa0704380:CDS | 20.0% |
| !! | TTTCTCTTAAAATGAAATAG+CGG | + | chr4_4:76855639-76855658 | None:intergenic | 20.0% |
| !! | CTGTTAAACAAAAAAATAAC+AGG | + | chr4_4:76855794-76855813 | None:intergenic | 20.0% |
| !!! | CAACTAATAATTTTTTGTAC+AGG | + | chr4_4:76856522-76856541 | None:intergenic | 20.0% |
| !! | CTGTACAAAAAATTATTAGT+TGG | - | chr4_4:76856520-76856539 | Msa0704380:intron | 20.0% |
| !! | AACTAAATACTCATGTAAAT+TGG | + | chr4_4:76856830-76856849 | None:intergenic | 20.0% |
| !! | ACTATTGAAACTATGAAAAT+TGG | + | chr4_4:76856958-76856977 | None:intergenic | 20.0% |
| !! | CTAAAAGAATTGAAAAAATG+AGG | - | chr4_4:76857177-76857196 | Msa0704380:intron | 20.0% |
| !! | ATGTTAATTCTCAACTATAT+AGG | - | chr4_4:76858033-76858052 | Msa0704380:intron | 20.0% |
| !!! | CATGTTCATAGTTTTTTTTA+GGG | + | chr4_4:76858107-76858126 | None:intergenic | 20.0% |
| !!! | ACATGTTCATAGTTTTTTTT+AGG | + | chr4_4:76858108-76858127 | None:intergenic | 20.0% |
| !! | AGTTTTCCTTCATAGAAAAA+AGG | - | chr4_4:76855296-76855315 | Msa0704380:three_prime_UTR | 25.0% |
| !!! | TTTTTTCTTTATTAGCCTTG+TGG | + | chr4_4:76855436-76855455 | None:intergenic | 25.0% |
| ! | AGAAAATACAAAATTGTCCT+TGG | - | chr4_4:76855654-76855673 | Msa0704380:CDS | 25.0% |
| ! | TCCTTGGTTTAAAAAAAACA+AGG | - | chr4_4:76855670-76855689 | Msa0704380:CDS | 25.0% |
| ! | CCTTGGTTTAAAAAAAACAA+GGG | - | chr4_4:76855671-76855690 | Msa0704380:CDS | 25.0% |
| ! | CCATAATAACAAAGAAAACT+AGG | + | chr4_4:76855850-76855869 | None:intergenic | 25.0% |
| !!! | CCTAGTTTTCTTTGTTATTA+TGG | - | chr4_4:76855847-76855866 | Msa0704380:CDS | 25.0% |
| !! | GTTTTATATGAACAAAACAG+AGG | + | chr4_4:76855927-76855946 | None:intergenic | 25.0% |
| ! | AAAACCATAGTAGTTAATAG+CGG | + | chr4_4:76856082-76856101 | None:intergenic | 25.0% |
| ! | ATCTTGATAGAAACTAGAAA+TGG | - | chr4_4:76856204-76856223 | Msa0704380:intron | 25.0% |
| ! | TACAGGTTCTATACATAAAA+GGG | + | chr4_4:76856505-76856524 | None:intergenic | 25.0% |
| ! | AATTATTAGTTGGAAAAGGA+CGG | - | chr4_4:76856530-76856549 | Msa0704380:intron | 25.0% |
| ! | AAAACTCTATGATGAAGTAA+AGG | - | chr4_4:76856701-76856720 | Msa0704380:intron | 25.0% |
| !! | AAAGTATTTCTAACTGGATA+AGG | - | chr4_4:76856757-76856776 | Msa0704380:intron | 25.0% |
| ! | AAGGAATAAAAACATTCAGA+GGG | + | chr4_4:76856873-76856892 | None:intergenic | 25.0% |
| ! | AAAGGAATAAAAACATTCAG+AGG | + | chr4_4:76856874-76856893 | None:intergenic | 25.0% |
| !!! | GAATGTTTTTATTCCTTTCA+AGG | - | chr4_4:76856876-76856895 | Msa0704380:intron | 25.0% |
| ! | TTTGGATGTCTATTAGTTTG+TGG | - | chr4_4:76855267-76855286 | Msa0704380:three_prime_UTR | 30.0% |
| !! | TTGGATGTCTATTAGTTTGT+GGG | - | chr4_4:76855268-76855287 | Msa0704380:three_prime_UTR | 30.0% |
| !!! | TTTGCCGATTTTGTACAAAA+TGG | + | chr4_4:76855324-76855343 | None:intergenic | 30.0% |
| AATGCATATCAAACATGTAG+CGG | - | chr4_4:76855342-76855361 | Msa0704380:CDS | 30.0% | |
| !!! | CCCTTGTTTTTTTTAAACCA+AGG | + | chr4_4:76855674-76855693 | None:intergenic | 30.0% |
| AACTAGGACAAAAAAGTAAC+AGG | + | chr4_4:76855834-76855853 | None:intergenic | 30.0% | |
| GTACAGGTTCTATACATAAA+AGG | + | chr4_4:76856506-76856525 | None:intergenic | 30.0% | |
| !! | CAGTTGAAAGTATTTCTAAC+TGG | - | chr4_4:76856751-76856770 | Msa0704380:intron | 30.0% |
| ATAAAAACATTCAGAGGGAA+GGG | + | chr4_4:76856868-76856887 | None:intergenic | 30.0% | |
| AATAAAAACATTCAGAGGGA+AGG | + | chr4_4:76856869-76856888 | None:intergenic | 30.0% | |
| ATATAGATAGTAAAGCTTCG+AGG | + | chr4_4:76857279-76857298 | None:intergenic | 30.0% | |
| ! | ACTACTATTTGATTTATGGC+TGG | - | chr4_4:76857348-76857367 | Msa0704380:intron | 30.0% |
| ! | TATCATTCTAGAAACACAAC+AGG | - | chr4_4:76857443-76857462 | Msa0704380:intron | 30.0% |
| CTAGAAGAAATCGAGTTATT+TGG | - | chr4_4:76857509-76857528 | Msa0704380:intron | 30.0% | |
| ! | AACACTGTATACTTTTACCA+AGG | - | chr4_4:76857597-76857616 | Msa0704380:intron | 30.0% |
| ! | ACACTGTATACTTTTACCAA+GGG | - | chr4_4:76857598-76857617 | Msa0704380:intron | 30.0% |
| ! | TGCAATCAGAAACTTTTTGT+CGG | - | chr4_4:76857739-76857758 | Msa0704380:intron | 30.0% |
| ATCAAAACTAATGAAGACAG+CGG | - | chr4_4:76857845-76857864 | Msa0704380:intron | 30.0% | |
| TGAAGATGTATGAAGATATC+AGG | - | chr4_4:76857951-76857970 | Msa0704380:intron | 30.0% | |
| !!! | ATGGAGCCTTTTTTCTATGA+AGG | + | chr4_4:76855305-76855324 | None:intergenic | 35.0% |
| ! | GGCTCCATTTTGTACAAAAT+CGG | - | chr4_4:76855317-76855336 | Msa0704380:three_prime_UTR | 35.0% |
| AAGCTAAGTATGTTGACATG+AGG | - | chr4_4:76855474-76855493 | Msa0704380:CDS | 35.0% | |
| TTACCCATAGTAGTCAATAG+CGG | - | chr4_4:76855499-76855518 | Msa0704380:CDS | 35.0% | |
| ! | TATCCCGCTATAGCATTTTT+GGG | - | chr4_4:76856034-76856053 | Msa0704380:intron | 35.0% |
| !! | TAGTAGTTAATAGCGGATAG+CGG | + | chr4_4:76856075-76856094 | None:intergenic | 35.0% |
| CTATCCGCTATTAACTACTA+TGG | - | chr4_4:76856075-76856094 | Msa0704380:intron | 35.0% | |
| !! | GTGTTTCAAAACTTGTTGCA+AGG | + | chr4_4:76856106-76856125 | None:intergenic | 35.0% |
| !!! | CAACAAGTTTTGAAACACAG+AGG | - | chr4_4:76856108-76856127 | Msa0704380:intron | 35.0% |
| !!! | TTCAAGTCTAGTGCCTTTTT+TGG | - | chr4_4:76856397-76856416 | Msa0704380:intron | 35.0% |
| ! | ATAGATTAGCTGGCCAAAAA+AGG | + | chr4_4:76856413-76856432 | None:intergenic | 35.0% |
| ! | AGGGAAGATATTGATGATAG+TGG | - | chr4_4:76856600-76856619 | Msa0704380:intron | 35.0% |
| TAAAAACATTCAGAGGGAAG+GGG | + | chr4_4:76856867-76856886 | None:intergenic | 35.0% | |
| TTTATTCCTTTCAAGGACAC+AGG | - | chr4_4:76856883-76856902 | Msa0704380:intron | 35.0% | |
| AATTATCCTGTGTCCTTGAA+AGG | + | chr4_4:76856892-76856911 | None:intergenic | 35.0% | |
| TTGCAAATTGATGTCTAAGC+TGG | + | chr4_4:76857061-76857080 | None:intergenic | 35.0% | |
| CATCAATTTGCAAAAGACCA+AGG | - | chr4_4:76857068-76857087 | Msa0704380:intron | 35.0% | |
| TCTGTTAATTCCAGAAGTTG+CGG | + | chr4_4:76857218-76857237 | None:intergenic | 35.0% | |
| !! | CAACTTCTGGAATTAACAGA+GGG | - | chr4_4:76857218-76857237 | Msa0704380:intron | 35.0% |
| !! | AACTTCTGGAATTAACAGAG+GGG | - | chr4_4:76857219-76857238 | Msa0704380:intron | 35.0% |
| AGAATGATATGCCAAGGAAA+TGG | + | chr4_4:76857432-76857451 | None:intergenic | 35.0% | |
| !! | GTTTCTAGAATGATATGCCA+AGG | + | chr4_4:76857438-76857457 | None:intergenic | 35.0% |
| TCACGGCATAGAACAAAAAT+AGG | + | chr4_4:76857674-76857693 | None:intergenic | 35.0% | |
| ! | TTTTTGTTCTATGCCGTGAT+TGG | - | chr4_4:76857675-76857694 | Msa0704380:intron | 35.0% |
| !!! | TTAGTTTTGATCTCGCTTTC+TGG | + | chr4_4:76857836-76857855 | None:intergenic | 35.0% |
| TGTACATGCAAGTTTAACCA+AGG | - | chr4_4:76857892-76857911 | Msa0704380:intron | 35.0% | |
| ATACATCTTCAACGATGCTT+CGG | + | chr4_4:76857942-76857961 | None:intergenic | 35.0% | |
| TATCAGGCAAAAAAGTGAAG+TGG | - | chr4_4:76857967-76857986 | Msa0704380:intron | 35.0% | |
| ! | CTATCCCGCTATAGCATTTT+TGG | - | chr4_4:76856033-76856052 | Msa0704380:intron | 40.0% |
| ! | ATCCCGCTATAGCATTTTTG+GGG | - | chr4_4:76856035-76856054 | Msa0704380:intron | 40.0% |
| TGACCCCAAAAATGCTATAG+CGG | + | chr4_4:76856041-76856060 | None:intergenic | 40.0% | |
| AGCGTAGCTAATAGATTAGC+TGG | + | chr4_4:76856423-76856442 | None:intergenic | 40.0% | |
| ! | TCCCTTTGGCTTCAAAATCA+AGG | - | chr4_4:76856580-76856599 | Msa0704380:intron | 40.0% |
| !!! | CCCTTGATTTTGAAGCCAAA+GGG | + | chr4_4:76856584-76856603 | None:intergenic | 40.0% |
| ! | CCCTTTGGCTTCAAAATCAA+GGG | - | chr4_4:76856581-76856600 | Msa0704380:intron | 40.0% |
| !!! | TCCCTTGATTTTGAAGCCAA+AGG | + | chr4_4:76856585-76856604 | None:intergenic | 40.0% |
| CCATGCATACAATCTGTCAA+GGG | + | chr4_4:76856676-76856695 | None:intergenic | 40.0% | |
| CCTTGACAGATTGTATGCAT+GGG | - | chr4_4:76856674-76856693 | Msa0704380:intron | 40.0% | |
| AGTCATTCTGTGACACCTAT+TGG | - | chr4_4:76856979-76856998 | Msa0704380:intron | 40.0% | |
| GTCATTCTGTGACACCTATT+GGG | - | chr4_4:76856980-76856999 | Msa0704380:intron | 40.0% | |
| !! | GCAACTTCTGGAATTAACAG+AGG | - | chr4_4:76857217-76857236 | Msa0704380:intron | 40.0% |
| GATTTAACGCTCGATTGACA+AGG | + | chr4_4:76857324-76857343 | None:intergenic | 40.0% | |
| GCAATACATCACCATTTCCT+TGG | - | chr4_4:76857418-76857437 | Msa0704380:intron | 40.0% | |
| CACGCAGAGAAATAATGACT+CGG | - | chr4_4:76857483-76857502 | Msa0704380:intron | 40.0% | |
| ! | TTGGTCTGAGTTTTGCAAAC+TGG | - | chr4_4:76857528-76857547 | Msa0704380:intron | 40.0% |
| ATTGAGAGCTTCCACATATG+AGG | + | chr4_4:76857567-76857586 | None:intergenic | 40.0% | |
| TCATATGTGGAAGCTCTCAA+TGG | - | chr4_4:76857566-76857585 | Msa0704380:intron | 40.0% | |
| CGGCATAGAACAAAAATAGG+TGG | + | chr4_4:76857671-76857690 | None:intergenic | 40.0% | |
| GCATCACTAAGTTCTTCAGA+GGG | + | chr4_4:76857722-76857741 | None:intergenic | 40.0% | |
| TGCATCACTAAGTTCTTCAG+AGG | + | chr4_4:76857723-76857742 | None:intergenic | 40.0% | |
| AAAACTAATGAAGACAGCGG+AGG | - | chr4_4:76857848-76857867 | Msa0704380:intron | 40.0% | |
| CAACGATGCTTCGGAAAATT+TGG | + | chr4_4:76857933-76857952 | None:intergenic | 40.0% | |
| TCAATGCCTGGCAATAGAAC+AGG | - | chr4_4:76855404-76855423 | Msa0704380:CDS | 45.0% | |
| ! | TGGCCGCTATTGACTACTAT+GGG | + | chr4_4:76855505-76855524 | None:intergenic | 45.0% |
| ! | TTGGCCGCTATTGACTACTA+TGG | + | chr4_4:76855506-76855525 | None:intergenic | 45.0% |
| ATAGCGTTGCAGTGAGATAG+CGG | - | chr4_4:76855580-76855599 | Msa0704380:CDS | 45.0% | |
| ACAGAACAGCAGAAAAGCAG+AGG | + | chr4_4:76855713-76855732 | None:intergenic | 45.0% | |
| AGAGAGAGCAGAATGGAGTT+TGG | + | chr4_4:76855876-76855895 | None:intergenic | 45.0% | |
| CAGAAACAGAGAGAGCAGAA+TGG | + | chr4_4:76855883-76855902 | None:intergenic | 45.0% | |
| GACCCCAAAAATGCTATAGC+GGG | + | chr4_4:76856040-76856059 | None:intergenic | 45.0% | |
| GTTGCAAGCTGAGAACAGAT+AGG | - | chr4_4:76856311-76856330 | Msa0704380:intron | 45.0% | |
| GTTCTGCTTCAGCTCAGATT+GGG | + | chr4_4:76856345-76856364 | None:intergenic | 45.0% | |
| AGTTCTGCTTCAGCTCAGAT+TGG | + | chr4_4:76856346-76856365 | None:intergenic | 45.0% | |
| !!! | TTTTGAAGCCAAAGGGATCC+TGG | + | chr4_4:76856577-76856596 | None:intergenic | 45.0% |
| GAAGAGTTCTGCATGATTGC+TGG | - | chr4_4:76856636-76856655 | Msa0704380:intron | 45.0% | |
| TGCATACAATCTGTCAAGGG+TGG | + | chr4_4:76856673-76856692 | None:intergenic | 45.0% | |
| CCCTTGACAGATTGTATGCA+TGG | - | chr4_4:76856673-76856692 | Msa0704380:intron | 45.0% | |
| CCCATGCATACAATCTGTCA+AGG | + | chr4_4:76856677-76856696 | None:intergenic | 45.0% | |
| CTGCATACAGATAGCCCAAT+AGG | + | chr4_4:76856997-76857016 | None:intergenic | 45.0% | |
| CTATTGGGCTATCTGTATGC+AGG | - | chr4_4:76856995-76857014 | Msa0704380:intron | 45.0% | |
| TCGATCATAGACCTTCCTGA+TGG | + | chr4_4:76857030-76857049 | None:intergenic | 45.0% | |
| TCAAGTGATCGACAAGACCA+GGG | - | chr4_4:76857094-76857113 | Msa0704380:intron | 45.0% | |
| AGAGTTGTATCCGCAACTTC+TGG | - | chr4_4:76857205-76857224 | Msa0704380:intron | 45.0% | |
| GATTTATGGCTGGTGCAGAT+TGG | - | chr4_4:76857358-76857377 | Msa0704380:intron | 45.0% | |
| TAACAGCCACACCTCATATG+TGG | - | chr4_4:76857553-76857572 | Msa0704380:intron | 45.0% | |
| ATGTGGAAGCTCTCAATGGT+TGG | - | chr4_4:76857570-76857589 | Msa0704380:intron | 45.0% | |
| ! | TTTTACCAAGGGAACGTACC+AGG | - | chr4_4:76857609-76857628 | Msa0704380:intron | 45.0% |
| GTCGGATCTTCACAATCTGA+TGG | - | chr4_4:76857757-76857776 | Msa0704380:intron | 45.0% | |
| GGCAAAAAAGTGAAGTGGCT+CGG | - | chr4_4:76857972-76857991 | Msa0704380:intron | 45.0% | |
| ! | CTTTGTGCTGCTGTATGCTT+TGG | - | chr4_4:76858056-76858075 | Msa0704380:intron | 45.0% |
| ! | CTTTTAGCGCAGTCAATGCC+TGG | - | chr4_4:76855392-76855411 | Msa0704380:CDS | 50.0% |
| CATGTGCCTGTTCTATTGCC+AGG | + | chr4_4:76855413-76855432 | None:intergenic | 50.0% | |
| TAGAACAGGCACATGCCACA+AGG | - | chr4_4:76855418-76855437 | Msa0704380:CDS | 50.0% | |
| GCTATCTCACTGCAACGCTA+TGG | + | chr4_4:76855581-76855600 | None:intergenic | 50.0% | |
| GAGCAAACGCGACAAAGTAG+AGG | + | chr4_4:76855765-76855784 | None:intergenic | 50.0% | |
| !! | CTGTGCTGACTCAGCACAAT+TGG | - | chr4_4:76856364-76856383 | Msa0704380:intron | 50.0% |
| ! | CTTTTCGATCATCCTCGTCC+AGG | - | chr4_4:76856556-76856575 | Msa0704380:intron | 50.0% |
| ATCTGTCAAGGGTGGACGAA+TGG | + | chr4_4:76856665-76856684 | None:intergenic | 50.0% | |
| TGCAGGCTAGTGAATCCATC+AGG | - | chr4_4:76857012-76857031 | Msa0704380:intron | 50.0% | |
| GGCTAGTGAATCCATCAGGA+AGG | - | chr4_4:76857016-76857035 | Msa0704380:intron | 50.0% | |
| TGTCGATCACTTGAGTGCCT+TGG | + | chr4_4:76857088-76857107 | None:intergenic | 50.0% | |
| CTCAAGTGATCGACAAGACC+AGG | - | chr4_4:76857093-76857112 | Msa0704380:intron | 50.0% | |
| TCTGCACTCGCGAATTAGAG+TGG | - | chr4_4:76857130-76857149 | Msa0704380:intron | 50.0% | |
| ! | CAGATTGGTCAGGATGTGGA+AGG | - | chr4_4:76857373-76857392 | Msa0704380:intron | 50.0% |
| AACACAACAGGAACCTTGCC+AGG | - | chr4_4:76857455-76857474 | Msa0704380:intron | 50.0% | |
| ATTTCTCTGCGTGCATCTCC+TGG | + | chr4_4:76857476-76857495 | None:intergenic | 50.0% | |
| GAGCTTCCACATATGAGGTG+TGG | + | chr4_4:76857562-76857581 | None:intergenic | 50.0% | |
| TATGCCGTGATTGGTGTGCT+GGG | - | chr4_4:76857684-76857703 | Msa0704380:intron | 50.0% | |
| GTTCTTCAGAGGGTAAAGCC+TGG | + | chr4_4:76857712-76857731 | None:intergenic | 50.0% | |
| GGTCAGTCGATCAAGAACCT+TGG | + | chr4_4:76857912-76857931 | None:intergenic | 50.0% | |
| ! | AACGCGTCGTAGCGGTTTTG+CGG | - | chr4_4:76855606-76855625 | Msa0704380:CDS | 55.0% |
| ATCCTCGTCCAGGATCCCTT+TGG | - | chr4_4:76856566-76856585 | Msa0704380:intron | 55.0% | |
| CAAGACCAGGGCAGTTGTGA+AGG | - | chr4_4:76857106-76857125 | Msa0704380:intron | 55.0% | |
| CAGATCCTTCACAACTGCCC+TGG | + | chr4_4:76857114-76857133 | None:intergenic | 55.0% | |
| ! | ATGGCTGGTGCAGATTGGTC+AGG | - | chr4_4:76857363-76857382 | Msa0704380:intron | 55.0% |
| ! | GGTGCAGATTGGTCAGGATG+TGG | - | chr4_4:76857369-76857388 | Msa0704380:intron | 55.0% |
| TTGCTCCTGGTACGTTCCCT+TGG | + | chr4_4:76857617-76857636 | None:intergenic | 55.0% | |
| ! | GGAGAACGGTCTTTTGCTCC+TGG | + | chr4_4:76857630-76857649 | None:intergenic | 55.0% |
| CTATGCCGTGATTGGTGTGC+TGG | - | chr4_4:76857683-76857702 | Msa0704380:intron | 55.0% | |
| GGATCCCAGCACACCAATCA+CGG | + | chr4_4:76857691-76857710 | None:intergenic | 55.0% | |
| TGATTGGTGTGCTGGGATCC+AGG | - | chr4_4:76857691-76857710 | Msa0704380:intron | 55.0% | |
| GGCCAATAGCGCCGCTATAG+CGG | - | chr4_4:76855520-76855539 | Msa0704380:CDS | 60.0% | |
| !! | TGGCTTGTTGCGTAGCGCTC+CGG | + | chr4_4:76855561-76855580 | None:intergenic | 60.0% |
| AGCCAAAGGGATCCTGGACG+AGG | + | chr4_4:76856571-76856590 | None:intergenic | 60.0% | |
| TCTGCGTGCATCTCCTGGCA+AGG | + | chr4_4:76857471-76857490 | None:intergenic | 60.0% | |
| AGAGCTCGACGAGGGGAGAA+CGG | + | chr4_4:76857644-76857663 | None:intergenic | 60.0% | |
| GGCCGCTATAGCGGCGCTAT+TGG | + | chr4_4:76855525-76855544 | None:intergenic | 65.0% | |
| ! | TAGCGGATAGCGGCGCGTAG+CGG | + | chr4_4:76856065-76856084 | None:intergenic | 65.0% |
| GTTCTCCCCTCGTCGAGCTC+TGG | - | chr4_4:76857643-76857662 | Msa0704380:intron | 65.0% | |
| TGGAGCCAGAGCTCGACGAG+GGG | + | chr4_4:76857651-76857670 | None:intergenic | 65.0% | |
| GTGGAGCCAGAGCTCGACGA+GGG | + | chr4_4:76857652-76857671 | None:intergenic | 65.0% | |
| AGCGGCGCAACGCGTCGTAG+CGG | - | chr4_4:76855598-76855617 | Msa0704380:CDS | 70.0% | |
| GGTGGAGCCAGAGCTCGACG+AGG | + | chr4_4:76857653-76857672 | None:intergenic | 70.0% | |
| GCACCGCGCGGCCGCTATAG+CGG | + | chr4_4:76855534-76855553 | None:intergenic | 75.0% | |
| GCTATAGCGGCCGCGCGGTG+CGG | - | chr4_4:76855533-76855552 | Msa0704380:CDS | 75.0% | |
| ! | GCGCCGCTATAGCGGCCGCG+CGG | - | chr4_4:76855528-76855547 | Msa0704380:CDS | 80.0% |
| ! | CGCTCCGGCACCGCACCGCG+CGG | + | chr4_4:76855546-76855565 | None:intergenic | 85.0% |
| ! | GCGGCCGCGCGGTGCGGTGC+CGG | - | chr4_4:76855539-76855558 | Msa0704380:CDS | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 76855250 | 76858129 | 76855250 | ID=Msa0704380;Name=Msa0704380 |
| chr4_4 | mRNA | 76855250 | 76858129 | 76855250 | ID=Msa0704380-mRNA-1;Parent=Msa0704380;Name=Msa0704380-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0|0.5|0.5|0|0.5|2|90|222 |
| chr4_4 | exon | 76855250 | 76856003 | 76855250 | ID=Msa0704380-mRNA-1:exon:24198;Parent=Msa0704380-mRNA-1 |
| chr4_4 | exon | 76858125 | 76858129 | 76858125 | ID=Msa0704380-mRNA-1:exon:24197;Parent=Msa0704380-mRNA-1 |
| chr4_4 | CDS | 76858125 | 76858129 | 76858125 | ID=Msa0704380-mRNA-1:cds;Parent=Msa0704380-mRNA-1 |
| chr4_4 | CDS | 76855340 | 76856003 | 76855340 | ID=Msa0704380-mRNA-1:cds;Parent=Msa0704380-mRNA-1 |
| chr4_4 | three_prime_UTR | 76855250 | 76855339 | 76855250 | ID=Msa0704380-mRNA-1:three_prime_utr;Parent=Msa0704380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
