AlfalfaGEDB | Msa0670100

M. sativa cultivar zhongmu-4 / Msa0670100

KEGG: K14500
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0670100	XP_013454953.1	98.990	495	5	0	1	495	1	495	0.0	1026

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0670100	sp\|Q9M324\|BSK6_ARATH	79.184	490	96	3	1	488	1	486	0.0	825

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0670100	A0A072USY8	98.990	495	5	0	1	495	1	495	0.0	1026

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000050	Msa0670100	0.830078	3.595311e-55	-8.615850e-47
Msa0001940	Msa0670100	0.807156	5.798937e-50	-8.615850e-47
Msa0002580	Msa0670100	0.801665	8.088169e-49	-8.615850e-47
Msa0005890	Msa0670100	0.839381	1.639696e-57	-8.615850e-47
Msa0009180	Msa0670100	0.800237	1.583386e-48	-8.615850e-47
Msa0017670	Msa0670100	0.815594	8.535817e-52	-8.615850e-47
Msa0017950	Msa0670100	0.809086	2.250920e-50	-8.615850e-47
Msa0019900	Msa0670100	0.833344	5.629653e-56	-8.615850e-47
Msa0024550	Msa0670100	0.809977	1.449041e-50	-8.615850e-47
Msa0025720	Msa0670100	0.803927	2.759952e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0670100	MtrunA17_Chr4g0032361	75.000	492	122	1	1	491	1	492	0.0	784
Msa0670100	MtrunA17_Chr4g0008911	96.623	385	12	1	1	384	1	385	0.0	771
Msa0670100	MtrunA17_Chr8g0349041	72.485	487	130	1	1	487	1	483	0.0	738
Msa0670100	MtrunA17_Chr7g0247441	70.961	489	139	1	1	489	1	486	0.0	727
Msa0670100	MtrunA17_Chr8g0386761	69.371	493	145	3	1	491	1	489	0.0	704
Msa0670100	MtrunA17_Chr4g0054861	65.111	450	157	0	39	488	43	492	0.0	626
Msa0670100	MtrunA17_Chr5g0448561	63.312	477	170	4	19	493	49	522	0.0	621
Msa0670100	MtrunA17_Chr2g0328731	56.040	298	75	5	78	375	2	243	2.75e-104	312
Msa0670100	MtrunA17_Chr4g0008931	99.115	113	1	0	383	495	1	113	1.41e-77	238
Msa0670100	MtrunA17_Chr2g0328171	38.127	299	157	9	44	314	62	360	1.12e-47	170

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0670100	AT3G54030.1	79.184	490	96	3	1	488	1	486	825
Msa0670100	AT5G59010.1	76.578	491	111	1	1	491	1	487	793
Msa0670100	AT4G00710.1	72.485	487	128	4	1	487	1	481	718
Msa0670100	AT4G00710.2	72.485	487	128	4	1	487	1	481	718
Msa0670100	AT1G63500.1	73.856	459	116	2	32	490	32	486	717
Msa0670100	AT5G41260.1	68.507	489	150	1	1	489	1	485	702
Msa0670100	AT4G35230.1	65.563	453	154	2	39	490	56	507	634
Msa0670100	AT1G01740.2	65.574	488	156	5	1	488	1	476	623
Msa0670100	AT1G01740.1	65.574	488	156	5	1	488	1	476	623
Msa0670100	AT5G59010.2	81.513	357	66	0	135	491	1	357	621

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Find 119 sgRNAs with CRISPR-Local

Find 291 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACAAACCTTGGTCAG+AGG	0.623900	4_4:+12190510	None:intergenic
AAAATGGTCATTGACGAAAA+TGG	0.314376	4_4:+12185760	Msa0670090:intron
AAACAAGATATGCAGTCAAA+AGG	0.480134	4_4:+12185649	Msa0670090:intron
AAACTGTACTCATGAAAACT+AGG	0.548981	4_4:+12190282	None:intergenic
AACAATGAATTGTCGAGAAT+CGG	0.387156	4_4:+12190113	None:intergenic
AACATAAATGGATAAAAGTT+GGG	0.410881	4_4:+12190721	None:intergenic
AACGTTTCAACAAGTTCGCT+TGG	0.507748	4_4:-12190137	Msa0670100:CDS
AAGAAGGAACTGAAGGTTGA+AGG	0.478077	4_4:+12190613	None:intergenic
AAGAGCTTGAGCTAAATAGA+AGG	0.470861	4_4:+12189345	None:intergenic
AAGTGTACTCATAGACCAAA+TGG	0.411470	4_4:-12190676	Msa0670100:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATAAAAGTTGGGAATGCAAA+AGG	+	chr4_4:12185724-12185743	Msa0670090:intron	30.0%
TTCCTTCTTATTCTTCTTCA+TGG	-	chr4_4:12185854-12185873	Msa0670100:CDS	30.0%
TCCTTCTTATTCTTCTTCAT+GGG	-	chr4_4:12185855-12185874	Msa0670100:CDS	30.0%
ACAAAGTAAAACACAAACCT+TGG	+	chr4_4:12185953-12185972	Msa0670090:intron	30.0%
TTCAATGGAATTACATGTGT+CGG	+	chr4_4:12186047-12186066	Msa0670090:intron	30.0%
AAACTGTACTCATGAAAACT+AGG	+	chr4_4:12186174-12186193	Msa0670090:intron	30.0%
TTCCCTTTGTAAACAACATT+TGG	+	chr4_4:12186267-12186286	Msa0670090:intron	30.0%
AACAATGAATTGTCGAGAAT+CGG	+	chr4_4:12186343-12186362	Msa0670090:intron	30.0%
TCATGCAAGATATTATCTTG+CGG	-	chr4_4:12186403-12186422	Msa0670100:intron	30.0%
ATCACATCGATAATCTACAT+TGG	+	chr4_4:12186483-12186502	Msa0670090:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	12185604	12190871	12185604	ID=Msa0670100;Name=Msa0670100
chr4_4	mRNA	12185604	12190871	12185604	ID=Msa0670100-mRNA-1;Parent=Msa0670100;Name=Msa0670100-mRNA-1;_AED=0.21;_eAED=0.21;_QI=269\|1\|1\|1\|1\|1\|10\|247\|495
chr4_4	exon	12185604	12186105	12185604	ID=Msa0670100-mRNA-1:exon:3753;Parent=Msa0670100-mRNA-1
chr4_4	exon	12186922	12187035	12186922	ID=Msa0670100-mRNA-1:exon:3752;Parent=Msa0670100-mRNA-1
chr4_4	exon	12187162	12187326	12187162	ID=Msa0670100-mRNA-1:exon:3751;Parent=Msa0670100-mRNA-1
chr4_4	exon	12188048	12188236	12188048	ID=Msa0670100-mRNA-1:exon:3750;Parent=Msa0670100-mRNA-1
chr4_4	exon	12188533	12188618	12188533	ID=Msa0670100-mRNA-1:exon:3749;Parent=Msa0670100-mRNA-1
chr4_4	exon	12188885	12188990	12188885	ID=Msa0670100-mRNA-1:exon:3748;Parent=Msa0670100-mRNA-1
chr4_4	exon	12189276	12189409	12189276	ID=Msa0670100-mRNA-1:exon:3747;Parent=Msa0670100-mRNA-1
chr4_4	exon	12189691	12189826	12189691	ID=Msa0670100-mRNA-1:exon:3746;Parent=Msa0670100-mRNA-1
chr4_4	exon	12190116	12190336	12190116	ID=Msa0670100-mRNA-1:exon:3745;Parent=Msa0670100-mRNA-1
chr4_4	exon	12190521	12190871	12190521	ID=Msa0670100-mRNA-1:exon:3744;Parent=Msa0670100-mRNA-1
chr4_4	five_prime_UTR	12190603	12190871	12190603	ID=Msa0670100-mRNA-1:five_prime_utr;Parent=Msa0670100-mRNA-1
chr4_4	CDS	12190521	12190602	12190521	ID=Msa0670100-mRNA-1:cds;Parent=Msa0670100-mRNA-1
chr4_4	CDS	12190116	12190336	12190116	ID=Msa0670100-mRNA-1:cds;Parent=Msa0670100-mRNA-1
chr4_4	CDS	12189691	12189826	12189691	ID=Msa0670100-mRNA-1:cds;Parent=Msa0670100-mRNA-1
chr4_4	CDS	12189276	12189409	12189276	ID=Msa0670100-mRNA-1:cds;Parent=Msa0670100-mRNA-1
chr4_4	CDS	12188885	12188990	12188885	ID=Msa0670100-mRNA-1:cds;Parent=Msa0670100-mRNA-1
chr4_4	CDS	12188533	12188618	12188533	ID=Msa0670100-mRNA-1:cds;Parent=Msa0670100-mRNA-1
chr4_4	CDS	12188048	12188236	12188048	ID=Msa0670100-mRNA-1:cds;Parent=Msa0670100-mRNA-1
chr4_4	CDS	12187162	12187326	12187162	ID=Msa0670100-mRNA-1:cds;Parent=Msa0670100-mRNA-1
chr4_4	CDS	12186922	12187035	12186922	ID=Msa0670100-mRNA-1:cds;Parent=Msa0670100-mRNA-1
chr4_4	CDS	12185851	12186105	12185851	ID=Msa0670100-mRNA-1:cds;Parent=Msa0670100-mRNA-1
chr4_4	three_prime_UTR	12185604	12185850	12185604	ID=Msa0670100-mRNA-1:three_prime_utr;Parent=Msa0670100-mRNA-1

Gene Sequence

>Msa0670100

ATGGGTGGTCGTTGCTCTAAATTCTCTTTCTGCTGGTTCCACTCTCATCTCAATACTTCTGTTCTTGAATCCTCTGACCAAGAAAATGGTGGCAAGAGTGAAAAAAACTTGTGGCCTAGTTTTCATGAGTACAGTTTGGAAGAATTGAAGGCTGCTACAAATGGTTTCTCCTCGGAAAACATAGTTTCTGAGCATGGTGAGAAAGCTCCAAATGTTGTTTACAAAGGGAAACTTGAGAATGGACAGTTGATTGCCGTCAAACGTTTCAACAAGTTCGCTTGGCCCGATTCTCGACAATTCATTGAAGAATCTAAACAAGTGGGGAACCTTAGAAGTGATCGTTTGGCGAATTTGATTGGTTGTTGCTATGAAGGAGATGAGAGGCTGCTAGTGGCAGAGTTTATGCCACATGAAACTCTGGCTAAGCATCTCTTTCATTGGGAGTCACAGCCCATGAAATGGGCAATGAGATTGAGAGTGGCCTTCTATTTAGCTCAAGCTCTTGAATATTGTACAAGTAAAGGAAGGGGGTTGTATCATGATCTCAATGCCTATAGGATCTTGTTTGATCAGGATGGTAATCCAAGGTTATCTTGCTTTGGACTGATGAAGAACAGCAGAGATGGCAAGAGTTACAGTACAAACTTGGCTTTCACCCCTCCTGAGTACTTAAGGACAGGTAGAGTGACAGCAGAGAGTGTGGTTTACAGTTTTGGAACTTTGTTGCTTGATCTCTTGAGTGGTAAACATATTCCACCAAGCCATGCACTTGATCTGATACGTGGCAAAAATTATTTGATGTTGATGGATTCTGCATTAGAGGGTCACTTTTCAAAGGATGATGGAACTGAGTTAGTTCGTTTGGCTTCACGTTGTTTACAATATGAAGCTCGTGAGAGACCAAATGCAAAGTCTCTAGTTGAAACTCTTATGTCACTTCAGAAAGAAACAGAGGTTCCCTCACATGTTCTGATGGGTCTAAAGCAAGAAACAGAATCATCAACAAAGCCATTGTCATTGACATCTTTTGGTGAATCATGTTTGAGATTGGATCTTACTGCCATACATGCAATATTAGAGAAGACTGGTTACAAAGATGATGAAGGAATTGCTAATGAGCTTTCTTTTCAATTGTGGACTAGTCAAATGCAAGAGACCTTGAATTTGAAGAAACATGGAGATGCTGCTTTTCGAGCTAAGGACTTTGTCACAGCCATTGACTGCTACACACAATTCATAGATGGAGGGACCATGGTGTCACCTACAGTGTATGCAAGGCGCTGCTTGTCTTATTTGATGAATGACATGGCACAGGAAGCTCTAGGGGATGCCATGCAAGCTCAAGTGGTATCTCCAGAGTGGCCTACTGCTTTATATCTACAAGCAACTTGTCTTTTCAGCCTTGGAATGGAAAATGATGCACAAGAGACTCTCAAAGATGGAACTAACGTGGAAGCTAAAAAGCATAAAAATTTGAAAACTGTATAG

Protein sequence

>Msa0670100

MGGRCSKFSFCWFHSHLNTSVLESSDQENGGKSEKNLWPSFHEYSLEELKAATNGFSSENIVSEHGEKAPNVVYKGKLENGQLIAVKRFNKFAWPDSRQFIEESKQVGNLRSDRLANLIGCCYEGDERLLVAEFMPHETLAKHLFHWESQPMKWAMRLRVAFYLAQALEYCTSKGRGLYHDLNAYRILFDQDGNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTAESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNYLMLMDSALEGHFSKDDGTELVRLASRCLQYEARERPNAKSLVETLMSLQKETEVPSHVLMGLKQETESSTKPLSLTSFGESCLRLDLTAIHAILEKTGYKDDEGIANELSFQLWTSQMQETLNLKKHGDAAFRAKDFVTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMAQEALGDAMQAQVVSPEWPTALYLQATCLFSLGMENDAQETLKDGTNVEAKKHKNLKTV*