Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704440 | XP_003630057.2 | 97.826 | 506 | 11 | 0 | 1 | 506 | 1 | 506 | 0.0 | 1026 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704440 | sp|Q7Z9L3|EXGA_ASPOR | 29.032 | 341 | 181 | 9 | 208 | 500 | 61 | 388 | 6.59e-41 | 154 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704440 | G7LAD4 | 97.826 | 506 | 11 | 0 | 1 | 506 | 1 | 506 | 0.0 | 1026 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0052380 | Msa0704440 | 0.802288 | 6.024998e-49 | -8.615850e-47 |
| Msa0704440 | Msa0704510 | 0.949526 | 1.064514e-107 | -8.615850e-47 |
| Msa0704440 | Msa0704520 | 0.902315 | 1.099124e-78 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704440 | MtrunA17_Chr8g0382641 | 97.826 | 506 | 11 | 0 | 1 | 506 | 1 | 506 | 0.0 | 1026 |
| Msa0704440 | MtrunA17_Chr3g0079451 | 66.387 | 476 | 155 | 3 | 31 | 506 | 3 | 473 | 0.0 | 677 |
| Msa0704440 | MtrunA17_Chr3g0079461 | 65.336 | 476 | 160 | 4 | 31 | 506 | 27 | 497 | 0.0 | 652 |
| Msa0704440 | MtrunA17_Chr3g0079441 | 61.055 | 493 | 185 | 5 | 14 | 506 | 6 | 491 | 0.0 | 635 |
| Msa0704440 | MtrunA17_Chr3g0079431 | 61.134 | 494 | 181 | 6 | 14 | 506 | 6 | 489 | 0.0 | 632 |
| Msa0704440 | MtrunA17_Chr5g0425361 | 55.186 | 511 | 215 | 7 | 1 | 506 | 6 | 507 | 0.0 | 583 |
| Msa0704440 | MtrunA17_Chr5g0425401 | 54.134 | 508 | 218 | 8 | 4 | 506 | 8 | 505 | 0.0 | 557 |
| Msa0704440 | MtrunA17_Chr3g0123661 | 47.599 | 479 | 239 | 7 | 33 | 506 | 34 | 505 | 2.79e-154 | 450 |
| Msa0704440 | MtrunA17_Chr5g0425351 | 42.920 | 226 | 86 | 6 | 226 | 448 | 19 | 204 | 3.17e-52 | 176 |
| Msa0704440 | MtrunA17_Chr5g0425301 | 54.545 | 77 | 34 | 1 | 378 | 453 | 1 | 77 | 3.92e-20 | 84.7 |
| Msa0704440 | MtrunA17_Chr5g0425291 | 56.140 | 57 | 24 | 1 | 222 | 278 | 17 | 72 | 5.81e-17 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 114 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCCATTGGGAAACTTTC+AGG | 0.085311 | 4_4:-76920028 | Msa0704440:CDS |
| AAACAAATTAGTGGCTAATT+TGG | 0.131032 | 4_4:-76919407 | Msa0704440:CDS |
| GACCATAACCATTTGTAATT+TGG | 0.144880 | 4_4:+76919081 | None:intergenic |
| TTCAGATACATGTCAGAAAA+TGG | 0.172150 | 4_4:-76918450 | Msa0704440:CDS |
| TTGACTGACACCATTCTAAA+AGG | 0.276822 | 4_4:-76919110 | Msa0704440:CDS |
| GCTCTTATTCGAACCTTGTT+TGG | 0.284470 | 4_4:+76919334 | None:intergenic |
| AAGCTGTGAACCTTGGAAAT+TGG | 0.296076 | 4_4:-76920352 | Msa0704440:CDS |
| CTTAATTACCCTCATGATCT+TGG | 0.300109 | 4_4:+76919046 | None:intergenic |
| AAGTATCTCTGCGCAGAAAA+TGG | 0.313062 | 4_4:-76920086 | Msa0704440:CDS |
| TACATTTGGATGGGCATATT+GGG | 0.314418 | 4_4:-76916752 | Msa0704440:CDS |
| ATGGAACCTTCTCTCTTTGA+TGG | 0.321798 | 4_4:-76920311 | Msa0704440:CDS |
| CTACATTTGGATGGGCATAT+TGG | 0.324675 | 4_4:-76916753 | Msa0704440:CDS |
| TGAGCCTCAAGGAGTTGATT+TGG | 0.327335 | 4_4:-76917427 | Msa0704440:CDS |
| TAATGTAATTGCAGTAAGTA+TGG | 0.328002 | 4_4:-76918212 | Msa0704440:intron |
| TCAAATGTTTCCTTGTTTCC+AGG | 0.331392 | 4_4:+76919379 | None:intergenic |
| GCTGCACCAGCTTCACAAAA+TGG | 0.342497 | 4_4:-76918164 | Msa0704440:CDS |
| ATGATCTTGGAAGCTTTGTC+TGG | 0.347957 | 4_4:+76919059 | None:intergenic |
| CTTGTACCTTCATAAATTGT+TGG | 0.360711 | 4_4:+76916794 | None:intergenic |
| GTGGGATTGGAAGATGAAAA+TGG | 0.361512 | 4_4:-76919433 | Msa0704440:CDS |
| AGATCTCTGACCACATCTAA+TGG | 0.388185 | 4_4:-76917165 | Msa0704440:CDS |
| GTATACTCTCGAGCTACATT+TGG | 0.394176 | 4_4:-76916766 | Msa0704440:CDS |
| CCCAATGGAAAGCTTTGGTT+CGG | 0.394185 | 4_4:+76920039 | None:intergenic |
| CAGGGGAATGGAGCGGTGAC+TGG | 0.399248 | 4_4:-76916846 | Msa0704440:CDS |
| GAGCCTCAAGGAGTTGATTT+GGG | 0.402075 | 4_4:-76917426 | Msa0704440:CDS |
| TAATAAGCAATTTGTGGGAT+TGG | 0.405438 | 4_4:-76919446 | Msa0704440:CDS |
| TTGTACCTTCATAAATTGTT+GGG | 0.410836 | 4_4:+76916795 | None:intergenic |
| ACCTGTAGAAACAGACCATT+TGG | 0.415494 | 4_4:+76919310 | None:intergenic |
| TACCAAATTACAAATGGTTA+TGG | 0.415761 | 4_4:-76919083 | Msa0704440:CDS |
| AATGGACCCCTCATCTTTGT+TGG | 0.417428 | 4_4:-76917147 | Msa0704440:intron |
| AGTTTCCCAATGGAAAGCTT+TGG | 0.427423 | 4_4:+76920034 | None:intergenic |
| CAAGGGATGGTTATCGAGAA+TGG | 0.431434 | 4_4:-76918124 | Msa0704440:CDS |
| ACAAATGGCTTTGGTGGTGT+TGG | 0.433057 | 4_4:+76918381 | None:intergenic |
| TTCAAGGATCCTCCAACAAA+TGG | 0.438681 | 4_4:+76918366 | None:intergenic |
| ACACCACCAAAGCCATTTGT+TGG | 0.439864 | 4_4:-76918378 | Msa0704440:CDS |
| CAAATGGCTTTGGTGGTGTT+GGG | 0.444244 | 4_4:+76918382 | None:intergenic |
| ACTCACTAGAGTCTCTGATA+TGG | 0.445502 | 4_4:+76919199 | None:intergenic |
| AAGGGATGGTTATCGAGAAT+GGG | 0.457232 | 4_4:-76918123 | Msa0704440:CDS |
| AGGGTCACTATCCTCCCAAC+TGG | 0.457954 | 4_4:+76919154 | None:intergenic |
| TTTCCATTGGGAAACTTTCA+GGG | 0.458328 | 4_4:-76920027 | Msa0704440:intron |
| GTGAATTAAACCTTTGAGCT+AGG | 0.459213 | 4_4:+76918060 | None:intergenic |
| GATCCTCCAACAAATGGCTT+TGG | 0.463311 | 4_4:+76918372 | None:intergenic |
| TCAGATACATGTCAGAAAAT+GGG | 0.464228 | 4_4:-76918449 | Msa0704440:CDS |
| CCTCCAACAAATGGCTTTGG+TGG | 0.466401 | 4_4:+76918375 | None:intergenic |
| TATTGGGGATGCAGGATCAC+TGG | 0.469409 | 4_4:-76918497 | Msa0704440:intron |
| AGAGATAGAAAATGAACAAA+AGG | 0.470252 | 4_4:+76920429 | None:intergenic |
| TGTGATAATGTCTAACCCTC+TGG | 0.470292 | 4_4:-76917340 | Msa0704440:CDS |
| CAACTCAAAGCTGTGAACCT+TGG | 0.471493 | 4_4:-76920359 | Msa0704440:CDS |
| ACAAATGTGACTCTAACAAC+TGG | 0.478443 | 4_4:-76916726 | Msa0704440:CDS |
| TCAGAATTCCCGTGGGGTGG+TGG | 0.478604 | 4_4:-76918416 | Msa0704440:CDS |
| ACCGAACCAAAGCTTTCCAT+TGG | 0.479263 | 4_4:-76920040 | Msa0704440:CDS |
| ATTGGTTGGTTACTGAAGGA+TGG | 0.479950 | 4_4:-76920334 | Msa0704440:CDS |
| ATGGAAAGCTTTGGTTCGGT+TGG | 0.486931 | 4_4:+76920043 | None:intergenic |
| TTCTTCTATTTCTGATACTG+TGG | 0.494299 | 4_4:-76918096 | Msa0704440:CDS |
| GTGTCTAATAAGCAATTTGT+GGG | 0.494697 | 4_4:-76919451 | Msa0704440:CDS |
| GATGGAATTTGGCAGGGGAA+TGG | 0.495782 | 4_4:-76916858 | Msa0704440:intron |
| GGAGAATACCAAATTACAAA+TGG | 0.503549 | 4_4:-76919089 | Msa0704440:CDS |
| TAGATGTGGTCAGAGATCTA+AGG | 0.505597 | 4_4:+76917169 | None:intergenic |
| CTAACAACTGGAGTCTTAAG+TGG | 0.511323 | 4_4:-76916714 | Msa0704440:CDS |
| CCGAACCAAAGCTTTCCATT+GGG | 0.514474 | 4_4:-76920039 | Msa0704440:CDS |
| ACCAAATGGTCTGTTTCTAC+AGG | 0.515158 | 4_4:-76919311 | Msa0704440:intron |
| TTGCAGTAAGTATGGAATGA+AGG | 0.515509 | 4_4:-76918204 | Msa0704440:intron |
| AAATGGAGAAAACAAATTAG+TGG | 0.517715 | 4_4:-76919416 | Msa0704440:CDS |
| AAGCAGGTTATGATGCTGTA+AGG | 0.518309 | 4_4:-76917383 | Msa0704440:CDS |
| CACTTGACAATGCCTTCACA+TGG | 0.521824 | 4_4:-76918341 | Msa0704440:CDS |
| GACTCTAGTGAGTACAGAAA+CGG | 0.525597 | 4_4:-76919189 | Msa0704440:CDS |
| CAGTAACCAACCAATTTCCA+AGG | 0.529368 | 4_4:+76920342 | None:intergenic |
| GTGAAGCTGGTGCAGCATGC+AGG | 0.530727 | 4_4:+76918171 | None:intergenic |
| AGATTCCCAACAATTTATGA+AGG | 0.534115 | 4_4:-76916800 | Msa0704440:CDS |
| GTGGCTAATTTGGATTCACC+TGG | 0.534148 | 4_4:-76919397 | Msa0704440:CDS |
| CCACCAAAGCCATTTGTTGG+AGG | 0.539349 | 4_4:-76918375 | Msa0704440:CDS |
| TTTGGATTCACCTGGAAACA+AGG | 0.546873 | 4_4:-76919389 | Msa0704440:CDS |
| GTATGGAATGAAGGTAATTG+TGG | 0.549760 | 4_4:-76918195 | Msa0704440:CDS |
| CTATAGACTTCCTAGCTCAA+AGG | 0.550341 | 4_4:-76918070 | Msa0704440:intron |
| CTATCAAAAGCTCTAACAAA+CGG | 0.553618 | 4_4:+76917294 | None:intergenic |
| ACTCTCGAGCTACATTTGGA+TGG | 0.555900 | 4_4:-76916762 | Msa0704440:CDS |
| TTTATTCCATCAAAGAGAGA+AGG | 0.556288 | 4_4:+76920305 | None:intergenic |
| AGTGTCTAATAAGCAATTTG+TGG | 0.557110 | 4_4:-76919452 | Msa0704440:CDS |
| GGTTTATGAAGAATCCAGTT+GGG | 0.558970 | 4_4:-76919168 | Msa0704440:CDS |
| CTCTCGAGCTACATTTGGAT+GGG | 0.559815 | 4_4:-76916761 | Msa0704440:CDS |
| CGTGGGGTGGTGGATAGCTA+AGG | 0.561788 | 4_4:-76918406 | Msa0704440:CDS |
| GGAATGGAGCGGTGACTGGA+AGG | 0.564154 | 4_4:-76916842 | Msa0704440:CDS |
| ACAATTTATGAAGGTACAAG+TGG | 0.567898 | 4_4:-76916791 | Msa0704440:CDS |
| TTAGCTATCCACCACCCCAC+GGG | 0.571193 | 4_4:+76918408 | None:intergenic |
| GGAAATTGGTTGGTTACTGA+AGG | 0.581283 | 4_4:-76920338 | Msa0704440:CDS |
| AGGCTTACCAACAAAGATGA+GGG | 0.583744 | 4_4:+76917140 | None:intergenic |
| GCTCATAGTGCAACAAGGGA+TGG | 0.586890 | 4_4:-76918137 | Msa0704440:CDS |
| CTCTGCGCAGAAAATGGTGG+AGG | 0.588597 | 4_4:-76920080 | Msa0704440:CDS |
| GTTGGTTACTGAAGGATGGA+TGG | 0.590842 | 4_4:-76920330 | Msa0704440:CDS |
| CGGTTTATGAAGAATCCAGT+TGG | 0.595000 | 4_4:-76919169 | Msa0704440:CDS |
| CCTTAACTGTGCCCATGTGA+AGG | 0.595136 | 4_4:+76918329 | None:intergenic |
| GTTCGAATAAGAGCACCAAA+TGG | 0.596929 | 4_4:-76919325 | Msa0704440:CDS |
| CTTAGCTATCCACCACCCCA+CGG | 0.600853 | 4_4:+76918407 | None:intergenic |
| TGTGAACCTTGGAAATTGGT+TGG | 0.604612 | 4_4:-76920348 | Msa0704440:CDS |
| CAGTCAGAATTCCCGTGGGG+TGG | 0.607298 | 4_4:-76918419 | Msa0704440:CDS |
| ACAAAGCTTCCAAGATCATG+AGG | 0.610942 | 4_4:-76919055 | Msa0704440:CDS |
| AAATGCAGTCAGAATTCCCG+TGG | 0.611238 | 4_4:-76918424 | Msa0704440:CDS |
| TGACCCTGAAAGTTTCCCAA+TGG | 0.616521 | 4_4:+76920024 | None:intergenic |
| CAACTCATGAATGAGCCTCA+AGG | 0.620097 | 4_4:-76917438 | Msa0704440:CDS |
| AAGGCTTACCAACAAAGATG+AGG | 0.625272 | 4_4:+76917139 | None:intergenic |
| GAAGAGCTCATAGTGCAACA+AGG | 0.630566 | 4_4:-76918142 | Msa0704440:CDS |
| TATCTCTGCGCAGAAAATGG+TGG | 0.631797 | 4_4:-76920083 | Msa0704440:CDS |
| CTTCCCAAATCAACTCCTTG+AGG | 0.634054 | 4_4:+76917423 | None:intergenic |
| ATTTATGAAGGTACAAGTGG+AGG | 0.636870 | 4_4:-76916788 | Msa0704440:CDS |
| TTATGAAGAATCCAGTTGGG+AGG | 0.640651 | 4_4:-76919165 | Msa0704440:CDS |
| AGGGATGGTTATCGAGAATG+GGG | 0.654790 | 4_4:-76918122 | Msa0704440:CDS |
| GATGAGGGGTCCATTAGATG+TGG | 0.658343 | 4_4:+76917155 | None:intergenic |
| AAGAGCTCATAGTGCAACAA+GGG | 0.661744 | 4_4:-76918141 | Msa0704440:CDS |
| ACTTGACAATGCCTTCACAT+GGG | 0.666696 | 4_4:-76918340 | Msa0704440:CDS |
| AATGCAGTCAGAATTCCCGT+GGG | 0.669618 | 4_4:-76918423 | Msa0704440:CDS |
| AAATGATGATGATCCAAACA+AGG | 0.674155 | 4_4:-76919347 | Msa0704440:CDS |
| GGCTTACCAACAAAGATGAG+GGG | 0.677681 | 4_4:+76917141 | None:intergenic |
| CAAAGCTTCCAAGATCATGA+GGG | 0.680521 | 4_4:-76919054 | Msa0704440:intron |
| AATTTGGCAGGGGAATGGAG+CGG | 0.739241 | 4_4:-76916853 | Msa0704440:intron |
| ATGCAGTCAGAATTCCCGTG+GGG | 0.779982 | 4_4:-76918422 | Msa0704440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTAAAAAAA+TGG | + | chr4_4:76917171-76917190 | None:intergenic | 0.0% |
| !! | TTTCATTTATGAAATAATAA+TGG | + | chr4_4:76916958-76916977 | None:intergenic | 10.0% |
| !! | ATAAATGAAAATTATATTAC+TGG | - | chr4_4:76916968-76916987 | Msa0704440:intron | 10.0% |
| !!! | AATAAAAAACAATGATCTTT+TGG | - | chr4_4:76916851-76916870 | Msa0704440:intron | 15.0% |
| !!! | ATAATAATGGAATTGAAATA+TGG | + | chr4_4:76916945-76916964 | None:intergenic | 15.0% |
| !!! | TAAAATTATTTGGTAATTTC+AGG | - | chr4_4:76916992-76917011 | Msa0704440:intron | 15.0% |
| !! | AATATTATTAATAACGTTGT+TGG | + | chr4_4:76917145-76917164 | None:intergenic | 15.0% |
| !!! | ATGATTTTTTAAACATACTA+AGG | + | chr4_4:76917562-76917581 | None:intergenic | 15.0% |
| !! | ATCAAAATATAATTGAAATC+TGG | + | chr4_4:76918457-76918476 | None:intergenic | 15.0% |
| !! | ATTGAAAACTAAAAAATGAA+GGG | + | chr4_4:76919119-76919138 | None:intergenic | 15.0% |
| !! | AATTGAAAACTAAAAAATGA+AGG | + | chr4_4:76919120-76919139 | None:intergenic | 15.0% |
| !! | AACAAATTAAGAATCAAAAT+TGG | + | chr4_4:76919225-76919244 | None:intergenic | 15.0% |
| !!! | ATTTTGATTCTTAATTTGTT+TGG | - | chr4_4:76919225-76919244 | Msa0704440:intron | 15.0% |
| !! | GAAACTAATAATATTTCATT+AGG | - | chr4_4:76919617-76919636 | Msa0704440:intron | 15.0% |
| !!! | GAGTTGCAAATTAAATTTTT+TGG | + | chr4_4:76916766-76916785 | None:intergenic | 20.0% |
| !! | CATTGATAAAAGAACAAAAT+AGG | + | chr4_4:76916918-76916937 | None:intergenic | 20.0% |
| !!! | TATTACTGGCTAAAATTATT+TGG | - | chr4_4:76916982-76917001 | Msa0704440:intron | 20.0% |
| !!! | ATGATAGTCTTAAAATGATT+GGG | + | chr4_4:76917508-76917527 | None:intergenic | 20.0% |
| !!! | TATGATAGTCTTAAAATGAT+TGG | + | chr4_4:76917509-76917528 | None:intergenic | 20.0% |
| !!! | ATTTTTTAAACATACTAAGG+TGG | + | chr4_4:76917559-76917578 | None:intergenic | 20.0% |
| !! | AAACTTGTATACAAGTAATA+AGG | + | chr4_4:76917878-76917897 | None:intergenic | 20.0% |
| !!! | TTGTCGTTTATTAATTTATC+AGG | - | chr4_4:76917917-76917936 | Msa0704440:intron | 20.0% |
| !! | GGTAAATAAAATAGACTAAA+AGG | + | chr4_4:76918846-76918865 | None:intergenic | 20.0% |
| !! | AAGTGAACTTTAAATTTCTA+TGG | + | chr4_4:76918867-76918886 | None:intergenic | 20.0% |
| !! | TTACTATAAGTTAAAACCAT+TGG | + | chr4_4:76918896-76918915 | None:intergenic | 20.0% |
| !! | TTGAAAACTAAAAAATGAAG+GGG | + | chr4_4:76919118-76919137 | None:intergenic | 20.0% |
| !!! | TTTGGTTAAATTAGTCTTTT+AGG | - | chr4_4:76919243-76919262 | Msa0704440:intron | 20.0% |
| !! | TCTTATATTAGTAGATTGTT+TGG | - | chr4_4:76919293-76919312 | Msa0704440:intron | 20.0% |
| !! | TAATAATGTGTATGAAAAGA+AGG | + | chr4_4:76920022-76920041 | None:intergenic | 20.0% |
| ! | AGAGATAGAAAATGAACAAA+AGG | + | chr4_4:76916713-76916732 | None:intergenic | 25.0% |
| !! | ATTATTTGGTAATTTCAGGA+TGG | - | chr4_4:76916996-76917015 | Msa0704440:intron | 25.0% |
| !! | TGATAGTCTTAAAATGATTG+GGG | + | chr4_4:76917507-76917526 | None:intergenic | 25.0% |
| ! | AAATGGAGAAAACAAATTAG+TGG | - | chr4_4:76917723-76917742 | Msa0704440:intron | 25.0% |
| ! | AAACAAATTAGTGGCTAATT+TGG | - | chr4_4:76917732-76917751 | Msa0704440:intron | 25.0% |
| ! | TACCAAATTACAAATGGTTA+TGG | - | chr4_4:76918056-76918075 | Msa0704440:intron | 25.0% |
| !!! | CTTTTTCAAAAAAGACAACA+AGG | + | chr4_4:76918122-76918141 | None:intergenic | 25.0% |
| ! | TGATCTTGATAAAATTACGA+TGG | - | chr4_4:76918189-76918208 | Msa0704440:CDS | 25.0% |
| ! | TTATTGATAGAGCTATCTAT+TGG | - | chr4_4:76918625-76918644 | Msa0704440:intron | 25.0% |
| ! | TATTGATAGAGCTATCTATT+GGG | - | chr4_4:76918626-76918645 | Msa0704440:intron | 25.0% |
| !! | ATAGACTAAAAGGTATAGTA+GGG | + | chr4_4:76918836-76918855 | None:intergenic | 25.0% |
| !! | AATAGACTAAAAGGTATAGT+AGG | + | chr4_4:76918837-76918856 | None:intergenic | 25.0% |
| ! | TAATGTAATTGCAGTAAGTA+TGG | - | chr4_4:76918927-76918946 | Msa0704440:intron | 25.0% |
| !! | GTATGGTTGATGTTATAAAT+AGG | + | chr4_4:76919196-76919215 | None:intergenic | 25.0% |
| ! | ATCAAAATTGGAATCATGTA+TGG | + | chr4_4:76919213-76919232 | None:intergenic | 25.0% |
| !!! | CTGCTTGATAATACTTTTTA+AGG | + | chr4_4:76919742-76919761 | None:intergenic | 25.0% |
| !!! | CTTAAAAAGTATTATCAAGC+AGG | - | chr4_4:76919740-76919759 | Msa0704440:intron | 25.0% |
| !!! | GCATTACTACAACTTATTTT+CGG | - | chr4_4:76919883-76919902 | Msa0704440:intron | 25.0% |
| !!! | TTCTGAGACACAATTAAATT+TGG | + | chr4_4:76920161-76920180 | None:intergenic | 25.0% |
| !!! | AAATGTTTTGTGATGGAATT+TGG | - | chr4_4:76920270-76920289 | Msa0704440:intron | 25.0% |
| ! | TTGTACCTTCATAAATTGTT+GGG | + | chr4_4:76920347-76920366 | None:intergenic | 25.0% |
| TTTATTCCATCAAAGAGAGA+AGG | + | chr4_4:76916837-76916856 | None:intergenic | 30.0% | |
| ! | ATTGTGACACCAATCATTTT+AGG | - | chr4_4:76917209-76917228 | Msa0704440:CDS | 30.0% |
| ! | TTGTGACACCAATCATTTTA+GGG | - | chr4_4:76917210-76917229 | Msa0704440:CDS | 30.0% |
| TTGCATATTATCTGCATTCA+GGG | + | chr4_4:76917284-76917303 | None:intergenic | 30.0% | |
| TTTGCATATTATCTGCATTC+AGG | + | chr4_4:76917285-76917304 | None:intergenic | 30.0% | |
| ACTAACAAAGTCTACATTCA+GGG | - | chr4_4:76917405-76917424 | Msa0704440:CDS | 30.0% | |
| TTTGCAATTTATCTGCATTC+AGG | - | chr4_4:76917433-76917452 | Msa0704440:CDS | 30.0% | |
| TTGCAATTTATCTGCATTCA+GGG | - | chr4_4:76917434-76917453 | Msa0704440:CDS | 30.0% | |
| AGTGTCTAATAAGCAATTTG+TGG | - | chr4_4:76917687-76917706 | Msa0704440:intron | 30.0% | |
| GTGTCTAATAAGCAATTTGT+GGG | - | chr4_4:76917688-76917707 | Msa0704440:intron | 30.0% | |
| TAATAAGCAATTTGTGGGAT+TGG | - | chr4_4:76917693-76917712 | Msa0704440:intron | 30.0% | |
| ! | AAATGATGATGATCCAAACA+AGG | - | chr4_4:76917792-76917811 | Msa0704440:intron | 30.0% |
| !! | ATATGGTGCTTTTGTTTGTT+TGG | - | chr4_4:76917852-76917871 | Msa0704440:intron | 30.0% |
| !! | CAGTCATTTTGAAAACAGAA+GGG | + | chr4_4:76918007-76918026 | None:intergenic | 30.0% |
| !! | ACAGTCATTTTGAAAACAGA+AGG | + | chr4_4:76918008-76918027 | None:intergenic | 30.0% |
| !! | TTGGTATTCTCCTTTTAGAA+TGG | + | chr4_4:76918042-76918061 | None:intergenic | 30.0% |
| GGAGAATACCAAATTACAAA+TGG | - | chr4_4:76918050-76918069 | Msa0704440:intron | 30.0% | |
| GACCATAACCATTTGTAATT+TGG | + | chr4_4:76918061-76918080 | None:intergenic | 30.0% | |
| ! | ACACTTAAAATCTAGAATGC+TGG | + | chr4_4:76918153-76918172 | None:intergenic | 30.0% |
| ! | TGTTGTATTGATATTGAGAC+CGG | + | chr4_4:76918228-76918247 | None:intergenic | 30.0% |
| CAGTAACAATCAACCAAATT+GGG | + | chr4_4:76918280-76918299 | None:intergenic | 30.0% | |
| TCAGTAACAATCAACCAAAT+TGG | + | chr4_4:76918281-76918300 | None:intergenic | 30.0% | |
| TACACATTTATGCACACAAA+GGG | - | chr4_4:76918399-76918418 | Msa0704440:CDS | 30.0% | |
| GTTAACCATTGAATCAAGAT+CGG | - | chr4_4:76918426-76918445 | Msa0704440:CDS | 30.0% | |
| ATTATCCGATCTTGATTCAA+TGG | + | chr4_4:76918434-76918453 | None:intergenic | 30.0% | |
| !!! | TAAACTTTTGGCTTTGGATT+TGG | + | chr4_4:76918570-76918589 | None:intergenic | 30.0% |
| !!! | TTGATCTAAACTTTTGGCTT+TGG | + | chr4_4:76918576-76918595 | None:intergenic | 30.0% |
| !!! | GTTGAGTTGATCTAAACTTT+TGG | + | chr4_4:76918582-76918601 | None:intergenic | 30.0% |
| ATTGATAGAGCTATCTATTG+GGG | - | chr4_4:76918627-76918646 | Msa0704440:intron | 30.0% | |
| TTCAGATACATGTCAGAAAA+TGG | - | chr4_4:76918689-76918708 | Msa0704440:intron | 30.0% | |
| TCAGATACATGTCAGAAAAT+GGG | - | chr4_4:76918690-76918709 | Msa0704440:intron | 30.0% | |
| !! | TTCTTCTATTTCTGATACTG+TGG | - | chr4_4:76919043-76919062 | Msa0704440:intron | 30.0% |
| GTTGATGTTATAAATAGGAG+TGG | + | chr4_4:76919191-76919210 | None:intergenic | 30.0% | |
| CTACTAATATAAGATGCATG+AGG | + | chr4_4:76919287-76919306 | None:intergenic | 30.0% | |
| TGTTTCAGAACAAACATCAA+CGG | - | chr4_4:76919327-76919346 | Msa0704440:CDS | 30.0% | |
| !!! | TCGGTTTCGTAGTTTTTTTA+AGG | - | chr4_4:76919352-76919371 | Msa0704440:CDS | 30.0% |
| ! | CTATCAAAAGCTCTAACAAA+CGG | + | chr4_4:76919848-76919867 | None:intergenic | 30.0% |
| ATTATGTCAACAGAATTCTC+AGG | - | chr4_4:76920079-76920098 | Msa0704440:CDS | 30.0% | |
| ! | CCATCACAAAACATTTTGTT+AGG | + | chr4_4:76920266-76920285 | None:intergenic | 30.0% |
| ! | CCTAACAAAATGTTTTGTGA+TGG | - | chr4_4:76920263-76920282 | Msa0704440:intron | 30.0% |
| AGATTCCCAACAATTTATGA+AGG | - | chr4_4:76920339-76920358 | Msa0704440:CDS | 30.0% | |
| CTTGTACCTTCATAAATTGT+TGG | + | chr4_4:76920348-76920367 | None:intergenic | 30.0% | |
| ! | ACAATTTATGAAGGTACAAG+TGG | - | chr4_4:76920348-76920367 | Msa0704440:CDS | 30.0% |
| TTTCCATTGGGAAACTTTCA+GGG | - | chr4_4:76917112-76917131 | Msa0704440:intron | 35.0% | |
| ! | TGTGACACCAATCATTTTAG+GGG | - | chr4_4:76917211-76917230 | Msa0704440:CDS | 35.0% |
| GCTAATTCCCCTAAAATGAT+TGG | + | chr4_4:76917221-76917240 | None:intergenic | 35.0% | |
| ACTAACGAAGTCTACATTCA+GGG | - | chr4_4:76917341-76917360 | Msa0704440:CDS | 35.0% | |
| TCAGGGACTAAATTGACTAA+CGG | - | chr4_4:76917358-76917377 | Msa0704440:CDS | 35.0% | |
| GACTAACAAAGTCTACATTC+AGG | - | chr4_4:76917404-76917423 | Msa0704440:CDS | 35.0% | |
| ! | TGTCTGTTTTGTAACAGTTG+TGG | - | chr4_4:76917635-76917654 | Msa0704440:intron | 35.0% |
| ! | TGTTTTGTAACAGTTGTGGA+GGG | - | chr4_4:76917639-76917658 | Msa0704440:intron | 35.0% |
| ! | TCAAATGTTTCCTTGTTTCC+AGG | + | chr4_4:76917763-76917782 | None:intergenic | 35.0% |
| GGTTTATGAAGAATCCAGTT+GGG | - | chr4_4:76917971-76917990 | Msa0704440:intron | 35.0% | |
| TTGACTGACACCATTCTAAA+AGG | - | chr4_4:76918029-76918048 | Msa0704440:intron | 35.0% | |
| CTTAATTACCCTCATGATCT+TGG | + | chr4_4:76918096-76918115 | None:intergenic | 35.0% | |
| CTACACATTTATGCACACAA+AGG | - | chr4_4:76918398-76918417 | Msa0704440:CDS | 35.0% | |
| AAGTTCACTTTGTCTACCAA+TGG | - | chr4_4:76918877-76918896 | Msa0704440:intron | 35.0% | |
| TTGCAGTAAGTATGGAATGA+AGG | - | chr4_4:76918935-76918954 | Msa0704440:intron | 35.0% | |
| GTATGGAATGAAGGTAATTG+TGG | - | chr4_4:76918944-76918963 | Msa0704440:intron | 35.0% | |
| GTGAATTAAACCTTTGAGCT+AGG | + | chr4_4:76919082-76919101 | None:intergenic | 35.0% | |
| !! | TTTGTTCTGAAACACAGACA+TGG | + | chr4_4:76919321-76919340 | None:intergenic | 35.0% |
| GGACTCATATGATATGATCA+AGG | - | chr4_4:76920100-76920119 | Msa0704440:CDS | 35.0% | |
| !! | TTTTGTGATGGAATTTGGCA+GGG | - | chr4_4:76920275-76920294 | Msa0704440:intron | 35.0% |
| ! | ATTTATGAAGGTACAAGTGG+AGG | - | chr4_4:76920351-76920370 | Msa0704440:CDS | 35.0% |
| TACATTTGGATGGGCATATT+GGG | - | chr4_4:76920387-76920406 | Msa0704440:CDS | 35.0% | |
| ACAAATGTGACTCTAACAAC+TGG | - | chr4_4:76920413-76920432 | Msa0704440:CDS | 35.0% | |
| AAGCTGTGAACCTTGGAAAT+TGG | - | chr4_4:76916787-76916806 | Msa0704440:CDS | 40.0% | |
| TGTGAACCTTGGAAATTGGT+TGG | - | chr4_4:76916791-76916810 | Msa0704440:CDS | 40.0% | |
| CAGTAACCAACCAATTTCCA+AGG | + | chr4_4:76916800-76916819 | None:intergenic | 40.0% | |
| ! | GGAAATTGGTTGGTTACTGA+AGG | - | chr4_4:76916801-76916820 | Msa0704440:CDS | 40.0% |
| ! | ATTGGTTGGTTACTGAAGGA+TGG | - | chr4_4:76916805-76916824 | Msa0704440:CDS | 40.0% |
| ATGGAACCTTCTCTCTTTGA+TGG | - | chr4_4:76916828-76916847 | Msa0704440:CDS | 40.0% | |
| AAGTATCTCTGCGCAGAAAA+TGG | - | chr4_4:76917053-76917072 | Msa0704440:intron | 40.0% | |
| AGTTTCCCAATGGAAAGCTT+TGG | + | chr4_4:76917108-76917127 | None:intergenic | 40.0% | |
| CTTTCCATTGGGAAACTTTC+AGG | - | chr4_4:76917111-76917130 | Msa0704440:intron | 40.0% | |
| !! | TAGCCATTTTAGTCCCTGAA+TGG | - | chr4_4:76917237-76917256 | Msa0704440:CDS | 40.0% |
| !! | AGCCATTTTAGTCCCTGAAT+GGG | - | chr4_4:76917238-76917257 | Msa0704440:CDS | 40.0% |
| GACTAACGAAGTCTACATTC+AGG | - | chr4_4:76917340-76917359 | Msa0704440:CDS | 40.0% | |
| ! | AGTCACTTTAGTCCCTGAAT+GGG | + | chr4_4:76917480-76917499 | None:intergenic | 40.0% |
| ! | TAGTCACTTTAGTCCCTGAA+TGG | + | chr4_4:76917325-76917344 | None:intergenic | 40.0% |
| ! | CTGTTTTGTAACAGTTGTGG+AGG | - | chr4_4:76917638-76917657 | Msa0704440:intron | 40.0% |
| GTGGGATTGGAAGATGAAAA+TGG | - | chr4_4:76917706-76917725 | Msa0704440:intron | 40.0% | |
| TTTGGATTCACCTGGAAACA+AGG | - | chr4_4:76917750-76917769 | Msa0704440:intron | 40.0% | |
| GCTCTTATTCGAACCTTGTT+TGG | + | chr4_4:76917808-76917827 | None:intergenic | 40.0% | |
| !! | GTTCGAATAAGAGCACCAAA+TGG | - | chr4_4:76917814-76917833 | Msa0704440:intron | 40.0% |
| !! | ACCAAATGGTCTGTTTCTAC+AGG | - | chr4_4:76917828-76917847 | Msa0704440:intron | 40.0% |
| ACCTGTAGAAACAGACCATT+TGG | + | chr4_4:76917832-76917851 | None:intergenic | 40.0% | |
| !! | GGTCTGTTTCTACAGGTATA+TGG | - | chr4_4:76917835-76917854 | Msa0704440:intron | 40.0% |
| ACTCACTAGAGTCTCTGATA+TGG | + | chr4_4:76917943-76917962 | None:intergenic | 40.0% | |
| GACTCTAGTGAGTACAGAAA+CGG | - | chr4_4:76917950-76917969 | Msa0704440:intron | 40.0% | |
| CGGTTTATGAAGAATCCAGT+TGG | - | chr4_4:76917970-76917989 | Msa0704440:intron | 40.0% | |
| TTATGAAGAATCCAGTTGGG+AGG | - | chr4_4:76917974-76917993 | Msa0704440:intron | 40.0% | |
| ! | ATGATCTTGGAAGCTTTGTC+TGG | + | chr4_4:76918083-76918102 | None:intergenic | 40.0% |
| ACAAAGCTTCCAAGATCATG+AGG | - | chr4_4:76918084-76918103 | Msa0704440:CDS | 40.0% | |
| CAAAGCTTCCAAGATCATGA+GGG | - | chr4_4:76918085-76918104 | Msa0704440:CDS | 40.0% | |
| TATTGAGACCGGTAGAATCA+CGG | + | chr4_4:76918217-76918236 | None:intergenic | 40.0% | |
| CATTAGATGAGAGCGAGAAT+AGG | - | chr4_4:76918357-76918376 | Msa0704440:CDS | 40.0% | |
| TCCATGCATTCAAGGAGTTA+GGG | + | chr4_4:76918535-76918554 | None:intergenic | 40.0% | |
| ATCCATGCATTCAAGGAGTT+AGG | + | chr4_4:76918536-76918555 | None:intergenic | 40.0% | |
| TTCAAGGATCCTCCAACAAA+TGG | + | chr4_4:76918776-76918795 | None:intergenic | 40.0% | |
| ! | GGCATTGTCAAGTGTTTTCA+AGG | + | chr4_4:76918792-76918811 | None:intergenic | 40.0% |
| ACTTGACAATGCCTTCACAT+GGG | - | chr4_4:76918799-76918818 | Msa0704440:intron | 40.0% | |
| AAGAGCTCATAGTGCAACAA+GGG | - | chr4_4:76918998-76919017 | Msa0704440:intron | 40.0% | |
| AAGGGATGGTTATCGAGAAT+GGG | - | chr4_4:76919016-76919035 | Msa0704440:intron | 40.0% | |
| CTATAGACTTCCTAGCTCAA+AGG | - | chr4_4:76919069-76919088 | Msa0704440:CDS | 40.0% | |
| AGAACAAACATCAACGGTGT+CGG | - | chr4_4:76919333-76919352 | Msa0704440:CDS | 40.0% | |
| CTTAGCAGTTAGCATGTGTT+TGG | + | chr4_4:76919444-76919463 | None:intergenic | 40.0% | |
| AAGCAGGTTATGATGCTGTA+AGG | - | chr4_4:76919756-76919775 | Msa0704440:intron | 40.0% | |
| ! | TGTGATAATGTCTAACCCTC+TGG | - | chr4_4:76919799-76919818 | Msa0704440:intron | 40.0% |
| !! | CTTTTGAGTCTCTATCCAGA+GGG | + | chr4_4:76919817-76919836 | None:intergenic | 40.0% |
| !! | ACTTTTGAGTCTCTATCCAG+AGG | + | chr4_4:76919818-76919837 | None:intergenic | 40.0% |
| TAGATGTGGTCAGAGATCTA+AGG | + | chr4_4:76919973-76919992 | None:intergenic | 40.0% | |
| AGATCTCTGACCACATCTAA+TGG | - | chr4_4:76919974-76919993 | Msa0704440:intron | 40.0% | |
| AGGCTTACCAACAAAGATGA+GGG | + | chr4_4:76920002-76920021 | None:intergenic | 40.0% | |
| AAGGCTTACCAACAAAGATG+AGG | + | chr4_4:76920003-76920022 | None:intergenic | 40.0% | |
| !! | GTTTTGTGATGGAATTTGGC+AGG | - | chr4_4:76920274-76920293 | Msa0704440:intron | 40.0% |
| ! | TTTGTGATGGAATTTGGCAG+GGG | - | chr4_4:76920276-76920295 | Msa0704440:intron | 40.0% |
| GTATACTCTCGAGCTACATT+TGG | - | chr4_4:76920373-76920392 | Msa0704440:CDS | 40.0% | |
| CTACATTTGGATGGGCATAT+TGG | - | chr4_4:76920386-76920405 | Msa0704440:CDS | 40.0% | |
| CTAACAACTGGAGTCTTAAG+TGG | - | chr4_4:76920425-76920444 | Msa0704440:CDS | 40.0% | |
| CAACTCAAAGCTGTGAACCT+TGG | - | chr4_4:76916780-76916799 | Msa0704440:CDS | 45.0% | |
| GTTGGTTACTGAAGGATGGA+TGG | - | chr4_4:76916809-76916828 | Msa0704440:CDS | 45.0% | |
| TATCTCTGCGCAGAAAATGG+TGG | - | chr4_4:76917056-76917075 | Msa0704440:intron | 45.0% | |
| !! | ATGGAAAGCTTTGGTTCGGT+TGG | + | chr4_4:76917099-76917118 | None:intergenic | 45.0% |
| ACCGAACCAAAGCTTTCCAT+TGG | - | chr4_4:76917099-76917118 | Msa0704440:intron | 45.0% | |
| ! | CCCAATGGAAAGCTTTGGTT+CGG | + | chr4_4:76917103-76917122 | None:intergenic | 45.0% |
| CCGAACCAAAGCTTTCCATT+GGG | - | chr4_4:76917100-76917119 | Msa0704440:intron | 45.0% | |
| TGACCCTGAAAGTTTCCCAA+TGG | + | chr4_4:76917118-76917137 | None:intergenic | 45.0% | |
| !! | GCCATTTTAGTCCCTGAATG+GGG | - | chr4_4:76917239-76917258 | Msa0704440:CDS | 45.0% |
| TCCCCATTCAGGGACTAAAA+TGG | + | chr4_4:76917243-76917262 | None:intergenic | 45.0% | |
| TATGCAAAACAGTCCCTGCA+TGG | - | chr4_4:76917297-76917316 | Msa0704440:CDS | 45.0% | |
| TCCCTGCATGGTCAATTTCA+GGG | - | chr4_4:76917309-76917328 | Msa0704440:CDS | 45.0% | |
| TCCCTGAAATTGACCATGCA+GGG | + | chr4_4:76917313-76917332 | None:intergenic | 45.0% | |
| ACTAACGGAGTCTGCATTCA+GGG | - | chr4_4:76917373-76917392 | Msa0704440:CDS | 45.0% | |
| ! | GTCACTTTAGTCCCTGAATG+GGG | + | chr4_4:76917479-76917498 | None:intergenic | 45.0% |
| GTGGCTAATTTGGATTCACC+TGG | - | chr4_4:76917742-76917761 | Msa0704440:intron | 45.0% | |
| TCCCTAACTCCTTGAATGCA+TGG | - | chr4_4:76918531-76918550 | Msa0704440:intron | 45.0% | |
| GTGAGCAATCCATGCATTCA+AGG | + | chr4_4:76918543-76918562 | None:intergenic | 45.0% | |
| AAATGCAGTCAGAATTCCCG+TGG | - | chr4_4:76918715-76918734 | Msa0704440:intron | 45.0% | |
| AATGCAGTCAGAATTCCCGT+GGG | - | chr4_4:76918716-76918735 | Msa0704440:intron | 45.0% | |
| !! | CAAATGGCTTTGGTGGTGTT+GGG | + | chr4_4:76918760-76918779 | None:intergenic | 45.0% |
| !! | ACAAATGGCTTTGGTGGTGT+TGG | + | chr4_4:76918761-76918780 | None:intergenic | 45.0% |
| ACACCACCAAAGCCATTTGT+TGG | - | chr4_4:76918761-76918780 | Msa0704440:intron | 45.0% | |
| GATCCTCCAACAAATGGCTT+TGG | + | chr4_4:76918770-76918789 | None:intergenic | 45.0% | |
| CACTTGACAATGCCTTCACA+TGG | - | chr4_4:76918798-76918817 | Msa0704440:intron | 45.0% | |
| ! | GCTCTTCCATTTTGTGAAGC+TGG | + | chr4_4:76918984-76919003 | None:intergenic | 45.0% |
| GAAGAGCTCATAGTGCAACA+AGG | - | chr4_4:76918997-76919016 | Msa0704440:intron | 45.0% | |
| CAAGGGATGGTTATCGAGAA+TGG | - | chr4_4:76919015-76919034 | Msa0704440:intron | 45.0% | |
| AGGGATGGTTATCGAGAATG+GGG | - | chr4_4:76919017-76919036 | Msa0704440:intron | 45.0% | |
| ! | ACTTTGAAGGATCGGCTACA+TGG | + | chr4_4:76919394-76919413 | None:intergenic | 45.0% |
| CAACTCATGAATGAGCCTCA+AGG | - | chr4_4:76919701-76919720 | Msa0704440:intron | 45.0% | |
| ! | TGAGCCTCAAGGAGTTGATT+TGG | - | chr4_4:76919712-76919731 | Msa0704440:intron | 45.0% |
| ! | GAGCCTCAAGGAGTTGATTT+GGG | - | chr4_4:76919713-76919732 | Msa0704440:intron | 45.0% |
| CTTCCCAAATCAACTCCTTG+AGG | + | chr4_4:76919719-76919738 | None:intergenic | 45.0% | |
| AATGGACCCCTCATCTTTGT+TGG | - | chr4_4:76919992-76920011 | Msa0704440:intron | 45.0% | |
| GGCTTACCAACAAAGATGAG+GGG | + | chr4_4:76920001-76920020 | None:intergenic | 45.0% | |
| ACTCTCGAGCTACATTTGGA+TGG | - | chr4_4:76920377-76920396 | Msa0704440:CDS | 45.0% | |
| CTCTCGAGCTACATTTGGAT+GGG | - | chr4_4:76920378-76920397 | Msa0704440:CDS | 45.0% | |
| !! | AAAAAAAAAGAAAAAAAAAA+GGG | + | chr4_4:76919149-76919168 | None:intergenic | 5.0% |
| !! | AAAAAAAAAAGAAAAAAAAA+AGG | + | chr4_4:76919150-76919169 | None:intergenic | 5.0% |
| GACGAATCGTTCCCCATTCA+GGG | + | chr4_4:76917465-76917484 | None:intergenic | 50.0% | |
| TGACGAATCGTTCCCCATTC+AGG | + | chr4_4:76917464-76917483 | None:intergenic | 50.0% | |
| GTCCCTGCATGGTCAATTTC+AGG | - | chr4_4:76917308-76917327 | Msa0704440:CDS | 50.0% | |
| GTCCCTGAAATTGACCATGC+AGG | + | chr4_4:76917314-76917333 | None:intergenic | 50.0% | |
| GACTAACGGAGTCTGCATTC+AGG | - | chr4_4:76917372-76917391 | Msa0704440:CDS | 50.0% | |
| TGACGAATCGTTCCCCATTC+AGG | - | chr4_4:76917464-76917483 | Msa0704440:CDS | 50.0% | |
| GACGAATCGTTCCCCATTCA+GGG | - | chr4_4:76917465-76917484 | Msa0704440:CDS | 50.0% | |
| TATGTCCACGCGTCCCAATT+TGG | - | chr4_4:76918264-76918283 | Msa0704440:intron | 50.0% | |
| ATCAACCAAATTGGGACGCG+TGG | + | chr4_4:76918272-76918291 | None:intergenic | 50.0% | |
| GAGCTATCTATTGGGGATGC+AGG | - | chr4_4:76918634-76918653 | Msa0704440:intron | 50.0% | |
| TATTGGGGATGCAGGATCAC+TGG | - | chr4_4:76918642-76918661 | Msa0704440:intron | 50.0% | |
| ATGCAGTCAGAATTCCCGTG+GGG | - | chr4_4:76918717-76918736 | Msa0704440:intron | 50.0% | |
| !! | CCTCCAACAAATGGCTTTGG+TGG | + | chr4_4:76918767-76918786 | None:intergenic | 50.0% |
| ! | CCACCAAAGCCATTTGTTGG+AGG | - | chr4_4:76918764-76918783 | Msa0704440:intron | 50.0% |
| CCTTAACTGTGCCCATGTGA+AGG | + | chr4_4:76918813-76918832 | None:intergenic | 50.0% | |
| CCTTCACATGGGCACAGTTA+AGG | - | chr4_4:76918810-76918829 | Msa0704440:intron | 50.0% | |
| GCTGCACCAGCTTCACAAAA+TGG | - | chr4_4:76918975-76918994 | Msa0704440:intron | 50.0% | |
| GCTCATAGTGCAACAAGGGA+TGG | - | chr4_4:76919002-76919021 | Msa0704440:intron | 50.0% | |
| ! | CAGACGCGACTTTGAAGGAT+CGG | + | chr4_4:76919402-76919421 | None:intergenic | 50.0% |
| GATGAGGGGTCCATTAGATG+TGG | + | chr4_4:76919987-76920006 | None:intergenic | 50.0% | |
| GATGGAATTTGGCAGGGGAA+TGG | - | chr4_4:76920281-76920300 | Msa0704440:intron | 50.0% | |
| AATTTGGCAGGGGAATGGAG+CGG | - | chr4_4:76920286-76920305 | Msa0704440:intron | 50.0% | |
| CTCTGCGCAGAAAATGGTGG+AGG | - | chr4_4:76917059-76917078 | Msa0704440:intron | 55.0% | |
| AGGGTCACTATCCTCCCAAC+TGG | + | chr4_4:76917988-76918007 | None:intergenic | 55.0% | |
| CGATGGAGCCGTGATTCTAC+CGG | - | chr4_4:76918206-76918225 | Msa0704440:intron | 55.0% | |
| TTAGCTATCCACCACCCCAC+GGG | + | chr4_4:76918734-76918753 | None:intergenic | 55.0% | |
| CTTAGCTATCCACCACCCCA+CGG | + | chr4_4:76918735-76918754 | None:intergenic | 55.0% | |
| AGACGCAGACGCGACTTTGA+AGG | + | chr4_4:76919407-76919426 | None:intergenic | 55.0% | |
| CAGTCAGAATTCCCGTGGGG+TGG | - | chr4_4:76918720-76918739 | Msa0704440:intron | 60.0% | |
| TCAGAATTCCCGTGGGGTGG+TGG | - | chr4_4:76918723-76918742 | Msa0704440:intron | 60.0% | |
| !! | CGTGGGGTGGTGGATAGCTA+AGG | - | chr4_4:76918733-76918752 | Msa0704440:intron | 60.0% |
| GTGAAGCTGGTGCAGCATGC+AGG | + | chr4_4:76918971-76918990 | None:intergenic | 60.0% | |
| GGAATGGAGCGGTGACTGGA+AGG | - | chr4_4:76920297-76920316 | Msa0704440:CDS | 60.0% | |
| CAGGGGAATGGAGCGGTGAC+TGG | - | chr4_4:76920293-76920312 | Msa0704440:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 76916684 | 76920477 | 76916684 | ID=Msa0704440;Name=Msa0704440 |
| chr4_4 | mRNA | 76916684 | 76920477 | 76916684 | ID=Msa0704440-mRNA-1;Parent=Msa0704440;Name=Msa0704440-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.71|0.37|1|1|1|8|0|506 |
| chr4_4 | exon | 76920289 | 76920477 | 76920289 | ID=Msa0704440-mRNA-1:exon:24293;Parent=Msa0704440-mRNA-1 |
| chr4_4 | exon | 76920028 | 76920147 | 76920028 | ID=Msa0704440-mRNA-1:exon:24292;Parent=Msa0704440-mRNA-1 |
| chr4_4 | exon | 76919312 | 76919509 | 76919312 | ID=Msa0704440-mRNA-1:exon:24291;Parent=Msa0704440-mRNA-1 |
| chr4_4 | exon | 76919055 | 76919222 | 76919055 | ID=Msa0704440-mRNA-1:exon:24290;Parent=Msa0704440-mRNA-1 |
| chr4_4 | exon | 76918336 | 76918505 | 76918336 | ID=Msa0704440-mRNA-1:exon:24289;Parent=Msa0704440-mRNA-1 |
| chr4_4 | exon | 76918071 | 76918220 | 76918071 | ID=Msa0704440-mRNA-1:exon:24288;Parent=Msa0704440-mRNA-1 |
| chr4_4 | exon | 76917148 | 76917491 | 76917148 | ID=Msa0704440-mRNA-1:exon:24287;Parent=Msa0704440-mRNA-1 |
| chr4_4 | exon | 76916684 | 76916865 | 76916684 | ID=Msa0704440-mRNA-1:exon:24286;Parent=Msa0704440-mRNA-1 |
| chr4_4 | CDS | 76920289 | 76920477 | 76920289 | ID=Msa0704440-mRNA-1:cds;Parent=Msa0704440-mRNA-1 |
| chr4_4 | CDS | 76920028 | 76920147 | 76920028 | ID=Msa0704440-mRNA-1:cds;Parent=Msa0704440-mRNA-1 |
| chr4_4 | CDS | 76919312 | 76919509 | 76919312 | ID=Msa0704440-mRNA-1:cds;Parent=Msa0704440-mRNA-1 |
| chr4_4 | CDS | 76919055 | 76919222 | 76919055 | ID=Msa0704440-mRNA-1:cds;Parent=Msa0704440-mRNA-1 |
| chr4_4 | CDS | 76918336 | 76918505 | 76918336 | ID=Msa0704440-mRNA-1:cds;Parent=Msa0704440-mRNA-1 |
| chr4_4 | CDS | 76918071 | 76918220 | 76918071 | ID=Msa0704440-mRNA-1:cds;Parent=Msa0704440-mRNA-1 |
| chr4_4 | CDS | 76917148 | 76917491 | 76917148 | ID=Msa0704440-mRNA-1:cds;Parent=Msa0704440-mRNA-1 |
| chr4_4 | CDS | 76916684 | 76916865 | 76916684 | ID=Msa0704440-mRNA-1:cds;Parent=Msa0704440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
