Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0052380 | XP_003589080.2 | 96.274 | 671 | 15 | 1 | 2 | 662 | 60 | 730 | 0.0 | 1346 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0052380 | sp|P48981|BGAL_MALDO | 73.094 | 669 | 170 | 2 | 2 | 661 | 55 | 722 | 0.0 | 1054 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0052380 | G7ICD0 | 96.274 | 671 | 15 | 1 | 2 | 662 | 60 | 730 | 0.0 | 1346 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0018060 | Msa0052380 | 0.977564 | 4.937995e-144 | -8.615850e-47 |
| Msa0052380 | Msa0097390 | 0.989526 | 1.675390e-178 | -8.615850e-47 |
| Msa0052380 | Msa0221830 | 0.822000 | 2.993382e-53 | -8.615850e-47 |
| Msa0052380 | Msa0228250 | 0.818451 | 1.947132e-52 | -8.615850e-47 |
| Msa0052380 | Msa0242490 | 0.809026 | 2.319055e-50 | -8.615850e-47 |
| Msa0052380 | Msa0243600 | 0.815404 | 9.406907e-52 | -8.615850e-47 |
| Msa0052380 | Msa0255620 | 0.808980 | 2.371723e-50 | -8.615850e-47 |
| Msa0052380 | Msa0294720 | 0.810991 | 8.750005e-51 | -8.615850e-47 |
| Msa0052380 | Msa0333070 | 0.801559 | 8.504655e-49 | -8.615850e-47 |
| Msa0052380 | Msa0389880 | 0.823262 | 1.522991e-53 | -8.615850e-47 |
| Msa0052380 | Msa0485970 | 0.859187 | 4.920014e-63 | -8.615850e-47 |
| Msa0052380 | Msa0564950 | 0.860393 | 2.132061e-63 | -8.615850e-47 |
| Msa0052380 | Msa0580580 | 0.879244 | 1.459247e-69 | -8.615850e-47 |
| Msa0052380 | Msa0618050 | 0.878504 | 2.663147e-69 | -8.615850e-47 |
| Msa0052380 | Msa0704440 | 0.802288 | 6.024998e-49 | -8.615850e-47 |
| Msa0052380 | Msa0704510 | 0.816486 | 5.395677e-52 | -8.615850e-47 |
| Msa0052380 | Msa0704520 | 0.855841 | 4.811092e-62 | -8.615850e-47 |
| Msa0052380 | Msa0712590 | 0.800969 | 1.123226e-48 | -8.615850e-47 |
| Msa0052380 | Msa0726330 | 0.828671 | 7.897074e-55 | -8.615850e-47 |
| Msa0052380 | Msa0752940 | 0.808504 | 2.997749e-50 | -8.615850e-47 |
| Msa0052380 | Msa0761430 | 0.820786 | 5.704973e-53 | -8.615850e-47 |
| Msa0052380 | Msa0804360 | 0.827534 | 1.483583e-54 | -8.615850e-47 |
| Msa0052380 | Msa0842030 | 0.808703 | 2.719323e-50 | -8.615850e-47 |
| Msa0052380 | Msa1199260 | 0.820602 | 6.289369e-53 | -8.615850e-47 |
| Msa0052380 | Msa1199270 | 0.815940 | 7.146525e-52 | -8.615850e-47 |
| Msa0052380 | Msa1290460 | 0.859136 | 5.094687e-63 | -8.615850e-47 |
| Msa0052380 | Msa1418990 | 0.986726 | 9.206423e-168 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0052380 | MtrunA17_Chr1g0152571 | 96.274 | 671 | 15 | 1 | 2 | 662 | 60 | 730 | 0.0 | 1346 |
| Msa0052380 | MtrunA17_Chr2g0299161 | 79.851 | 670 | 126 | 1 | 2 | 662 | 57 | 726 | 0.0 | 1142 |
| Msa0052380 | MtrunA17_Chr8g0342001 | 68.256 | 671 | 201 | 3 | 2 | 661 | 54 | 723 | 0.0 | 1004 |
| Msa0052380 | MtrunA17_Chr2g0330291 | 69.747 | 671 | 191 | 3 | 2 | 661 | 57 | 726 | 0.0 | 989 |
| Msa0052380 | MtrunA17_Chr8g0372421 | 61.848 | 671 | 244 | 4 | 3 | 662 | 58 | 727 | 0.0 | 899 |
| Msa0052380 | MtrunA17_Chr3g0142001 | 62.593 | 671 | 240 | 3 | 2 | 662 | 57 | 726 | 0.0 | 895 |
| Msa0052380 | MtrunA17_Chr1g0155701 | 62.146 | 671 | 241 | 5 | 2 | 661 | 58 | 726 | 0.0 | 894 |
| Msa0052380 | MtrunA17_Chr5g0404841 | 62.146 | 671 | 241 | 5 | 3 | 662 | 56 | 724 | 0.0 | 885 |
| Msa0052380 | MtrunA17_Chr2g0326481 | 58.198 | 677 | 258 | 6 | 2 | 661 | 51 | 719 | 0.0 | 797 |
| Msa0052380 | MtrunA17_Chr4g0029301 | 56.130 | 677 | 268 | 7 | 2 | 658 | 55 | 722 | 0.0 | 760 |
| Msa0052380 | MtrunA17_Chr3g0130711 | 54.786 | 679 | 285 | 7 | 3 | 661 | 57 | 733 | 0.0 | 731 |
| Msa0052380 | MtrunA17_Chr8g0378221 | 50.285 | 702 | 298 | 9 | 2 | 658 | 79 | 774 | 0.0 | 695 |
| Msa0052380 | MtrunA17_Chr5g0408371 | 48.235 | 680 | 328 | 9 | 1 | 662 | 56 | 729 | 0.0 | 631 |
| Msa0052380 | MtrunA17_Chr5g0406921 | 47.717 | 679 | 328 | 11 | 1 | 658 | 56 | 728 | 0.0 | 627 |
| Msa0052380 | MtrunA17_Chr3g0124931 | 50.074 | 673 | 280 | 15 | 2 | 658 | 55 | 687 | 0.0 | 625 |
| Msa0052380 | MtrunA17_Chr3g0130721 | 49.630 | 675 | 290 | 12 | 2 | 658 | 56 | 698 | 0.0 | 621 |
| Msa0052380 | MtrunA17_Chr2g0301001 | 48.382 | 680 | 324 | 12 | 2 | 658 | 56 | 731 | 0.0 | 613 |
| Msa0052380 | MtrunA17_Chr4g0037031 | 46.498 | 671 | 320 | 10 | 3 | 659 | 66 | 711 | 0.0 | 606 |
| Msa0052380 | MtrunA17_Chr3g0077531 | 46.667 | 675 | 331 | 10 | 2 | 654 | 55 | 722 | 0.0 | 600 |
| Msa0052380 | MtrunA17_Chr3g0145581 | 45.089 | 672 | 323 | 13 | 4 | 659 | 66 | 707 | 0.0 | 586 |
| Msa0052380 | MtrunA17_Chr2g0326491 | 55.794 | 466 | 148 | 3 | 2 | 409 | 51 | 516 | 0.0 | 535 |
| Msa0052380 | MtrunA17_Chr2g0326451 | 50.240 | 416 | 178 | 7 | 267 | 661 | 23 | 430 | 7.99e-127 | 386 |
| Msa0052380 | MtrunA17_Chr2g0326441 | 70.042 | 237 | 71 | 0 | 2 | 238 | 51 | 287 | 5.22e-125 | 373 |
| Msa0052380 | MtrunA17_Chr4g0071281 | 54.110 | 292 | 84 | 2 | 362 | 653 | 2 | 243 | 1.71e-99 | 305 |
| Msa0052380 | MtrunA17_Chr2g0326521 | 46.479 | 213 | 84 | 5 | 453 | 661 | 7 | 193 | 3.90e-51 | 179 |
| Msa0052380 | MtrunA17_Chr8g0372581 | 53.191 | 141 | 45 | 2 | 94 | 233 | 9 | 129 | 2.32e-43 | 152 |
| Msa0052380 | MtrunA17_Chr5g0405781 | 46.243 | 173 | 69 | 2 | 121 | 293 | 48 | 196 | 5.24e-41 | 153 |
| Msa0052380 | MtrunA17_Chr4g0071291 | 75.676 | 74 | 17 | 1 | 28 | 100 | 44 | 117 | 4.96e-33 | 124 |
| Msa0052380 | MtrunA17_Chr2g0307981 | 31.321 | 265 | 146 | 7 | 390 | 650 | 59 | 291 | 9.84e-29 | 117 |
| Msa0052380 | MtrunA17_Chr2g0330191 | 31.715 | 309 | 174 | 9 | 2 | 281 | 83 | 383 | 6.59e-28 | 119 |
| Msa0052380 | MtrunA17_Chr4g0021711 | 73.333 | 45 | 11 | 1 | 94 | 138 | 47 | 90 | 1.07e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0052380 | AT4G26140.1 | 69.940 | 672 | 188 | 5 | 2 | 662 | 58 | 726 | 0.0 | 1018 |
| Msa0052380 | AT4G26140.7 | 67.575 | 697 | 187 | 6 | 2 | 662 | 58 | 751 | 0.0 | 1005 |
| Msa0052380 | AT3G13750.1 | 68.554 | 671 | 199 | 3 | 2 | 661 | 63 | 732 | 0.0 | 993 |
| Msa0052380 | AT5G56870.1 | 70.597 | 670 | 185 | 4 | 2 | 662 | 58 | 724 | 0.0 | 992 |
| Msa0052380 | AT3G52840.2 | 67.761 | 670 | 205 | 3 | 2 | 662 | 112 | 779 | 0.0 | 991 |
| Msa0052380 | AT3G52840.1 | 67.761 | 670 | 205 | 3 | 2 | 662 | 58 | 725 | 0.0 | 988 |
| Msa0052380 | AT4G26140.9 | 67.270 | 663 | 178 | 6 | 2 | 628 | 58 | 717 | 0.0 | 947 |
| Msa0052380 | AT4G36360.1 | 61.997 | 671 | 243 | 4 | 3 | 662 | 63 | 732 | 0.0 | 900 |
| Msa0052380 | AT4G36360.2 | 61.997 | 671 | 243 | 4 | 3 | 662 | 63 | 732 | 0.0 | 899 |
| Msa0052380 | AT1G45130.1 | 62.054 | 672 | 243 | 4 | 2 | 662 | 60 | 730 | 0.0 | 894 |
| Msa0052380 | AT4G26140.3 | 70.599 | 568 | 155 | 4 | 2 | 560 | 58 | 622 | 0.0 | 858 |
| Msa0052380 | AT4G26140.2 | 70.599 | 568 | 155 | 4 | 2 | 560 | 58 | 622 | 0.0 | 858 |
| Msa0052380 | AT4G26140.6 | 70.351 | 570 | 155 | 5 | 2 | 560 | 58 | 624 | 0.0 | 853 |
| Msa0052380 | AT1G45130.2 | 60.938 | 640 | 238 | 4 | 34 | 662 | 13 | 651 | 0.0 | 833 |
| Msa0052380 | AT2G28470.1 | 58.150 | 681 | 258 | 8 | 2 | 661 | 61 | 735 | 0.0 | 808 |
| Msa0052380 | AT2G28470.3 | 58.150 | 681 | 258 | 8 | 2 | 661 | 61 | 735 | 0.0 | 808 |
| Msa0052380 | AT2G28470.2 | 58.150 | 681 | 258 | 8 | 2 | 661 | 55 | 729 | 0.0 | 807 |
| Msa0052380 | AT2G28470.4 | 58.150 | 681 | 258 | 8 | 2 | 661 | 55 | 729 | 0.0 | 807 |
| Msa0052380 | AT2G28470.5 | 57.895 | 646 | 245 | 8 | 2 | 626 | 61 | 700 | 0.0 | 758 |
| Msa0052380 | AT4G26140.8 | 71.313 | 495 | 128 | 5 | 2 | 485 | 58 | 549 | 0.0 | 749 |
| Msa0052380 | AT5G63810.1 | 54.867 | 678 | 284 | 6 | 3 | 661 | 62 | 736 | 0.0 | 741 |
| Msa0052380 | AT4G26140.4 | 68.077 | 520 | 127 | 6 | 2 | 485 | 58 | 574 | 0.0 | 736 |
| Msa0052380 | AT4G26140.5 | 68.077 | 520 | 127 | 6 | 2 | 485 | 58 | 574 | 0.0 | 736 |
| Msa0052380 | AT2G32810.1 | 51.804 | 693 | 294 | 7 | 2 | 658 | 67 | 755 | 0.0 | 714 |
| Msa0052380 | AT2G32810.2 | 51.804 | 693 | 294 | 7 | 2 | 658 | 67 | 755 | 0.0 | 712 |
| Msa0052380 | AT5G20710.1 | 47.923 | 674 | 330 | 9 | 3 | 658 | 58 | 728 | 0.0 | 630 |
| Msa0052380 | AT5G63800.1 | 48.813 | 674 | 296 | 14 | 2 | 658 | 61 | 702 | 0.0 | 610 |
| Msa0052380 | AT1G77410.1 | 47.556 | 675 | 300 | 15 | 2 | 658 | 54 | 692 | 0.0 | 599 |
| Msa0052380 | AT1G77410.3 | 47.206 | 680 | 300 | 16 | 2 | 658 | 54 | 697 | 0.0 | 593 |
| Msa0052380 | AT1G31740.1 | 45.803 | 679 | 299 | 14 | 2 | 658 | 51 | 682 | 0.0 | 582 |
| Msa0052380 | AT2G16730.1 | 44.193 | 663 | 327 | 11 | 2 | 648 | 73 | 708 | 0.0 | 569 |
| Msa0052380 | AT4G38590.1 | 44.228 | 667 | 326 | 13 | 3 | 651 | 1 | 639 | 0.0 | 561 |
| Msa0052380 | AT4G38590.2 | 43.713 | 668 | 326 | 14 | 2 | 651 | 68 | 703 | 0.0 | 551 |
| Msa0052380 | AT4G35010.1 | 43.137 | 663 | 334 | 12 | 2 | 648 | 70 | 705 | 0.0 | 548 |
| Msa0052380 | AT1G77410.2 | 46.358 | 604 | 270 | 15 | 73 | 658 | 19 | 586 | 1.19e-172 | 509 |
| Msa0052380 | AT1G77410.4 | 46.358 | 604 | 270 | 15 | 73 | 658 | 19 | 586 | 1.19e-172 | 509 |
| Msa0052380 | AT5G20710.2 | 42.966 | 526 | 279 | 9 | 151 | 658 | 1 | 523 | 3.77e-142 | 428 |
| Msa0052380 | AT2G04060.1 | 34.783 | 368 | 156 | 11 | 238 | 595 | 23 | 316 | 6.31e-49 | 178 |
| Msa0052380 | AT1G72990.2 | 35.577 | 312 | 164 | 9 | 1 | 283 | 29 | 332 | 8.62e-40 | 155 |
| Msa0052380 | AT1G72990.3 | 35.048 | 311 | 165 | 9 | 2 | 283 | 37 | 339 | 1.99e-38 | 151 |
| Msa0052380 | AT1G72990.1 | 35.048 | 311 | 165 | 9 | 2 | 283 | 92 | 394 | 2.76e-38 | 151 |
| Msa0052380 | AT1G72990.4 | 35.048 | 311 | 165 | 9 | 2 | 283 | 92 | 394 | 2.76e-38 | 151 |
| Msa0052380 | AT2G04062.1 | 36.364 | 143 | 70 | 2 | 2 | 144 | 36 | 157 | 7.27e-22 | 93.2 |
Find 184 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCATATTAATTTGGTAATT+TGG | 0.113818 | 1_2:+6615211 | None:intergenic |
| TTATTCAAACCTATGTATTT+TGG | 0.134516 | 1_2:-6618998 | Msa0052380:CDS |
| AAGAGAAACAAATTTATTTA+TGG | 0.147269 | 1_2:+6614971 | None:intergenic |
| CCACAATTTGTCCTGCATTT+TGG | 0.151033 | 1_2:+6615467 | None:intergenic |
| TTTGTTAATGGTCAACTTTC+AGG | 0.158124 | 1_2:-6616394 | Msa0052380:intron |
| CCAATTCTCAGTCCACATTT+TGG | 0.160554 | 1_2:+6617782 | None:intergenic |
| TTTACAAAGCCAAACTATTT+TGG | 0.166100 | 1_2:-6615059 | Msa0052380:three_prime_UTR |
| AACATGACCTGCTGAATTTA+TGG | 0.167665 | 1_2:+6616426 | None:intergenic |
| AACAGACAATGAGCCATTTA+AGG | 0.176309 | 1_2:-6618603 | Msa0052380:intron |
| TTTACCTGAGACATAATTAT+TGG | 0.179827 | 1_2:+6618388 | None:intergenic |
| ACTAATTTCATGCAGGTTAA+TGG | 0.191236 | 1_2:-6616775 | Msa0052380:intron |
| AAATTTAAACCATATTAATT+TGG | 0.205822 | 1_2:+6615203 | None:intergenic |
| CTTTCACTAAATGTTAATTT+AGG | 0.219363 | 1_2:+6616257 | None:intergenic |
| CAAATTTATTTATGGCAAAA+TGG | 0.222033 | 1_2:+6614979 | None:intergenic |
| TTTCATCATGTTCACAATTT+TGG | 0.227558 | 1_2:+6618441 | None:intergenic |
| CTGGAAAGGCTTACACAAAA+TGG | 0.230100 | 1_2:-6618170 | Msa0052380:CDS |
| GTTTGTGCTGAATGGAATTA+TGG | 0.235478 | 1_2:-6618770 | Msa0052380:CDS |
| ATTGAAACTCCAACCTTAAA+TGG | 0.236195 | 1_2:+6618590 | None:intergenic |
| ACCAAATTACCAAATTAATA+TGG | 0.255729 | 1_2:-6615212 | Msa0052380:three_prime_UTR |
| TATCATGGAGGAACTAATTT+TGG | 0.268539 | 1_2:-6617411 | Msa0052380:CDS |
| AATATCTTCGTTACATTTCC+AGG | 0.270788 | 1_2:+6618957 | None:intergenic |
| CATTTCTGCATCCAATCTTT+TGG | 0.273132 | 1_2:+6615103 | None:intergenic |
| TTGAGCCTTCATACCATAAC+TGG | 0.288620 | 1_2:-6615816 | Msa0052380:CDS |
| TCTTGTTATTGCCGACCTTT+AGG | 0.289024 | 1_2:+6616228 | None:intergenic |
| CAATATTCACCAAAATAGTT+TGG | 0.300815 | 1_2:+6615050 | None:intergenic |
| TCTAGACCCTTCAATGTTAC+TGG | 0.308225 | 1_2:+6616005 | None:intergenic |
| CATAGCTTGTGGCAATAAAA+AGG | 0.308874 | 1_2:+6617373 | None:intergenic |
| TTCTATAGGTACACTGATTT+CGG | 0.310712 | 1_2:-6617657 | Msa0052380:intron |
| CTCCTTTGTTAACTACTATA+TGG | 0.312217 | 1_2:-6617565 | Msa0052380:intron |
| CACAAAATGGGCTGCTCAAA+TGG | 0.319547 | 1_2:-6618157 | Msa0052380:CDS |
| ATGGACATAGCTTCCATAAA+AGG | 0.323182 | 1_2:-6616756 | Msa0052380:CDS |
| GTTTGGCTCAAGTATGTTCC+AGG | 0.324279 | 1_2:-6618638 | Msa0052380:CDS |
| TGTGCAGAGGATTTCCTGTT+TGG | 0.333950 | 1_2:-6618655 | Msa0052380:intron |
| GCATGGGAAAGGGTGAAATA+TGG | 0.334337 | 1_2:-6615580 | Msa0052380:CDS |
| CTTTATGTTCACTTGCGTAT+TGG | 0.343254 | 1_2:-6618800 | Msa0052380:CDS |
| TAGTGTTGCTGTGGGTCTTC+CGG | 0.356885 | 1_2:-6616195 | Msa0052380:intron |
| GACTTCCAAATGAACCAAAA+TGG | 0.361446 | 1_2:-6617242 | Msa0052380:CDS |
| TCAAGTTTACACCAAAAGAT+TGG | 0.366104 | 1_2:-6615114 | Msa0052380:three_prime_UTR |
| CATCATAGCAAATGCACTTT+GGG | 0.376087 | 1_2:-6616659 | Msa0052380:CDS |
| TGCATACCATATTCATCAAT+AGG | 0.379546 | 1_2:+6617339 | None:intergenic |
| CTGGAAGTTCCTCCATTGAT+TGG | 0.382186 | 1_2:-6615797 | Msa0052380:CDS |
| GTTACAAGCTCTATAATTCA+TGG | 0.383874 | 1_2:+6615025 | None:intergenic |
| TTCTTTACAAAACTTTCATT+AGG | 0.386816 | 1_2:+6616469 | None:intergenic |
| TGATAGATTGAGAATGAGTA+TGG | 0.387003 | 1_2:-6618219 | Msa0052380:intron |
| GGACCTGTGGAATGGGAAAT+TGG | 0.390507 | 1_2:-6618198 | Msa0052380:CDS |
| GATGCTCCTATTGATGAATA+TGG | 0.390606 | 1_2:-6617345 | Msa0052380:intron |
| CCAAAGTGCATTTGCTATGA+TGG | 0.390990 | 1_2:+6616660 | None:intergenic |
| ACATGGAATGTTGGGGTGTT+AGG | 0.391351 | 1_2:-6616029 | Msa0052380:CDS |
| TCTGCGGCAACGGTTACATT+TGG | 0.396362 | 1_2:-6616963 | Msa0052380:CDS |
| CCAAAATGTGGACTGAGAAT+TGG | 0.399232 | 1_2:-6617782 | Msa0052380:CDS |
| TATATTTGATTGTAGTATCA+TGG | 0.404132 | 1_2:-6617426 | Msa0052380:intron |
| AATGGACATGAGCCTTCTCC+TGG | 0.408664 | 1_2:-6618975 | Msa0052380:CDS |
| CATGTAAAGTTGCTTGCAAA+TGG | 0.412650 | 1_2:-6614937 | Msa0052380:three_prime_UTR |
| GAGACTTGTCTTGGCAGAAA+TGG | 0.417613 | 1_2:-6615971 | Msa0052380:CDS |
| CCATCATAGCAAATGCACTT+TGG | 0.421070 | 1_2:-6616660 | Msa0052380:CDS |
| GGAACATACTTGAGCCAAAC+AGG | 0.423416 | 1_2:+6618641 | None:intergenic |
| GTCCCTACGTTTGTGCTGAA+TGG | 0.427816 | 1_2:-6618778 | Msa0052380:CDS |
| TCTTTACTTAGTGTTGCTGT+GGG | 0.428806 | 1_2:-6616203 | Msa0052380:CDS |
| GCAACGGTTACATTTGGAAA+TGG | 0.429102 | 1_2:-6616957 | Msa0052380:CDS |
| ACCAAAGCATTGGTCGTCAT+TGG | 0.431882 | 1_2:-6615550 | Msa0052380:CDS |
| GCCAATGACGACCAATGCTT+TGG | 0.432093 | 1_2:+6615549 | None:intergenic |
| TTCTTTACTTAGTGTTGCTG+TGG | 0.433115 | 1_2:-6616204 | Msa0052380:CDS |
| AGAGAGTTTGTTTCAAACTC+AGG | 0.436146 | 1_2:-6618416 | Msa0052380:CDS |
| TGACCCTACTGGAATTTCAT+TGG | 0.446479 | 1_2:-6615268 | Msa0052380:CDS |
| CTTGGTTGTGCTTGAAGAAT+GGG | 0.453865 | 1_2:-6615295 | Msa0052380:CDS |
| TTGGACACAAGGATCATCAT+TGG | 0.454214 | 1_2:-6615778 | Msa0052380:CDS |
| TTCGTTACATTTCCAGGAGA+AGG | 0.456508 | 1_2:+6618963 | None:intergenic |
| GTTGGATAGGTTGGACTAAA+GGG | 0.457143 | 1_2:-6615846 | Msa0052380:intron |
| TGGAAAGGCTTACACAAAAT+GGG | 0.465526 | 1_2:-6618169 | Msa0052380:CDS |
| GTGGAGAACCAACACAGAAA+TGG | 0.465677 | 1_2:-6615448 | Msa0052380:intron |
| TAGTGAAAGTGTTAACCTAA+AGG | 0.466295 | 1_2:-6616243 | Msa0052380:CDS |
| GGTAAACTTACAACGGGATC+AGG | 0.468492 | 1_2:+6618081 | None:intergenic |
| AAATCTTACCATTTCTGTGT+TGG | 0.468836 | 1_2:+6615440 | None:intergenic |
| TCAAATTAATACCAGAATGT+TGG | 0.472200 | 1_2:-6616065 | Msa0052380:intron |
| TGGTCCAATAATTATGTCTC+AGG | 0.477103 | 1_2:-6618392 | Msa0052380:intron |
| TTGGGTTTAAAGTTCTCGTT+GGG | 0.479071 | 1_2:+6617801 | None:intergenic |
| ACTTTGAAACATGGAATGTT+GGG | 0.479098 | 1_2:-6616037 | Msa0052380:CDS |
| TTATTTCAAAAGGCTAAAGA+TGG | 0.480940 | 1_2:-6619032 | Msa0052380:CDS |
| GTGGCCAGACTTATTTCAAA+AGG | 0.481426 | 1_2:-6619042 | Msa0052380:CDS |
| AAATTTGTTTCTCTTTACAT+TGG | 0.482332 | 1_2:-6614963 | Msa0052380:three_prime_UTR |
| TTTGTGCTGAATGGAATTAT+GGG | 0.485197 | 1_2:-6618769 | Msa0052380:intron |
| AATGGAGGAACTTCCAGTTA+TGG | 0.487302 | 1_2:+6615803 | None:intergenic |
| CACTTTGAAACATGGAATGT+TGG | 0.488183 | 1_2:-6616038 | Msa0052380:CDS |
| TCTTGGTTGTGCTTGAAGAA+TGG | 0.488347 | 1_2:-6615296 | Msa0052380:CDS |
| TCTGTTCTGAAAGCCATCCC+TGG | 0.489582 | 1_2:+6618620 | None:intergenic |
| GTCTAGATACTGGTGTACCT+TGG | 0.490231 | 1_2:-6618128 | Msa0052380:CDS |
| TCTAGATACTGGTGTACCTT+GGG | 0.490711 | 1_2:-6618127 | Msa0052380:CDS |
| CGACACAAAATCTGCGGCAA+CGG | 0.500314 | 1_2:-6616973 | Msa0052380:CDS |
| CCGTGGATACTACATTTGAT+TGG | 0.501200 | 1_2:-6616726 | Msa0052380:CDS |
| GAATGGGGAGGTGACCCTAC+TGG | 0.503961 | 1_2:-6615279 | Msa0052380:CDS |
| CCAAAATGCAGGACAAATTG+TGG | 0.507299 | 1_2:-6615467 | Msa0052380:CDS |
| ATGGCTGTAGGTCTAGATAC+TGG | 0.511595 | 1_2:-6618138 | Msa0052380:CDS |
| GCTGCCACTCGGCGCGTCAA+AGG | 0.512668 | 1_2:+6615628 | None:intergenic |
| GAATGGGAAATTGGTGCTCC+TGG | 0.513051 | 1_2:-6618189 | Msa0052380:CDS |
| TGTTGGATAGGTTGGACTAA+AGG | 0.513449 | 1_2:-6615847 | Msa0052380:intron |
| ATGTGGACTGAGAATTGGTC+TGG | 0.514008 | 1_2:-6617777 | Msa0052380:CDS |
| GCTCAAGTATGTTCCAGGGA+TGG | 0.514701 | 1_2:-6618633 | Msa0052380:CDS |
| GAGAGTTTGTTTCAAACTCA+GGG | 0.516652 | 1_2:-6618415 | Msa0052380:CDS |
| CTAGACCCTTCAATGTTACT+GGG | 0.516715 | 1_2:+6616006 | None:intergenic |
| CTTACCTTGTACCATGTCAA+AGG | 0.519467 | 1_2:+6615744 | None:intergenic |
| ATGTCCATTCCAAAATACAT+AGG | 0.521663 | 1_2:+6618989 | None:intergenic |
| CTACTCATATCTAGTGCCAC+TGG | 0.522187 | 1_2:+6615602 | None:intergenic |
| TGGATAGGTATCATATTCCT+CGG | 0.523367 | 1_2:-6615344 | Msa0052380:intron |
| AACTTCCAGTTATGGTATGA+AGG | 0.525743 | 1_2:+6615811 | None:intergenic |
| ATGAATGTAGGAACTGTGTA+TGG | 0.525837 | 1_2:-6616293 | Msa0052380:intron |
| TTACCATGTGCTATATATGC+AGG | 0.531919 | 1_2:+6615527 | None:intergenic |
| TCTTGCTTGCACATGTCCCA+AGG | 0.532274 | 1_2:+6618111 | None:intergenic |
| AGATATGAGTAGCATGGGAA+AGG | 0.533528 | 1_2:-6615591 | Msa0052380:CDS |
| TTGGCAGAAATGGTCTTACA+AGG | 0.535055 | 1_2:-6615961 | Msa0052380:intron |
| TTTGGGTTTAAAGTTCTCGT+TGG | 0.535843 | 1_2:+6617800 | None:intergenic |
| GTTAGGCCCAGTAACATTGA+AGG | 0.535870 | 1_2:-6616012 | Msa0052380:CDS |
| GCCACTGGATCGCTGCCACT+CGG | 0.538573 | 1_2:+6615617 | None:intergenic |
| AGGAACTGTGTATGGAGGAT+TGG | 0.540099 | 1_2:-6616285 | Msa0052380:CDS |
| TATGATGGAATCGTCGTCAC+TGG | 0.542393 | 1_2:+6616675 | None:intergenic |
| TGGATAAACGACCAAAGCAT+TGG | 0.545055 | 1_2:-6615560 | Msa0052380:CDS |
| TCGTCGTCACTGGAGTAGGC+AGG | 0.545444 | 1_2:+6616685 | None:intergenic |
| AGGGGACAAGAGACTTGTCT+TGG | 0.546148 | 1_2:-6615980 | Msa0052380:CDS |
| ACTCTTACCATAAATTCAGC+AGG | 0.547224 | 1_2:-6616433 | Msa0052380:CDS |
| TCATAGACCAACTGAAGACT+TGG | 0.549584 | 1_2:-6617622 | Msa0052380:CDS |
| ACATTGAAGGGTCTAGATGA+GGG | 0.549862 | 1_2:-6615999 | Msa0052380:CDS |
| TGAGTATGGACCTGTGGAAT+GGG | 0.552441 | 1_2:-6618205 | Msa0052380:CDS |
| GAGTCCAAGTGGGAACGTCT+TGG | 0.553534 | 1_2:-6615313 | Msa0052380:CDS |
| GGTATCATATTCCTCGGTCA+TGG | 0.554459 | 1_2:-6615338 | Msa0052380:CDS |
| GGAATCGTCGTCACTGGAGT+AGG | 0.554946 | 1_2:+6616681 | None:intergenic |
| TGATCCTTGTGTCCAATCAA+TGG | 0.555014 | 1_2:+6615785 | None:intergenic |
| GATATGAGTAGCATGGGAAA+GGG | 0.555262 | 1_2:-6615590 | Msa0052380:CDS |
| GCACCAATTTCCCATTCCAC+AGG | 0.555297 | 1_2:+6618195 | None:intergenic |
| ACAACCTTTGACATGGTACA+AGG | 0.556753 | 1_2:-6615748 | Msa0052380:intron |
| GGACTGAGAATTGGTCTGGC+TGG | 0.561829 | 1_2:-6617773 | Msa0052380:intron |
| TATGTTTCTTAATGCAGATG+TGG | 0.562088 | 1_2:-6619061 | None:intergenic |
| CCAATCAAATGTAGTATCCA+CGG | 0.564185 | 1_2:+6616726 | None:intergenic |
| GCACTAGATATGAGTAGCAT+GGG | 0.566286 | 1_2:-6615596 | Msa0052380:CDS |
| GGCACTAGATATGAGTAGCA+TGG | 0.566466 | 1_2:-6615597 | Msa0052380:CDS |
| GGAAATTGGTGCTCCTGGAA+AGG | 0.566691 | 1_2:-6618184 | Msa0052380:CDS |
| TGGGCTGCTCAAATGGCTGT+AGG | 0.566955 | 1_2:-6618150 | Msa0052380:CDS |
| CATAGGTTTGAATAACATCA+AGG | 0.569765 | 1_2:+6619006 | None:intergenic |
| ATGAGTATGGACCTGTGGAA+TGG | 0.571228 | 1_2:-6618206 | Msa0052380:CDS |
| TCCTCCATTGATTGGACACA+AGG | 0.572202 | 1_2:-6615789 | Msa0052380:CDS |
| TTTCAAAAGGCTAAAGATGG+AGG | 0.574864 | 1_2:-6619029 | Msa0052380:CDS |
| TTCCATTCAGCACAAACGTA+GGG | 0.575351 | 1_2:+6618776 | None:intergenic |
| GTCAAGCTAGCACAACAAGC+TGG | 0.575439 | 1_2:-6618824 | Msa0052380:CDS |
| GGATCCACAGAAATCAAAGC+TGG | 0.580873 | 1_2:+6617177 | None:intergenic |
| GCCGAGTGGCAGCGATCCAG+TGG | 0.582197 | 1_2:-6615618 | Msa0052380:CDS |
| GCTGAATTTATGGTAAGAGT+AGG | 0.582723 | 1_2:+6616436 | None:intergenic |
| TGAGCCAGCTTTGATTTCTG+TGG | 0.583476 | 1_2:-6617181 | Msa0052380:CDS |
| TCACCAATGAAATTCCAGTA+GGG | 0.584721 | 1_2:+6615265 | None:intergenic |
| AACATTGAAGGGTCTAGATG+AGG | 0.588983 | 1_2:-6616000 | Msa0052380:CDS |
| TTTGGCTCAAGTATGTTCCA+GGG | 0.591443 | 1_2:-6618637 | Msa0052380:CDS |
| TTCACCAATGAAATTCCAGT+AGG | 0.593759 | 1_2:+6615264 | None:intergenic |
| CAATCAAATGTAGTATCCAC+GGG | 0.596448 | 1_2:+6616727 | None:intergenic |
| TTGTAGATTGACACTTGCAA+TGG | 0.599307 | 1_2:-6617846 | Msa0052380:intron |
| GCAAATATGATCTACCACCT+TGG | 0.599730 | 1_2:-6616935 | Msa0052380:CDS |
| ACAACCAAGACGTTCCCACT+TGG | 0.601417 | 1_2:+6615309 | None:intergenic |
| GAAAGTGTTAACCTAAAGGT+CGG | 0.607496 | 1_2:-6616239 | Msa0052380:CDS |
| AAGGAATGCAGCACAGACAC+TGG | 0.612057 | 1_2:+6617004 | None:intergenic |
| AGAACTTTAAACCCAAAATG+TGG | 0.614315 | 1_2:-6617794 | Msa0052380:CDS |
| TTGGTCTGCACTTTGAAACA+TGG | 0.615627 | 1_2:-6616046 | Msa0052380:CDS |
| GGAAGAATGCTGACAGACCA+AGG | 0.618216 | 1_2:+6616918 | None:intergenic |
| CGGTCATGGTTGAGTCCAAG+TGG | 0.619900 | 1_2:-6615324 | Msa0052380:CDS |
| GCGATTCTTCAGATTATCTG+TGG | 0.622203 | 1_2:-6616618 | Msa0052380:CDS |
| GAGTATGCCAAGTCTTCAGT+TGG | 0.624897 | 1_2:+6617615 | None:intergenic |
| TATAGGTACACTGATTTCGG+TGG | 0.628326 | 1_2:-6617654 | Msa0052380:intron |
| TTAGGCCCAGTAACATTGAA+GGG | 0.630859 | 1_2:-6616011 | Msa0052380:CDS |
| AGCATCATAATCATAGCTTG+TGG | 0.636529 | 1_2:+6617362 | None:intergenic |
| TGTGATGAATGTAATTACGC+TGG | 0.639969 | 1_2:-6615503 | Msa0052380:CDS |
| TTGGTTGTGCTTGAAGAATG+GGG | 0.644178 | 1_2:-6615294 | Msa0052380:CDS |
| TACCATATAGTAGTTAACAA+AGG | 0.653367 | 1_2:+6617563 | None:intergenic |
| GCTAGATTCATACAAAATCG+TGG | 0.659974 | 1_2:-6617588 | Msa0052380:CDS |
| CCATAAAAGGATGACTCCCG+TGG | 0.660532 | 1_2:-6616743 | Msa0052380:CDS |
| TGGCCTGCATATATAGCACA+TGG | 0.662930 | 1_2:-6615530 | Msa0052380:CDS |
| CATTGAAGGGTCTAGATGAG+GGG | 0.664668 | 1_2:-6615998 | Msa0052380:CDS |
| ACAACCTTTGACGCGCCGAG+TGG | 0.672410 | 1_2:-6615632 | Msa0052380:CDS |
| AATGTAGGAACTGTGTATGG+AGG | 0.675173 | 1_2:-6616290 | Msa0052380:intron |
| ATTCCATTCAGCACAAACGT+AGG | 0.678066 | 1_2:+6618775 | None:intergenic |
| TGAGAATGAGTATGGACCTG+TGG | 0.679660 | 1_2:-6618211 | Msa0052380:CDS |
| CTTTGAAACATGGAATGTTG+GGG | 0.679854 | 1_2:-6616036 | Msa0052380:CDS |
| TCCTTGTGTCCAATCAATGG+AGG | 0.680608 | 1_2:+6615788 | None:intergenic |
| ATTTGATTGTAGTATCATGG+AGG | 0.681855 | 1_2:-6617423 | Msa0052380:intron |
| CTTGGACTCAACCATGACCG+AGG | 0.682721 | 1_2:+6615327 | None:intergenic |
| GGTCATGGTTGAGTCCAAGT+GGG | 0.689731 | 1_2:-6615323 | Msa0052380:CDS |
| AAACTACGACACAAAATCTG+CGG | 0.691374 | 1_2:-6616979 | Msa0052380:CDS |
| AGTTTGTTTCAAACTCAGGG+TGG | 0.697300 | 1_2:-6618412 | Msa0052380:CDS |
| GTTGTGCTTGAAGAATGGGG+AGG | 0.774502 | 1_2:-6615291 | Msa0052380:CDS |
| AGAATGCTGACAGACCAAGG+TGG | 0.820211 | 1_2:+6616921 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTATAAAGTTTTTGT+TGG | - | chr1_2:6615616-6615635 | Msa0052380:CDS | 10.0% |
| !!! | TCTTATTTATTTTTTTTTGA+GGG | + | chr1_2:6615670-6615689 | None:intergenic | 10.0% |
| !!! | TTCTTATTTATTTTTTTTTG+AGG | + | chr1_2:6615671-6615690 | None:intergenic | 10.0% |
| !!! | TATTTATAGCTTTAAATTAA+TGG | + | chr1_2:6616234-6616253 | None:intergenic | 10.0% |
| !! | AAATTTAAACCATATTAATT+TGG | + | chr1_2:6618757-6618776 | None:intergenic | 10.0% |
| !!! | TTTTAATTAATCCAAACTTT+TGG | - | chr1_2:6615452-6615471 | Msa0052380:CDS | 15.0% |
| !! | ATTTAATCTAATACTGAAAT+TGG | - | chr1_2:6615701-6615720 | Msa0052380:intron | 15.0% |
| !! | AAAGCTATAAATATTTCATT+TGG | - | chr1_2:6616241-6616260 | Msa0052380:CDS | 15.0% |
| !! | AAGCTATAAATATTTCATTT+GGG | - | chr1_2:6616242-6616261 | Msa0052380:CDS | 15.0% |
| !! | TTAACAAAAAAAATCAAACT+AGG | + | chr1_2:6616900-6616919 | None:intergenic | 15.0% |
| !!! | TTTTTTGTTAATGTAATCTT+AGG | - | chr1_2:6616909-6616928 | Msa0052380:CDS | 15.0% |
| !! | CTTAAAACACATTAAAAATT+TGG | - | chr1_2:6617401-6617420 | Msa0052380:CDS | 15.0% |
| !! | ATTAAGTTATATATGAATGT+AGG | - | chr1_2:6617652-6617671 | Msa0052380:CDS | 15.0% |
| !!! | TTTTTTTTAATCTTTTGGAT+AGG | - | chr1_2:6618598-6618617 | Msa0052380:intron | 15.0% |
| !! | AAGAGAAACAAATTTATTTA+TGG | + | chr1_2:6618989-6619008 | None:intergenic | 15.0% |
| !!! | TTATTCAAACCTATGTATTT+TGG | - | chr1_2:6614959-6614978 | Msa0052380:three_prime_UTR | 20.0% |
| !! | AAATAATTATTTATGTGCAG+AGG | - | chr1_2:6615289-6615308 | Msa0052380:CDS | 20.0% |
| !! | TAAATATTTCATTTGGGAAT+TGG | - | chr1_2:6616248-6616267 | Msa0052380:CDS | 20.0% |
| !! | AAATATTTCATTTGGGAATT+GGG | - | chr1_2:6616249-6616268 | Msa0052380:CDS | 20.0% |
| !!! | TTTTATCTTACCTATTCTAT+AGG | - | chr1_2:6616286-6616305 | Msa0052380:CDS | 20.0% |
| !! | TATATGGTATATGAATATGA+TGG | - | chr1_2:6616408-6616427 | Msa0052380:CDS | 20.0% |
| !! | TATATTTGATTGTAGTATCA+TGG | - | chr1_2:6616531-6616550 | Msa0052380:intron | 20.0% |
| !! | ATAAGGTTTAAATTGTTTCA+TGG | - | chr1_2:6616641-6616660 | Msa0052380:CDS | 20.0% |
| !!! | CTTTATGTAAATTTTTCAGA+TGG | + | chr1_2:6616743-6616762 | None:intergenic | 20.0% |
| !!! | CTTCAATAAAGTAACAATTT+TGG | + | chr1_2:6616877-6616896 | None:intergenic | 20.0% |
| !!! | AAATTTTACTAATTTCATGC+AGG | - | chr1_2:6617175-6617194 | Msa0052380:CDS | 20.0% |
| !!! | TTAATGTGTTTTAAGAAGTT+AGG | + | chr1_2:6617396-6617415 | None:intergenic | 20.0% |
| !! | TTCTTTACAAAACTTTCATT+AGG | + | chr1_2:6617491-6617510 | None:intergenic | 20.0% |
| !!! | AATGAAAGTTTTGTAAAGAA+TGG | - | chr1_2:6617491-6617510 | Msa0052380:intron | 20.0% |
| !! | TAAATTGGAATTTATCATGA+AGG | + | chr1_2:6617616-6617635 | None:intergenic | 20.0% |
| !! | CTTTCACTAAATGTTAATTT+AGG | + | chr1_2:6617703-6617722 | None:intergenic | 20.0% |
| !! | ACCAAATTACCAAATTAATA+TGG | - | chr1_2:6618745-6618764 | Msa0052380:intron | 20.0% |
| !!! | ACCATATTAATTTGGTAATT+TGG | + | chr1_2:6618749-6618768 | None:intergenic | 20.0% |
| !! | CAAATTTATTTATGGCAAAA+TGG | + | chr1_2:6618981-6619000 | None:intergenic | 20.0% |
| !!! | AAATTTGTTTCTCTTTACAT+TGG | - | chr1_2:6618994-6619013 | Msa0052380:CDS | 20.0% |
| ! | TTATTTCAAAAGGCTAAAGA+TGG | - | chr1_2:6614925-6614944 | Msa0052380:three_prime_UTR | 25.0% |
| !! | TTTCATCATGTTCACAATTT+TGG | + | chr1_2:6615519-6615538 | None:intergenic | 25.0% |
| ! | TTTACCTGAGACATAATTAT+TGG | + | chr1_2:6615572-6615591 | None:intergenic | 25.0% |
| ! | TACCATATAGTAGTTAACAA+AGG | + | chr1_2:6616397-6616416 | None:intergenic | 25.0% |
| ! | TTAACGCCTTTCAAAATATT+AGG | - | chr1_2:6616693-6616712 | Msa0052380:CDS | 25.0% |
| ! | ACTTCAAAAAACTTCTAACA+TGG | + | chr1_2:6617142-6617161 | None:intergenic | 25.0% |
| ! | ACTAATGTTTACACTGAAAA+TGG | + | chr1_2:6617468-6617487 | None:intergenic | 25.0% |
| !!! | GTTCTACATGTTTTTGTTAA+TGG | - | chr1_2:6617551-6617570 | Msa0052380:intron | 25.0% |
| !! | AAGGAATTTCTAAGAAGAAA+AGG | + | chr1_2:6617597-6617616 | None:intergenic | 25.0% |
| ! | TCAAATTAATACCAGAATGT+TGG | - | chr1_2:6617892-6617911 | Msa0052380:intron | 25.0% |
| !! | TGAGACAAATTTTATGTTGT+TGG | - | chr1_2:6618093-6618112 | Msa0052380:CDS | 25.0% |
| !! | CAAATTTTATGTTGTTGGAT+AGG | - | chr1_2:6618098-6618117 | Msa0052380:CDS | 25.0% |
| ! | TTAAAAAACAACCTTTGACA+TGG | - | chr1_2:6618202-6618221 | Msa0052380:CDS | 25.0% |
| ! | AGATTTATTGAAAATGCAGA+TGG | + | chr1_2:6618285-6618304 | None:intergenic | 25.0% |
| !! | TTTACAAAGCCAAACTATTT+TGG | - | chr1_2:6618898-6618917 | Msa0052380:intron | 25.0% |
| ! | CAATATTCACCAAAATAGTT+TGG | + | chr1_2:6618910-6618929 | None:intergenic | 25.0% |
| !!! | TTAGCCTTTTGAAATAAGTC+TGG | + | chr1_2:6614922-6614941 | None:intergenic | 30.0% |
| CATAGGTTTGAATAACATCA+AGG | + | chr1_2:6614954-6614973 | None:intergenic | 30.0% | |
| !! | CAAACCTATGTATTTTGGAA+TGG | - | chr1_2:6614964-6614983 | Msa0052380:three_prime_UTR | 30.0% |
| ATGTCCATTCCAAAATACAT+AGG | + | chr1_2:6614971-6614990 | None:intergenic | 30.0% | |
| AATATCTTCGTTACATTTCC+AGG | + | chr1_2:6615003-6615022 | None:intergenic | 30.0% | |
| TTTGTGCTGAATGGAATTAT+GGG | - | chr1_2:6615188-6615207 | Msa0052380:three_prime_UTR | 30.0% | |
| ATTGAAACTCCAACCTTAAA+TGG | + | chr1_2:6615370-6615389 | None:intergenic | 30.0% | |
| TATACATCATGCCAAAAGTT+TGG | + | chr1_2:6615466-6615485 | None:intergenic | 30.0% | |
| TGGCATGATGTATATATGTT+AGG | - | chr1_2:6615472-6615491 | Msa0052380:CDS | 30.0% | |
| TGATAGATTGAGAATGAGTA+TGG | - | chr1_2:6615738-6615757 | Msa0052380:intron | 30.0% | |
| GGTACAAATTTGAAGGATAA+AGG | - | chr1_2:6616019-6616038 | Msa0052380:CDS | 30.0% | |
| TGTCAATCTACAACATAGTT+CGG | + | chr1_2:6616104-6616123 | None:intergenic | 30.0% | |
| AGAACTTTAAACCCAAAATG+TGG | - | chr1_2:6616163-6616182 | Msa0052380:intron | 30.0% | |
| AATCAGTGTACCTATAGAAT+AGG | + | chr1_2:6616299-6616318 | None:intergenic | 30.0% | |
| !! | TTCTATAGGTACACTGATTT+CGG | - | chr1_2:6616300-6616319 | Msa0052380:intron | 30.0% |
| CTCCTTTGTTAACTACTATA+TGG | - | chr1_2:6616392-6616411 | Msa0052380:intron | 30.0% | |
| ATTTGATTGTAGTATCATGG+AGG | - | chr1_2:6616534-6616553 | Msa0052380:intron | 30.0% | |
| ! | TATCATGGAGGAACTAATTT+TGG | - | chr1_2:6616546-6616565 | Msa0052380:intron | 30.0% |
| TGCATACCATATTCATCAAT+AGG | + | chr1_2:6616621-6616640 | None:intergenic | 30.0% | |
| GATGAATATGGTATGCAATA+AGG | - | chr1_2:6616624-6616643 | Msa0052380:CDS | 30.0% | |
| !! | GGAAGTCCTAATATTTTGAA+AGG | + | chr1_2:6616702-6616721 | None:intergenic | 30.0% |
| GCTTGGAAATAAAAACCTTT+AGG | - | chr1_2:6616815-6616834 | Msa0052380:intron | 30.0% | |
| CTCAGTTCATGATAAGATTA+TGG | - | chr1_2:6616850-6616869 | Msa0052380:intron | 30.0% | |
| ! | AAAACTACAGTTTTGCAATC+AGG | + | chr1_2:6617063-6617082 | None:intergenic | 30.0% |
| ! | CAAAACTGTAGTTTTCAACA+CGG | - | chr1_2:6617068-6617087 | Msa0052380:intron | 30.0% |
| ACTAATTTCATGCAGGTTAA+TGG | - | chr1_2:6617182-6617201 | Msa0052380:CDS | 30.0% | |
| TTTGTTAATGGTCAACTTTC+AGG | - | chr1_2:6617563-6617582 | Msa0052380:intron | 30.0% | |
| !! | TAGTGAAAGTGTTAACCTAA+AGG | - | chr1_2:6617714-6617733 | Msa0052380:intron | 30.0% |
| TCGAACAAGATAATACTAAC+CGG | + | chr1_2:6617784-6617803 | None:intergenic | 30.0% | |
| !! | ACTTTGAAACATGGAATGTT+GGG | - | chr1_2:6617920-6617939 | Msa0052380:intron | 30.0% |
| ! | TTTTATGTTGTTGGATAGGT+TGG | - | chr1_2:6618102-6618121 | Msa0052380:CDS | 30.0% |
| ! | CTTTTACTAATCCAAAATGC+AGG | - | chr1_2:6618479-6618498 | Msa0052380:intron | 30.0% |
| AAATCTTACCATTTCTGTGT+TGG | + | chr1_2:6618520-6618539 | None:intergenic | 30.0% | |
| TGGTAAGATTTCATATAACG+AGG | - | chr1_2:6618529-6618548 | Msa0052380:intron | 30.0% | |
| TCAAGTTTACACCAAAAGAT+TGG | - | chr1_2:6618843-6618862 | Msa0052380:CDS | 30.0% | |
| GTTACAAGCTCTATAATTCA+TGG | + | chr1_2:6618935-6618954 | None:intergenic | 30.0% | |
| TTTCAAAAGGCTAAAGATGG+AGG | - | chr1_2:6614928-6614947 | Msa0052380:three_prime_UTR | 35.0% | |
| CTTTATGTTCACTTGCGTAT+TGG | - | chr1_2:6615157-6615176 | Msa0052380:three_prime_UTR | 35.0% | |
| GTTTGTGCTGAATGGAATTA+TGG | - | chr1_2:6615187-6615206 | Msa0052380:three_prime_UTR | 35.0% | |
| AACAGACAATGAGCCATTTA+AGG | - | chr1_2:6615354-6615373 | Msa0052380:intron | 35.0% | |
| ! | AGAGAGTTTGTTTCAAACTC+AGG | - | chr1_2:6615541-6615560 | Msa0052380:CDS | 35.0% |
| ! | GAGAGTTTGTTTCAAACTCA+GGG | - | chr1_2:6615542-6615561 | Msa0052380:CDS | 35.0% |
| TGGTCCAATAATTATGTCTC+AGG | - | chr1_2:6615565-6615584 | Msa0052380:CDS | 35.0% | |
| GCAACGCTTCTTATTGTAAT+TGG | + | chr1_2:6615644-6615663 | None:intergenic | 35.0% | |
| TGGAAAGGCTTACACAAAAT+GGG | - | chr1_2:6615788-6615807 | Msa0052380:CDS | 35.0% | |
| TGCTAAGGTAAACTTACAAC+GGG | + | chr1_2:6615885-6615904 | None:intergenic | 35.0% | |
| CTGCTAAGGTAAACTTACAA+CGG | + | chr1_2:6615886-6615905 | None:intergenic | 35.0% | |
| TGTGTTTAGTGTTAGAGAAG+AGG | - | chr1_2:6615998-6616017 | Msa0052380:CDS | 35.0% | |
| ! | GAGAAGAGGTACAAATTTGA+AGG | - | chr1_2:6616012-6616031 | Msa0052380:CDS | 35.0% |
| TTGTAGATTGACACTTGCAA+TGG | - | chr1_2:6616111-6616130 | Msa0052380:intron | 35.0% | |
| ! | TTGGGTTTAAAGTTCTCGTT+GGG | + | chr1_2:6616159-6616178 | None:intergenic | 35.0% |
| ! | TTTGGGTTTAAAGTTCTCGT+TGG | + | chr1_2:6616160-6616179 | None:intergenic | 35.0% |
| ! | CAATTCTCAGTCCACATTTT+GGG | + | chr1_2:6616177-6616196 | None:intergenic | 35.0% |
| GCTAGATTCATACAAAATCG+TGG | - | chr1_2:6616369-6616388 | Msa0052380:intron | 35.0% | |
| !! | GAACTTAGAAGTATTCACAC+AGG | + | chr1_2:6616454-6616473 | None:intergenic | 35.0% |
| !! | AATTTTGGTCGAACATCTAG+TGG | - | chr1_2:6616561-6616580 | Msa0052380:intron | 35.0% |
| ! | CATAGCTTGTGGCAATAAAA+AGG | + | chr1_2:6616587-6616606 | None:intergenic | 35.0% |
| AGCATCATAATCATAGCTTG+TGG | + | chr1_2:6616598-6616617 | None:intergenic | 35.0% | |
| GATGCTCCTATTGATGAATA+TGG | - | chr1_2:6616612-6616631 | Msa0052380:CDS | 35.0% | |
| GACTTCCAAATGAACCAAAA+TGG | - | chr1_2:6616715-6616734 | Msa0052380:CDS | 35.0% | |
| !! | TTTTTCAGATGGCTCCATTT+TGG | + | chr1_2:6616732-6616751 | None:intergenic | 35.0% |
| GAGTCATAGACTTTACCTAA+AGG | + | chr1_2:6616833-6616852 | None:intergenic | 35.0% | |
| !! | ATTTTGTGTCGTAGTTTGCA+AGG | + | chr1_2:6616975-6616994 | None:intergenic | 35.0% |
| AAACTACGACACAAAATCTG+CGG | - | chr1_2:6616978-6616997 | Msa0052380:CDS | 35.0% | |
| ATGGACATAGCTTCCATAAA+AGG | - | chr1_2:6617201-6617220 | Msa0052380:CDS | 35.0% | |
| CAATCAAATGTAGTATCCAC+GGG | + | chr1_2:6617233-6617252 | None:intergenic | 35.0% | |
| CCAATCAAATGTAGTATCCA+CGG | + | chr1_2:6617234-6617253 | None:intergenic | 35.0% | |
| CATCATAGCAAATGCACTTT+GGG | - | chr1_2:6617298-6617317 | Msa0052380:intron | 35.0% | |
| GCTGAATTTATGGTAAGAGT+AGG | + | chr1_2:6617524-6617543 | None:intergenic | 35.0% | |
| ACTCTTACCATAAATTCAGC+AGG | - | chr1_2:6617524-6617543 | Msa0052380:intron | 35.0% | |
| AACATGACCTGCTGAATTTA+TGG | + | chr1_2:6617534-6617553 | None:intergenic | 35.0% | |
| ATGAATGTAGGAACTGTGTA+TGG | - | chr1_2:6617664-6617683 | Msa0052380:intron | 35.0% | |
| !! | GAAAGTGTTAACCTAAAGGT+CGG | - | chr1_2:6617718-6617737 | Msa0052380:intron | 35.0% |
| ! | TTCTTTACTTAGTGTTGCTG+TGG | - | chr1_2:6617753-6617772 | Msa0052380:intron | 35.0% |
| ! | TCTTTACTTAGTGTTGCTGT+GGG | - | chr1_2:6617754-6617773 | Msa0052380:intron | 35.0% |
| !! | CACTTTGAAACATGGAATGT+TGG | - | chr1_2:6617919-6617938 | Msa0052380:intron | 35.0% |
| !! | CTTTGAAACATGGAATGTTG+GGG | - | chr1_2:6617921-6617940 | Msa0052380:intron | 35.0% |
| AACTTCCAGTTATGGTATGA+AGG | + | chr1_2:6618149-6618168 | None:intergenic | 35.0% | |
| GTCATATGTAACATTGGCAA+AGG | + | chr1_2:6618263-6618282 | None:intergenic | 35.0% | |
| CAGATGGTCATATGTAACAT+TGG | + | chr1_2:6618269-6618288 | None:intergenic | 35.0% | |
| TTACCATGTGCTATATATGC+AGG | + | chr1_2:6618433-6618452 | None:intergenic | 35.0% | |
| TGTGATGAATGTAATTACGC+TGG | - | chr1_2:6618454-6618473 | Msa0052380:CDS | 35.0% | |
| TGGATAGGTATCATATTCCT+CGG | - | chr1_2:6618613-6618632 | Msa0052380:CDS | 35.0% | |
| TCACCAATGAAATTCCAGTA+GGG | + | chr1_2:6618695-6618714 | None:intergenic | 35.0% | |
| TTCACCAATGAAATTCCAGT+AGG | + | chr1_2:6618696-6618715 | None:intergenic | 35.0% | |
| CTTGAACTACCAGAAAAAGA+TGG | + | chr1_2:6618828-6618847 | None:intergenic | 35.0% | |
| ! | CATTTCTGCATCCAATCTTT+TGG | + | chr1_2:6618857-6618876 | None:intergenic | 35.0% |
| CATGTAAAGTTGCTTGCAAA+TGG | - | chr1_2:6619020-6619039 | Msa0052380:CDS | 35.0% | |
| GTGGCCAGACTTATTTCAAA+AGG | - | chr1_2:6614915-6614934 | Msa0052380:three_prime_UTR | 40.0% | |
| TTCGTTACATTTCCAGGAGA+AGG | + | chr1_2:6614997-6615016 | None:intergenic | 40.0% | |
| TTCCATTCAGCACAAACGTA+GGG | + | chr1_2:6615184-6615203 | None:intergenic | 40.0% | |
| ATTCCATTCAGCACAAACGT+AGG | + | chr1_2:6615185-6615204 | None:intergenic | 40.0% | |
| ! | TTTGGCTCAAGTATGTTCCA+GGG | - | chr1_2:6615320-6615339 | Msa0052380:CDS | 40.0% |
| ! | GACAATGAGCCATTTAAGGT+TGG | - | chr1_2:6615358-6615377 | Msa0052380:intron | 40.0% |
| ! | AGTTTGTTTCAAACTCAGGG+TGG | - | chr1_2:6615545-6615564 | Msa0052380:CDS | 40.0% |
| ! | CATTTTGTGTAAGCCTTTCC+AGG | + | chr1_2:6615789-6615808 | None:intergenic | 40.0% |
| CTGGAAAGGCTTACACAAAA+TGG | - | chr1_2:6615787-6615806 | Msa0052380:CDS | 40.0% | |
| TCTAGATACTGGTGTACCTT+GGG | - | chr1_2:6615830-6615849 | Msa0052380:CDS | 40.0% | |
| ! | CCAATTCTCAGTCCACATTT+TGG | + | chr1_2:6616178-6616197 | None:intergenic | 40.0% |
| ! | CCAAAATGTGGACTGAGAAT+TGG | - | chr1_2:6616175-6616194 | Msa0052380:intron | 40.0% |
| !! | TATAGGTACACTGATTTCGG+TGG | - | chr1_2:6616303-6616322 | Msa0052380:intron | 40.0% |
| TCATAGACCAACTGAAGACT+TGG | - | chr1_2:6616335-6616354 | Msa0052380:intron | 40.0% | |
| !!! | TGGCTCCATTTTGGTTCATT+TGG | + | chr1_2:6616723-6616742 | None:intergenic | 40.0% |
| GCAACGGTTACATTTGGAAA+TGG | - | chr1_2:6617000-6617019 | Msa0052380:CDS | 40.0% | |
| GCAAATATGATCTACCACCT+TGG | - | chr1_2:6617022-6617041 | Msa0052380:CDS | 40.0% | |
| ! | TGTAGTTTTCAACACGGCAA+CGG | - | chr1_2:6617074-6617093 | Msa0052380:intron | 40.0% |
| CCGTGGATACTACATTTGAT+TGG | - | chr1_2:6617231-6617250 | Msa0052380:CDS | 40.0% | |
| !! | CCAAAGTGCATTTGCTATGA+TGG | + | chr1_2:6617300-6617319 | None:intergenic | 40.0% |
| CCATCATAGCAAATGCACTT+TGG | - | chr1_2:6617297-6617316 | Msa0052380:intron | 40.0% | |
| GCGATTCTTCAGATTATCTG+TGG | - | chr1_2:6617339-6617358 | Msa0052380:intron | 40.0% | |
| AATGTAGGAACTGTGTATGG+AGG | - | chr1_2:6617667-6617686 | Msa0052380:intron | 40.0% | |
| !! | TCTTGTTATTGCCGACCTTT+AGG | + | chr1_2:6617732-6617751 | None:intergenic | 40.0% |
| !! | TTGGTCTGCACTTTGAAACA+TGG | - | chr1_2:6617911-6617930 | Msa0052380:intron | 40.0% |
| TTAGGCCCAGTAACATTGAA+GGG | - | chr1_2:6617946-6617965 | Msa0052380:intron | 40.0% | |
| CTAGACCCTTCAATGTTACT+GGG | + | chr1_2:6617954-6617973 | None:intergenic | 40.0% | |
| TCTAGACCCTTCAATGTTAC+TGG | + | chr1_2:6617955-6617974 | None:intergenic | 40.0% | |
| AACATTGAAGGGTCTAGATG+AGG | - | chr1_2:6617957-6617976 | Msa0052380:intron | 40.0% | |
| ACATTGAAGGGTCTAGATGA+GGG | - | chr1_2:6617958-6617977 | Msa0052380:intron | 40.0% | |
| ! | TTGGCAGAAATGGTCTTACA+AGG | - | chr1_2:6617996-6618015 | Msa0052380:intron | 40.0% |
| ! | TGTTGGATAGGTTGGACTAA+AGG | - | chr1_2:6618110-6618129 | Msa0052380:CDS | 40.0% |
| ! | GTTGGATAGGTTGGACTAAA+GGG | - | chr1_2:6618111-6618130 | Msa0052380:CDS | 40.0% |
| TTGAGCCTTCATACCATAAC+TGG | - | chr1_2:6618141-6618160 | Msa0052380:CDS | 40.0% | |
| AATGGAGGAACTTCCAGTTA+TGG | + | chr1_2:6618157-6618176 | None:intergenic | 40.0% | |
| TGATCCTTGTGTCCAATCAA+TGG | + | chr1_2:6618175-6618194 | None:intergenic | 40.0% | |
| TTGGACACAAGGATCATCAT+TGG | - | chr1_2:6618179-6618198 | Msa0052380:CDS | 40.0% | |
| ACAACCTTTGACATGGTACA+AGG | - | chr1_2:6618209-6618228 | Msa0052380:CDS | 40.0% | |
| CTTACCTTGTACCATGTCAA+AGG | + | chr1_2:6618216-6618235 | None:intergenic | 40.0% | |
| GCACTAGATATGAGTAGCAT+GGG | - | chr1_2:6618361-6618380 | Msa0052380:intron | 40.0% | |
| AGATATGAGTAGCATGGGAA+AGG | - | chr1_2:6618366-6618385 | Msa0052380:intron | 40.0% | |
| GATATGAGTAGCATGGGAAA+GGG | - | chr1_2:6618367-6618386 | Msa0052380:intron | 40.0% | |
| TGGATAAACGACCAAAGCAT+TGG | - | chr1_2:6618397-6618416 | Msa0052380:CDS | 40.0% | |
| ! | CCACAATTTGTCCTGCATTT+TGG | + | chr1_2:6618493-6618512 | None:intergenic | 40.0% |
| CCAAAATGCAGGACAAATTG+TGG | - | chr1_2:6618490-6618509 | Msa0052380:intron | 40.0% | |
| TCTTGGTTGTGCTTGAAGAA+TGG | - | chr1_2:6618661-6618680 | Msa0052380:intron | 40.0% | |
| CTTGGTTGTGCTTGAAGAAT+GGG | - | chr1_2:6618662-6618681 | Msa0052380:intron | 40.0% | |
| TTGGTTGTGCTTGAAGAATG+GGG | - | chr1_2:6618663-6618682 | Msa0052380:intron | 40.0% | |
| TGACCCTACTGGAATTTCAT+TGG | - | chr1_2:6618689-6618708 | Msa0052380:intron | 40.0% | |
| ! | ATCGATGCTCCATCTTTTTC+TGG | - | chr1_2:6618816-6618835 | Msa0052380:CDS | 40.0% |
| TGTGCAGAGGATTTCCTGTT+TGG | - | chr1_2:6615302-6615321 | Msa0052380:CDS | 45.0% | |
| GGAACATACTTGAGCCAAAC+AGG | + | chr1_2:6615319-6615338 | None:intergenic | 45.0% | |
| ! | GTTTGGCTCAAGTATGTTCC+AGG | - | chr1_2:6615319-6615338 | Msa0052380:CDS | 45.0% |
| TGAGAATGAGTATGGACCTG+TGG | - | chr1_2:6615746-6615765 | Msa0052380:intron | 45.0% | |
| ATGAGTATGGACCTGTGGAA+TGG | - | chr1_2:6615751-6615770 | Msa0052380:CDS | 45.0% | |
| TGAGTATGGACCTGTGGAAT+GGG | - | chr1_2:6615752-6615771 | Msa0052380:CDS | 45.0% | |
| !! | CACAAAATGGGCTGCTCAAA+TGG | - | chr1_2:6615800-6615819 | Msa0052380:CDS | 45.0% |
| ATGGCTGTAGGTCTAGATAC+TGG | - | chr1_2:6615819-6615838 | Msa0052380:CDS | 45.0% | |
| GTCTAGATACTGGTGTACCT+TGG | - | chr1_2:6615829-6615848 | Msa0052380:CDS | 45.0% | |
| GGTAAACTTACAACGGGATC+AGG | + | chr1_2:6615879-6615898 | None:intergenic | 45.0% | |
| TGTGTCGTGTCAATCGTATC+AGG | - | chr1_2:6615924-6615943 | Msa0052380:intron | 45.0% | |
| ! | ATGTGGACTGAGAATTGGTC+TGG | - | chr1_2:6616180-6616199 | Msa0052380:intron | 45.0% |
| GAGTATGCCAAGTCTTCAGT+TGG | + | chr1_2:6616345-6616364 | None:intergenic | 45.0% | |
| ! | TGAGCCAGCTTTGATTTCTG+TGG | - | chr1_2:6616776-6616795 | Msa0052380:intron | 45.0% |
| GGATCCACAGAAATCAAAGC+TGG | + | chr1_2:6616783-6616802 | None:intergenic | 45.0% | |
| TTTCCAAGCCATGTGACTGT+AGG | + | chr1_2:6616804-6616823 | None:intergenic | 45.0% | |
| ! | TATGATGGAATCGTCGTCAC+TGG | + | chr1_2:6617285-6617304 | None:intergenic | 45.0% |
| AGGAACTGTGTATGGAGGAT+TGG | - | chr1_2:6617672-6617691 | Msa0052380:intron | 45.0% | |
| ! | TTGCTCTGGTCGCACATTTT+AGG | - | chr1_2:6617820-6617839 | Msa0052380:CDS | 45.0% |
| CAAAGTGCAGACCAACATTC+TGG | + | chr1_2:6617906-6617925 | None:intergenic | 45.0% | |
| ! | ACATGGAATGTTGGGGTGTT+AGG | - | chr1_2:6617928-6617947 | Msa0052380:intron | 45.0% |
| GTTAGGCCCAGTAACATTGA+AGG | - | chr1_2:6617945-6617964 | Msa0052380:intron | 45.0% | |
| CATTGAAGGGTCTAGATGAG+GGG | - | chr1_2:6617959-6617978 | Msa0052380:intron | 45.0% | |
| GAGACTTGTCTTGGCAGAAA+TGG | - | chr1_2:6617986-6618005 | Msa0052380:intron | 45.0% | |
| CTGGAAGTTCCTCCATTGAT+TGG | - | chr1_2:6618160-6618179 | Msa0052380:CDS | 45.0% | |
| ! | TCCTCCATTGATTGGACACA+AGG | - | chr1_2:6618168-6618187 | Msa0052380:CDS | 45.0% |
| TCCTTGTGTCCAATCAATGG+AGG | + | chr1_2:6618172-6618191 | None:intergenic | 45.0% | |
| CTACTCATATCTAGTGCCAC+TGG | + | chr1_2:6618358-6618377 | None:intergenic | 45.0% | |
| GGCACTAGATATGAGTAGCA+TGG | - | chr1_2:6618360-6618379 | Msa0052380:intron | 45.0% | |
| GCATGGGAAAGGGTGAAATA+TGG | - | chr1_2:6618377-6618396 | Msa0052380:intron | 45.0% | |
| !! | ACCAAAGCATTGGTCGTCAT+TGG | - | chr1_2:6618407-6618426 | Msa0052380:CDS | 45.0% |
| TGGCCTGCATATATAGCACA+TGG | - | chr1_2:6618427-6618446 | Msa0052380:CDS | 45.0% | |
| GTGGAGAACCAACACAGAAA+TGG | - | chr1_2:6618509-6618528 | Msa0052380:intron | 45.0% | |
| GGTATCATATTCCTCGGTCA+TGG | - | chr1_2:6618619-6618638 | Msa0052380:CDS | 45.0% | |
| !!! | TTAATTTAGAATATATAAAT+TGG | + | chr1_2:6617631-6617650 | None:intergenic | 5.0% |
| !!! | TAATTTTTTTTTTAATCTTT+TGG | - | chr1_2:6618593-6618612 | Msa0052380:intron | 5.0% |
| AATGGACATGAGCCTTCTCC+TGG | - | chr1_2:6614982-6615001 | Msa0052380:three_prime_UTR | 50.0% | |
| GTCAAGCTAGCACAACAAGC+TGG | - | chr1_2:6615133-6615152 | Msa0052380:three_prime_UTR | 50.0% | |
| GTCCCTACGTTTGTGCTGAA+TGG | - | chr1_2:6615179-6615198 | Msa0052380:three_prime_UTR | 50.0% | |
| GCTCAAGTATGTTCCAGGGA+TGG | - | chr1_2:6615324-6615343 | Msa0052380:CDS | 50.0% | |
| !! | TCTGTTCTGAAAGCCATCCC+TGG | + | chr1_2:6615340-6615359 | None:intergenic | 50.0% |
| GGACCTGTGGAATGGGAAAT+TGG | - | chr1_2:6615759-6615778 | Msa0052380:CDS | 50.0% | |
| GCACCAATTTCCCATTCCAC+AGG | + | chr1_2:6615765-6615784 | None:intergenic | 50.0% | |
| ! | GAATGGGAAATTGGTGCTCC+TGG | - | chr1_2:6615768-6615787 | Msa0052380:CDS | 50.0% |
| ! | GGAAATTGGTGCTCCTGGAA+AGG | - | chr1_2:6615773-6615792 | Msa0052380:CDS | 50.0% |
| TCTTGCTTGCACATGTCCCA+AGG | + | chr1_2:6615849-6615868 | None:intergenic | 50.0% | |
| CGAACACGCTGATACTGCTA+AGG | + | chr1_2:6615900-6615919 | None:intergenic | 50.0% | |
| CTGTGGATCCTACAGTCACA+TGG | - | chr1_2:6616793-6616812 | Msa0052380:intron | 50.0% | |
| GATCCTACAGTCACATGGCT+TGG | - | chr1_2:6616798-6616817 | Msa0052380:intron | 50.0% | |
| AAGGAATGCAGCACAGACAC+TGG | + | chr1_2:6616956-6616975 | None:intergenic | 50.0% | |
| CGACACAAAATCTGCGGCAA+CGG | - | chr1_2:6616984-6617003 | Msa0052380:CDS | 50.0% | |
| TCTGCGGCAACGGTTACATT+TGG | - | chr1_2:6616994-6617013 | Msa0052380:CDS | 50.0% | |
| AGAATGCTGACAGACCAAGG+TGG | + | chr1_2:6617039-6617058 | None:intergenic | 50.0% | |
| GGAAGAATGCTGACAGACCA+AGG | + | chr1_2:6617042-6617061 | None:intergenic | 50.0% | |
| ! | CCACGGGAGTCATCCTTTTA+TGG | + | chr1_2:6617217-6617236 | None:intergenic | 50.0% |
| CCATAAAAGGATGACTCCCG+TGG | - | chr1_2:6617214-6617233 | Msa0052380:CDS | 50.0% | |
| ! | TAGTGTTGCTGTGGGTCTTC+CGG | - | chr1_2:6617762-6617781 | Msa0052380:intron | 50.0% |
| ! | TGTTCGATGCACACCCCTTT+TGG | - | chr1_2:6617797-6617816 | Msa0052380:CDS | 50.0% |
| TGCGACCAGAGCAACCAAAA+GGG | + | chr1_2:6617814-6617833 | None:intergenic | 50.0% | |
| AGGGGACAAGAGACTTGTCT+TGG | - | chr1_2:6617977-6617996 | Msa0052380:intron | 50.0% | |
| GCCAATGACGACCAATGCTT+TGG | + | chr1_2:6618411-6618430 | None:intergenic | 50.0% | |
| GGTCATGGTTGAGTCCAAGT+GGG | - | chr1_2:6618634-6618653 | Msa0052380:CDS | 50.0% | |
| ACAACCAAGACGTTCCCACT+TGG | + | chr1_2:6618651-6618670 | None:intergenic | 50.0% | |
| GTTGTGCTTGAAGAATGGGG+AGG | - | chr1_2:6618666-6618685 | Msa0052380:intron | 50.0% | |
| TGGGCTGCTCAAATGGCTGT+AGG | - | chr1_2:6615807-6615826 | Msa0052380:CDS | 55.0% | |
| ! | GGACTGAGAATTGGTCTGGC+TGG | - | chr1_2:6616184-6616203 | Msa0052380:intron | 55.0% |
| GGAATCGTCGTCACTGGAGT+AGG | + | chr1_2:6617279-6617298 | None:intergenic | 55.0% | |
| !! | CACACCCCTTTTGGTTGCTC+TGG | - | chr1_2:6617806-6617825 | Msa0052380:CDS | 55.0% |
| GCGACCAGAGCAACCAAAAG+GGG | + | chr1_2:6617813-6617832 | None:intergenic | 55.0% | |
| GTGCGACCAGAGCAACCAAA+AGG | + | chr1_2:6617815-6617834 | None:intergenic | 55.0% | |
| CTTGGACTCAACCATGACCG+AGG | + | chr1_2:6618633-6618652 | None:intergenic | 55.0% | |
| CGGTCATGGTTGAGTCCAAG+TGG | - | chr1_2:6618633-6618652 | Msa0052380:CDS | 55.0% | |
| GAGTCCAAGTGGGAACGTCT+TGG | - | chr1_2:6618644-6618663 | Msa0052380:CDS | 55.0% | |
| TCGTCGTCACTGGAGTAGGC+AGG | + | chr1_2:6617275-6617294 | None:intergenic | 60.0% | |
| ACAACCTTTGACGCGCCGAG+TGG | - | chr1_2:6618325-6618344 | Msa0052380:intron | 60.0% | |
| GAATGGGGAGGTGACCCTAC+TGG | - | chr1_2:6618678-6618697 | Msa0052380:intron | 60.0% | |
| GCCACTGGATCGCTGCCACT+CGG | + | chr1_2:6618343-6618362 | None:intergenic | 65.0% | |
| GCTGCCACTCGGCGCGTCAA+AGG | + | chr1_2:6618332-6618351 | None:intergenic | 70.0% | |
| GCCGAGTGGCAGCGATCCAG+TGG | - | chr1_2:6618339-6618358 | Msa0052380:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 6614907 | 6619072 | 6614907 | ID=Msa0052380;Name=Msa0052380 |
| chr1_2 | mRNA | 6614907 | 6619072 | 6614907 | ID=Msa0052380-mRNA-1;Parent=Msa0052380;Name=Msa0052380-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.93|0.88|1|1|1|17|347|662 |
| chr1_2 | exon | 6614907 | 6615359 | 6614907 | ID=Msa0052380-mRNA-1:exon:2197;Parent=Msa0052380-mRNA-1 |
| chr1_2 | exon | 6615449 | 6615654 | 6615449 | ID=Msa0052380-mRNA-1:exon:2196;Parent=Msa0052380-mRNA-1 |
| chr1_2 | exon | 6615749 | 6615859 | 6615749 | ID=Msa0052380-mRNA-1:exon:2195;Parent=Msa0052380-mRNA-1 |
| chr1_2 | exon | 6615962 | 6616072 | 6615962 | ID=Msa0052380-mRNA-1:exon:2194;Parent=Msa0052380-mRNA-1 |
| chr1_2 | exon | 6616196 | 6616305 | 6616196 | ID=Msa0052380-mRNA-1:exon:2193;Parent=Msa0052380-mRNA-1 |
| chr1_2 | exon | 6616395 | 6616504 | 6616395 | ID=Msa0052380-mRNA-1:exon:2192;Parent=Msa0052380-mRNA-1 |
| chr1_2 | exon | 6616607 | 6616782 | 6616607 | ID=Msa0052380-mRNA-1:exon:2191;Parent=Msa0052380-mRNA-1 |
| chr1_2 | exon | 6616884 | 6617048 | 6616884 | ID=Msa0052380-mRNA-1:exon:2190;Parent=Msa0052380-mRNA-1 |
| chr1_2 | exon | 6617173 | 6617264 | 6617173 | ID=Msa0052380-mRNA-1:exon:2189;Parent=Msa0052380-mRNA-1 |
| chr1_2 | exon | 6617346 | 6617433 | 6617346 | ID=Msa0052380-mRNA-1:exon:2188;Parent=Msa0052380-mRNA-1 |
| chr1_2 | exon | 6617566 | 6617671 | 6617566 | ID=Msa0052380-mRNA-1:exon:2187;Parent=Msa0052380-mRNA-1 |
| chr1_2 | exon | 6617774 | 6617862 | 6617774 | ID=Msa0052380-mRNA-1:exon:2186;Parent=Msa0052380-mRNA-1 |
| chr1_2 | exon | 6618092 | 6618235 | 6618092 | ID=Msa0052380-mRNA-1:exon:2185;Parent=Msa0052380-mRNA-1 |
| chr1_2 | exon | 6618393 | 6618485 | 6618393 | ID=Msa0052380-mRNA-1:exon:2184;Parent=Msa0052380-mRNA-1 |
| chr1_2 | exon | 6618604 | 6618670 | 6618604 | ID=Msa0052380-mRNA-1:exon:2183;Parent=Msa0052380-mRNA-1 |
| chr1_2 | exon | 6618770 | 6618882 | 6618770 | ID=Msa0052380-mRNA-1:exon:2182;Parent=Msa0052380-mRNA-1 |
| chr1_2 | exon | 6618971 | 6619072 | 6618971 | ID=Msa0052380-mRNA-1:exon:2181;Parent=Msa0052380-mRNA-1 |
| chr1_2 | CDS | 6618971 | 6619072 | 6618971 | ID=Msa0052380-mRNA-1:cds;Parent=Msa0052380-mRNA-1 |
| chr1_2 | CDS | 6618770 | 6618882 | 6618770 | ID=Msa0052380-mRNA-1:cds;Parent=Msa0052380-mRNA-1 |
| chr1_2 | CDS | 6618604 | 6618670 | 6618604 | ID=Msa0052380-mRNA-1:cds;Parent=Msa0052380-mRNA-1 |
| chr1_2 | CDS | 6618393 | 6618485 | 6618393 | ID=Msa0052380-mRNA-1:cds;Parent=Msa0052380-mRNA-1 |
| chr1_2 | CDS | 6618092 | 6618235 | 6618092 | ID=Msa0052380-mRNA-1:cds;Parent=Msa0052380-mRNA-1 |
| chr1_2 | CDS | 6617774 | 6617862 | 6617774 | ID=Msa0052380-mRNA-1:cds;Parent=Msa0052380-mRNA-1 |
| chr1_2 | CDS | 6617566 | 6617671 | 6617566 | ID=Msa0052380-mRNA-1:cds;Parent=Msa0052380-mRNA-1 |
| chr1_2 | CDS | 6617346 | 6617433 | 6617346 | ID=Msa0052380-mRNA-1:cds;Parent=Msa0052380-mRNA-1 |
| chr1_2 | CDS | 6617173 | 6617264 | 6617173 | ID=Msa0052380-mRNA-1:cds;Parent=Msa0052380-mRNA-1 |
| chr1_2 | CDS | 6616884 | 6617048 | 6616884 | ID=Msa0052380-mRNA-1:cds;Parent=Msa0052380-mRNA-1 |
| chr1_2 | CDS | 6616607 | 6616782 | 6616607 | ID=Msa0052380-mRNA-1:cds;Parent=Msa0052380-mRNA-1 |
| chr1_2 | CDS | 6616395 | 6616504 | 6616395 | ID=Msa0052380-mRNA-1:cds;Parent=Msa0052380-mRNA-1 |
| chr1_2 | CDS | 6616196 | 6616305 | 6616196 | ID=Msa0052380-mRNA-1:cds;Parent=Msa0052380-mRNA-1 |
| chr1_2 | CDS | 6615962 | 6616072 | 6615962 | ID=Msa0052380-mRNA-1:cds;Parent=Msa0052380-mRNA-1 |
| chr1_2 | CDS | 6615749 | 6615859 | 6615749 | ID=Msa0052380-mRNA-1:cds;Parent=Msa0052380-mRNA-1 |
| chr1_2 | CDS | 6615449 | 6615654 | 6615449 | ID=Msa0052380-mRNA-1:cds;Parent=Msa0052380-mRNA-1 |
| chr1_2 | CDS | 6615254 | 6615359 | 6615254 | ID=Msa0052380-mRNA-1:cds;Parent=Msa0052380-mRNA-1 |
| chr1_2 | three_prime_UTR | 6614907 | 6615253 | 6614907 | ID=Msa0052380-mRNA-1:three_prime_utr;Parent=Msa0052380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
