AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0704520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0704520 MtrunA17_Chr8g0382641 97.628 506 12 0 1 506 1 506 0.0 1024
Msa0704520 MtrunA17_Chr3g0079451 66.387 476 155 3 31 506 3 473 0.0 677
Msa0704520 MtrunA17_Chr3g0079461 65.336 476 160 4 31 506 27 497 0.0 652
Msa0704520 MtrunA17_Chr3g0079441 61.055 493 185 5 14 506 6 491 0.0 635
Msa0704520 MtrunA17_Chr3g0079431 61.134 494 181 6 14 506 6 489 0.0 632
Msa0704520 MtrunA17_Chr5g0425361 54.990 511 216 7 1 506 6 507 0.0 582
Msa0704520 MtrunA17_Chr5g0425401 53.937 508 219 8 4 506 8 505 0.0 556
Msa0704520 MtrunA17_Chr3g0123661 47.390 479 240 7 33 506 34 505 6.51e-154 449
Msa0704520 MtrunA17_Chr5g0425351 42.920 226 86 6 226 448 19 204 3.27e-52 176
Msa0704520 MtrunA17_Chr5g0425301 54.545 77 34 1 378 453 1 77 4.04e-20 84.7
Msa0704520 MtrunA17_Chr5g0425291 56.140 57 24 1 222 278 17 72 5.93e-17 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 115 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCCATTGGGAAACTTTC+AGG 0.085311 4_4:-76969299 Msa0704520:CDS
AAACAAATTAGTGGCTAATT+TGG 0.131032 4_4:-76968955 Msa0704520:CDS
GACCATAACCATTTGTAATT+TGG 0.144880 4_4:+76968629 None:intergenic
TTCAGATACATGTCAGAAAA+TGG 0.172150 4_4:-76967998 Msa0704520:CDS
TTGACTGACACCATTCTAAA+AGG 0.276822 4_4:-76968658 Msa0704520:CDS
GCTCTTATTCGAACCTTGTT+TGG 0.284470 4_4:+76968882 None:intergenic
AAGCTGTGAACCTTGGAAAT+TGG 0.296076 4_4:-76969616 Msa0704520:CDS
CTTAATTACCCTCATGATCT+TGG 0.300109 4_4:+76968594 None:intergenic
AAGTATCTCTGCGCAGAAAA+TGG 0.313062 4_4:-76969357 Msa0704520:CDS
TACATTTGGATGGGCATATT+GGG 0.314418 4_4:-76966300 Msa0704520:CDS
ATGGAACCTTCTCTCTTTGA+TGG 0.321798 4_4:-76969575 Msa0704520:CDS
CTACATTTGGATGGGCATAT+TGG 0.324675 4_4:-76966301 Msa0704520:CDS
TGAGCCTCAAGGAGTTGATT+TGG 0.327335 4_4:-76966975 Msa0704520:CDS
TAATGTAATTGCAGTAAGTA+TGG 0.328002 4_4:-76967760 Msa0704520:intron
TCAAATGTTTCCTTGTTTCC+AGG 0.331392 4_4:+76968927 None:intergenic
GCTGCACCAGCTTCACAAAA+TGG 0.342497 4_4:-76967712 Msa0704520:CDS
ATGATCTTGGAAGCTTTGTC+TGG 0.347957 4_4:+76968607 None:intergenic
CTTGTACCTTCATAAATTGT+TGG 0.360711 4_4:+76966342 None:intergenic
GTGGGATTGGAAGATGAAAA+TGG 0.361512 4_4:-76968981 Msa0704520:CDS
AGATCTCTGACCACATCTAA+TGG 0.388185 4_4:-76966713 Msa0704520:CDS
GTATACTCTCGAGCTACATT+TGG 0.394176 4_4:-76966314 Msa0704520:CDS
CAGGGGAATGGAGCGGTGAC+TGG 0.399248 4_4:-76966394 Msa0704520:CDS
GAGCCTCAAGGAGTTGATTT+GGG 0.402075 4_4:-76966974 Msa0704520:CDS
CCCAATGGAAAGCTTTGGTC+CGG 0.402802 4_4:+76969310 None:intergenic
TAATAAGCAATTTGTGGGAT+TGG 0.405438 4_4:-76968994 Msa0704520:CDS
TTGTACCTTCATAAATTGTT+GGG 0.410836 4_4:+76966343 None:intergenic
ACCTGTAGAAACAGACCATT+TGG 0.415494 4_4:+76968858 None:intergenic
TACCAAATTACAAATGGTTA+TGG 0.415761 4_4:-76968631 Msa0704520:CDS
AATGGACCCCTCATCTTTGT+TGG 0.417428 4_4:-76966695 Msa0704520:intron
AGTTTCCCAATGGAAAGCTT+TGG 0.427423 4_4:+76969305 None:intergenic
CAAGGGATGGTTATCGAGAA+TGG 0.431434 4_4:-76967672 Msa0704520:CDS
ACAAATGGCTTTGGTGGTGT+TGG 0.433057 4_4:+76967929 None:intergenic
TTCAAGGATCCTCCAACAAA+TGG 0.438681 4_4:+76967914 None:intergenic
ACACCACCAAAGCCATTTGT+TGG 0.439864 4_4:-76967926 Msa0704520:CDS
AAGCAGGTTATGATGCTGTT+AGG 0.443304 4_4:-76966931 Msa0704520:CDS
CAAATGGCTTTGGTGGTGTT+GGG 0.444244 4_4:+76967930 None:intergenic
ACTCACTAGAGTCTCTGATA+TGG 0.445502 4_4:+76968747 None:intergenic
GAACTATTGTTGTTGCCAAC+CGG 0.452412 4_4:-76969329 Msa0704520:CDS
AAGGGATGGTTATCGAGAAT+GGG 0.457232 4_4:-76967671 Msa0704520:CDS
AGGGTCACTATCCTCCCAAC+TGG 0.457954 4_4:+76968702 None:intergenic
TTTCCATTGGGAAACTTTCA+GGG 0.458328 4_4:-76969298 Msa0704520:intron
GTGAATTAAACCTTTGAGCT+AGG 0.459213 4_4:+76967608 None:intergenic
GATCCTCCAACAAATGGCTT+TGG 0.463311 4_4:+76967920 None:intergenic
TCAGATACATGTCAGAAAAT+GGG 0.464228 4_4:-76967997 Msa0704520:CDS
CCTCCAACAAATGGCTTTGG+TGG 0.466401 4_4:+76967923 None:intergenic
TATTGGGGATGCAGGATCAC+TGG 0.469409 4_4:-76968045 Msa0704520:intron
AGAGATAGAAAATGAACAAA+AGG 0.470252 4_4:+76969693 None:intergenic
TGTGATAATGTCTAACCCTC+TGG 0.470292 4_4:-76966888 Msa0704520:CDS
CAACTCAAAGCTGTGAACCT+TGG 0.471493 4_4:-76969623 Msa0704520:CDS
ACAAATGTGACTCTAACAAC+TGG 0.478443 4_4:-76966274 Msa0704520:CDS
TCAGAATTCCCGTGGGGTGG+TGG 0.478604 4_4:-76967964 Msa0704520:CDS
ATTGGTTGGTTACTGAAGGA+TGG 0.479950 4_4:-76969598 Msa0704520:CDS
ACCGGACCAAAGCTTTCCAT+TGG 0.486084 4_4:-76969311 Msa0704520:CDS
TTCTTCTATTTCTGATACTG+TGG 0.494299 4_4:-76967644 Msa0704520:CDS
GTGTCTAATAAGCAATTTGT+GGG 0.494697 4_4:-76968999 Msa0704520:CDS
GATGGAATTTGGCAGGGGAA+TGG 0.495782 4_4:-76966406 Msa0704520:intron
GGAGAATACCAAATTACAAA+TGG 0.503549 4_4:-76968637 Msa0704520:CDS
TAGATGTGGTCAGAGATCTA+AGG 0.505597 4_4:+76966717 None:intergenic
CTAACAACTGGAGTCTTAAG+TGG 0.511323 4_4:-76966262 Msa0704520:CDS
CCGGACCAAAGCTTTCCATT+GGG 0.514474 4_4:-76969310 Msa0704520:CDS
ACCAAATGGTCTGTTTCTAC+AGG 0.515158 4_4:-76968859 Msa0704520:intron
TTGCAGTAAGTATGGAATGA+AGG 0.515509 4_4:-76967752 Msa0704520:intron
AAATGGAGAAAACAAATTAG+TGG 0.517715 4_4:-76968964 Msa0704520:CDS
CACTTGACAATGCCTTCACA+TGG 0.521824 4_4:-76967889 Msa0704520:CDS
GACTCTAGTGAGTACAGAAA+CGG 0.525597 4_4:-76968737 Msa0704520:CDS
CAGTAACCAACCAATTTCCA+AGG 0.529368 4_4:+76969606 None:intergenic
GTGAAGCTGGTGCAGCATGC+AGG 0.530727 4_4:+76967719 None:intergenic
AGATTCCCAACAATTTATGA+AGG 0.534115 4_4:-76966348 Msa0704520:CDS
GTGGCTAATTTGGATTCACC+TGG 0.534148 4_4:-76968945 Msa0704520:CDS
CCACCAAAGCCATTTGTTGG+AGG 0.539349 4_4:-76967923 Msa0704520:CDS
TTTGGATTCACCTGGAAACA+AGG 0.546873 4_4:-76968937 Msa0704520:CDS
ATGGAAAGCTTTGGTCCGGT+TGG 0.547861 4_4:+76969314 None:intergenic
GTATGGAATGAAGGTAATTG+TGG 0.549760 4_4:-76967743 Msa0704520:CDS
CTATAGACTTCCTAGCTCAA+AGG 0.550341 4_4:-76967618 Msa0704520:intron
CTATCAAAAGCTCTAACAAA+CGG 0.553618 4_4:+76966842 None:intergenic
ACTCTCGAGCTACATTTGGA+TGG 0.555900 4_4:-76966310 Msa0704520:CDS
TTTATTCCATCAAAGAGAGA+AGG 0.556288 4_4:+76969569 None:intergenic
AGTGTCTAATAAGCAATTTG+TGG 0.557110 4_4:-76969000 Msa0704520:CDS
GGTTTATGAAGAATCCAGTT+GGG 0.558970 4_4:-76968716 Msa0704520:CDS
CTCTCGAGCTACATTTGGAT+GGG 0.559815 4_4:-76966309 Msa0704520:CDS
CGTGGGGTGGTGGATAGCTA+AGG 0.561788 4_4:-76967954 Msa0704520:CDS
GGAATGGAGCGGTGACTGGA+AGG 0.564154 4_4:-76966390 Msa0704520:CDS
ACAATTTATGAAGGTACAAG+TGG 0.567898 4_4:-76966339 Msa0704520:CDS
TTAGCTATCCACCACCCCAC+GGG 0.571193 4_4:+76967956 None:intergenic
GGAAATTGGTTGGTTACTGA+AGG 0.581283 4_4:-76969602 Msa0704520:CDS
AGGCTTACCAACAAAGATGA+GGG 0.583744 4_4:+76966688 None:intergenic
GCTCATAGTGCAACAAGGGA+TGG 0.586890 4_4:-76967685 Msa0704520:CDS
CTCTGCGCAGAAAATGGTGG+AGG 0.588597 4_4:-76969351 Msa0704520:CDS
GTTGGTTACTGAAGGATGGA+TGG 0.590842 4_4:-76969594 Msa0704520:CDS
CGGTTTATGAAGAATCCAGT+TGG 0.595000 4_4:-76968717 Msa0704520:CDS
CCTTAACTGTGCCCATGTGA+AGG 0.595136 4_4:+76967877 None:intergenic
GTTCGAATAAGAGCACCAAA+TGG 0.596929 4_4:-76968873 Msa0704520:CDS
CTTAGCTATCCACCACCCCA+CGG 0.600853 4_4:+76967955 None:intergenic
TGTGAACCTTGGAAATTGGT+TGG 0.604612 4_4:-76969612 Msa0704520:CDS
CAGTCAGAATTCCCGTGGGG+TGG 0.607298 4_4:-76967967 Msa0704520:CDS
ACAAAGCTTCCAAGATCATG+AGG 0.610942 4_4:-76968603 Msa0704520:CDS
AAATGCAGTCAGAATTCCCG+TGG 0.611238 4_4:-76967972 Msa0704520:CDS
TGACCCTGAAAGTTTCCCAA+TGG 0.616521 4_4:+76969295 None:intergenic
CAACTCATGAATGAGCCTCA+AGG 0.620097 4_4:-76966986 Msa0704520:CDS
AAGGCTTACCAACAAAGATG+AGG 0.625272 4_4:+76966687 None:intergenic
GAAGAGCTCATAGTGCAACA+AGG 0.630566 4_4:-76967690 Msa0704520:CDS
TATCTCTGCGCAGAAAATGG+TGG 0.631797 4_4:-76969354 Msa0704520:CDS
CTTCCCAAATCAACTCCTTG+AGG 0.634054 4_4:+76966971 None:intergenic
ATTTATGAAGGTACAAGTGG+AGG 0.636870 4_4:-76966336 Msa0704520:CDS
TTATGAAGAATCCAGTTGGG+AGG 0.640651 4_4:-76968713 Msa0704520:CDS
AGGGATGGTTATCGAGAATG+GGG 0.654790 4_4:-76967670 Msa0704520:CDS
GATGAGGGGTCCATTAGATG+TGG 0.658343 4_4:+76966703 None:intergenic
AAGAGCTCATAGTGCAACAA+GGG 0.661744 4_4:-76967689 Msa0704520:CDS
ACTTGACAATGCCTTCACAT+GGG 0.666696 4_4:-76967888 Msa0704520:CDS
AATGCAGTCAGAATTCCCGT+GGG 0.669618 4_4:-76967971 Msa0704520:CDS
AAATGATGATGATCCAAACA+AGG 0.674155 4_4:-76968895 Msa0704520:CDS
GGCTTACCAACAAAGATGAG+GGG 0.677681 4_4:+76966689 None:intergenic
CAAAGCTTCCAAGATCATGA+GGG 0.680521 4_4:-76968602 Msa0704520:intron
AATTTGGCAGGGGAATGGAG+CGG 0.739241 4_4:-76966401 Msa0704520:intron
ATGCAGTCAGAATTCCCGTG+GGG 0.779982 4_4:-76967970 Msa0704520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATAAAAATAATAATGGAA+TGG + chr4_4:76966493-76966512 None:intergenic 10.0%
!!! AATAAAAAACAATGATCTTT+TGG - chr4_4:76966399-76966418 Msa0704520:intron 15.0%
!! TATTACTAGCTAAAATAATT+TGG - chr4_4:76966523-76966542 Msa0704520:intron 15.0%
!!! TAAAATAATTTGGTAATTTC+AGG - chr4_4:76966533-76966552 Msa0704520:intron 15.0%
!! TTTATTAATAGTAACGTTAT+TGG + chr4_4:76966686-76966705 None:intergenic 15.0%
!!! TCATACTACTAATTTTTTTT+TGG + chr4_4:76966724-76966743 None:intergenic 15.0%
!! ATCAAAATATAATTGAAATC+TGG + chr4_4:76967721-76967740 None:intergenic 15.0%
!! ATTGAAAACTAAAAAATGAA+GGG + chr4_4:76968383-76968402 None:intergenic 15.0%
!! AATTGAAAACTAAAAAATGA+AGG + chr4_4:76968384-76968403 None:intergenic 15.0%
!! AACAAATTAAGAATCAAAAT+TGG + chr4_4:76968489-76968508 None:intergenic 15.0%
!!! ATTTTGATTCTTAATTTGTT+TGG - chr4_4:76968489-76968508 Msa0704520:intron 15.0%
!! GAAACTAATAATATTTCATT+AGG - chr4_4:76968881-76968900 Msa0704520:CDS 15.0%
!!! GAGTTGCAAATTAAATTTTT+TGG + chr4_4:76966314-76966333 None:intergenic 20.0%
!! CATTGATAAAAGAACAAAAT+AGG + chr4_4:76966466-76966485 None:intergenic 20.0%
!!! TAATTTTTTAAACATACGAG+AGG + chr4_4:76966839-76966858 None:intergenic 20.0%
!! AAACTTGTATACAAGTAATA+AGG + chr4_4:76967142-76967161 None:intergenic 20.0%
!!! TTGTCGTTTATTAATTTATC+AGG - chr4_4:76967181-76967200 Msa0704520:intron 20.0%
!!! CTTTTTCAAAAAAGACAATA+AGG + chr4_4:76967386-76967405 None:intergenic 20.0%
!! GGTAAATAAAATAGACTAAA+AGG + chr4_4:76968110-76968129 None:intergenic 20.0%
!! AAGTGAACTTTAAATTTCTA+TGG + chr4_4:76968131-76968150 None:intergenic 20.0%
!! TTACTATAAGTTAAAACCAT+TGG + chr4_4:76968160-76968179 None:intergenic 20.0%
!! TTGAAAACTAAAAAATGAAG+GGG + chr4_4:76968382-76968401 None:intergenic 20.0%
!! ATCAAAATTGGAATAATGTA+TGG + chr4_4:76968477-76968496 None:intergenic 20.0%
!!! TTTGGTTAAATTAGTCTTTT+AGG - chr4_4:76968507-76968526 Msa0704520:intron 20.0%
!! TCTTATATTAGTAGATTGTT+TGG - chr4_4:76968557-76968576 Msa0704520:intron 20.0%
!! TAATAATGTGTATGAAAAGA+AGG + chr4_4:76969286-76969305 None:intergenic 20.0%
! AGAGATAGAAAATGAACAAA+AGG + chr4_4:76966261-76966280 None:intergenic 25.0%
!! ATAATTTGGTAATTTCAGGA+TGG - chr4_4:76966537-76966556 Msa0704520:intron 25.0%
!! GATGATAGTCTTAAAATGAT+TGG + chr4_4:76966759-76966778 None:intergenic 25.0%
! AAATGGAGAAAACAAATTAG+TGG - chr4_4:76966987-76967006 Msa0704520:CDS 25.0%
! AAACAAATTAGTGGCTAATT+TGG - chr4_4:76966996-76967015 Msa0704520:CDS 25.0%
!!! ATATAGTGCTTTTGTTTGTT+TGG - chr4_4:76967116-76967135 Msa0704520:intron 25.0%
! TACCAAATTACAAATGGTTA+TGG - chr4_4:76967320-76967339 Msa0704520:intron 25.0%
!! ACACTTAAAATCTAGAATGT+TGG + chr4_4:76967417-76967436 None:intergenic 25.0%
! TGATCTTGATAAAATTACGA+TGG - chr4_4:76967453-76967472 Msa0704520:intron 25.0%
! TTATTGATAGAGCTATCTAT+TGG - chr4_4:76967889-76967908 Msa0704520:CDS 25.0%
! TATTGATAGAGCTATCTATT+GGG - chr4_4:76967890-76967909 Msa0704520:CDS 25.0%
!! ATAGACTAAAAGGTATAGTA+GGG + chr4_4:76968100-76968119 None:intergenic 25.0%
!! AATAGACTAAAAGGTATAGT+AGG + chr4_4:76968101-76968120 None:intergenic 25.0%
! TAATGTAATTGCAGTAAGTA+TGG - chr4_4:76968191-76968210 Msa0704520:intron 25.0%
!! GTATGGTTGATGTTATAAAT+AGG + chr4_4:76968460-76968479 None:intergenic 25.0%
!!! CTGCTTGATAATACTTTTTA+AGG + chr4_4:76969006-76969025 None:intergenic 25.0%
!!! CTTAAAAAGTATTATCAAGC+AGG - chr4_4:76969004-76969023 Msa0704520:CDS 25.0%
!!! TTCTGAGACACAATTAAATT+TGG + chr4_4:76969425-76969444 None:intergenic 25.0%
!!! AAATGTTTTGTGATGGAATT+TGG - chr4_4:76969534-76969553 Msa0704520:intron 25.0%
! TTGTACCTTCATAAATTGTT+GGG + chr4_4:76969611-76969630 None:intergenic 25.0%
TTTATTCCATCAAAGAGAGA+AGG + chr4_4:76966385-76966404 None:intergenic 30.0%
!!! TTTTTTAAACATACGAGAGG+TGG + chr4_4:76966836-76966855 None:intergenic 30.0%
AGTGTCTAATAAGCAATTTG+TGG - chr4_4:76966951-76966970 Msa0704520:CDS 30.0%
GTGTCTAATAAGCAATTTGT+GGG - chr4_4:76966952-76966971 Msa0704520:CDS 30.0%
TAATAAGCAATTTGTGGGAT+TGG - chr4_4:76966957-76966976 Msa0704520:CDS 30.0%
! AAATGATGATGATCCAAACA+AGG - chr4_4:76967056-76967075 Msa0704520:intron 30.0%
!! CAGTCATTTTGAAAACAGAA+GGG + chr4_4:76967271-76967290 None:intergenic 30.0%
!! ACAGTCATTTTGAAAACAGA+AGG + chr4_4:76967272-76967291 None:intergenic 30.0%
!! TTGGTATTCTCCTTTTAGAA+TGG + chr4_4:76967306-76967325 None:intergenic 30.0%
GGAGAATACCAAATTACAAA+TGG - chr4_4:76967314-76967333 Msa0704520:intron 30.0%
GACCATAACCATTTGTAATT+TGG + chr4_4:76967325-76967344 None:intergenic 30.0%
! TGTTGTATTGATATTGAGAC+CGG + chr4_4:76967492-76967511 None:intergenic 30.0%
CAGTAACAATCAACCAAATT+GGG + chr4_4:76967544-76967563 None:intergenic 30.0%
TCAGTAACAATCAACCAAAT+TGG + chr4_4:76967545-76967564 None:intergenic 30.0%
TACACATTTATGCACACAAA+GGG - chr4_4:76967663-76967682 Msa0704520:CDS 30.0%
GTTAACCATTGAATCAAGAT+CGG - chr4_4:76967690-76967709 Msa0704520:CDS 30.0%
ATTATCCGATCTTGATTCAA+TGG + chr4_4:76967698-76967717 None:intergenic 30.0%
!!! TAAACTTTTGGCTTTGGATT+TGG + chr4_4:76967834-76967853 None:intergenic 30.0%
!!! TTGATCTAAACTTTTGGCTT+TGG + chr4_4:76967840-76967859 None:intergenic 30.0%
!!! GTTGAGTTGATCTAAACTTT+TGG + chr4_4:76967846-76967865 None:intergenic 30.0%
ATTGATAGAGCTATCTATTG+GGG - chr4_4:76967891-76967910 Msa0704520:CDS 30.0%
TTCAGATACATGTCAGAAAA+TGG - chr4_4:76967953-76967972 Msa0704520:CDS 30.0%
TCAGATACATGTCAGAAAAT+GGG - chr4_4:76967954-76967973 Msa0704520:CDS 30.0%
!! TTCTTCTATTTCTGATACTG+TGG - chr4_4:76968307-76968326 Msa0704520:intron 30.0%
GTTGATGTTATAAATAGGAG+TGG + chr4_4:76968455-76968474 None:intergenic 30.0%
CTACTAATATAAGATGCATG+AGG + chr4_4:76968551-76968570 None:intergenic 30.0%
!!! TCGGTTTCGTAGTTTTTTTA+AGG - chr4_4:76968616-76968635 Msa0704520:CDS 30.0%
! CTATCAAAAGCTCTAACAAA+CGG + chr4_4:76969112-76969131 None:intergenic 30.0%
ATTATGTCAACAGAATTCTC+AGG - chr4_4:76969343-76969362 Msa0704520:CDS 30.0%
! CCATCACAAAACATTTTGTT+AGG + chr4_4:76969530-76969549 None:intergenic 30.0%
! CCTAACAAAATGTTTTGTGA+TGG - chr4_4:76969527-76969546 Msa0704520:intron 30.0%
AGATTCCCAACAATTTATGA+AGG - chr4_4:76969603-76969622 Msa0704520:CDS 30.0%
CTTGTACCTTCATAAATTGT+TGG + chr4_4:76969612-76969631 None:intergenic 30.0%
! ACAATTTATGAAGGTACAAG+TGG - chr4_4:76969612-76969631 Msa0704520:CDS 30.0%
TTTCCATTGGGAAACTTTCA+GGG - chr4_4:76966653-76966672 Msa0704520:intron 35.0%
! TGTTTTGTAACAGTTGTGGA+GGG - chr4_4:76966903-76966922 Msa0704520:CDS 35.0%
! TCAAATGTTTCCTTGTTTCC+AGG + chr4_4:76967027-76967046 None:intergenic 35.0%
GGTTTATGAAGAATCCAGTT+GGG - chr4_4:76967235-76967254 Msa0704520:intron 35.0%
TTGACTGACACCATTCTAAA+AGG - chr4_4:76967293-76967312 Msa0704520:intron 35.0%
CTTAATTACCCTCATGATCT+TGG + chr4_4:76967360-76967379 None:intergenic 35.0%
CTACACATTTATGCACACAA+AGG - chr4_4:76967662-76967681 Msa0704520:CDS 35.0%
AAGTTCACTTTGTCTACCAA+TGG - chr4_4:76968141-76968160 Msa0704520:intron 35.0%
TTGCAGTAAGTATGGAATGA+AGG - chr4_4:76968199-76968218 Msa0704520:intron 35.0%
GTATGGAATGAAGGTAATTG+TGG - chr4_4:76968208-76968227 Msa0704520:intron 35.0%
GTGAATTAAACCTTTGAGCT+AGG + chr4_4:76968346-76968365 None:intergenic 35.0%
!! TTTGTTCTGAAACACAGACA+TGG + chr4_4:76968585-76968604 None:intergenic 35.0%
AGAACAAACATCAACAGTGT+CGG - chr4_4:76968597-76968616 Msa0704520:intron 35.0%
GGACTCATATGATATGATCA+AGG - chr4_4:76969364-76969383 Msa0704520:CDS 35.0%
!! TTTTGTGATGGAATTTGGCA+GGG - chr4_4:76969539-76969558 Msa0704520:intron 35.0%
! ATTTATGAAGGTACAAGTGG+AGG - chr4_4:76969615-76969634 Msa0704520:CDS 35.0%
TACATTTGGATGGGCATATT+GGG - chr4_4:76969651-76969670 Msa0704520:CDS 35.0%
ACAAATGTGACTCTAACAAC+TGG - chr4_4:76969677-76969696 Msa0704520:CDS 35.0%
AAGCTGTGAACCTTGGAAAT+TGG - chr4_4:76966335-76966354 Msa0704520:CDS 40.0%
TGTGAACCTTGGAAATTGGT+TGG - chr4_4:76966339-76966358 Msa0704520:CDS 40.0%
CAGTAACCAACCAATTTCCA+AGG + chr4_4:76966348-76966367 None:intergenic 40.0%
! GGAAATTGGTTGGTTACTGA+AGG - chr4_4:76966349-76966368 Msa0704520:CDS 40.0%
! ATTGGTTGGTTACTGAAGGA+TGG - chr4_4:76966353-76966372 Msa0704520:CDS 40.0%
ATGGAACCTTCTCTCTTTGA+TGG - chr4_4:76966376-76966395 Msa0704520:CDS 40.0%
AAGTATCTCTGCGCAGAAAA+TGG - chr4_4:76966594-76966613 Msa0704520:intron 40.0%
! GAACTATTGTTGTTGCCAAC+CGG - chr4_4:76966622-76966641 Msa0704520:intron 40.0%
AGTTTCCCAATGGAAAGCTT+TGG + chr4_4:76966649-76966668 None:intergenic 40.0%
CTTTCCATTGGGAAACTTTC+AGG - chr4_4:76966652-76966671 Msa0704520:intron 40.0%
!! TGGCTGTTTTGTAACAGTTG+TGG - chr4_4:76966899-76966918 Msa0704520:CDS 40.0%
! CTGTTTTGTAACAGTTGTGG+AGG - chr4_4:76966902-76966921 Msa0704520:CDS 40.0%
GTGGGATTGGAAGATGAAAA+TGG - chr4_4:76966970-76966989 Msa0704520:CDS 40.0%
TTTGGATTCACCTGGAAACA+AGG - chr4_4:76967014-76967033 Msa0704520:CDS 40.0%
GCTCTTATTCGAACCTTGTT+TGG + chr4_4:76967072-76967091 None:intergenic 40.0%
!! GTTCGAATAAGAGCACCAAA+TGG - chr4_4:76967078-76967097 Msa0704520:intron 40.0%
!! ACCAAATGGTCTGTTTCTAC+AGG - chr4_4:76967092-76967111 Msa0704520:intron 40.0%
ACCTGTAGAAACAGACCATT+TGG + chr4_4:76967096-76967115 None:intergenic 40.0%
ACTCACTAGAGTCTCTGATA+TGG + chr4_4:76967207-76967226 None:intergenic 40.0%
GACTCTAGTGAGTACAGAAA+CGG - chr4_4:76967214-76967233 Msa0704520:intron 40.0%
CGGTTTATGAAGAATCCAGT+TGG - chr4_4:76967234-76967253 Msa0704520:intron 40.0%
TTATGAAGAATCCAGTTGGG+AGG - chr4_4:76967238-76967257 Msa0704520:intron 40.0%
! ATGATCTTGGAAGCTTTGTC+TGG + chr4_4:76967347-76967366 None:intergenic 40.0%
ACAAAGCTTCCAAGATCATG+AGG - chr4_4:76967348-76967367 Msa0704520:intron 40.0%
CAAAGCTTCCAAGATCATGA+GGG - chr4_4:76967349-76967368 Msa0704520:intron 40.0%
TATTGAGACCGGTAGAATCA+CGG + chr4_4:76967481-76967500 None:intergenic 40.0%
CATTAGATGAGAGCGAGAAT+AGG - chr4_4:76967621-76967640 Msa0704520:CDS 40.0%
TCCATGCATTCAAGGAGTTA+GGG + chr4_4:76967799-76967818 None:intergenic 40.0%
ATCCATGCATTCAAGGAGTT+AGG + chr4_4:76967800-76967819 None:intergenic 40.0%
TTCAAGGATCCTCCAACAAA+TGG + chr4_4:76968040-76968059 None:intergenic 40.0%
! GGCATTGTCAAGTGTTTTCA+AGG + chr4_4:76968056-76968075 None:intergenic 40.0%
ACTTGACAATGCCTTCACAT+GGG - chr4_4:76968063-76968082 Msa0704520:intron 40.0%
AAGAGCTCATAGTGCAACAA+GGG - chr4_4:76968262-76968281 Msa0704520:intron 40.0%
AAGGGATGGTTATCGAGAAT+GGG - chr4_4:76968280-76968299 Msa0704520:intron 40.0%
CTATAGACTTCCTAGCTCAA+AGG - chr4_4:76968333-76968352 Msa0704520:intron 40.0%
CTTAGCAGTTAGCATGTGTT+TGG + chr4_4:76968708-76968727 None:intergenic 40.0%
AAGCAGGTTATGATGCTGTT+AGG - chr4_4:76969020-76969039 Msa0704520:CDS 40.0%
! TGTGATAATGTCTAACCCTC+TGG - chr4_4:76969063-76969082 Msa0704520:intron 40.0%
!! CTTTTGAGTCTCTATCCAGA+GGG + chr4_4:76969081-76969100 None:intergenic 40.0%
!! ACTTTTGAGTCTCTATCCAG+AGG + chr4_4:76969082-76969101 None:intergenic 40.0%
TAGATGTGGTCAGAGATCTA+AGG + chr4_4:76969237-76969256 None:intergenic 40.0%
AGATCTCTGACCACATCTAA+TGG - chr4_4:76969238-76969257 Msa0704520:intron 40.0%
AGGCTTACCAACAAAGATGA+GGG + chr4_4:76969266-76969285 None:intergenic 40.0%
AAGGCTTACCAACAAAGATG+AGG + chr4_4:76969267-76969286 None:intergenic 40.0%
!! GTTTTGTGATGGAATTTGGC+AGG - chr4_4:76969538-76969557 Msa0704520:intron 40.0%
! TTTGTGATGGAATTTGGCAG+GGG - chr4_4:76969540-76969559 Msa0704520:intron 40.0%
GTATACTCTCGAGCTACATT+TGG - chr4_4:76969637-76969656 Msa0704520:CDS 40.0%
CTACATTTGGATGGGCATAT+TGG - chr4_4:76969650-76969669 Msa0704520:CDS 40.0%
CTAACAACTGGAGTCTTAAG+TGG - chr4_4:76969689-76969708 Msa0704520:CDS 40.0%
CAACTCAAAGCTGTGAACCT+TGG - chr4_4:76966328-76966347 Msa0704520:CDS 45.0%
GTTGGTTACTGAAGGATGGA+TGG - chr4_4:76966357-76966376 Msa0704520:CDS 45.0%
TATCTCTGCGCAGAAAATGG+TGG - chr4_4:76966597-76966616 Msa0704520:intron 45.0%
TGACCCTGAAAGTTTCCCAA+TGG + chr4_4:76966659-76966678 None:intergenic 45.0%
GTGGCTAATTTGGATTCACC+TGG - chr4_4:76967006-76967025 Msa0704520:CDS 45.0%
TCCCTAACTCCTTGAATGCA+TGG - chr4_4:76967795-76967814 Msa0704520:intron 45.0%
GTGAGCAATCCATGCATTCA+AGG + chr4_4:76967807-76967826 None:intergenic 45.0%
AAATGCAGTCAGAATTCCCG+TGG - chr4_4:76967979-76967998 Msa0704520:CDS 45.0%
AATGCAGTCAGAATTCCCGT+GGG - chr4_4:76967980-76967999 Msa0704520:CDS 45.0%
!! CAAATGGCTTTGGTGGTGTT+GGG + chr4_4:76968024-76968043 None:intergenic 45.0%
!! ACAAATGGCTTTGGTGGTGT+TGG + chr4_4:76968025-76968044 None:intergenic 45.0%
ACACCACCAAAGCCATTTGT+TGG - chr4_4:76968025-76968044 Msa0704520:CDS 45.0%
GATCCTCCAACAAATGGCTT+TGG + chr4_4:76968034-76968053 None:intergenic 45.0%
CACTTGACAATGCCTTCACA+TGG - chr4_4:76968062-76968081 Msa0704520:intron 45.0%
! GCTCTTCCATTTTGTGAAGC+TGG + chr4_4:76968248-76968267 None:intergenic 45.0%
GAAGAGCTCATAGTGCAACA+AGG - chr4_4:76968261-76968280 Msa0704520:intron 45.0%
CAAGGGATGGTTATCGAGAA+TGG - chr4_4:76968279-76968298 Msa0704520:intron 45.0%
AGGGATGGTTATCGAGAATG+GGG - chr4_4:76968281-76968300 Msa0704520:intron 45.0%
! ACTTTGAAGGATCGGCTACA+TGG + chr4_4:76968658-76968677 None:intergenic 45.0%
CAACTCATGAATGAGCCTCA+AGG - chr4_4:76968965-76968984 Msa0704520:CDS 45.0%
! TGAGCCTCAAGGAGTTGATT+TGG - chr4_4:76968976-76968995 Msa0704520:CDS 45.0%
! GAGCCTCAAGGAGTTGATTT+GGG - chr4_4:76968977-76968996 Msa0704520:CDS 45.0%
CTTCCCAAATCAACTCCTTG+AGG + chr4_4:76968983-76969002 None:intergenic 45.0%
AATGGACCCCTCATCTTTGT+TGG - chr4_4:76969256-76969275 Msa0704520:intron 45.0%
GGCTTACCAACAAAGATGAG+GGG + chr4_4:76969265-76969284 None:intergenic 45.0%
ACTCTCGAGCTACATTTGGA+TGG - chr4_4:76969641-76969660 Msa0704520:CDS 45.0%
CTCTCGAGCTACATTTGGAT+GGG - chr4_4:76969642-76969661 Msa0704520:CDS 45.0%
!! TTCATTTATAAAAATAATAA+TGG + chr4_4:76966498-76966517 None:intergenic 5.0%
!!! TAATATATTTATTTAATTTG+TGG - chr4_4:76966879-76966898 Msa0704520:CDS 5.0%
!! AAAAAAAAAGAAAAAAAAAA+GGG + chr4_4:76968413-76968432 None:intergenic 5.0%
!! AAAAAAAAAAGAAAAAAAAA+AGG + chr4_4:76968414-76968433 None:intergenic 5.0%
! ATGGAAAGCTTTGGTCCGGT+TGG + chr4_4:76966640-76966659 None:intergenic 50.0%
ACCGGACCAAAGCTTTCCAT+TGG - chr4_4:76966640-76966659 Msa0704520:intron 50.0%
! CCCAATGGAAAGCTTTGGTC+CGG + chr4_4:76966644-76966663 None:intergenic 50.0%
CCGGACCAAAGCTTTCCATT+GGG - chr4_4:76966641-76966660 Msa0704520:intron 50.0%
TATGTCCACGCGTCCCAATT+TGG - chr4_4:76967528-76967547 Msa0704520:intron 50.0%
ATCAACCAAATTGGGACGCG+TGG + chr4_4:76967536-76967555 None:intergenic 50.0%
GAGCTATCTATTGGGGATGC+AGG - chr4_4:76967898-76967917 Msa0704520:CDS 50.0%
TATTGGGGATGCAGGATCAC+TGG - chr4_4:76967906-76967925 Msa0704520:CDS 50.0%
ATGCAGTCAGAATTCCCGTG+GGG - chr4_4:76967981-76968000 Msa0704520:CDS 50.0%
!! CCTCCAACAAATGGCTTTGG+TGG + chr4_4:76968031-76968050 None:intergenic 50.0%
! CCACCAAAGCCATTTGTTGG+AGG - chr4_4:76968028-76968047 Msa0704520:CDS 50.0%
CCTTAACTGTGCCCATGTGA+AGG + chr4_4:76968077-76968096 None:intergenic 50.0%
CCTTCACATGGGCACAGTTA+AGG - chr4_4:76968074-76968093 Msa0704520:intron 50.0%
GCTGCACCAGCTTCACAAAA+TGG - chr4_4:76968239-76968258 Msa0704520:intron 50.0%
GCTCATAGTGCAACAAGGGA+TGG - chr4_4:76968266-76968285 Msa0704520:intron 50.0%
! CAGACGCGACTTTGAAGGAT+CGG + chr4_4:76968666-76968685 None:intergenic 50.0%
GATGAGGGGTCCATTAGATG+TGG + chr4_4:76969251-76969270 None:intergenic 50.0%
GATGGAATTTGGCAGGGGAA+TGG - chr4_4:76969545-76969564 Msa0704520:intron 50.0%
AATTTGGCAGGGGAATGGAG+CGG - chr4_4:76969550-76969569 Msa0704520:intron 50.0%
CTCTGCGCAGAAAATGGTGG+AGG - chr4_4:76966600-76966619 Msa0704520:intron 55.0%
AGGGTCACTATCCTCCCAAC+TGG + chr4_4:76967252-76967271 None:intergenic 55.0%
CGATGGAGCCGTGATTCTAC+CGG - chr4_4:76967470-76967489 Msa0704520:intron 55.0%
TTAGCTATCCACCACCCCAC+GGG + chr4_4:76967998-76968017 None:intergenic 55.0%
CTTAGCTATCCACCACCCCA+CGG + chr4_4:76967999-76968018 None:intergenic 55.0%
AGACGCAGACGCGACTTTGA+AGG + chr4_4:76968671-76968690 None:intergenic 55.0%
CAGTCAGAATTCCCGTGGGG+TGG - chr4_4:76967984-76968003 Msa0704520:CDS 60.0%
TCAGAATTCCCGTGGGGTGG+TGG - chr4_4:76967987-76968006 Msa0704520:CDS 60.0%
!! CGTGGGGTGGTGGATAGCTA+AGG - chr4_4:76967997-76968016 Msa0704520:CDS 60.0%
GTGAAGCTGGTGCAGCATGC+AGG + chr4_4:76968235-76968254 None:intergenic 60.0%
GGAATGGAGCGGTGACTGGA+AGG - chr4_4:76969561-76969580 Msa0704520:CDS 60.0%
CAGGGGAATGGAGCGGTGAC+TGG - chr4_4:76969557-76969576 Msa0704520:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 76966232 76969741 76966232 ID=Msa0704520;Name=Msa0704520
chr4_4 mRNA 76966232 76969741 76966232 ID=Msa0704520-mRNA-1;Parent=Msa0704520;Name=Msa0704520-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.71|0.37|1|1|1|8|0|506
chr4_4 exon 76969553 76969741 76969553 ID=Msa0704520-mRNA-1:exon:24262;Parent=Msa0704520-mRNA-1
chr4_4 exon 76969299 76969418 76969299 ID=Msa0704520-mRNA-1:exon:24261;Parent=Msa0704520-mRNA-1
chr4_4 exon 76968860 76969057 76968860 ID=Msa0704520-mRNA-1:exon:24260;Parent=Msa0704520-mRNA-1
chr4_4 exon 76968603 76968770 76968603 ID=Msa0704520-mRNA-1:exon:24259;Parent=Msa0704520-mRNA-1
chr4_4 exon 76967884 76968053 76967884 ID=Msa0704520-mRNA-1:exon:24258;Parent=Msa0704520-mRNA-1
chr4_4 exon 76967619 76967768 76967619 ID=Msa0704520-mRNA-1:exon:24257;Parent=Msa0704520-mRNA-1
chr4_4 exon 76966696 76967039 76966696 ID=Msa0704520-mRNA-1:exon:24256;Parent=Msa0704520-mRNA-1
chr4_4 exon 76966232 76966413 76966232 ID=Msa0704520-mRNA-1:exon:24255;Parent=Msa0704520-mRNA-1
chr4_4 CDS 76969553 76969741 76969553 ID=Msa0704520-mRNA-1:cds;Parent=Msa0704520-mRNA-1
chr4_4 CDS 76969299 76969418 76969299 ID=Msa0704520-mRNA-1:cds;Parent=Msa0704520-mRNA-1
chr4_4 CDS 76968860 76969057 76968860 ID=Msa0704520-mRNA-1:cds;Parent=Msa0704520-mRNA-1
chr4_4 CDS 76968603 76968770 76968603 ID=Msa0704520-mRNA-1:cds;Parent=Msa0704520-mRNA-1
chr4_4 CDS 76967884 76968053 76967884 ID=Msa0704520-mRNA-1:cds;Parent=Msa0704520-mRNA-1
chr4_4 CDS 76967619 76967768 76967619 ID=Msa0704520-mRNA-1:cds;Parent=Msa0704520-mRNA-1
chr4_4 CDS 76966696 76967039 76966696 ID=Msa0704520-mRNA-1:cds;Parent=Msa0704520-mRNA-1
chr4_4 CDS 76966232 76966413 76966232 ID=Msa0704520-mRNA-1:cds;Parent=Msa0704520-mRNA-1
Gene Sequence

>Msa0704520

ATGTGCAACAAATTCTTTTATGTGAACCTTTTGTTCATTTTCTATCTCTCATTATTTCACAATGTTTGTGCTGCTGAAACCAAAAAATTTAATTTGCAACTCAAAGCTGTGAACCTTGGAAATTGGTTGGTTACTGAAGGATGGATGGAACCTTCTCTCTTTGATGGAATAAAAAACAATGATCTTTTGGATGGAACTCATGTGCAATTCATGTCAATGAAATTGCAAAAGTATCTCTGCGCAGAAAATGGTGGAGGAACTATTGTTGTTGCCAACCGGACCAAAGCTTTCCATTGGGAAACTTTCAGGTTGTGGAGGGTGAATGAAACAGCATTTAATTTGAGAGTGTCTAATAAGCAATTTGTGGGATTGGAAGATGAAAATGGAGAAAACAAATTAGTGGCTAATTTGGATTCACCTGGAAACAAGGAAACATTTGAGATTGTAAGAAATGATGATGATCCAAACAAGGTTCGAATAAGAGCACCAAATGGTCTGTTTCTACAGGCCATATCAGAGACTCTAGTGAGTACAGAAACGGTTTATGAAGAATCCAGTTGGGAGGATAGTGACCCTTCTGTTTTCAAAATGACTGTTTTGACTGACACCATTCTAAAAGGAGAATACCAAATTACAAATGGTTATGGTCCAGACAAAGCTTCCAAGATCATGAGGGATCACTGGAAGACGTATATAACAGAAGAAGATTTCAGATACATGTCAGAAAATGGGTTAAATGCAGTCAGAATTCCCGTGGGGTGGTGGATAGCTAAGGACCCAACACCACCAAAGCCATTTGTTGGAGGATCCTTGAAAACACTTGACAATGCCTTCACATGGGCACATAAGTATGGAATGAAGGTAATTGTGGACCTGCATGCTGCACCAGCTTCACAAAATGGAAGAGCTCATAGTGCAACAAGGGATGGTTATCGAGAATGGGGAGATTCTTCTATTTCTGATACTGTGGCAACTATAGACTTCCTAGCTCAAAGATATGCTAACAGAACAAGTTTAATTGCAATACAACTCATGAATGAGCCTCAAGGAGTTGATTTGGGAAGCCTTAAAAAGTATTATCAAGCAGGTTATGATGCTGTTAGGAAATACACGTCAAGTGCTTATGTGATAATGTCTAACCCTCTGGATAGAGACTCAAAAGTGCTTCTACCGTTTGTTAGAGCTTTTGATAGAGTTGTCATTGATGTGCATTACTACAACTTATTTTCTGATCAGTTCTCAAACATGAATGTGAAGCAGAACATTGATTATATTAAATATCATAGAGCTTCTGACCTTAGATCTCTGACCACATCTAATGGACCCCTCATCTTTGTTGGGGAATGGAGCGGTGACTGGAAGGTTAAGAATGCTTCAAAGAAAGATTCCCAACAATTTATGAAGGTACAAGTGGAGGTATACTCTCGAGCTACATTTGGATGGGCATATTGGGCTTACAAATGTGACTCTAACAACTGGAGTCTTAAGTGGTTGCTTGACAATAATTATGTTAAACTATAA

Protein sequence

>Msa0704520

MCNKFFYVNLLFIFYLSLFHNVCAAETKKFNLQLKAVNLGNWLVTEGWMEPSLFDGIKNNDLLDGTHVQFMSMKLQKYLCAENGGGTIVVANRTKAFHWETFRLWRVNETAFNLRVSNKQFVGLEDENGENKLVANLDSPGNKETFEIVRNDDDPNKVRIRAPNGLFLQAISETLVSTETVYEESSWEDSDPSVFKMTVLTDTILKGEYQITNGYGPDKASKIMRDHWKTYITEEDFRYMSENGLNAVRIPVGWWIAKDPTPPKPFVGGSLKTLDNAFTWAHKYGMKVIVDLHAAPASQNGRAHSATRDGYREWGDSSISDTVATIDFLAQRYANRTSLIAIQLMNEPQGVDLGSLKKYYQAGYDAVRKYTSSAYVIMSNPLDRDSKVLLPFVRAFDRVVIDVHYYNLFSDQFSNMNVKQNIDYIKYHRASDLRSLTTSNGPLIFVGEWSGDWKVKNASKKDSQQFMKVQVEVYSRATFGWAYWAYKCDSNNWSLKWLLDNNYVKL*