Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707030 | XP_013447269.1 | 95.745 | 188 | 5 | 2 | 1 | 187 | 1 | 186 | 1.83e-127 | 366 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707030 | sp|Q9FMW4|GEML8_ARATH | 54.878 | 164 | 73 | 1 | 24 | 187 | 55 | 217 | 1.81e-58 | 185 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707030 | A0A072TVV9 | 95.745 | 188 | 5 | 2 | 1 | 187 | 1 | 186 | 8.75e-128 | 366 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0119440 | Msa0707030 | 0.815517 | 8.876147e-52 | -8.615850e-47 |
| Msa0707030 | Msa0707430 | 0.808110 | 3.637227e-50 | -8.615850e-47 |
| Msa0707030 | Msa1400050 | 0.990908 | 6.375693e-185 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707030 | MtrunA17_Chr8g0388871 | 95.745 | 188 | 5 | 2 | 1 | 187 | 1 | 186 | 1.69e-131 | 366 |
| Msa0707030 | MtrunA17_Chr6g0481891 | 76.966 | 178 | 39 | 2 | 10 | 186 | 23 | 199 | 4.55e-95 | 275 |
| Msa0707030 | MtrunA17_Chr1g0162171 | 53.261 | 184 | 85 | 1 | 3 | 186 | 41 | 223 | 7.39e-67 | 204 |
| Msa0707030 | MtrunA17_Chr1g0212091 | 60.000 | 160 | 63 | 1 | 24 | 183 | 60 | 218 | 1.30e-63 | 196 |
| Msa0707030 | MtrunA17_Chr1g0212181 | 52.071 | 169 | 80 | 1 | 18 | 186 | 51 | 218 | 2.92e-57 | 179 |
| Msa0707030 | MtrunA17_Chr1g0212121 | 52.071 | 169 | 80 | 1 | 18 | 186 | 51 | 218 | 2.15e-56 | 177 |
| Msa0707030 | MtrunA17_Chr1g0212171 | 46.409 | 181 | 96 | 1 | 6 | 186 | 42 | 221 | 1.41e-55 | 175 |
| Msa0707030 | MtrunA17_Chr7g0251801 | 41.975 | 162 | 93 | 1 | 23 | 184 | 115 | 275 | 3.16e-42 | 143 |
| Msa0707030 | MtrunA17_Chr3g0133221 | 36.538 | 156 | 97 | 1 | 28 | 183 | 102 | 255 | 1.38e-39 | 135 |
| Msa0707030 | MtrunA17_Chr8g0367701 | 37.888 | 161 | 98 | 1 | 23 | 183 | 109 | 267 | 5.42e-39 | 134 |
| Msa0707030 | MtrunA17_Chr1g0212111 | 60.000 | 110 | 43 | 1 | 75 | 184 | 47 | 155 | 9.57e-38 | 128 |
| Msa0707030 | MtrunA17_Chr2g0315771 | 35.802 | 162 | 102 | 2 | 23 | 183 | 65 | 225 | 1.45e-31 | 114 |
| Msa0707030 | MtrunA17_Chr1g0212131 | 53.333 | 60 | 28 | 0 | 125 | 184 | 3 | 62 | 1.16e-16 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707030 | AT5G23370.1 | 54.878 | 164 | 73 | 1 | 24 | 187 | 55 | 217 | 1.84e-59 | 185 |
| Msa0707030 | AT5G08350.1 | 54.878 | 164 | 73 | 1 | 24 | 187 | 54 | 216 | 1.18e-58 | 183 |
| Msa0707030 | AT5G23350.1 | 54.658 | 161 | 72 | 1 | 24 | 184 | 55 | 214 | 8.41e-57 | 178 |
| Msa0707030 | AT5G23360.1 | 52.174 | 161 | 76 | 1 | 24 | 184 | 47 | 206 | 8.29e-55 | 173 |
| Msa0707030 | AT5G13200.1 | 39.506 | 162 | 97 | 1 | 23 | 184 | 101 | 261 | 1.78e-40 | 138 |
| Msa0707030 | AT1G28200.1 | 37.267 | 161 | 99 | 1 | 23 | 183 | 96 | 254 | 1.25e-39 | 135 |
| Msa0707030 | AT1G28200.2 | 37.267 | 161 | 99 | 1 | 23 | 183 | 96 | 254 | 1.25e-39 | 135 |
| Msa0707030 | AT4G01600.3 | 37.654 | 162 | 101 | 0 | 22 | 183 | 24 | 185 | 9.90e-39 | 131 |
| Msa0707030 | AT2G22475.1 | 35.625 | 160 | 101 | 1 | 24 | 183 | 134 | 291 | 1.28e-38 | 134 |
| Msa0707030 | AT4G01600.1 | 37.888 | 161 | 100 | 0 | 23 | 183 | 64 | 224 | 2.79e-38 | 131 |
| Msa0707030 | AT4G01600.2 | 39.456 | 147 | 89 | 0 | 37 | 183 | 73 | 219 | 1.11e-35 | 125 |
| Msa0707030 | AT5G13200.2 | 41.584 | 101 | 59 | 0 | 23 | 123 | 101 | 201 | 4.74e-24 | 94.4 |
| Msa0707030 | AT2G22475.2 | 33.333 | 117 | 76 | 1 | 24 | 140 | 134 | 248 | 8.79e-21 | 86.7 |
| Msa0707030 | AT4G40100.1 | 31.111 | 135 | 63 | 1 | 49 | 183 | 112 | 216 | 1.34e-19 | 83.2 |
Find 46 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATGGAAATTTCTTATTTC+TGG | 0.091487 | 4_4:-80255810 | None:intergenic |
| CTCACGATGATTCTGAATTT+TGG | 0.150158 | 4_4:+80257003 | Msa0707030:CDS |
| TTTAGCAGTTGCAGTTTCTT+TGG | 0.245252 | 4_4:-80255985 | None:intergenic |
| AGAAACTGCAACTGCTAAAA+TGG | 0.264589 | 4_4:+80255989 | Msa0707030:CDS |
| CAATGTGCAGTAGGGCTAAA+TGG | 0.279415 | 4_4:-80257087 | None:intergenic |
| AGTGTGAAGTTCTATGTAAA+TGG | 0.297354 | 4_4:+80257169 | Msa0707030:three_prime_UTR |
| GATGCAGAAGAGAAGGTTAT+TGG | 0.316549 | 4_4:-80256620 | None:intergenic |
| TCTGAAGGGTAAGTTGAGTT+TGG | 0.345403 | 4_4:+80256424 | Msa0707030:CDS |
| CTTCATTCCTTCACTTTCCA+TGG | 0.345985 | 4_4:+80257536 | Msa0707030:three_prime_UTR |
| AATCCTACATGCAAAACTTC+TGG | 0.347012 | 4_4:-80256039 | None:intergenic |
| AGTTATATACATAAACTTAC+TGG | 0.389837 | 4_4:+80257658 | Msa0707030:three_prime_UTR |
| TTCAGAGTCTCTGATAGTTT+AGG | 0.396250 | 4_4:-80256407 | None:intergenic |
| CTGAAGGGTAAGTTGAGTTT+GGG | 0.410973 | 4_4:+80256425 | Msa0707030:CDS |
| ACAACAGCTGGTCCTATTGC+TGG | 0.416930 | 4_4:+80256551 | Msa0707030:CDS |
| TGAAGGGCAGAATGTGAATC+AGG | 0.430005 | 4_4:+80256953 | Msa0707030:CDS |
| ACCTTCTCTTCTGCATCAAC+GGG | 0.443671 | 4_4:+80256626 | Msa0707030:CDS |
| ATGAAAAGAACTCCAGCAAT+AGG | 0.446868 | 4_4:-80256563 | None:intergenic |
| ATGAATTCTTCTACTTCTAC+AGG | 0.454002 | 4_4:+80255837 | Msa0707030:CDS |
| TAATAATTACGTACCTTGTA+CGG | 0.463291 | 4_4:-80256665 | None:intergenic |
| AACCTTCTCTTCTGCATCAA+CGG | 0.469610 | 4_4:+80256625 | Msa0707030:CDS |
| AAAATCAAACAATGTGCAGT+AGG | 0.473818 | 4_4:-80257096 | None:intergenic |
| GGGCTAAATGGACATTGAAA+TGG | 0.476559 | 4_4:-80257075 | None:intergenic |
| TTTATGTATATAACTAATAG+TGG | 0.492518 | 4_4:-80257650 | None:intergenic |
| GTGTGAAGTTCTATGTAAAT+GGG | 0.492938 | 4_4:+80257170 | Msa0707030:three_prime_UTR |
| TTTATGTTTGAGATGTACAT+AGG | 0.493478 | 4_4:+80257136 | Msa0707030:three_prime_UTR |
| GTAAGTTGAGTTTGGGTGCA+AGG | 0.498584 | 4_4:+80256432 | Msa0707030:CDS |
| AAGATAAAAGAAGTCAATGA+AGG | 0.502485 | 4_4:+80256936 | Msa0707030:CDS |
| TAGAAGAATTCATCAGTGAA+TGG | 0.512531 | 4_4:-80255827 | None:intergenic |
| AGAAGGAGAGAAAGTGTTGA+AGG | 0.521050 | 4_4:+80256508 | Msa0707030:CDS |
| ATAATACAAGAAGGTGGGAG+AGG | 0.525733 | 4_4:+80256455 | Msa0707030:CDS |
| TGTTACTTATACACAACAGC+TGG | 0.553623 | 4_4:+80256539 | Msa0707030:CDS |
| AAATTCATTGCAGTAAAACT+AGG | 0.557356 | 4_4:+80256383 | Msa0707030:intron |
| AAATCAAACAATGTGCAGTA+GGG | 0.570196 | 4_4:-80257095 | None:intergenic |
| TCCCGTTGATGCAGAAGAGA+AGG | 0.582493 | 4_4:-80256627 | None:intergenic |
| AGCACAAGAAAGCAACAACC+AGG | 0.598769 | 4_4:+80256012 | Msa0707030:CDS |
| GCAAGGATAATACAAGAAGG+TGG | 0.599451 | 4_4:+80256449 | Msa0707030:CDS |
| TAATACAAGAAGGTGGGAGA+GGG | 0.599558 | 4_4:+80256456 | Msa0707030:CDS |
| TAAACTATCAGAGACTCTGA+AGG | 0.601920 | 4_4:+80256409 | Msa0707030:CDS |
| GCATGTAGGATTCATGAACA+TGG | 0.604739 | 4_4:+80256050 | Msa0707030:CDS |
| TCTTGTGTTCATAATCACCA+TGG | 0.615060 | 4_4:-80257553 | None:intergenic |
| CAAGGATAATACAAGAAGGT+GGG | 0.615352 | 4_4:+80256450 | Msa0707030:CDS |
| ATAATCACCATGGAAAGTGA+AGG | 0.627057 | 4_4:-80257543 | None:intergenic |
| AGATAAAAGAAGTCAATGAA+GGG | 0.635091 | 4_4:+80256937 | Msa0707030:CDS |
| GACGCGCAAGATACCGTACA+AGG | 0.636816 | 4_4:+80256652 | Msa0707030:CDS |
| AAACTATCAGAGACTCTGAA+GGG | 0.658037 | 4_4:+80256410 | Msa0707030:CDS |
| GGTGCAAGGATAATACAAGA+AGG | 0.670404 | 4_4:+80256446 | Msa0707030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATCAATATTTTTTTTAG+GGG | + | chr4_4:80256285-80256304 | Msa0707030:intron | 10.0% |
| !!! | ATAATCAATATTTTTTTTAG+GGG | + | chr4_4:80256285-80256304 | Msa0707030:intron | 10.0% |
| !!! | TTTTGAATGTAATTAATTGA+AGG | - | chr4_4:80255891-80255910 | None:intergenic | 15.0% |
| !! | AAGAGAGAAAAAAAAAAAAA+AGG | - | chr4_4:80256326-80256345 | None:intergenic | 15.0% |
| !!! | AACATTTTCAAGAATATTTT+TGG | + | chr4_4:80256479-80256498 | Msa0707030:CDS | 15.0% |
| !!! | ATAATTTGGTTTATTGATTT+AGG | + | chr4_4:80256757-80256776 | Msa0707030:intron | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | - | chr4_4:80257314-80257333 | None:intergenic | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | + | chr4_4:80257313-80257332 | Msa0707030:intron | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | + | chr4_4:80257337-80257356 | Msa0707030:intron | 15.0% |
| !!! | CATTTTGAAACAAATTTTTT+TGG | + | chr4_4:80257440-80257459 | Msa0707030:intron | 15.0% |
| !!! | TATAATTTTATACATGCATT+TGG | - | chr4_4:80257614-80257633 | None:intergenic | 15.0% |
| !! | TTTATGTATATAACTAATAG+TGG | - | chr4_4:80257653-80257672 | None:intergenic | 15.0% |
| !!! | TTTTGAATGTAATTAATTGA+AGG | - | chr4_4:80255891-80255910 | None:intergenic | 15.0% |
| !! | AAGAGAGAAAAAAAAAAAAA+AGG | - | chr4_4:80256326-80256345 | None:intergenic | 15.0% |
| !!! | AACATTTTCAAGAATATTTT+TGG | + | chr4_4:80256479-80256498 | Msa0707030:CDS | 15.0% |
| !!! | ATAATTTGGTTTATTGATTT+AGG | + | chr4_4:80256757-80256776 | Msa0707030:intron | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | - | chr4_4:80257314-80257333 | None:intergenic | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | + | chr4_4:80257313-80257332 | Msa0707030:intron | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | + | chr4_4:80257337-80257356 | Msa0707030:intron | 15.0% |
| !!! | CATTTTGAAACAAATTTTTT+TGG | + | chr4_4:80257440-80257459 | Msa0707030:intron | 15.0% |
| !!! | TATAATTTTATACATGCATT+TGG | - | chr4_4:80257614-80257633 | None:intergenic | 15.0% |
| !! | TTTATGTATATAACTAATAG+TGG | - | chr4_4:80257653-80257672 | None:intergenic | 15.0% |
| !!! | TTGATTTGCACTTTATAATT+TGG | + | chr4_4:80256743-80256762 | Msa0707030:intron | 20.0% |
| !!! | ATTTGTTGTATTAACTGTTT+CGG | + | chr4_4:80256859-80256878 | Msa0707030:intron | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | - | chr4_4:80257323-80257342 | None:intergenic | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | + | chr4_4:80257400-80257419 | Msa0707030:intron | 20.0% |
| !! | AGTTATATACATAAACTTAC+TGG | + | chr4_4:80257658-80257677 | Msa0707030:three_prime_UTR | 20.0% |
| !!! | TTGATTTGCACTTTATAATT+TGG | + | chr4_4:80256743-80256762 | Msa0707030:intron | 20.0% |
| !!! | ATTTGTTGTATTAACTGTTT+CGG | + | chr4_4:80256859-80256878 | Msa0707030:intron | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | - | chr4_4:80257323-80257342 | None:intergenic | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | + | chr4_4:80257400-80257419 | Msa0707030:intron | 20.0% |
| !! | AGTTATATACATAAACTTAC+TGG | + | chr4_4:80257658-80257677 | Msa0707030:three_prime_UTR | 20.0% |
| !! | GAATGGAAATTTCTTATTTC+TGG | - | chr4_4:80255813-80255832 | None:intergenic | 25.0% |
| ! | ATGTAATTAATTGAAGGTTG+TGG | - | chr4_4:80255885-80255904 | None:intergenic | 25.0% |
| ! | ATACTACTAATATATTGACG+TGG | + | chr4_4:80255947-80255966 | Msa0707030:intron | 25.0% |
| ! | TATTTACCTCACAAATTAAC+TGG | + | chr4_4:80256090-80256109 | Msa0707030:intron | 25.0% |
| !! | TAGATTAGTTATGTGTTAGT+TGG | + | chr4_4:80256212-80256231 | Msa0707030:intron | 25.0% |
| ! | AAATTCATTGCAGTAAAACT+AGG | + | chr4_4:80256383-80256402 | Msa0707030:intron | 25.0% |
| !!! | AATATTTTTGGTATGCAAGA+AGG | + | chr4_4:80256491-80256510 | Msa0707030:CDS | 25.0% |
| !! | ACTACAAAATGCAACTTTTT+GGG | - | chr4_4:80256594-80256613 | None:intergenic | 25.0% |
| ! | TAATAATTACGTACCTTGTA+CGG | - | chr4_4:80256668-80256687 | None:intergenic | 25.0% |
| ! | AGTTTGATATGTTAAAGTTG+AGG | - | chr4_4:80256824-80256843 | None:intergenic | 25.0% |
| ! | AAGATAAAAGAAGTCAATGA+AGG | + | chr4_4:80256936-80256955 | Msa0707030:CDS | 25.0% |
| ! | AGATAAAAGAAGTCAATGAA+GGG | + | chr4_4:80256937-80256956 | Msa0707030:CDS | 25.0% |
| !!! | TGATTCTGAATTTTGGTTTA+TGG | + | chr4_4:80257010-80257029 | Msa0707030:CDS | 25.0% |
| !!! | GATTCTGAATTTTGGTTTAT+GGG | + | chr4_4:80257011-80257030 | Msa0707030:CDS | 25.0% |
| !! | TTTATGTTTGAGATGTACAT+AGG | + | chr4_4:80257136-80257155 | Msa0707030:three_prime_UTR | 25.0% |
| ! | AATGATTAAGAGAAAGAGAA+TGG | + | chr4_4:80257280-80257299 | Msa0707030:intron | 25.0% |
| !! | GAATGGAAATTTCTTATTTC+TGG | - | chr4_4:80255813-80255832 | None:intergenic | 25.0% |
| ! | ATGTAATTAATTGAAGGTTG+TGG | - | chr4_4:80255885-80255904 | None:intergenic | 25.0% |
| ! | ATACTACTAATATATTGACG+TGG | + | chr4_4:80255947-80255966 | Msa0707030:intron | 25.0% |
| ! | TATTTACCTCACAAATTAAC+TGG | + | chr4_4:80256090-80256109 | Msa0707030:intron | 25.0% |
| !! | TAGATTAGTTATGTGTTAGT+TGG | + | chr4_4:80256212-80256231 | Msa0707030:intron | 25.0% |
| ! | AAATTCATTGCAGTAAAACT+AGG | + | chr4_4:80256383-80256402 | Msa0707030:intron | 25.0% |
| !!! | AATATTTTTGGTATGCAAGA+AGG | + | chr4_4:80256491-80256510 | Msa0707030:CDS | 25.0% |
| !! | ACTACAAAATGCAACTTTTT+GGG | - | chr4_4:80256594-80256613 | None:intergenic | 25.0% |
| ! | TAATAATTACGTACCTTGTA+CGG | - | chr4_4:80256668-80256687 | None:intergenic | 25.0% |
| ! | AGTTTGATATGTTAAAGTTG+AGG | - | chr4_4:80256824-80256843 | None:intergenic | 25.0% |
| ! | AAGATAAAAGAAGTCAATGA+AGG | + | chr4_4:80256936-80256955 | Msa0707030:CDS | 25.0% |
| ! | AGATAAAAGAAGTCAATGAA+GGG | + | chr4_4:80256937-80256956 | Msa0707030:CDS | 25.0% |
| !!! | TGATTCTGAATTTTGGTTTA+TGG | + | chr4_4:80257010-80257029 | Msa0707030:CDS | 25.0% |
| !!! | GATTCTGAATTTTGGTTTAT+GGG | + | chr4_4:80257011-80257030 | Msa0707030:CDS | 25.0% |
| !! | TTTATGTTTGAGATGTACAT+AGG | + | chr4_4:80257136-80257155 | Msa0707030:three_prime_UTR | 25.0% |
| ! | AATGATTAAGAGAAAGAGAA+TGG | + | chr4_4:80257280-80257299 | Msa0707030:intron | 25.0% |
| TAGAAGAATTCATCAGTGAA+TGG | - | chr4_4:80255830-80255849 | None:intergenic | 30.0% | |
| ATGAATTCTTCTACTTCTAC+AGG | + | chr4_4:80255837-80255856 | Msa0707030:CDS | 30.0% | |
| TGTGAGGTAAATATTTAGAG+AGG | - | chr4_4:80256083-80256102 | None:intergenic | 30.0% | |
| ! | CACTACAAAATGCAACTTTT+TGG | - | chr4_4:80256595-80256614 | None:intergenic | 30.0% |
| CTCATAAGCTCTATTACTAT+TGG | - | chr4_4:80256718-80256737 | None:intergenic | 30.0% | |
| ATAGTAATAGAGCTTATGAG+TGG | + | chr4_4:80256718-80256737 | Msa0707030:intron | 30.0% | |
| TGATATGTTAAAGTTGAGGT+CGG | - | chr4_4:80256820-80256839 | None:intergenic | 30.0% | |
| TATTAACTGTTTCGGTATCA+AGG | + | chr4_4:80256867-80256886 | Msa0707030:intron | 30.0% | |
| TCGGTATCAAGGATTTAATT+AGG | + | chr4_4:80256878-80256897 | Msa0707030:intron | 30.0% | |
| ! | ACTTCTTTTATCTTCCCAAT+AGG | - | chr4_4:80256930-80256949 | None:intergenic | 30.0% |
| AAATCAAACAATGTGCAGTA+GGG | - | chr4_4:80257098-80257117 | None:intergenic | 30.0% | |
| AAAATCAAACAATGTGCAGT+AGG | - | chr4_4:80257099-80257118 | None:intergenic | 30.0% | |
| AGTGTGAAGTTCTATGTAAA+TGG | + | chr4_4:80257169-80257188 | Msa0707030:three_prime_UTR | 30.0% | |
| GTGTGAAGTTCTATGTAAAT+GGG | + | chr4_4:80257170-80257189 | Msa0707030:three_prime_UTR | 30.0% | |
| !! | AAACGACACTCATTTTGAAA+CGG | - | chr4_4:80257231-80257250 | None:intergenic | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | + | chr4_4:80257232-80257251 | Msa0707030:intron | 30.0% |
| TAGAAGAATTCATCAGTGAA+TGG | - | chr4_4:80255830-80255849 | None:intergenic | 30.0% | |
| ATGAATTCTTCTACTTCTAC+AGG | + | chr4_4:80255837-80255856 | Msa0707030:CDS | 30.0% | |
| TGTGAGGTAAATATTTAGAG+AGG | - | chr4_4:80256083-80256102 | None:intergenic | 30.0% | |
| ! | CACTACAAAATGCAACTTTT+TGG | - | chr4_4:80256595-80256614 | None:intergenic | 30.0% |
| CTCATAAGCTCTATTACTAT+TGG | - | chr4_4:80256718-80256737 | None:intergenic | 30.0% | |
| ATAGTAATAGAGCTTATGAG+TGG | + | chr4_4:80256718-80256737 | Msa0707030:intron | 30.0% | |
| TGATATGTTAAAGTTGAGGT+CGG | - | chr4_4:80256820-80256839 | None:intergenic | 30.0% | |
| TATTAACTGTTTCGGTATCA+AGG | + | chr4_4:80256867-80256886 | Msa0707030:intron | 30.0% | |
| TCGGTATCAAGGATTTAATT+AGG | + | chr4_4:80256878-80256897 | Msa0707030:intron | 30.0% | |
| ! | ACTTCTTTTATCTTCCCAAT+AGG | - | chr4_4:80256930-80256949 | None:intergenic | 30.0% |
| AAATCAAACAATGTGCAGTA+GGG | - | chr4_4:80257098-80257117 | None:intergenic | 30.0% | |
| AAAATCAAACAATGTGCAGT+AGG | - | chr4_4:80257099-80257118 | None:intergenic | 30.0% | |
| AGTGTGAAGTTCTATGTAAA+TGG | + | chr4_4:80257169-80257188 | Msa0707030:three_prime_UTR | 30.0% | |
| GTGTGAAGTTCTATGTAAAT+GGG | + | chr4_4:80257170-80257189 | Msa0707030:three_prime_UTR | 30.0% | |
| !! | AAACGACACTCATTTTGAAA+CGG | - | chr4_4:80257231-80257250 | None:intergenic | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | + | chr4_4:80257232-80257251 | Msa0707030:intron | 30.0% |
| TTTAGCAGTTGCAGTTTCTT+TGG | - | chr4_4:80255988-80256007 | None:intergenic | 35.0% | |
| AGAAACTGCAACTGCTAAAA+TGG | + | chr4_4:80255989-80256008 | Msa0707030:CDS | 35.0% | |
| ! | AAACCAGAAGTTTTGCATGT+AGG | + | chr4_4:80256036-80256055 | Msa0707030:CDS | 35.0% |
| AATCCTACATGCAAAACTTC+TGG | - | chr4_4:80256042-80256061 | None:intergenic | 35.0% | |
| ! | TATGTGTTAGTTGGTCTACT+TGG | + | chr4_4:80256221-80256240 | Msa0707030:intron | 35.0% |
| TTCAGAGTCTCTGATAGTTT+AGG | - | chr4_4:80256410-80256429 | None:intergenic | 35.0% | |
| TAAACTATCAGAGACTCTGA+AGG | + | chr4_4:80256409-80256428 | Msa0707030:CDS | 35.0% | |
| AAACTATCAGAGACTCTGAA+GGG | + | chr4_4:80256410-80256429 | Msa0707030:CDS | 35.0% | |
| CAAGGATAATACAAGAAGGT+GGG | + | chr4_4:80256450-80256469 | Msa0707030:CDS | 35.0% | |
| ! | TGTTACTTATACACAACAGC+TGG | + | chr4_4:80256539-80256558 | Msa0707030:CDS | 35.0% |
| ATGAAAAGAACTCCAGCAAT+AGG | - | chr4_4:80256566-80256585 | None:intergenic | 35.0% | |
| !! | ACAAAATGCAACTTTTTGGG+TGG | - | chr4_4:80256591-80256610 | None:intergenic | 35.0% |
| ! | TTAGGTGCATTTTACTATGC+AGG | + | chr4_4:80256896-80256915 | Msa0707030:intron | 35.0% |
| !! | ATGCAGGTTTTGATACCTAT+TGG | + | chr4_4:80256912-80256931 | Msa0707030:intron | 35.0% |
| !! | TGCAGGTTTTGATACCTATT+GGG | + | chr4_4:80256913-80256932 | Msa0707030:intron | 35.0% |
| ! | CTCACGATGATTCTGAATTT+TGG | + | chr4_4:80257003-80257022 | Msa0707030:CDS | 35.0% |
| ! | TACGCTATGAGAAAGCTTTT+AGG | + | chr4_4:80257039-80257058 | Msa0707030:CDS | 35.0% |
| ! | GTAGTGTGCAGAGTATTAAT+TGG | + | chr4_4:80257362-80257381 | Msa0707030:intron | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | + | chr4_4:80257366-80257385 | Msa0707030:intron | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr4_4:80257466-80257485 | Msa0707030:intron | 35.0% |
| ATAATCACCATGGAAAGTGA+AGG | - | chr4_4:80257546-80257565 | None:intergenic | 35.0% | |
| TCTTGTGTTCATAATCACCA+TGG | - | chr4_4:80257556-80257575 | None:intergenic | 35.0% | |
| TTTAGCAGTTGCAGTTTCTT+TGG | - | chr4_4:80255988-80256007 | None:intergenic | 35.0% | |
| AGAAACTGCAACTGCTAAAA+TGG | + | chr4_4:80255989-80256008 | Msa0707030:CDS | 35.0% | |
| ! | AAACCAGAAGTTTTGCATGT+AGG | + | chr4_4:80256036-80256055 | Msa0707030:CDS | 35.0% |
| AATCCTACATGCAAAACTTC+TGG | - | chr4_4:80256042-80256061 | None:intergenic | 35.0% | |
| ! | TATGTGTTAGTTGGTCTACT+TGG | + | chr4_4:80256221-80256240 | Msa0707030:intron | 35.0% |
| TTCAGAGTCTCTGATAGTTT+AGG | - | chr4_4:80256410-80256429 | None:intergenic | 35.0% | |
| TAAACTATCAGAGACTCTGA+AGG | + | chr4_4:80256409-80256428 | Msa0707030:CDS | 35.0% | |
| AAACTATCAGAGACTCTGAA+GGG | + | chr4_4:80256410-80256429 | Msa0707030:CDS | 35.0% | |
| CAAGGATAATACAAGAAGGT+GGG | + | chr4_4:80256450-80256469 | Msa0707030:CDS | 35.0% | |
| ! | TGTTACTTATACACAACAGC+TGG | + | chr4_4:80256539-80256558 | Msa0707030:CDS | 35.0% |
| ATGAAAAGAACTCCAGCAAT+AGG | - | chr4_4:80256566-80256585 | None:intergenic | 35.0% | |
| !! | ACAAAATGCAACTTTTTGGG+TGG | - | chr4_4:80256591-80256610 | None:intergenic | 35.0% |
| ! | TTAGGTGCATTTTACTATGC+AGG | + | chr4_4:80256896-80256915 | Msa0707030:intron | 35.0% |
| !! | ATGCAGGTTTTGATACCTAT+TGG | + | chr4_4:80256912-80256931 | Msa0707030:intron | 35.0% |
| !! | TGCAGGTTTTGATACCTATT+GGG | + | chr4_4:80256913-80256932 | Msa0707030:intron | 35.0% |
| ! | CTCACGATGATTCTGAATTT+TGG | + | chr4_4:80257003-80257022 | Msa0707030:CDS | 35.0% |
| ! | TACGCTATGAGAAAGCTTTT+AGG | + | chr4_4:80257039-80257058 | Msa0707030:CDS | 35.0% |
| ! | GTAGTGTGCAGAGTATTAAT+TGG | + | chr4_4:80257362-80257381 | Msa0707030:intron | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | + | chr4_4:80257366-80257385 | Msa0707030:intron | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr4_4:80257466-80257485 | Msa0707030:intron | 35.0% |
| ATAATCACCATGGAAAGTGA+AGG | - | chr4_4:80257546-80257565 | None:intergenic | 35.0% | |
| TCTTGTGTTCATAATCACCA+TGG | - | chr4_4:80257556-80257575 | None:intergenic | 35.0% | |
| !!! | TGCAAAACTTCTGGTTTTCC+TGG | - | chr4_4:80256033-80256052 | None:intergenic | 40.0% |
| GCATGTAGGATTCATGAACA+TGG | + | chr4_4:80256050-80256069 | Msa0707030:CDS | 40.0% | |
| !! | CAGTAGCCAGTTAATTTGTG+AGG | - | chr4_4:80256099-80256118 | None:intergenic | 40.0% |
| ! | TCTGAAGGGTAAGTTGAGTT+TGG | + | chr4_4:80256424-80256443 | Msa0707030:CDS | 40.0% |
| ! | CTGAAGGGTAAGTTGAGTTT+GGG | + | chr4_4:80256425-80256444 | Msa0707030:CDS | 40.0% |
| GGTGCAAGGATAATACAAGA+AGG | + | chr4_4:80256446-80256465 | Msa0707030:CDS | 40.0% | |
| GCAAGGATAATACAAGAAGG+TGG | + | chr4_4:80256449-80256468 | Msa0707030:CDS | 40.0% | |
| ATAATACAAGAAGGTGGGAG+AGG | + | chr4_4:80256455-80256474 | Msa0707030:CDS | 40.0% | |
| TAATACAAGAAGGTGGGAGA+GGG | + | chr4_4:80256456-80256475 | Msa0707030:CDS | 40.0% | |
| !! | AGAAGGAGAGAAAGTGTTGA+AGG | + | chr4_4:80256508-80256527 | Msa0707030:CDS | 40.0% |
| GATGCAGAAGAGAAGGTTAT+TGG | - | chr4_4:80256623-80256642 | None:intergenic | 40.0% | |
| AACCTTCTCTTCTGCATCAA+CGG | + | chr4_4:80256625-80256644 | Msa0707030:CDS | 40.0% | |
| GGGCTAAATGGACATTGAAA+TGG | - | chr4_4:80257078-80257097 | None:intergenic | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr4_4:80257470-80257489 | None:intergenic | 40.0% |
| ! | GTGTGCAGAGTATTAATTGG+AGG | + | chr4_4:80257365-80257384 | Msa0707030:intron | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr4_4:80257470-80257489 | Msa0707030:intron | 40.0% |
| CTTCATTCCTTCACTTTCCA+TGG | + | chr4_4:80257536-80257555 | Msa0707030:three_prime_UTR | 40.0% | |
| !!! | TGCAAAACTTCTGGTTTTCC+TGG | - | chr4_4:80256033-80256052 | None:intergenic | 40.0% |
| GCATGTAGGATTCATGAACA+TGG | + | chr4_4:80256050-80256069 | Msa0707030:CDS | 40.0% | |
| !! | CAGTAGCCAGTTAATTTGTG+AGG | - | chr4_4:80256099-80256118 | None:intergenic | 40.0% |
| ! | TCTGAAGGGTAAGTTGAGTT+TGG | + | chr4_4:80256424-80256443 | Msa0707030:CDS | 40.0% |
| ! | CTGAAGGGTAAGTTGAGTTT+GGG | + | chr4_4:80256425-80256444 | Msa0707030:CDS | 40.0% |
| GGTGCAAGGATAATACAAGA+AGG | + | chr4_4:80256446-80256465 | Msa0707030:CDS | 40.0% | |
| GCAAGGATAATACAAGAAGG+TGG | + | chr4_4:80256449-80256468 | Msa0707030:CDS | 40.0% | |
| ATAATACAAGAAGGTGGGAG+AGG | + | chr4_4:80256455-80256474 | Msa0707030:CDS | 40.0% | |
| TAATACAAGAAGGTGGGAGA+GGG | + | chr4_4:80256456-80256475 | Msa0707030:CDS | 40.0% | |
| !! | AGAAGGAGAGAAAGTGTTGA+AGG | + | chr4_4:80256508-80256527 | Msa0707030:CDS | 40.0% |
| GATGCAGAAGAGAAGGTTAT+TGG | - | chr4_4:80256623-80256642 | None:intergenic | 40.0% | |
| AACCTTCTCTTCTGCATCAA+CGG | + | chr4_4:80256625-80256644 | Msa0707030:CDS | 40.0% | |
| GGGCTAAATGGACATTGAAA+TGG | - | chr4_4:80257078-80257097 | None:intergenic | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr4_4:80257470-80257489 | None:intergenic | 40.0% |
| ! | GTGTGCAGAGTATTAATTGG+AGG | + | chr4_4:80257365-80257384 | Msa0707030:intron | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr4_4:80257470-80257489 | Msa0707030:intron | 40.0% |
| CTTCATTCCTTCACTTTCCA+TGG | + | chr4_4:80257536-80257555 | Msa0707030:three_prime_UTR | 40.0% | |
| AGCACAAGAAAGCAACAACC+AGG | + | chr4_4:80256012-80256031 | Msa0707030:CDS | 45.0% | |
| ! | GTAAGTTGAGTTTGGGTGCA+AGG | + | chr4_4:80256432-80256451 | Msa0707030:CDS | 45.0% |
| ACCTTCTCTTCTGCATCAAC+GGG | + | chr4_4:80256626-80256645 | Msa0707030:CDS | 45.0% | |
| TGAAGGGCAGAATGTGAATC+AGG | + | chr4_4:80256953-80256972 | Msa0707030:CDS | 45.0% | |
| CAATGTGCAGTAGGGCTAAA+TGG | - | chr4_4:80257090-80257109 | None:intergenic | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr4_4:80257469-80257488 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr4_4:80257469-80257488 | Msa0707030:intron | 45.0% |
| AGCACAAGAAAGCAACAACC+AGG | + | chr4_4:80256012-80256031 | Msa0707030:CDS | 45.0% | |
| ! | GTAAGTTGAGTTTGGGTGCA+AGG | + | chr4_4:80256432-80256451 | Msa0707030:CDS | 45.0% |
| ACCTTCTCTTCTGCATCAAC+GGG | + | chr4_4:80256626-80256645 | Msa0707030:CDS | 45.0% | |
| TGAAGGGCAGAATGTGAATC+AGG | + | chr4_4:80256953-80256972 | Msa0707030:CDS | 45.0% | |
| CAATGTGCAGTAGGGCTAAA+TGG | - | chr4_4:80257090-80257109 | None:intergenic | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr4_4:80257469-80257488 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr4_4:80257469-80257488 | Msa0707030:intron | 45.0% |
| !!! | TAATAATCAATATTTTTTTT+AGG | + | chr4_4:80256283-80256302 | Msa0707030:intron | 5.0% |
| !!! | AATAATCAATATTTTTTTTA+GGG | + | chr4_4:80256284-80256303 | Msa0707030:intron | 5.0% |
| !!! | TAATAATCAATATTTTTTTT+AGG | + | chr4_4:80256283-80256302 | Msa0707030:intron | 5.0% |
| !!! | AATAATCAATATTTTTTTTA+GGG | + | chr4_4:80256284-80256303 | Msa0707030:intron | 5.0% |
| ACAACAGCTGGTCCTATTGC+TGG | + | chr4_4:80256551-80256570 | Msa0707030:CDS | 50.0% | |
| TCCCGTTGATGCAGAAGAGA+AGG | - | chr4_4:80256630-80256649 | None:intergenic | 50.0% | |
| ACAACAGCTGGTCCTATTGC+TGG | + | chr4_4:80256551-80256570 | Msa0707030:CDS | 50.0% | |
| TCCCGTTGATGCAGAAGAGA+AGG | - | chr4_4:80256630-80256649 | None:intergenic | 50.0% | |
| GACGCGCAAGATACCGTACA+AGG | + | chr4_4:80256652-80256671 | Msa0707030:CDS | 55.0% | |
| GACGCGCAAGATACCGTACA+AGG | + | chr4_4:80256652-80256671 | Msa0707030:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 80255769 | 80257685 | 80255769 | ID=Msa0707030;Name=Msa0707030 |
| chr4_4 | mRNA | 80255769 | 80257685 | 80255769 | ID=Msa0707030-mRNA-1;Parent=Msa0707030;Name=Msa0707030-mRNA-1;_AED=0.07;_eAED=0.07;_QI=68|1|1|1|0.75|0.6|5|319|187 |
| chr4_4 | exon | 80255769 | 80255858 | 80255769 | ID=Msa0707030-mRNA-1:exon:25996;Parent=Msa0707030-mRNA-1 |
| chr4_4 | exon | 80255985 | 80256071 | 80255985 | ID=Msa0707030-mRNA-1:exon:25997;Parent=Msa0707030-mRNA-1 |
| chr4_4 | exon | 80256396 | 80256673 | 80256396 | ID=Msa0707030-mRNA-1:exon:25998;Parent=Msa0707030-mRNA-1 |
| chr4_4 | exon | 80256918 | 80257218 | 80256918 | ID=Msa0707030-mRNA-1:exon:25999;Parent=Msa0707030-mRNA-1 |
| chr4_4 | exon | 80257491 | 80257685 | 80257491 | ID=Msa0707030-mRNA-1:exon:26000;Parent=Msa0707030-mRNA-1 |
| chr4_4 | five_prime_UTR | 80255769 | 80255836 | 80255769 | ID=Msa0707030-mRNA-1:five_prime_utr;Parent=Msa0707030-mRNA-1 |
| chr4_4 | CDS | 80255837 | 80255858 | 80255837 | ID=Msa0707030-mRNA-1:cds;Parent=Msa0707030-mRNA-1 |
| chr4_4 | CDS | 80255985 | 80256071 | 80255985 | ID=Msa0707030-mRNA-1:cds;Parent=Msa0707030-mRNA-1 |
| chr4_4 | CDS | 80256396 | 80256673 | 80256396 | ID=Msa0707030-mRNA-1:cds;Parent=Msa0707030-mRNA-1 |
| chr4_4 | CDS | 80256918 | 80257094 | 80256918 | ID=Msa0707030-mRNA-1:cds;Parent=Msa0707030-mRNA-1 |
| chr4_4 | three_prime_UTR | 80257095 | 80257218 | 80257095 | ID=Msa0707030-mRNA-1:three_prime_utr;Parent=Msa0707030-mRNA-1 |
| chr4_4 | three_prime_UTR | 80257491 | 80257685 | 80257491 | ID=Msa0707030-mRNA-1:three_prime_utr;Parent=Msa0707030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
