Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707430 | XP_003630667.2 | 99.550 | 222 | 1 | 0 | 1 | 222 | 1 | 222 | 1.99e-156 | 442 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707430 | sp|O82197|VP321_ARATH | 77.027 | 222 | 38 | 7 | 5 | 222 | 1 | 213 | 6.36e-97 | 284 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707430 | G7LJN0 | 99.550 | 222 | 1 | 0 | 1 | 222 | 1 | 222 | 9.50e-157 | 442 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0101020 | Msa0707430 | 0.808929 | 2.432366e-50 | -8.615850e-47 |
| Msa0638990 | Msa0707430 | 0.807503 | 4.895812e-50 | -8.615850e-47 |
| Msa0707030 | Msa0707430 | 0.808110 | 3.637227e-50 | -8.615850e-47 |
| Msa0707430 | Msa0721340 | 0.843511 | 1.339495e-58 | -8.615850e-47 |
| Msa0707430 | Msa0776750 | 0.809948 | 1.470100e-50 | -8.615850e-47 |
| Msa0707430 | Msa0877710 | 0.838381 | 2.973915e-57 | -8.615850e-47 |
| Msa0707430 | Msa1036910 | 0.806152 | 9.450435e-50 | -8.615850e-47 |
| Msa0707430 | Msa1077340 | 0.834973 | 2.198151e-56 | -8.615850e-47 |
| Msa0707430 | Msa1115280 | 0.845362 | 4.259191e-59 | -8.615850e-47 |
| Msa0707430 | Msa1143020 | 0.801707 | 7.928907e-49 | -8.615850e-47 |
| Msa0707430 | Msa1164020 | 0.824997 | 5.958835e-54 | -8.615850e-47 |
| Msa0707430 | Msa1177780 | 0.803573 | 3.269074e-49 | -8.615850e-47 |
| Msa0707430 | Msa1332050 | 0.815385 | 9.500651e-52 | -8.615850e-47 |
| Msa0707430 | Msa1359320 | 0.832899 | 7.265797e-56 | -8.615850e-47 |
| Msa0707430 | Msa1400050 | 0.820685 | 6.019525e-53 | -8.615850e-47 |
| Msa0145110 | Msa0707430 | 0.800911 | 1.153906e-48 | -8.615850e-47 |
| Msa0175050 | Msa0707430 | 0.809341 | 1.984911e-50 | -8.615850e-47 |
| Msa0190950 | Msa0707430 | 0.847510 | 1.104587e-59 | -8.615850e-47 |
| Msa0200650 | Msa0707430 | 0.809374 | 1.953309e-50 | -8.615850e-47 |
| Msa0202930 | Msa0707430 | 0.825871 | 3.700114e-54 | -8.615850e-47 |
| Msa0233270 | Msa0707430 | 0.816379 | 5.700364e-52 | -8.615850e-47 |
| Msa0236070 | Msa0707430 | 0.812142 | 4.920746e-51 | -8.615850e-47 |
| Msa0422180 | Msa0707430 | 0.802847 | 4.619225e-49 | -8.615850e-47 |
| Msa0284450 | Msa0707430 | 0.828866 | 7.083535e-55 | -8.615850e-47 |
| Msa0311470 | Msa0707430 | 0.817022 | 4.091286e-52 | -8.615850e-47 |
| Msa0514610 | Msa0707430 | 0.811309 | 7.465699e-51 | -8.615850e-47 |
| Msa0538160 | Msa0707430 | 0.807256 | 5.524541e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707430 | MtrunA17_Chr8g0389481 | 99.550 | 222 | 1 | 0 | 1 | 222 | 1 | 222 | 1.83e-160 | 442 |
| Msa0707430 | MtrunA17_Chr6g0487521 | 81.364 | 220 | 39 | 2 | 5 | 222 | 1 | 220 | 8.43e-106 | 304 |
| Msa0707430 | MtrunA17_Chr8g0389471 | 74.554 | 224 | 52 | 4 | 1 | 222 | 1 | 221 | 4.13e-89 | 261 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707430 | AT2G19830.2 | 77.027 | 222 | 38 | 7 | 5 | 222 | 1 | 213 | 6.47e-98 | 284 |
| Msa0707430 | AT4G29160.1 | 77.828 | 221 | 44 | 4 | 5 | 222 | 1 | 219 | 8.00e-93 | 271 |
| Msa0707430 | AT4G29160.3 | 77.828 | 221 | 44 | 4 | 5 | 222 | 1 | 219 | 8.00e-93 | 271 |
| Msa0707430 | AT2G19830.1 | 79.293 | 198 | 31 | 5 | 28 | 222 | 4 | 194 | 6.74e-90 | 263 |
| Msa0707430 | AT4G29160.2 | 80.000 | 180 | 33 | 3 | 46 | 222 | 13 | 192 | 9.81e-83 | 244 |
Find 105 sgRNAs with CRISPR-Local
Find 287 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCAATCAACGGTCGAATT+TGG | 0.096103 | 4_4:+80672497 | None:intergenic |
| GGTTGAGCACCGGGCGGTTT+TGG | 0.100162 | 4_4:-80672567 | Msa0707430:three_prime_UTR |
| ATAGTTGGTTCTCTGATATT+AGG | 0.162813 | 4_4:-80672589 | Msa0707430:three_prime_UTR |
| ACGAACCCTGGTGAGAAATT+AGG | 0.197502 | 4_4:+80676673 | None:intergenic |
| TCACAAGAGCCAAGAATAAA+AGG | 0.227877 | 4_4:-80676056 | Msa0707430:CDS |
| GTCGAATTTGGGTCTCAATT+TGG | 0.246596 | 4_4:+80672509 | None:intergenic |
| ACTTGGAATGCTAGAGAAAA+AGG | 0.296376 | 4_4:-80676130 | Msa0707430:CDS |
| CGGGTGGATTGGATCGGTTA+TGG | 0.299578 | 4_4:-80672436 | Msa0707430:three_prime_UTR |
| GGAGAGCGTGCTTCTTAAAA+AGG | 0.301195 | 4_4:-80676109 | Msa0707430:CDS |
| GGGACATGCACAGAGGCTTC+TGG | 0.308869 | 4_4:+80673218 | None:intergenic |
| GGATTCTGTTGCAGGGAGAC+TGG | 0.311823 | 4_4:-80676598 | Msa0707430:intron |
| TCCAATCAACGGTCGAATTT+GGG | 0.312130 | 4_4:+80672498 | None:intergenic |
| CGAACCCTGGTGAGAAATTA+GGG | 0.313711 | 4_4:+80676674 | None:intergenic |
| ACCGTTGATTGGATCGGTTT+TGG | 0.314869 | 4_4:-80672488 | Msa0707430:three_prime_UTR |
| TAGTTGGTTCTCTGATATTA+GGG | 0.329645 | 4_4:-80672588 | Msa0707430:three_prime_UTR |
| GATTTGTCCGTCGGTTTGTC+CGG | 0.349061 | 4_4:-80672456 | Msa0707430:three_prime_UTR |
| GGGTGGATTGGATCGGTTAT+GGG | 0.351150 | 4_4:-80672435 | Msa0707430:three_prime_UTR |
| TGAGAACATGAAACAGATTC+AGG | 0.382236 | 4_4:-80673496 | Msa0707430:CDS |
| AAATTAGGGTTTGGAATAAG+AGG | 0.383107 | 4_4:+80676688 | None:intergenic |
| ACCCAAATTCGACCGTTGAT+TGG | 0.385633 | 4_4:-80672499 | Msa0707430:three_prime_UTR |
| TGTGGGCCGCGCTTAGTAGA+AGG | 0.389765 | 4_4:-80676855 | Msa0707430:five_prime_UTR |
| GGGTGCTTGCTTCTTCTCTC+TGG | 0.390371 | 4_4:-80672304 | Msa0707430:three_prime_UTR |
| GCCCACTCCTGAGGAAGAAT+TGG | 0.390463 | 4_4:-80673162 | Msa0707430:CDS |
| GCTTCTGGAGTTGTAATTGC+AGG | 0.391518 | 4_4:+80673233 | None:intergenic |
| GGACGAGTAGGCCGCCTAGC+TGG | 0.394730 | 4_4:+80673197 | None:intergenic |
| TACGGGGCATACATAAGAAT+TGG | 0.406525 | 4_4:-80672817 | Msa0707430:three_prime_UTR |
| TACTGTTTCTGTGGTTGCCT+TGG | 0.415099 | 4_4:+80673958 | None:intergenic |
| CCAGTTGCGTATTCATGATC+AGG | 0.417336 | 4_4:-80675234 | Msa0707430:intron |
| GTCGGTTTGTCCGGGTGGAT+TGG | 0.417799 | 4_4:-80672447 | Msa0707430:three_prime_UTR |
| AGCTAGGCGGCCTACTCGTC+CGG | 0.432309 | 4_4:-80673195 | Msa0707430:CDS |
| GCTGAGATGGCGCTTTGAGC+AGG | 0.432581 | 4_4:-80673128 | Msa0707430:intron |
| CCAAACCCTAATTTCTCACC+AGG | 0.441030 | 4_4:-80676679 | Msa0707430:five_prime_UTR |
| GAATTATTGTCCGCTCCAAT+TGG | 0.445452 | 4_4:-80673474 | Msa0707430:CDS |
| TTCTAAAGTTGATAGAGTAT+TGG | 0.445759 | 4_4:+80676497 | None:intergenic |
| CACAAGAGCCAAGAATAAAA+GGG | 0.447210 | 4_4:-80676055 | Msa0707430:CDS |
| AAATCAGCAGCTGCACCAAT+TGG | 0.448641 | 4_4:+80673459 | None:intergenic |
| CCTGGTGAGAAATTAGGGTT+TGG | 0.450323 | 4_4:+80676679 | None:intergenic |
| GGCAGCTTTGCAAGCTGAGA+TGG | 0.454546 | 4_4:-80673141 | Msa0707430:CDS |
| CTGATATTAGGGTTGAGCAC+CGG | 0.455414 | 4_4:-80672577 | Msa0707430:three_prime_UTR |
| ACAGTAGCCGCATTGAGAAC+TGG | 0.461367 | 4_4:-80673941 | Msa0707430:CDS |
| ATTTGTCCGTCGGTTTGTCC+GGG | 0.463081 | 4_4:-80672455 | Msa0707430:three_prime_UTR |
| TGGTTAGGTCAGAATTTAGC+AGG | 0.466064 | 4_4:-80672858 | Msa0707430:intron |
| AGAGCTAGAGGGTGCTGAGT+TGG | 0.470621 | 4_4:-80673273 | Msa0707430:CDS |
| GCCAATTCTTCCTCAGGAGT+GGG | 0.471301 | 4_4:+80673161 | None:intergenic |
| AAAGCTGCCAATTCTTCCTC+AGG | 0.474769 | 4_4:+80673155 | None:intergenic |
| TGATATTAGGGTTGAGCACC+GGG | 0.478950 | 4_4:-80672576 | Msa0707430:three_prime_UTR |
| GGCTGCAGCTGAAGTTGAAA+GGG | 0.480403 | 4_4:-80676088 | Msa0707430:CDS |
| GATTCTGTTGCAGGGAGACT+GGG | 0.481277 | 4_4:-80676597 | Msa0707430:intron |
| AACGTTGCGAGTAGCATAGT+TGG | 0.484038 | 4_4:-80672604 | Msa0707430:three_prime_UTR |
| CGGCGATACAATGTTTGAAA+AGG | 0.488220 | 4_4:-80675298 | Msa0707430:CDS |
| CCTGATCATGAATACGCAAC+TGG | 0.506321 | 4_4:+80675234 | None:intergenic |
| AGGCTGCAGCTGAAGTTGAA+AGG | 0.506350 | 4_4:-80676089 | Msa0707430:CDS |
| GACGAGTAGGCCGCCTAGCT+GGG | 0.521270 | 4_4:+80673198 | None:intergenic |
| CGGATTTCGGATTTGTCCGT+CGG | 0.523016 | 4_4:-80672465 | Msa0707430:three_prime_UTR |
| TACAATGTTTGAAAAGGAAG+AGG | 0.525703 | 4_4:-80675292 | Msa0707430:CDS |
| AGTAGAGAAATAGAAAGAAG+AGG | 0.526767 | 4_4:-80672392 | Msa0707430:three_prime_UTR |
| ATTGATGATGAGAATGATAC+GGG | 0.531507 | 4_4:-80672834 | Msa0707430:three_prime_UTR |
| GTGGGCCGCGCTTAGTAGAA+GGG | 0.538800 | 4_4:-80676854 | Msa0707430:five_prime_UTR |
| CATTGATGATGAGAATGATA+CGG | 0.539696 | 4_4:-80672835 | Msa0707430:three_prime_UTR |
| TTTGTCCGGGTGGATTGGAT+CGG | 0.540680 | 4_4:-80672442 | Msa0707430:three_prime_UTR |
| CCTCTGTGCATGTCCCAGCT+AGG | 0.540963 | 4_4:-80673211 | Msa0707430:CDS |
| AAGATAAAAGCGACTGTGAG+AGG | 0.541206 | 4_4:+80672771 | None:intergenic |
| GCGTGCAAGTGCAAATGCGA+TGG | 0.547146 | 4_4:+80676770 | None:intergenic |
| GGCAGAATTCTCCATGTCAC+TGG | 0.548290 | 4_4:+80672792 | None:intergenic |
| CTGTTCGTTAATCTCATCCA+TGG | 0.550173 | 4_4:+80673521 | None:intergenic |
| TGCCAATTCTTCCTCAGGAG+TGG | 0.551831 | 4_4:+80673160 | None:intergenic |
| TTTGTATGCACCGGACGAGT+AGG | 0.560328 | 4_4:+80673185 | None:intergenic |
| AATTCGACCGTTGATTGGAT+CGG | 0.564339 | 4_4:-80672494 | Msa0707430:three_prime_UTR |
| GCTTGAATTATGTAGACACT+TGG | 0.569639 | 4_4:-80676147 | Msa0707430:intron |
| TGTGTTACAGATGATAATGC+TGG | 0.571958 | 4_4:-80673987 | Msa0707430:intron |
| GCCTTCAGTTTCATCTACTG+TGG | 0.572704 | 4_4:+80672533 | None:intergenic |
| GAAAGAAGAGGTGAATGACT+TGG | 0.574360 | 4_4:-80672380 | Msa0707430:three_prime_UTR |
| TGTCCGTCGGTTTGTCCGGG+TGG | 0.579618 | 4_4:-80672452 | Msa0707430:three_prime_UTR |
| CAATGCGGCTACTGTTTCTG+TGG | 0.580774 | 4_4:+80673949 | None:intergenic |
| AGCAGAACTTGAAGAGCTAG+AGG | 0.585998 | 4_4:-80673285 | Msa0707430:CDS |
| GATAATGCTGGAAGGTGCCA+AGG | 0.586807 | 4_4:-80673975 | Msa0707430:CDS |
| TCTACTAAGCGCGGCCCACA+CGG | 0.590563 | 4_4:+80676858 | None:intergenic |
| GAACAGCAAGTAGAGCAGCT+TGG | 0.594879 | 4_4:-80675263 | Msa0707430:CDS |
| GGAGTGGGCTTTGTATGCAC+CGG | 0.596065 | 4_4:+80673176 | None:intergenic |
| TTTGTGAAATTATTGAACAG+AGG | 0.605498 | 4_4:-80672750 | Msa0707430:three_prime_UTR |
| AAGAATTGGAACCAGTGACA+TGG | 0.617295 | 4_4:-80672803 | Msa0707430:three_prime_UTR |
| CGTGCAAGTGCAAATGCGAT+GGG | 0.619756 | 4_4:+80676771 | None:intergenic |
| TAATGATGTTGATGCGACCA+TGG | 0.625933 | 4_4:-80673538 | Msa0707430:CDS |
| AAACGAAATAGAGAAAGCGA+AGG | 0.628174 | 4_4:+80676813 | None:intergenic |
| GCCAAAACCGATCCAATCAA+CGG | 0.631412 | 4_4:+80672487 | None:intergenic |
| ACAAGAGCCAAGAATAAAAG+GGG | 0.640430 | 4_4:-80676054 | Msa0707430:intron |
| AGCAGCTGCACCAATTGGAG+CGG | 0.641867 | 4_4:+80673464 | None:intergenic |
| GCAGAACTTGAAGAGCTAGA+GGG | 0.644080 | 4_4:-80673284 | Msa0707430:CDS |
| CATAACCGATCCAATCCACC+CGG | 0.644587 | 4_4:+80672437 | None:intergenic |
| CGAAACAAACTAATCCGTGT+GGG | 0.652795 | 4_4:-80676872 | Msa0707430:five_prime_UTR |
| GCATACAAAGCCCACTCCTG+AGG | 0.653225 | 4_4:-80673171 | Msa0707430:CDS |
| CAAACCCTAATTTCTCACCA+GGG | 0.653246 | 4_4:-80676678 | Msa0707430:intron |
| ATCTACCAAGGTGACAACAA+AGG | 0.654532 | 4_4:+80672689 | None:intergenic |
| AATCCACCCGGACAAACCGA+CGG | 0.658253 | 4_4:+80672449 | None:intergenic |
| AGCCGCATTGAGAACTGGAG+CGG | 0.658271 | 4_4:-80673936 | Msa0707430:CDS |
| CTGTGCATGTCCCAGCTAGG+CGG | 0.671027 | 4_4:-80673208 | Msa0707430:CDS |
| ACGAAACAAACTAATCCGTG+TGG | 0.671909 | 4_4:-80676873 | Msa0707430:five_prime_UTR |
| CCTAGCTGGGACATGCACAG+AGG | 0.679296 | 4_4:+80673211 | None:intergenic |
| TTCCTCCCTTCTACTAAGCG+CGG | 0.684267 | 4_4:+80676849 | None:intergenic |
| GCCACAGTAGATGAAACTGA+AGG | 0.693429 | 4_4:-80672534 | Msa0707430:three_prime_UTR |
| GGCCGCGCTTAGTAGAAGGG+AGG | 0.698237 | 4_4:-80676851 | Msa0707430:five_prime_UTR |
| TATTAGGGTTGAGCACCGGG+CGG | 0.725281 | 4_4:-80672573 | Msa0707430:three_prime_UTR |
| TTACAGATGATAATGCTGGA+AGG | 0.735879 | 4_4:-80673983 | Msa0707430:intron |
| AGCCGCTCCAGTTCTCAATG+CGG | 0.737111 | 4_4:+80673934 | None:intergenic |
| TTGATGATGAGAATGATACG+GGG | 0.784907 | 4_4:-80672833 | Msa0707430:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTATTATATTATTTAA+AGG | - | chr4_4:80674878-80674897 | Msa0707430:intron | 0.0% |
| !!! | TATTATTTATAAGTTTGTTA+AGG | + | chr4_4:80674260-80674279 | None:intergenic | 10.0% |
| !! | TATAATTATATATCATTACT+AGG | + | chr4_4:80674581-80674600 | None:intergenic | 10.0% |
| !! | GTAAACAAATATTATATTTA+CGG | - | chr4_4:80674606-80674625 | Msa0707430:intron | 10.0% |
| !! | TAAACAAATATTATATTTAC+GGG | - | chr4_4:80674607-80674626 | Msa0707430:intron | 10.0% |
| !! | AAACATGTATAAATAAATAA+AGG | - | chr4_4:80674640-80674659 | Msa0707430:intron | 10.0% |
| !! | ATTATGAAATTGTGATAAAA+AGG | + | chr4_4:80672484-80672503 | None:intergenic | 15.0% |
| !!! | GTTTATATTATATTGCTATT+CGG | - | chr4_4:80672751-80672770 | Msa0707430:three_prime_UTR | 15.0% |
| !!! | TTTGTTTCCATATATTATTT+TGG | - | chr4_4:80673144-80673163 | Msa0707430:CDS | 15.0% |
| !! | AAAACTTATCTATAGAAATT+TGG | + | chr4_4:80673651-80673670 | None:intergenic | 15.0% |
| !! | GTAATAAATCAATTGAATTA+TGG | + | chr4_4:80674685-80674704 | None:intergenic | 15.0% |
| !!! | CATATTGATTCTAAATAAAT+TGG | - | chr4_4:80674841-80674860 | Msa0707430:intron | 15.0% |
| !!! | TTGCAATATTATATTTTTTC+AGG | - | chr4_4:80675545-80675564 | Msa0707430:intron | 15.0% |
| !! | TACTTATTATGTGAAATATT+CGG | - | chr4_4:80675763-80675782 | Msa0707430:intron | 15.0% |
| !!! | CATTAATATGTTTTTATGAT+TGG | - | chr4_4:80676050-80676069 | Msa0707430:intron | 15.0% |
| !! | CAATTTCATAATTCTCATAT+TGG | - | chr4_4:80672492-80672511 | Msa0707430:three_prime_UTR | 20.0% |
| !!! | AACTTTAGAAAAATTAAGTG+AGG | - | chr4_4:80672627-80672646 | Msa0707430:three_prime_UTR | 20.0% |
| !!! | ACTGTTTTAAAGAATATAAG+TGG | - | chr4_4:80673101-80673120 | Msa0707430:intron | 20.0% |
| !!! | CTGTTTTAAAGAATATAAGT+GGG | - | chr4_4:80673102-80673121 | Msa0707430:intron | 20.0% |
| !! | ATAATATATGGAAACAAACA+GGG | + | chr4_4:80673142-80673161 | None:intergenic | 20.0% |
| !! | AATAATATATGGAAACAAAC+AGG | + | chr4_4:80673143-80673162 | None:intergenic | 20.0% |
| !! | AAGTTCTCCAAAATAATATA+TGG | + | chr4_4:80673154-80673173 | None:intergenic | 20.0% |
| !!! | TAATAATGGATTTCTAAAGA+GGG | + | chr4_4:80673720-80673739 | None:intergenic | 20.0% |
| !!! | ACATTCATTATTTTCAAAAG+TGG | - | chr4_4:80673949-80673968 | Msa0707430:CDS | 20.0% |
| !! | ATCTACGTTAATATACAAAA+TGG | + | chr4_4:80674063-80674082 | None:intergenic | 20.0% |
| !! | TTGTATATTAACGTAGATAT+AGG | - | chr4_4:80674065-80674084 | Msa0707430:intron | 20.0% |
| !!! | TATTTTGAGCTTATGAATAT+AGG | - | chr4_4:80674106-80674125 | Msa0707430:intron | 20.0% |
| !!! | TTTTTTTGTAGAAAATTGAC+AGG | + | chr4_4:80674402-80674421 | None:intergenic | 20.0% |
| !! | AAAACTATAAAAATGCCTTT+GGG | + | chr4_4:80674430-80674449 | None:intergenic | 20.0% |
| !!! | CAATTGATTTATTACATTAC+TGG | - | chr4_4:80674690-80674709 | Msa0707430:intron | 20.0% |
| !! | TAAAAAAACAGTGCAAAAAA+TGG | + | chr4_4:80674974-80674993 | None:intergenic | 20.0% |
| !!! | ATTTTTTGCACTGTTTTTTT+AGG | - | chr4_4:80674973-80674992 | Msa0707430:intron | 20.0% |
| !!! | TTTTTTGCACTGTTTTTTTA+GGG | - | chr4_4:80674974-80674993 | Msa0707430:intron | 20.0% |
| !! | TTTATAATATTCTTCTGATG+TGG | - | chr4_4:80675443-80675462 | Msa0707430:intron | 20.0% |
| !!! | ATATGTTTTTATGATTGGTA+TGG | - | chr4_4:80676055-80676074 | Msa0707430:CDS | 20.0% |
| !!! | TTCTAAAGTTGATAGAGTAT+TGG | + | chr4_4:80672617-80672636 | None:intergenic | 25.0% |
| !! | AAGAAAAATTGAGTTGCATT+AGG | + | chr4_4:80672668-80672687 | None:intergenic | 25.0% |
| ! | CAATTAAGCCTATAGTTATA+AGG | - | chr4_4:80672845-80672864 | Msa0707430:three_prime_UTR | 25.0% |
| ! | AGTAGTATCCTTATAACTAT+AGG | + | chr4_4:80672856-80672875 | None:intergenic | 25.0% |
| !! | TTGTATTTAGTTTCTACCAA+TGG | - | chr4_4:80672896-80672915 | Msa0707430:intron | 25.0% |
| !!! | TTCTTTAAAACAGTATCCAT+GGG | + | chr4_4:80673095-80673114 | None:intergenic | 25.0% |
| !!! | ATTCTTTAAAACAGTATCCA+TGG | + | chr4_4:80673096-80673115 | None:intergenic | 25.0% |
| ! | TTTAAAGAATATAAGTGGGA+CGG | - | chr4_4:80673106-80673125 | Msa0707430:intron | 25.0% |
| ! | AAAGTTTCTTCATAGTTGAT+TGG | - | chr4_4:80673424-80673443 | Msa0707430:intron | 25.0% |
| !! | TCAGTTCACATTTTATAAAG+TGG | + | chr4_4:80673536-80673555 | None:intergenic | 25.0% |
| ! | AAAATGTGAACTGATAGAAA+AGG | - | chr4_4:80673542-80673561 | Msa0707430:CDS | 25.0% |
| ! | TAGATTACTAGAATGAAAGT+GGG | - | chr4_4:80673571-80673590 | Msa0707430:intron | 25.0% |
| !! | TTCTATAGATAAGTTTTACC+TGG | - | chr4_4:80673654-80673673 | Msa0707430:intron | 25.0% |
| !!! | ATTTTTAGCATAAAATGTCC+AGG | + | chr4_4:80673675-80673694 | None:intergenic | 25.0% |
| !!! | AATAATGGATTTCTAAAGAG+GGG | + | chr4_4:80673719-80673738 | None:intergenic | 25.0% |
| !!! | CTAATAATGGATTTCTAAAG+AGG | + | chr4_4:80673721-80673740 | None:intergenic | 25.0% |
| !! | CTTTAGAAATCCATTATTAG+TGG | - | chr4_4:80673721-80673740 | Msa0707430:intron | 25.0% |
| ! | AAAATAATGAATGTAACTGC+TGG | + | chr4_4:80673943-80673962 | None:intergenic | 25.0% |
| !!! | GAATCTTTTTAGCGATTTAA+TGG | + | chr4_4:80673980-80673999 | None:intergenic | 25.0% |
| !!! | CTTTCTTTTTAGCGATTTAA+TGG | + | chr4_4:80674016-80674035 | None:intergenic | 25.0% |
| ! | CATTAAATCGCTAAAAAGAA+AGG | - | chr4_4:80674014-80674033 | Msa0707430:intron | 25.0% |
| ! | TACGTTAATATACAAAATGG+TGG | + | chr4_4:80674060-80674079 | None:intergenic | 25.0% |
| ! | CTAAAATAAGCTAATCCAAA+CGG | - | chr4_4:80674322-80674341 | Msa0707430:intron | 25.0% |
| ! | GAAAACTATAAAAATGCCTT+TGG | + | chr4_4:80674431-80674450 | None:intergenic | 25.0% |
| ! | AGGGAAAAATATCCATTTAA+GGG | + | chr4_4:80674535-80674554 | None:intergenic | 25.0% |
| ! | AAGGGAAAAATATCCATTTA+AGG | + | chr4_4:80674536-80674555 | None:intergenic | 25.0% |
| !! | TTGTCTTTTATATCTTATGC+TGG | - | chr4_4:80675096-80675115 | Msa0707430:intron | 25.0% |
| !!! | ATTATATACTTGGTGTGTTA+AGG | - | chr4_4:80675373-80675392 | Msa0707430:intron | 25.0% |
| !! | TCTTTCTTATCTTTAGGTTA+CGG | - | chr4_4:80675504-80675523 | Msa0707430:intron | 25.0% |
| !!! | TTTTTATTTTCACTCTGCTA+TGG | - | chr4_4:80675699-80675718 | Msa0707430:intron | 25.0% |
| ! | ATTAATGTATAGCAGTTGAA+TGG | - | chr4_4:80676080-80676099 | Msa0707430:CDS | 25.0% |
| ! | TTTGTGAAATTATTGAACAG+AGG | - | chr4_4:80676361-80676380 | Msa0707430:intron | 25.0% |
| ! | AAATTAGGGTTTGGAATAAG+AGG | + | chr4_4:80672426-80672445 | None:intergenic | 30.0% |
| ! | TCCATGTTTTCAAAGCTTTT+TGG | - | chr4_4:80672568-80672587 | Msa0707430:three_prime_UTR | 30.0% |
| !! | ACCAAAAAGCTTTGAAAACA+TGG | + | chr4_4:80672572-80672591 | None:intergenic | 30.0% |
| !! | GCTTTTTGGTAAAACTAAAC+AGG | - | chr4_4:80672582-80672601 | Msa0707430:three_prime_UTR | 30.0% |
| ATTGATAAGCTACGTTATTG+TGG | - | chr4_4:80672795-80672814 | Msa0707430:three_prime_UTR | 30.0% | |
| CTATAGGCTTAATTGAGATA+TGG | + | chr4_4:80672840-80672859 | None:intergenic | 30.0% | |
| TTAAAGAATATAAGTGGGAC+GGG | - | chr4_4:80673107-80673126 | Msa0707430:intron | 30.0% | |
| !! | AGATTTTTGTGGTAGTGTTT+GGG | + | chr4_4:80673235-80673254 | None:intergenic | 30.0% |
| !! | AAGATTTTTGTGGTAGTGTT+TGG | + | chr4_4:80673236-80673255 | None:intergenic | 30.0% |
| ACTTATTTGAGTCTATCTAC+TGG | + | chr4_4:80673260-80673279 | None:intergenic | 30.0% | |
| ! | TTCTTCATAGTTGATTGGTT+TGG | - | chr4_4:80673429-80673448 | Msa0707430:intron | 30.0% |
| CTAGATTACTAGAATGAAAG+TGG | - | chr4_4:80673570-80673589 | Msa0707430:intron | 30.0% | |
| AAGTGTAGAATAGAATGATC+AGG | + | chr4_4:80673626-80673645 | None:intergenic | 30.0% | |
| TGAATTTCTATCTATTGCAG+CGG | - | chr4_4:80673793-80673812 | Msa0707430:intron | 30.0% | |
| TACAATGTTTGAAAAGGAAG+AGG | - | chr4_4:80673819-80673838 | Msa0707430:intron | 30.0% | |
| !! | CTTTTTAGCGATTTAATGGT+TGG | + | chr4_4:80673976-80673995 | None:intergenic | 30.0% |
| TCGCTAAAAAGATTCAAAAC+TGG | - | chr4_4:80673985-80674004 | Msa0707430:intron | 30.0% | |
| ! | TTTTGTAGAAAATTGACAGG+TGG | + | chr4_4:80674399-80674418 | None:intergenic | 30.0% |
| TACAAAAAAAATCTGCCCAA+AGG | - | chr4_4:80674412-80674431 | Msa0707430:intron | 30.0% | |
| !! | CTACTTTTCTTGCAAAACTT+AGG | - | chr4_4:80674450-80674469 | Msa0707430:intron | 30.0% |
| ! | ATTTGACAATTTTCTCCTGA+TGG | - | chr4_4:80674474-80674493 | Msa0707430:intron | 30.0% |
| !! | GAAAGAGCGTTAAACAAAAA+AGG | + | chr4_4:80675490-80675509 | None:intergenic | 30.0% |
| TAACGCTCTTTCTTATCTTT+AGG | - | chr4_4:80675498-80675517 | Msa0707430:intron | 30.0% | |
| TAACAAGAACTGCTTAAAAC+AGG | + | chr4_4:80676212-80676231 | None:intergenic | 30.0% | |
| !! | CATTGATGATGAGAATGATA+CGG | - | chr4_4:80676276-80676295 | Msa0707430:intron | 30.0% |
| !! | ATTGATGATGAGAATGATAC+GGG | - | chr4_4:80676277-80676296 | Msa0707430:intron | 30.0% |
| TGCGTAAAAAAAATCTACCA+AGG | + | chr4_4:80676437-80676456 | None:intergenic | 30.0% | |
| !! | CAACGTTTTCACGTTTTATT+TGG | + | chr4_4:80676494-80676513 | None:intergenic | 30.0% |
| ! | ATAGTTGGTTCTCTGATATT+AGG | - | chr4_4:80676522-80676541 | Msa0707430:CDS | 30.0% |
| ! | TAGTTGGTTCTCTGATATTA+GGG | - | chr4_4:80676523-80676542 | Msa0707430:CDS | 30.0% |
| AGTAGAGAAATAGAAAGAAG+AGG | - | chr4_4:80676719-80676738 | Msa0707430:five_prime_UTR | 30.0% | |
| !! | TCTCTGTTTTTCTTTTCTAG+AGG | - | chr4_4:80676786-80676805 | Msa0707430:five_prime_UTR | 30.0% |
| !! | CTCTGTTTTTCTTTTCTAGA+GGG | - | chr4_4:80676787-80676806 | Msa0707430:five_prime_UTR | 30.0% |
| AAACGAAATAGAGAAAGCGA+AGG | + | chr4_4:80672301-80672320 | None:intergenic | 35.0% | |
| AAGGAATGATGAGAAGAAGA+AGG | + | chr4_4:80672465-80672484 | None:intergenic | 35.0% | |
| TCATATTGGATTCTGTTGCA+GGG | - | chr4_4:80672506-80672525 | Msa0707430:three_prime_UTR | 35.0% | |
| TACCAATGGTTTACAGTTTG+AGG | - | chr4_4:80672910-80672929 | Msa0707430:intron | 35.0% | |
| ACCAATGGTTTACAGTTTGA+GGG | - | chr4_4:80672911-80672930 | Msa0707430:intron | 35.0% | |
| GCTTGAATTATGTAGACACT+TGG | - | chr4_4:80672964-80672983 | Msa0707430:intron | 35.0% | |
| ACTTGGAATGCTAGAGAAAA+AGG | - | chr4_4:80672981-80673000 | Msa0707430:intron | 35.0% | |
| TCACAAGAGCCAAGAATAAA+AGG | - | chr4_4:80673055-80673074 | Msa0707430:intron | 35.0% | |
| CACAAGAGCCAAGAATAAAA+GGG | - | chr4_4:80673056-80673075 | Msa0707430:intron | 35.0% | |
| ACAAGAGCCAAGAATAAAAG+GGG | - | chr4_4:80673057-80673076 | Msa0707430:intron | 35.0% | |
| ! | AAAACAGTATCCATGGGTTT+TGG | + | chr4_4:80673089-80673108 | None:intergenic | 35.0% |
| ! | ATCTACTGGCAAGATTTTTG+TGG | + | chr4_4:80673246-80673265 | None:intergenic | 35.0% |
| TAACACAAGTGCAAGTCATA+AGG | + | chr4_4:80673313-80673332 | None:intergenic | 35.0% | |
| GACTTGCACTTGTGTTAATT+TGG | - | chr4_4:80673316-80673335 | Msa0707430:intron | 35.0% | |
| CCTTCATTGAAGAGAAACTT+GGG | - | chr4_4:80673376-80673395 | Msa0707430:intron | 35.0% | |
| ! | AAACTTTACCCTCTTTTCCA+CGG | + | chr4_4:80673411-80673430 | None:intergenic | 35.0% |
| ATGACCTATAGAAGCAGTTA+AGG | - | chr4_4:80673464-80673483 | Msa0707430:CDS | 35.0% | |
| !! | TTATAAAGTGGTGTCGTAGT+AGG | + | chr4_4:80673524-80673543 | None:intergenic | 35.0% |
| AAATCCATTATTAGTGGAGC+AGG | - | chr4_4:80673727-80673746 | Msa0707430:intron | 35.0% | |
| CAAAATAAGCTCCATCCAAA+CGG | + | chr4_4:80674093-80674112 | None:intergenic | 35.0% | |
| TTATGAATATAGGCTCCGTT+TGG | - | chr4_4:80674116-80674135 | Msa0707430:intron | 35.0% | |
| CAAAATAAGCTCCATCCAAA+CGG | + | chr4_4:80674093-80674112 | None:intergenic | 35.0% | |
| TGTATTGTATGCGAGTCTAT+GGG | + | chr4_4:80674349-80674368 | None:intergenic | 35.0% | |
| TAGAAAATTGACAGGTGGTT+GGG | + | chr4_4:80674394-80674413 | None:intergenic | 35.0% | |
| TGCGATTTCATGCAAAAACA+TGG | - | chr4_4:80674503-80674522 | Msa0707430:intron | 35.0% | |
| ACATGGACATTTCCCTTAAA+TGG | - | chr4_4:80674520-80674539 | Msa0707430:intron | 35.0% | |
| TCATATAGAATGAGAGCAGA+AGG | - | chr4_4:80674763-80674782 | Msa0707430:intron | 35.0% | |
| CATATAGAATGAGAGCAGAA+GGG | - | chr4_4:80674764-80674783 | Msa0707430:intron | 35.0% | |
| ATATAGAATGAGAGCAGAAG+GGG | - | chr4_4:80674765-80674784 | Msa0707430:intron | 35.0% | |
| CATTGCTCAAATGATTGAAC+TGG | + | chr4_4:80674905-80674924 | None:intergenic | 35.0% | |
| !! | TGAACTATGACTTGTTCATG+CGG | - | chr4_4:80674923-80674942 | Msa0707430:intron | 35.0% |
| ! | AGTGCAAAAAATGGAAGTAC+TGG | + | chr4_4:80674965-80674984 | None:intergenic | 35.0% |
| TTAAGAACTGATCCTCCAAT+CGG | + | chr4_4:80675009-80675028 | None:intergenic | 35.0% | |
| TTATCAGAACAAGACTGAAC+TGG | + | chr4_4:80675051-80675070 | None:intergenic | 35.0% | |
| ! | TGTGTTACAGATGATAATGC+TGG | - | chr4_4:80675124-80675143 | Msa0707430:intron | 35.0% |
| ! | TTACAGATGATAATGCTGGA+AGG | - | chr4_4:80675128-80675147 | Msa0707430:intron | 35.0% |
| TGAGAACATGAAACAGATTC+AGG | - | chr4_4:80675615-80675634 | Msa0707430:intron | 35.0% | |
| ! | TCTGAATTTGTTTGCCATTC+AGG | - | chr4_4:80675793-80675812 | Msa0707430:intron | 35.0% |
| TATAGCAGTTGAATGGTTTG+TGG | - | chr4_4:80676087-80676106 | Msa0707430:CDS | 35.0% | |
| ATGAATTGCTTGAAGCTGTT+TGG | - | chr4_4:80676169-80676188 | Msa0707430:intron | 35.0% | |
| TGATATATTGCTTCTCGCTT+TGG | - | chr4_4:80676233-80676252 | Msa0707430:intron | 35.0% | |
| !! | TTGATGATGAGAATGATACG+GGG | - | chr4_4:80676278-80676297 | Msa0707430:intron | 35.0% |
| ! | TCATCTACTGTGGCATTTTT+GGG | + | chr4_4:80676571-80676590 | None:intergenic | 35.0% |
| ! | TTCATCTACTGTGGCATTTT+TGG | + | chr4_4:80676572-80676591 | None:intergenic | 35.0% |
| CAAACCCTAATTTCTCACCA+GGG | - | chr4_4:80672433-80672452 | Msa0707430:three_prime_UTR | 40.0% | |
| CTCATATTGGATTCTGTTGC+AGG | - | chr4_4:80672505-80672524 | Msa0707430:three_prime_UTR | 40.0% | |
| TCCCTCAAACTGTAAACCAT+TGG | + | chr4_4:80672915-80672934 | None:intergenic | 40.0% | |
| ! | GTACGTACCCCTTTTATTCT+TGG | + | chr4_4:80673067-80673086 | None:intergenic | 40.0% |
| CATAAGGAGGGATACACTAT+GGG | + | chr4_4:80673297-80673316 | None:intergenic | 40.0% | |
| TCATAAGGAGGGATACACTA+TGG | + | chr4_4:80673298-80673317 | None:intergenic | 40.0% | |
| ACAAGTGCAAGTCATAAGGA+GGG | + | chr4_4:80673309-80673328 | None:intergenic | 40.0% | |
| AGTTTCTCTTCAATGAAGGC+TGG | + | chr4_4:80673375-80673394 | None:intergenic | 40.0% | |
| GCCTTCATTGAAGAGAAACT+TGG | - | chr4_4:80673375-80673394 | Msa0707430:intron | 40.0% | |
| CCCAAGTTTCTCTTCAATGA+AGG | + | chr4_4:80673379-80673398 | None:intergenic | 40.0% | |
| CCTATAGAAGCAGTTAAGGA+CGG | - | chr4_4:80673468-80673487 | Msa0707430:CDS | 40.0% | |
| TGAACCTGCTCCACTAATAA+TGG | + | chr4_4:80673734-80673753 | None:intergenic | 40.0% | |
| CGGCGATACAATGTTTGAAA+AGG | - | chr4_4:80673813-80673832 | Msa0707430:intron | 40.0% | |
| GTGTATTGTATGCGAGTCTA+TGG | + | chr4_4:80674350-80674369 | None:intergenic | 40.0% | |
| GTAGAAAATTGACAGGTGGT+TGG | + | chr4_4:80674395-80674414 | None:intergenic | 40.0% | |
| GAAATCGCATAAAAGCCATC+AGG | + | chr4_4:80674492-80674511 | None:intergenic | 40.0% | |
| !! | GAACTATGACTTGTTCATGC+GGG | - | chr4_4:80674924-80674943 | Msa0707430:intron | 40.0% |
| !! | ATACTTGGTGTGTTAAGGCT+TGG | - | chr4_4:80675378-80675397 | Msa0707430:intron | 40.0% |
| ! | TAAGGCTTGGTTGTTGTTGT+TGG | - | chr4_4:80675391-80675410 | Msa0707430:intron | 40.0% |
| TAATGATGTTGATGCGACCA+TGG | - | chr4_4:80675573-80675592 | Msa0707430:intron | 40.0% | |
| CTGTTCGTTAATCTCATCCA+TGG | + | chr4_4:80675593-80675612 | None:intergenic | 40.0% | |
| GAATTATTGTCCGCTCCAAT+TGG | - | chr4_4:80675637-80675656 | Msa0707430:intron | 40.0% | |
| ! | TGCTTCAAGTTCATCCTGAA+TGG | + | chr4_4:80675810-80675829 | None:intergenic | 40.0% |
| AGAACTGCTTAAAACAGGAC+AGG | + | chr4_4:80676207-80676226 | None:intergenic | 40.0% | |
| TATTGCTTCTCGCTTTGGTT+AGG | - | chr4_4:80676238-80676257 | Msa0707430:intron | 40.0% | |
| TGGTTAGGTCAGAATTTAGC+AGG | - | chr4_4:80676253-80676272 | Msa0707430:intron | 40.0% | |
| TACGGGGCATACATAAGAAT+TGG | - | chr4_4:80676294-80676313 | Msa0707430:intron | 40.0% | |
| AAGAATTGGAACCAGTGACA+TGG | - | chr4_4:80676308-80676327 | Msa0707430:intron | 40.0% | |
| AAGATAAAAGCGACTGTGAG+AGG | + | chr4_4:80676343-80676362 | None:intergenic | 40.0% | |
| !! | TTTTGCCTTTGTTGTCACCT+TGG | - | chr4_4:80676417-80676436 | Msa0707430:intron | 40.0% |
| ATCTACCAAGGTGACAACAA+AGG | + | chr4_4:80676425-80676444 | None:intergenic | 40.0% | |
| GTCGAATTTGGGTCTCAATT+TGG | + | chr4_4:80676605-80676624 | None:intergenic | 40.0% | |
| TCCAATCAACGGTCGAATTT+GGG | + | chr4_4:80676616-80676635 | None:intergenic | 40.0% | |
| ATCCAATCAACGGTCGAATT+TGG | + | chr4_4:80676617-80676636 | None:intergenic | 40.0% | |
| ! | AATTCGACCGTTGATTGGAT+CGG | - | chr4_4:80676617-80676636 | Msa0707430:intron | 40.0% |
| GAAAGAAGAGGTGAATGACT+TGG | - | chr4_4:80676731-80676750 | Msa0707430:five_prime_UTR | 40.0% | |
| CCTGGTGAGAAATTAGGGTT+TGG | + | chr4_4:80672435-80672454 | None:intergenic | 45.0% | |
| CCAAACCCTAATTTCTCACC+AGG | - | chr4_4:80672432-80672451 | Msa0707430:three_prime_UTR | 45.0% | |
| CGAACCCTGGTGAGAAATTA+GGG | + | chr4_4:80672440-80672459 | None:intergenic | 45.0% | |
| ACGAACCCTGGTGAGAAATT+AGG | + | chr4_4:80672441-80672460 | None:intergenic | 45.0% | |
| ! | GGAGAGCGTGCTTCTTAAAA+AGG | - | chr4_4:80673002-80673021 | Msa0707430:intron | 45.0% |
| GATACACTATGGGCTCTGTT+TGG | + | chr4_4:80673287-80673306 | None:intergenic | 45.0% | |
| CACAAGTGCAAGTCATAAGG+AGG | + | chr4_4:80673310-80673329 | None:intergenic | 45.0% | |
| ! | TTTACCCTCTTTTCCACGGT+TGG | + | chr4_4:80673407-80673426 | None:intergenic | 45.0% |
| CCGTCCTTAACTGCTTCTAT+AGG | + | chr4_4:80673471-80673490 | None:intergenic | 45.0% | |
| TCAGGTAGTTCGGTAGGTTT+AGG | - | chr4_4:80673495-80673514 | Msa0707430:CDS | 45.0% | |
| CAGGTAGTTCGGTAGGTTTA+GGG | - | chr4_4:80673496-80673515 | Msa0707430:CDS | 45.0% | |
| AGAATGAAAGTGGGAGTGAC+TGG | - | chr4_4:80673580-80673599 | Msa0707430:intron | 45.0% | |
| GAATGAAAGTGGGAGTGACT+GGG | - | chr4_4:80673581-80673600 | Msa0707430:intron | 45.0% | |
| CCTGATCATGAATACGCAAC+TGG | + | chr4_4:80673880-80673899 | None:intergenic | 45.0% | |
| CCAGTTGCGTATTCATGATC+AGG | - | chr4_4:80673877-80673896 | Msa0707430:intron | 45.0% | |
| ACGTAGATATAGGCTCCGTT+TGG | - | chr4_4:80674075-80674094 | Msa0707430:intron | 45.0% | |
| AGATATAGGCTCCGTTTGGA+TGG | - | chr4_4:80674079-80674098 | Msa0707430:intron | 45.0% | |
| GAATATAGGCTCCGTTTGGA+TGG | - | chr4_4:80674120-80674139 | Msa0707430:intron | 45.0% | |
| ! | TTTCCCTTGAGCTTTTGCGT+TGG | - | chr4_4:80674548-80674567 | Msa0707430:intron | 45.0% |
| !! | TTAGGGTTGAGTTGACCGAT+TGG | - | chr4_4:80674991-80675010 | Msa0707430:intron | 45.0% |
| !! | TACTGTTTCTGTGGTTGCCT+TGG | + | chr4_4:80675156-80675175 | None:intergenic | 45.0% |
| AAATCAGCAGCTGCACCAAT+TGG | + | chr4_4:80675655-80675674 | None:intergenic | 45.0% | |
| AGCAGAACTTGAAGAGCTAG+AGG | - | chr4_4:80675826-80675845 | Msa0707430:intron | 45.0% | |
| GCAGAACTTGAAGAGCTAGA+GGG | - | chr4_4:80675827-80675846 | Msa0707430:intron | 45.0% | |
| !! | GCTTCTGGAGTTGTAATTGC+AGG | + | chr4_4:80675881-80675900 | None:intergenic | 45.0% |
| AAAGCTGCCAATTCTTCCTC+AGG | + | chr4_4:80675959-80675978 | None:intergenic | 45.0% | |
| ! | TTTGAGCAGGTCCCTTTTCT+CGG | - | chr4_4:80675996-80676015 | Msa0707430:intron | 45.0% |
| TAGTGTCGTAGCCGAGAAAA+GGG | + | chr4_4:80676010-80676029 | None:intergenic | 45.0% | |
| ATAGTGTCGTAGCCGAGAAA+AGG | + | chr4_4:80676011-80676030 | None:intergenic | 45.0% | |
| AACGTTGCGAGTAGCATAGT+TGG | - | chr4_4:80676507-80676526 | Msa0707430:CDS | 45.0% | |
| CTGATATTAGGGTTGAGCAC+CGG | - | chr4_4:80676534-80676553 | Msa0707430:CDS | 45.0% | |
| TGATATTAGGGTTGAGCACC+GGG | - | chr4_4:80676535-80676554 | Msa0707430:CDS | 45.0% | |
| GCCACAGTAGATGAAACTGA+AGG | - | chr4_4:80676577-80676596 | Msa0707430:five_prime_UTR | 45.0% | |
| GCCTTCAGTTTCATCTACTG+TGG | + | chr4_4:80676581-80676600 | None:intergenic | 45.0% | |
| ACCCAAATTCGACCGTTGAT+TGG | - | chr4_4:80676612-80676631 | Msa0707430:intron | 45.0% | |
| !! | ACCGTTGATTGGATCGGTTT+TGG | - | chr4_4:80676623-80676642 | Msa0707430:intron | 45.0% |
| GCCAAAACCGATCCAATCAA+CGG | + | chr4_4:80676627-80676646 | None:intergenic | 45.0% | |
| !! | GTTGATTGGATCGGTTTTGG+CGG | - | chr4_4:80676626-80676645 | Msa0707430:intron | 45.0% |
| !! | ATATATATATATTATATACT+TGG | - | chr4_4:80675363-80675382 | Msa0707430:intron | 5.0% |
| TTCCTCCCTTCTACTAAGCG+CGG | + | chr4_4:80672265-80672284 | None:intergenic | 50.0% | |
| CGTGCAAGTGCAAATGCGAT+GGG | + | chr4_4:80672343-80672362 | None:intergenic | 50.0% | |
| GAAGAAGAAGGAACGAACCC+TGG | + | chr4_4:80672453-80672472 | None:intergenic | 50.0% | |
| GATTCTGTTGCAGGGAGACT+GGG | - | chr4_4:80672514-80672533 | Msa0707430:three_prime_UTR | 50.0% | |
| AGGCTGCAGCTGAAGTTGAA+AGG | - | chr4_4:80673022-80673041 | Msa0707430:intron | 50.0% | |
| GGCTGCAGCTGAAGTTGAAA+GGG | - | chr4_4:80673023-80673042 | Msa0707430:intron | 50.0% | |
| TAGCACCAACCGTGGAAAAG+AGG | - | chr4_4:80673399-80673418 | Msa0707430:intron | 50.0% | |
| AGCACCAACCGTGGAAAAGA+GGG | - | chr4_4:80673400-80673419 | Msa0707430:intron | 50.0% | |
| GAACAGCAAGTAGAGCAGCT+TGG | - | chr4_4:80673848-80673867 | Msa0707430:intron | 50.0% | |
| GCACCAACGCAAAAGCTCAA+GGG | + | chr4_4:80674554-80674573 | None:intergenic | 50.0% | |
| AGCACCAACGCAAAAGCTCA+AGG | + | chr4_4:80674555-80674574 | None:intergenic | 50.0% | |
| ! | ACTTGTTCATGCGGGTTGAC+TGG | - | chr4_4:80674932-80674951 | Msa0707430:intron | 50.0% |
| !! | GATAATGCTGGAAGGTGCCA+AGG | - | chr4_4:80675136-80675155 | Msa0707430:intron | 50.0% |
| !! | CAATGCGGCTACTGTTTCTG+TGG | + | chr4_4:80675165-80675184 | None:intergenic | 50.0% |
| ACAGTAGCCGCATTGAGAAC+TGG | - | chr4_4:80675170-80675189 | Msa0707430:intron | 50.0% | |
| !!! | TGCAGCTGCTGATTTTGACG+AGG | - | chr4_4:80675660-80675679 | Msa0707430:intron | 50.0% |
| TTTGTATGCACCGGACGAGT+AGG | + | chr4_4:80675929-80675948 | None:intergenic | 50.0% | |
| GCCAATTCTTCCTCAGGAGT+GGG | + | chr4_4:80675953-80675972 | None:intergenic | 50.0% | |
| TGCCAATTCTTCCTCAGGAG+TGG | + | chr4_4:80675954-80675973 | None:intergenic | 50.0% | |
| GGCAGAATTCTCCATGTCAC+TGG | + | chr4_4:80676322-80676341 | None:intergenic | 50.0% | |
| !!! | GGATCGGTTTTGGCGGATTT+CGG | - | chr4_4:80676633-80676652 | Msa0707430:intron | 50.0% |
| CGGATTTCGGATTTGTCCGT+CGG | - | chr4_4:80676646-80676665 | Msa0707430:intron | 50.0% | |
| !! | GATTTGTCCGTCGGTTTGTC+CGG | - | chr4_4:80676655-80676674 | Msa0707430:intron | 50.0% |
| !! | ATTTGTCCGTCGGTTTGTCC+GGG | - | chr4_4:80676656-80676675 | Msa0707430:intron | 50.0% |
| !! | TTTGTCCGGGTGGATTGGAT+CGG | - | chr4_4:80676669-80676688 | Msa0707430:intron | 50.0% |
| CATAACCGATCCAATCCACC+CGG | + | chr4_4:80676677-80676696 | None:intergenic | 50.0% | |
| !! | GGGTGGATTGGATCGGTTAT+GGG | - | chr4_4:80676676-80676695 | Msa0707430:intron | 50.0% |
| GCGTGCAAGTGCAAATGCGA+TGG | + | chr4_4:80672344-80672363 | None:intergenic | 55.0% | |
| GGATTCTGTTGCAGGGAGAC+TGG | - | chr4_4:80672513-80672532 | Msa0707430:three_prime_UTR | 55.0% | |
| GGGGTACGTACCAAAACCCA+TGG | - | chr4_4:80673076-80673095 | Msa0707430:intron | 55.0% | |
| AACTTGGGTAGCACCAACCG+TGG | - | chr4_4:80673391-80673410 | Msa0707430:intron | 55.0% | |
| GCAGTTAAGGACGGCAGATC+AGG | - | chr4_4:80673477-80673496 | Msa0707430:CDS | 55.0% | |
| GGACGGCAGATCAGGTAGTT+CGG | - | chr4_4:80673485-80673504 | Msa0707430:CDS | 55.0% | |
| GGCAGATCAGGTAGTTCGGT+AGG | - | chr4_4:80673489-80673508 | Msa0707430:CDS | 55.0% | |
| TGCGAGTCTATGGGTCCGTT+TGG | + | chr4_4:80674340-80674359 | None:intergenic | 55.0% | |
| AGGTGGTTGGGCTTCTGATC+GGG | + | chr4_4:80674382-80674401 | None:intergenic | 55.0% | |
| CAGGTGGTTGGGCTTCTGAT+CGG | + | chr4_4:80674383-80674402 | None:intergenic | 55.0% | |
| TGAGAGCAGAAGGGGAAGAC+AGG | - | chr4_4:80674773-80674792 | Msa0707430:intron | 55.0% | |
| !! | GGGTTGAGTTGACCGATTGG+AGG | - | chr4_4:80674994-80675013 | Msa0707430:intron | 55.0% |
| AGCCGCATTGAGAACTGGAG+CGG | - | chr4_4:80675175-80675194 | Msa0707430:intron | 55.0% | |
| AGCCGCTCCAGTTCTCAATG+CGG | + | chr4_4:80675180-80675199 | None:intergenic | 55.0% | |
| AGCAGCTGCACCAATTGGAG+CGG | + | chr4_4:80675650-80675669 | None:intergenic | 55.0% | |
| !! | AGAGCTAGAGGGTGCTGAGT+TGG | - | chr4_4:80675838-80675857 | Msa0707430:intron | 55.0% |
| ! | GGAGTGGGCTTTGTATGCAC+CGG | + | chr4_4:80675938-80675957 | None:intergenic | 55.0% |
| GCATACAAAGCCCACTCCTG+AGG | - | chr4_4:80675940-80675959 | Msa0707430:intron | 55.0% | |
| GCCCACTCCTGAGGAAGAAT+TGG | - | chr4_4:80675949-80675968 | Msa0707430:intron | 55.0% | |
| GGCAGCTTTGCAAGCTGAGA+TGG | - | chr4_4:80675970-80675989 | Msa0707430:intron | 55.0% | |
| !! | TATTAGGGTTGAGCACCGGG+CGG | - | chr4_4:80676538-80676557 | Msa0707430:CDS | 55.0% |
| !! | TTTTTGGGCCCAAAACCGCC+CGG | + | chr4_4:80676556-80676575 | None:intergenic | 55.0% |
| AATCCACCCGGACAAACCGA+CGG | + | chr4_4:80676665-80676684 | None:intergenic | 55.0% | |
| !! | CGGGTGGATTGGATCGGTTA+TGG | - | chr4_4:80676675-80676694 | Msa0707430:intron | 55.0% |
| GGGTGCTTGCTTCTTCTCTC+TGG | - | chr4_4:80676807-80676826 | Msa0707430:five_prime_UTR | 55.0% | |
| TCTACTAAGCGCGGCCCACA+CGG | + | chr4_4:80672256-80672275 | None:intergenic | 60.0% | |
| TGTGGGCCGCGCTTAGTAGA+AGG | - | chr4_4:80672256-80672275 | Msa0707430:three_prime_UTR | 60.0% | |
| GTGGGCCGCGCTTAGTAGAA+GGG | - | chr4_4:80672257-80672276 | Msa0707430:three_prime_UTR | 60.0% | |
| GGGACATGCACAGAGGCTTC+TGG | + | chr4_4:80675896-80675915 | None:intergenic | 60.0% | |
| CCTAGCTGGGACATGCACAG+AGG | + | chr4_4:80675903-80675922 | None:intergenic | 60.0% | |
| CCTCTGTGCATGTCCCAGCT+AGG | - | chr4_4:80675900-80675919 | Msa0707430:intron | 60.0% | |
| CTGTGCATGTCCCAGCTAGG+CGG | - | chr4_4:80675903-80675922 | Msa0707430:intron | 60.0% | |
| ! | GCTGAGATGGCGCTTTGAGC+AGG | - | chr4_4:80675983-80676002 | Msa0707430:intron | 60.0% |
| !!! | GTTGAGCACCGGGCGGTTTT+GGG | - | chr4_4:80676545-80676564 | Msa0707430:CDS | 60.0% |
| !! | GTCGGTTTGTCCGGGTGGAT+TGG | - | chr4_4:80676664-80676683 | Msa0707430:intron | 60.0% |
| GGCCGCGCTTAGTAGAAGGG+AGG | - | chr4_4:80672260-80672279 | Msa0707430:three_prime_UTR | 65.0% | |
| GACGAGTAGGCCGCCTAGCT+GGG | + | chr4_4:80675916-80675935 | None:intergenic | 65.0% | |
| AGCTAGGCGGCCTACTCGTC+CGG | - | chr4_4:80675916-80675935 | Msa0707430:intron | 65.0% | |
| !!! | GGTTGAGCACCGGGCGGTTT+TGG | - | chr4_4:80676544-80676563 | Msa0707430:CDS | 65.0% |
| !! | TGTCCGTCGGTTTGTCCGGG+TGG | - | chr4_4:80676659-80676678 | Msa0707430:intron | 65.0% |
| GGACGAGTAGGCCGCCTAGC+TGG | + | chr4_4:80675917-80675936 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 80672241 | 80676892 | 80672241 | ID=Msa0707430;Name=Msa0707430 |
| chr4_4 | mRNA | 80672241 | 80676892 | 80672241 | ID=Msa0707430-mRNA-1;Parent=Msa0707430;Name=Msa0707430-mRNA-1;_AED=0.09;_eAED=0.09;_QI=246|1|1|1|0.71|0.5|8|632|222 |
| chr4_4 | exon | 80672241 | 80672868 | 80672241 | ID=Msa0707430-mRNA-1:exon:26303;Parent=Msa0707430-mRNA-1 |
| chr4_4 | exon | 80673129 | 80673318 | 80673129 | ID=Msa0707430-mRNA-1:exon:26302;Parent=Msa0707430-mRNA-1 |
| chr4_4 | exon | 80673452 | 80673566 | 80673452 | ID=Msa0707430-mRNA-1:exon:26301;Parent=Msa0707430-mRNA-1 |
| chr4_4 | exon | 80673908 | 80673999 | 80673908 | ID=Msa0707430-mRNA-1:exon:26300;Parent=Msa0707430-mRNA-1 |
| chr4_4 | exon | 80675235 | 80675320 | 80675235 | ID=Msa0707430-mRNA-1:exon:26299;Parent=Msa0707430-mRNA-1 |
| chr4_4 | exon | 80676055 | 80676154 | 80676055 | ID=Msa0707430-mRNA-1:exon:26298;Parent=Msa0707430-mRNA-1 |
| chr4_4 | exon | 80676485 | 80676606 | 80676485 | ID=Msa0707430-mRNA-1:exon:26297;Parent=Msa0707430-mRNA-1 |
| chr4_4 | exon | 80676679 | 80676892 | 80676679 | ID=Msa0707430-mRNA-1:exon:26296;Parent=Msa0707430-mRNA-1 |
| chr4_4 | five_prime_UTR | 80676679 | 80676892 | 80676679 | ID=Msa0707430-mRNA-1:five_prime_utr;Parent=Msa0707430-mRNA-1 |
| chr4_4 | five_prime_UTR | 80676575 | 80676606 | 80676575 | ID=Msa0707430-mRNA-1:five_prime_utr;Parent=Msa0707430-mRNA-1 |
| chr4_4 | CDS | 80676485 | 80676574 | 80676485 | ID=Msa0707430-mRNA-1:cds;Parent=Msa0707430-mRNA-1 |
| chr4_4 | CDS | 80676055 | 80676154 | 80676055 | ID=Msa0707430-mRNA-1:cds;Parent=Msa0707430-mRNA-1 |
| chr4_4 | CDS | 80675235 | 80675320 | 80675235 | ID=Msa0707430-mRNA-1:cds;Parent=Msa0707430-mRNA-1 |
| chr4_4 | CDS | 80673908 | 80673999 | 80673908 | ID=Msa0707430-mRNA-1:cds;Parent=Msa0707430-mRNA-1 |
| chr4_4 | CDS | 80673452 | 80673566 | 80673452 | ID=Msa0707430-mRNA-1:cds;Parent=Msa0707430-mRNA-1 |
| chr4_4 | CDS | 80673133 | 80673318 | 80673133 | ID=Msa0707430-mRNA-1:cds;Parent=Msa0707430-mRNA-1 |
| chr4_4 | three_prime_UTR | 80673129 | 80673132 | 80673129 | ID=Msa0707430-mRNA-1:three_prime_utr;Parent=Msa0707430-mRNA-1 |
| chr4_4 | three_prime_UTR | 80672241 | 80672868 | 80672241 | ID=Msa0707430-mRNA-1:three_prime_utr;Parent=Msa0707430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
