Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0709470 | XP_024625777.1 | 98.113 | 106 | 2 | 0 | 1 | 106 | 1 | 106 | 1.47e-70 | 216 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0709470 | sp|Q6NLG7|RFA3B_ARATH | 58.491 | 106 | 44 | 0 | 1 | 106 | 1 | 106 | 2.71e-45 | 144 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0709470 | A0A396H7E4 | 98.113 | 106 | 2 | 0 | 1 | 106 | 1 | 106 | 7.03e-71 | 216 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0709470 | Msa0790820 | 0.809876 | 1.523344e-50 | -8.615850e-47 |
| Msa0709470 | Msa1125960 | 0.891887 | 2.634344e-74 | -8.615850e-47 |
| Msa0709470 | Msa1171330 | 0.891615 | 3.379453e-74 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0709470 | MtrunA17_Chr7g0266481 | 98.113 | 106 | 2 | 0 | 1 | 106 | 1 | 106 | 1.35e-74 | 216 |
| Msa0709470 | MtrunA17_Chr1g0210621 | 54.206 | 107 | 48 | 1 | 1 | 106 | 1 | 107 | 2.05e-38 | 124 |
| Msa0709470 | MtrunA17_Chr1g0210651 | 55.140 | 107 | 47 | 1 | 1 | 106 | 1 | 107 | 7.15e-38 | 123 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0709470 | AT4G18590.1 | 58.491 | 106 | 44 | 0 | 1 | 106 | 1 | 106 | 2.75e-46 | 144 |
| Msa0709470 | AT3G52630.2 | 55.140 | 107 | 47 | 1 | 1 | 106 | 1 | 107 | 7.74e-42 | 133 |
| Msa0709470 | AT3G52630.1 | 55.140 | 107 | 47 | 1 | 1 | 106 | 1 | 107 | 7.74e-42 | 133 |
Find 53 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGTAGTTTGTTGCTGTTTA+TGG | 0.128601 | 5_1:-634464 | Msa0709470:intron |
| AACCACTTCTTCTTTCATTC+TGG | 0.135063 | 5_1:-634394 | Msa0709470:three_prime_UTR |
| AACCCTTCTTCCGACATAAA+AGG | 0.241109 | 5_1:+636349 | None:intergenic |
| ACAAGGACTGCAGGGCTTAA+TGG | 0.275580 | 5_1:+636389 | None:intergenic |
| GAGAAGCAGTTGATTGTAAA+AGG | 0.288767 | 5_1:-636266 | Msa0709470:CDS |
| ACCACTTCTTCTTTCATTCT+GGG | 0.304925 | 5_1:-634393 | Msa0709470:three_prime_UTR |
| ACCAACTTTGGTGATGAAAT+TGG | 0.344480 | 5_1:-636161 | Msa0709470:intron |
| TTCTTCTTTCATTCTGGGCA+TGG | 0.349494 | 5_1:-634388 | Msa0709470:three_prime_UTR |
| TTGCAAGCTGACATAGCTTA+TGG | 0.355631 | 5_1:+635955 | None:intergenic |
| GGTCCATAACTCAGCTTTGA+TGG | 0.369681 | 5_1:+636181 | None:intergenic |
| AGGAGTACAGTAGAAGGTTC+TGG | 0.374761 | 5_1:-637357 | Msa0709470:five_prime_UTR |
| ACAATCAACTGCTTCTCATC+TGG | 0.376539 | 5_1:+636272 | None:intergenic |
| GAAGGTTCTGGAAAGGAAAA+AGG | 0.382096 | 5_1:-637345 | Msa0709470:five_prime_UTR |
| ATCTGCAAATTGAATCAATC+TGG | 0.421426 | 5_1:-637255 | Msa0709470:intron |
| ACCAATTTCATCACCAAAGT+TGG | 0.430140 | 5_1:+636160 | None:intergenic |
| CCGTATGTTAAAGTTATTCA+CGG | 0.432394 | 5_1:+634165 | None:intergenic |
| ACAAAGACATCTCTATCATA+TGG | 0.434457 | 5_1:-635874 | Msa0709470:three_prime_UTR |
| ACAAAACTTGTAAGAGGAGC+AGG | 0.439485 | 5_1:+636236 | None:intergenic |
| TCTTCTTTCATTCTGGGCAT+GGG | 0.443266 | 5_1:-634387 | Msa0709470:three_prime_UTR |
| ACTTCTACAAAACTTGTAAG+AGG | 0.459678 | 5_1:+636230 | None:intergenic |
| GCTGAGTTATGGACCAACTT+TGG | 0.463853 | 5_1:-636173 | Msa0709470:CDS |
| TCTGCATTGACAAGGACTGC+AGG | 0.468536 | 5_1:+636380 | None:intergenic |
| ACCCTTCTTCCGACATAAAA+GGG | 0.468915 | 5_1:+636350 | None:intergenic |
| AAGCTATGTCAGCTTGCAAA+TGG | 0.472567 | 5_1:-635951 | Msa0709470:CDS |
| TCTGACGCTCTAGCTGTCAT+TGG | 0.479697 | 5_1:-636302 | Msa0709470:CDS |
| GACCAGAGGAGTACAGTAGA+AGG | 0.493178 | 5_1:-637363 | Msa0709470:five_prime_UTR |
| TGCCATGAGGATCACAGATC+CGG | 0.493199 | 5_1:+634431 | None:intergenic |
| AGTCCATCAAAGCTGAGTTA+TGG | 0.498331 | 5_1:-636184 | Msa0709470:CDS |
| AACCTTCTACTGTACTCCTC+TGG | 0.508205 | 5_1:+637361 | None:intergenic |
| AAGGGTTCGTACAGTGATGC+AGG | 0.527340 | 5_1:-636333 | Msa0709470:CDS |
| AGGAGACATTACTGTTGTGT+TGG | 0.530242 | 5_1:-635842 | Msa0709470:three_prime_UTR |
| CTGCATTGACAAGGACTGCA+GGG | 0.550141 | 5_1:+636381 | None:intergenic |
| GCCCAGAATGAAAGAAGAAG+TGG | 0.562913 | 5_1:+634392 | None:intergenic |
| TGACCGAAACTCACCGGCGG+TGG | 0.564393 | 5_1:+634352 | None:intergenic |
| CCGTGAATAACTTTAACATA+CGG | 0.566463 | 5_1:-634165 | Msa0709470:three_prime_UTR |
| GGTCAATCCTTTCCCACCAT+GGG | 0.567013 | 5_1:+634052 | None:intergenic |
| CGCCGGATCTGTGATCCTCA+TGG | 0.583969 | 5_1:-634433 | Msa0709470:three_prime_UTR |
| AGGTCAATCCTTTCCCACCA+TGG | 0.598390 | 5_1:+634051 | None:intergenic |
| CATTCTGGGCATGGGCACAT+CGG | 0.605883 | 5_1:-634379 | Msa0709470:three_prime_UTR |
| ATAAATAGAGGGAGGACCAG+AGG | 0.608531 | 5_1:-637377 | None:intergenic |
| CAAAACTTGTAAGAGGAGCA+GGG | 0.615820 | 5_1:+636237 | None:intergenic |
| TACAGTAGAAGGTTCTGGAA+AGG | 0.618140 | 5_1:-637352 | Msa0709470:five_prime_UTR |
| CTATCATATGGAATAACTAG+AGG | 0.627927 | 5_1:-635862 | Msa0709470:three_prime_UTR |
| GAGACGAGAGAGTAGAGCGA+GGG | 0.635654 | 5_1:+637318 | None:intergenic |
| AAAACTTGTAAGAGGAGCAG+GGG | 0.643901 | 5_1:+636238 | None:intergenic |
| CTTGCTGTAACTCAACTCAC+AGG | 0.644780 | 5_1:+635910 | None:intergenic |
| GCACATCGGAGAGCCACCGC+CGG | 0.655988 | 5_1:-634365 | Msa0709470:intron |
| GCAACAGTTCTGCATTGACA+AGG | 0.657999 | 5_1:+636372 | None:intergenic |
| TGAATAACTTTAACATACGG+AGG | 0.661665 | 5_1:-634162 | Msa0709470:three_prime_UTR |
| CGAGACGAGAGAGTAGAGCG+AGG | 0.669211 | 5_1:+637317 | None:intergenic |
| TGTTTATGGAAAACAAACGC+CGG | 0.692895 | 5_1:-634450 | Msa0709470:three_prime_UTR |
| AACAGAGAGAACTTGCCATG+AGG | 0.697702 | 5_1:+634418 | None:intergenic |
| AAACTTGTAAGAGGAGCAGG+GGG | 0.714728 | 5_1:+636239 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTTAAACAATTTAAACA+AGG | + | chr5_1:634471-634490 | None:intergenic | 10.0% |
| !! | ATTAAAATTTAAATGAAATG+TGG | - | chr5_1:634487-634506 | Msa0709470:intron | 10.0% |
| !! | TTGAAATATATAAAAATTTC+GGG | - | chr5_1:635657-635676 | Msa0709470:intron | 10.0% |
| !! | TGAAATATATAAAAATTTCG+GGG | - | chr5_1:635658-635677 | Msa0709470:intron | 15.0% |
| !!! | TTATTTTGTAGACAAATTTA+CGG | - | chr5_1:636478-636497 | Msa0709470:intron | 15.0% |
| !!! | CAATTTTCTCAAAATACTAT+CGG | + | chr5_1:634579-634598 | None:intergenic | 20.0% |
| !!! | GTTAGTTCTTTTGTATATTT+TGG | - | chr5_1:634726-634745 | Msa0709470:intron | 20.0% |
| !!! | AGTGTTTTCCTATAATTTTT+AGG | + | chr5_1:634776-634795 | None:intergenic | 20.0% |
| !! | GTAATGATATTTATTCTCTA+TGG | - | chr5_1:635348-635367 | Msa0709470:intron | 20.0% |
| !! | TTGAAATTTCACTTATAACA+AGG | + | chr5_1:635375-635394 | None:intergenic | 20.0% |
| !!! | ATATGATTTTGTCTATCTAA+AGG | - | chr5_1:636384-636403 | Msa0709470:CDS | 20.0% |
| !!! | TTTTTAACCATTAGATTGAA+AGG | - | chr5_1:636550-636569 | Msa0709470:intron | 20.0% |
| !!! | TTTTAACCATTAGATTGAAA+GGG | - | chr5_1:636551-636570 | Msa0709470:intron | 20.0% |
| !! | AGAGTAAGATTATAAGATTT+AGG | + | chr5_1:636700-636719 | None:intergenic | 20.0% |
| ! | CAATCATGAACACAAAATTA+GGG | + | chr5_1:634323-634342 | None:intergenic | 25.0% |
| ! | TCAATCATGAACACAAAATT+AGG | + | chr5_1:634324-634343 | None:intergenic | 25.0% |
| ! | TATTTGTAGATTTGACTGAA+GGG | - | chr5_1:634409-634428 | Msa0709470:three_prime_UTR | 25.0% |
| ! | ACTAACTAGATAGGTATAAA+TGG | + | chr5_1:634712-634731 | None:intergenic | 25.0% |
| ! | TACAAAAGAACTAACTAGAT+AGG | + | chr5_1:634721-634740 | None:intergenic | 25.0% |
| !!! | TTTCCTATAATTTTTAGGAG+CGG | + | chr5_1:634771-634790 | None:intergenic | 25.0% |
| !! | CTTAATTTGGAGTCAAAATA+AGG | + | chr5_1:634973-634992 | None:intergenic | 25.0% |
| !!! | ACAAGTTTTGTAGAAGTTAT+TGG | - | chr5_1:635192-635211 | Msa0709470:intron | 25.0% |
| !!! | ATATTTTGTTTTTGTTCCCA+TGG | - | chr5_1:635609-635628 | Msa0709470:intron | 25.0% |
| ! | AAGCAGATATTATTTACCAT+GGG | + | chr5_1:635628-635647 | None:intergenic | 25.0% |
| ! | ATGTTGAGAAATAGATTTGT+TGG | - | chr5_1:635764-635783 | Msa0709470:intron | 25.0% |
| !! | TCGATAAGTAAATTTTCAGT+TGG | + | chr5_1:635942-635961 | None:intergenic | 25.0% |
| ! | TCCAAAAGAAAAGATTACTT+GGG | + | chr5_1:636182-636201 | None:intergenic | 25.0% |
| ! | ATCCAAAAGAAAAGATTACT+TGG | + | chr5_1:636183-636202 | None:intergenic | 25.0% |
| ! | AAATAGTAGAAATGCTACTA+AGG | - | chr5_1:636274-636293 | Msa0709470:CDS | 25.0% |
| !!! | CTCTAAAGTTAACTACATAA+AGG | - | chr5_1:636411-636430 | Msa0709470:intron | 25.0% |
| ! | AATTATGTGTTTCTTCCTAT+GGG | - | chr5_1:636739-636758 | Msa0709470:intron | 25.0% |
| !! | ATGTTTGTTGAATTAACCTT+TGG | - | chr5_1:636797-636816 | Msa0709470:intron | 25.0% |
| ! | TTTAACATGATCTAGCATAA+TGG | + | chr5_1:636882-636901 | None:intergenic | 25.0% |
| !! | GATGAAGTATAATGGAAATA+AGG | + | chr5_1:636923-636942 | None:intergenic | 25.0% |
| ! | AGTCATATGATGAAGTATAA+TGG | + | chr5_1:636931-636950 | None:intergenic | 25.0% |
| ! | TTATTATTGTTTGTCTCCTA+TGG | - | chr5_1:637205-637224 | Msa0709470:intron | 25.0% |
| !! | GGTTAAAAAAATTTTTCCCA+TGG | - | chr5_1:637348-637367 | Msa0709470:five_prime_UTR | 25.0% |
| !! | TAAAAAAATTTTTCCCATGG+TGG | - | chr5_1:637351-637370 | Msa0709470:five_prime_UTR | 25.0% |
| !! | AAAAAAATTTTTCCCATGGT+GGG | - | chr5_1:637352-637371 | Msa0709470:five_prime_UTR | 25.0% |
| ATCTGCAAATTGAATCAATC+TGG | - | chr5_1:634161-634180 | Msa0709470:three_prime_UTR | 30.0% | |
| AATGAAACGATGAATTGGAA+AGG | + | chr5_1:634194-634213 | None:intergenic | 30.0% | |
| TAGAGAATGAAACGATGAAT+TGG | + | chr5_1:634199-634218 | None:intergenic | 30.0% | |
| ! | GTGTAAAGAAGCATGAAAAA+TGG | + | chr5_1:634227-634246 | None:intergenic | 30.0% |
| ACAGAAAACACAAAAGAACA+CGG | + | chr5_1:634288-634307 | None:intergenic | 30.0% | |
| GTATTTGTAGATTTGACTGA+AGG | - | chr5_1:634408-634427 | Msa0709470:three_prime_UTR | 30.0% | |
| ! | AATTACAGTTTTACCGAATC+AGG | - | chr5_1:634821-634840 | Msa0709470:intron | 30.0% |
| ATTTCAAATGTCTCCTGATT+CGG | + | chr5_1:634837-634856 | None:intergenic | 30.0% | |
| GATGCATTATTACATTAAGC+TGG | - | chr5_1:634881-634900 | Msa0709470:intron | 30.0% | |
| !! | TAAGGTGAAAAAGGTATTGA+TGG | + | chr5_1:634955-634974 | None:intergenic | 30.0% |
| GAGTCAAAATAAGGTGAAAA+AGG | + | chr5_1:634964-634983 | None:intergenic | 30.0% | |
| CACAACAAGATGACTTAATT+TGG | + | chr5_1:634986-635005 | None:intergenic | 30.0% | |
| ! | TGTGCATATTTTGCAGAATA+TGG | - | chr5_1:635002-635021 | Msa0709470:intron | 30.0% |
| ACTTCTACAAAACTTGTAAG+AGG | + | chr5_1:635189-635208 | None:intergenic | 30.0% | |
| ! | TTTATTCCCTTTTCTCAAAC+TGG | - | chr5_1:635286-635305 | Msa0709470:intron | 30.0% |
| TTTCTAAGCATATTAAGCTG+TGG | - | chr5_1:635396-635415 | Msa0709470:intron | 30.0% | |
| TTCTAAGCATATTAAGCTGT+GGG | - | chr5_1:635397-635416 | Msa0709470:intron | 30.0% | |
| ACAAAGACATCTCTATCATA+TGG | - | chr5_1:635542-635561 | Msa0709470:intron | 30.0% | |
| CTATCATATGGAATAACTAG+AGG | - | chr5_1:635554-635573 | Msa0709470:intron | 30.0% | |
| CAAGCAGATATTATTTACCA+TGG | + | chr5_1:635629-635648 | None:intergenic | 30.0% | |
| TGTGAACTATCATCTAAAAG+GGG | + | chr5_1:635871-635890 | None:intergenic | 30.0% | |
| CTGTGAACTATCATCTAAAA+GGG | + | chr5_1:635872-635891 | None:intergenic | 30.0% | |
| TCTGTGAACTATCATCTAAA+AGG | + | chr5_1:635873-635892 | None:intergenic | 30.0% | |
| ! | ACCCAAGTAATCTTTTCTTT+TGG | - | chr5_1:636178-636197 | Msa0709470:CDS | 30.0% |
| !! | TCAACAGCTAAACTACTTTT+TGG | + | chr5_1:636301-636320 | None:intergenic | 30.0% |
| ! | TTTTGTAGACAAATTTACGG+TGG | - | chr5_1:636481-636500 | Msa0709470:intron | 30.0% |
| AAAAAAAACTTTCCCATGGT+GGG | + | chr5_1:636535-636554 | None:intergenic | 30.0% | |
| TAAAAAAAACTTTCCCATGG+TGG | + | chr5_1:636536-636555 | None:intergenic | 30.0% | |
| GGTTAAAAAAAACTTTCCCA+TGG | + | chr5_1:636539-636558 | None:intergenic | 30.0% | |
| AATGTTCCCTTTCAATCTAA+TGG | + | chr5_1:636560-636579 | None:intergenic | 30.0% | |
| GGGAACATTGATCTTATTAT+AGG | - | chr5_1:636571-636590 | Msa0709470:intron | 30.0% | |
| GCAAGAAGAAAAATATAGTG+TGG | + | chr5_1:636601-636620 | None:intergenic | 30.0% | |
| AGGCTGAAATCAATTGTTTA+GGG | + | chr5_1:636680-636699 | None:intergenic | 30.0% | |
| TAGGCTGAAATCAATTGTTT+AGG | + | chr5_1:636681-636700 | None:intergenic | 30.0% | |
| CAATTATGTGTTTCTTCCTA+TGG | - | chr5_1:636738-636757 | Msa0709470:intron | 30.0% | |
| !! | TAGTAGTTTGTTGCTGTTTA+TGG | - | chr5_1:636952-636971 | Msa0709470:intron | 30.0% |
| CAATAGAAGAAAACATAAGC+CGG | + | chr5_1:637096-637115 | None:intergenic | 30.0% | |
| ATCAGATCTATATGAGTAAG+TGG | + | chr5_1:637151-637170 | None:intergenic | 30.0% | |
| CCGTATGTTAAAGTTATTCA+CGG | + | chr5_1:637254-637273 | None:intergenic | 30.0% | |
| CCGTGAATAACTTTAACATA+CGG | - | chr5_1:637251-637270 | Msa0709470:intron | 30.0% | |
| TGAATAACTTTAACATACGG+AGG | - | chr5_1:637254-637273 | Msa0709470:intron | 30.0% | |
| ! | AGTGTTCTCTTTTAATCTGA+TGG | - | chr5_1:637327-637346 | Msa0709470:five_prime_UTR | 30.0% |
| AAATTGCTGAAAAACGAAGC+GGG | + | chr5_1:634139-634158 | None:intergenic | 35.0% | |
| CAAATTGCTGAAAAACGAAG+CGG | + | chr5_1:634140-634159 | None:intergenic | 35.0% | |
| TTCAAGATACTATCAGACAC+CGG | - | chr5_1:634639-634658 | Msa0709470:intron | 35.0% | |
| !! | CTATAATTTTTAGGAGCGGA+AGG | + | chr5_1:634767-634786 | None:intergenic | 35.0% |
| CTTCCGCTCCTAAAAATTAT+AGG | - | chr5_1:634765-634784 | Msa0709470:intron | 35.0% | |
| ! | GAGACATTTGAAATCTGTAC+AGG | - | chr5_1:634843-634862 | Msa0709470:intron | 35.0% |
| GAGAAGCAGTTGATTGTAAA+AGG | - | chr5_1:635150-635169 | Msa0709470:intron | 35.0% | |
| !! | ACCAACTTTGGTGATGAAAT+TGG | - | chr5_1:635255-635274 | Msa0709470:intron | 35.0% |
| ACCAATTTCATCACCAAAGT+TGG | + | chr5_1:635259-635278 | None:intergenic | 35.0% | |
| TGACAACCAGTTTGAGAAAA+GGG | + | chr5_1:635295-635314 | None:intergenic | 35.0% | |
| ATGACAACCAGTTTGAGAAA+AGG | + | chr5_1:635296-635315 | None:intergenic | 35.0% | |
| ATGCTGATCACTGCATTAAA+AGG | + | chr5_1:635822-635841 | None:intergenic | 35.0% | |
| ATTTCTTCAGATGCTGTTCA+TGG | + | chr5_1:636048-636067 | None:intergenic | 35.0% | |
| TACTTGGGTCAAATGATTTG+AGG | + | chr5_1:636167-636186 | None:intergenic | 35.0% | |
| ! | TTTTTCTTCTCTCGAAATGC+TGG | + | chr5_1:636255-636274 | None:intergenic | 35.0% |
| GAGTAAATTTGTGCAGCTAA+AGG | - | chr5_1:636321-636340 | Msa0709470:CDS | 35.0% | |
| AATTTGTGCAGCTAAAGGTT+TGG | - | chr5_1:636326-636345 | Msa0709470:CDS | 35.0% | |
| ! | CTACACACTTGACAACTTTT+TGG | - | chr5_1:636450-636469 | Msa0709470:intron | 35.0% |
| ATTTACGGTGGCATTTAACA+TGG | - | chr5_1:636493-636512 | Msa0709470:intron | 35.0% | |
| TTTACGGTGGCATTTAACAT+GGG | - | chr5_1:636494-636513 | Msa0709470:intron | 35.0% | |
| GCTGAAATCAATTGTTTAGG+GGG | + | chr5_1:636678-636697 | None:intergenic | 35.0% | |
| GGCTGAAATCAATTGTTTAG+GGG | + | chr5_1:636679-636698 | None:intergenic | 35.0% | |
| AATAGACATCTCTTTCCCAT+AGG | + | chr5_1:636757-636776 | None:intergenic | 35.0% | |
| ! | GATGTCTATTTTCCAGATGT+TGG | - | chr5_1:636767-636786 | Msa0709470:intron | 35.0% |
| ! | CTATTTTCCAGATGTTGGAA+AGG | - | chr5_1:636772-636791 | Msa0709470:intron | 35.0% |
| AACATAACCTTTCCAACATC+TGG | + | chr5_1:636782-636801 | None:intergenic | 35.0% | |
| ATTGTTACAGTCATTCCGAT+GGG | - | chr5_1:636834-636853 | Msa0709470:intron | 35.0% | |
| TTGAACAAAATTGAGCCCAT+CGG | + | chr5_1:636852-636871 | None:intergenic | 35.0% | |
| TGTTTATGGAAAACAAACGC+CGG | - | chr5_1:636966-636985 | Msa0709470:intron | 35.0% | |
| AACCACTTCTTCTTTCATTC+TGG | - | chr5_1:637022-637041 | Msa0709470:intron | 35.0% | |
| ACCACTTCTTCTTTCATTCT+GGG | - | chr5_1:637023-637042 | Msa0709470:intron | 35.0% | |
| CTATATGAGTAAGTGGAAAG+TGG | + | chr5_1:637144-637163 | None:intergenic | 35.0% | |
| !! | TACAGTAGAAGGTTCTGGAA+AGG | - | chr5_1:634064-634083 | Msa0709470:three_prime_UTR | 40.0% |
| !! | GAAGGTTCTGGAAAGGAAAA+AGG | - | chr5_1:634071-634090 | Msa0709470:three_prime_UTR | 40.0% |
| GGATAGAATACTACGTAGCA+CGG | + | chr5_1:634691-634710 | None:intergenic | 40.0% | |
| ! | GAACTGTTGCCCTTTTATGT+CGG | - | chr5_1:635057-635076 | Msa0709470:intron | 40.0% |
| ACCCTTCTTCCGACATAAAA+GGG | + | chr5_1:635069-635088 | None:intergenic | 40.0% | |
| AACCCTTCTTCCGACATAAA+AGG | + | chr5_1:635070-635089 | None:intergenic | 40.0% | |
| ACAATCAACTGCTTCTCATC+TGG | + | chr5_1:635147-635166 | None:intergenic | 40.0% | |
| AAAACTTGTAAGAGGAGCAG+GGG | + | chr5_1:635181-635200 | None:intergenic | 40.0% | |
| CAAAACTTGTAAGAGGAGCA+GGG | + | chr5_1:635182-635201 | None:intergenic | 40.0% | |
| ACAAAACTTGTAAGAGGAGC+AGG | + | chr5_1:635183-635202 | None:intergenic | 40.0% | |
| AGTCCATCAAAGCTGAGTTA+TGG | - | chr5_1:635232-635251 | Msa0709470:intron | 40.0% | |
| TTGCAAGCTGACATAGCTTA+TGG | + | chr5_1:635464-635483 | None:intergenic | 40.0% | |
| AAGCTATGTCAGCTTGCAAA+TGG | - | chr5_1:635465-635484 | Msa0709470:intron | 40.0% | |
| AGGAGACATTACTGTTGTGT+TGG | - | chr5_1:635574-635593 | Msa0709470:intron | 40.0% | |
| ATGAGTATATGCTTGCACGT+TGG | - | chr5_1:635905-635924 | Msa0709470:three_prime_UTR | 40.0% | |
| TCAAAACGTGGATGTGAGTT+GGG | + | chr5_1:636136-636155 | None:intergenic | 40.0% | |
| ATCAAAACGTGGATGTGAGT+TGG | + | chr5_1:636137-636156 | None:intergenic | 40.0% | |
| TCTCTCATAGACACACATTC+TGG | - | chr5_1:636202-636221 | Msa0709470:CDS | 40.0% | |
| TGCTGGTGAATTCTTGGAAA+CGG | + | chr5_1:636238-636257 | None:intergenic | 40.0% | |
| TCGAAATGCTGGTGAATTCT+TGG | + | chr5_1:636244-636263 | None:intergenic | 40.0% | |
| GAAATCAATTGTTTAGGGGG+TGG | + | chr5_1:636675-636694 | None:intergenic | 40.0% | |
| CATTGTTACAGTCATTCCGA+TGG | - | chr5_1:636833-636852 | Msa0709470:intron | 40.0% | |
| TTCTTCTTTCATTCTGGGCA+TGG | - | chr5_1:637028-637047 | Msa0709470:intron | 40.0% | |
| TCTTCTTTCATTCTGGGCAT+GGG | - | chr5_1:637029-637048 | Msa0709470:intron | 40.0% | |
| TATTGTTTGTCTCCTATGGC+AGG | - | chr5_1:637209-637228 | Msa0709470:intron | 40.0% | |
| !! | AATTTTTCCCATGGTGGGAA+AGG | - | chr5_1:637357-637376 | Msa0709470:five_prime_UTR | 40.0% |
| AACCTTCTACTGTACTCCTC+TGG | + | chr5_1:634058-634077 | None:intergenic | 45.0% | |
| ! | AGGAGTACAGTAGAAGGTTC+TGG | - | chr5_1:634059-634078 | Msa0709470:three_prime_UTR | 45.0% |
| TGAAAAACGAAGCGGGAGAT+TGG | + | chr5_1:634132-634151 | None:intergenic | 45.0% | |
| ACACAAAAGAACACGGAGCA+AGG | + | chr5_1:634281-634300 | None:intergenic | 45.0% | |
| ATGTGACATTGTCAGTGCTG+CGG | + | chr5_1:634551-634570 | None:intergenic | 45.0% | |
| TAACATGACACTGATGCACG+TGG | + | chr5_1:634618-634637 | None:intergenic | 45.0% | |
| CTTCAAATCGAAGGCTTGTC+CGG | + | chr5_1:634665-634684 | None:intergenic | 45.0% | |
| GCACGGATACTTCAAATCGA+AGG | + | chr5_1:634674-634693 | None:intergenic | 45.0% | |
| ! | GCAACAGTTCTGCATTGACA+AGG | + | chr5_1:635047-635066 | None:intergenic | 45.0% |
| ! | TGCCCTTTTATGTCGGAAGA+AGG | - | chr5_1:635064-635083 | Msa0709470:intron | 45.0% |
| ! | GCCCTTTTATGTCGGAAGAA+GGG | - | chr5_1:635065-635084 | Msa0709470:intron | 45.0% |
| AAACTTGTAAGAGGAGCAGG+GGG | + | chr5_1:635180-635199 | None:intergenic | 45.0% | |
| ! | GGTCCATAACTCAGCTTTGA+TGG | + | chr5_1:635238-635257 | None:intergenic | 45.0% |
| GCTGAGTTATGGACCAACTT+TGG | - | chr5_1:635243-635262 | Msa0709470:intron | 45.0% | |
| ! | CTTGCTGTAACTCAACTCAC+AGG | + | chr5_1:635509-635528 | None:intergenic | 45.0% |
| TGGTTTACCTATGTCTTGCC+TGG | + | chr5_1:636028-636047 | None:intergenic | 45.0% | |
| ! | GATGTGAGTTGGGAAGTCTT+TGG | + | chr5_1:636126-636145 | None:intergenic | 45.0% |
| GAGGTGCGTAAATCAAAACG+TGG | + | chr5_1:636148-636167 | None:intergenic | 45.0% | |
| TGGTGAATTCTTGGAAACGG+TGG | + | chr5_1:636235-636254 | None:intergenic | 45.0% | |
| GGTGGCATTTAACATGGGAA+AGG | - | chr5_1:636499-636518 | Msa0709470:intron | 45.0% | |
| ! | AAACTTTCCCATGGTGGGAA+AGG | + | chr5_1:636530-636549 | None:intergenic | 45.0% |
| ATGCATACACGTTGCACCAA+AGG | + | chr5_1:636816-636835 | None:intergenic | 45.0% | |
| AACAGAGAGAACTTGCCATG+AGG | + | chr5_1:637001-637020 | None:intergenic | 45.0% | |
| GCCCAGAATGAAAGAAGAAG+TGG | + | chr5_1:637027-637046 | None:intergenic | 45.0% | |
| AGAAGATGACCGAAACTCAC+CGG | + | chr5_1:637073-637092 | None:intergenic | 45.0% | |
| TGAGTTTCGGTCATCTTCTC+CGG | - | chr5_1:637074-637093 | Msa0709470:intron | 45.0% | |
| TTTGTCTCCTATGGCAGGAA+TGG | - | chr5_1:637214-637233 | Msa0709470:intron | 45.0% | |
| !! | ATTGAAATATATAAAAATTT+CGG | - | chr5_1:635656-635675 | Msa0709470:intron | 5.0% |
| ! | GACCAGAGGAGTACAGTAGA+AGG | - | chr5_1:634053-634072 | Msa0709470:three_prime_UTR | 50.0% |
| AACACGGAGCAAGGAGAAAC+TGG | + | chr5_1:634272-634291 | None:intergenic | 50.0% | |
| TGTGACATTGTCAGTGCTGC+GGG | + | chr5_1:634550-634569 | None:intergenic | 50.0% | |
| AGATACTATCAGACACCGGC+CGG | - | chr5_1:634643-634662 | Msa0709470:intron | 50.0% | |
| ACAAGGACTGCAGGGCTTAA+TGG | + | chr5_1:635030-635049 | None:intergenic | 50.0% | |
| ! | CTGCATTGACAAGGACTGCA+GGG | + | chr5_1:635038-635057 | None:intergenic | 50.0% |
| ! | TCTGCATTGACAAGGACTGC+AGG | + | chr5_1:635039-635058 | None:intergenic | 50.0% |
| AAGGGTTCGTACAGTGATGC+AGG | - | chr5_1:635083-635102 | Msa0709470:intron | 50.0% | |
| TCTGACGCTCTAGCTGTCAT+TGG | - | chr5_1:635114-635133 | Msa0709470:intron | 50.0% | |
| ! | TGGTTCTGTGAGGGTAAGGA+TGG | + | chr5_1:636008-636027 | None:intergenic | 50.0% |
| ATCCTTACCCTCACAGAACC+AGG | - | chr5_1:636007-636026 | Msa0709470:intron | 50.0% | |
| !! | TGTCTTGCCTGGTTCTGTGA+GGG | + | chr5_1:636017-636036 | None:intergenic | 50.0% |
| !! | ATGTCTTGCCTGGTTCTGTG+AGG | + | chr5_1:636018-636037 | None:intergenic | 50.0% |
| CACAGAACCAGGCAAGACAT+AGG | - | chr5_1:636018-636037 | Msa0709470:intron | 50.0% | |
| AGGTCAATCCTTTCCCACCA+TGG | - | chr5_1:636519-636538 | Msa0709470:intron | 50.0% | |
| GGTCAATCCTTTCCCACCAT+GGG | - | chr5_1:636520-636539 | Msa0709470:intron | 50.0% | |
| GGTGTCTCATGAGTCATGAG+AGG | + | chr5_1:636633-636652 | None:intergenic | 50.0% | |
| TTTAGGGGGTGGCTTAGAGT+CGG | + | chr5_1:636664-636683 | None:intergenic | 50.0% | |
| TGCCATGAGGATCACAGATC+CGG | + | chr5_1:636988-637007 | None:intergenic | 50.0% | |
| TCTGCTTCCATTCCTGCCAT+AGG | + | chr5_1:637224-637243 | None:intergenic | 50.0% | |
| GGTCAATCCTTTCCCACCAT+GGG | + | chr5_1:636520-636539 | None:intergenic | 50.0% | |
| AGGTCAATCCTTTCCCACCA+TGG | + | chr5_1:636519-636538 | None:intergenic | 50.0% | |
| GAGACGAGAGAGTAGAGCGA+GGG | + | chr5_1:634101-634120 | None:intergenic | 55.0% | |
| AAATCGAAGGCTTGTCCGGC+CGG | + | chr5_1:634661-634680 | None:intergenic | 55.0% | |
| !! | TGCCTGGTTCTGTGAGGGTA+AGG | + | chr5_1:636012-636031 | None:intergenic | 55.0% |
| TGGAGTGAGAGTTCACGCGA+AGG | + | chr5_1:636106-636125 | None:intergenic | 55.0% | |
| CATTCTGGGCATGGGCACAT+CGG | - | chr5_1:637037-637056 | Msa0709470:intron | 55.0% | |
| AGATGACCGAAACTCACCGG+CGG | + | chr5_1:637070-637089 | None:intergenic | 55.0% | |
| CGAGACGAGAGAGTAGAGCG+AGG | + | chr5_1:634102-634121 | None:intergenic | 60.0% | |
| ! | GGCTTAGAGTCGGTGGTGGT+GGG | + | chr5_1:636654-636673 | None:intergenic | 60.0% |
| ! | TGGCTTAGAGTCGGTGGTGG+TGG | + | chr5_1:636655-636674 | None:intergenic | 60.0% |
| CGCCGGATCTGTGATCCTCA+TGG | - | chr5_1:636983-637002 | Msa0709470:intron | 60.0% | |
| GGGTGGCTTAGAGTCGGTGG+TGG | + | chr5_1:636658-636677 | None:intergenic | 65.0% | |
| AGGGGGTGGCTTAGAGTCGG+TGG | + | chr5_1:636661-636680 | None:intergenic | 65.0% | |
| GAGCCACCGCCGGTGAGTTT+CGG | - | chr5_1:637061-637080 | Msa0709470:intron | 65.0% | |
| TGACCGAAACTCACCGGCGG+TGG | + | chr5_1:637067-637086 | None:intergenic | 65.0% | |
| GCACATCGGAGAGCCACCGC+CGG | - | chr5_1:637051-637070 | Msa0709470:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 634048 | 637390 | 634048 | ID=Msa0709470;Name=Msa0709470 |
| chr5_1 | mRNA | 634048 | 637390 | 634048 | ID=Msa0709470-mRNA-1;Parent=Msa0709470;Name=Msa0709470-mRNA-1;_AED=0.14;_eAED=0.14;_QI=138|1|1|1|0.5|0.2|5|393|106 |
| chr5_1 | exon | 634048 | 634207 | 634048 | ID=Msa0709470-mRNA-1:exon:301;Parent=Msa0709470-mRNA-1 |
| chr5_1 | exon | 634366 | 634480 | 634366 | ID=Msa0709470-mRNA-1:exon:300;Parent=Msa0709470-mRNA-1 |
| chr5_1 | exon | 635808 | 635990 | 635808 | ID=Msa0709470-mRNA-1:exon:299;Parent=Msa0709470-mRNA-1 |
| chr5_1 | exon | 636162 | 636420 | 636162 | ID=Msa0709470-mRNA-1:exon:298;Parent=Msa0709470-mRNA-1 |
| chr5_1 | exon | 637256 | 637390 | 637256 | ID=Msa0709470-mRNA-1:exon:297;Parent=Msa0709470-mRNA-1 |
| chr5_1 | five_prime_UTR | 637256 | 637390 | 637256 | ID=Msa0709470-mRNA-1:five_prime_utr;Parent=Msa0709470-mRNA-1 |
| chr5_1 | five_prime_UTR | 636418 | 636420 | 636418 | ID=Msa0709470-mRNA-1:five_prime_utr;Parent=Msa0709470-mRNA-1 |
| chr5_1 | CDS | 636162 | 636417 | 636162 | ID=Msa0709470-mRNA-1:cds;Parent=Msa0709470-mRNA-1 |
| chr5_1 | CDS | 635926 | 635990 | 635926 | ID=Msa0709470-mRNA-1:cds;Parent=Msa0709470-mRNA-1 |
| chr5_1 | three_prime_UTR | 635808 | 635925 | 635808 | ID=Msa0709470-mRNA-1:three_prime_utr;Parent=Msa0709470-mRNA-1 |
| chr5_1 | three_prime_UTR | 634366 | 634480 | 634366 | ID=Msa0709470-mRNA-1:three_prime_utr;Parent=Msa0709470-mRNA-1 |
| chr5_1 | three_prime_UTR | 634048 | 634207 | 634048 | ID=Msa0709470-mRNA-1:three_prime_utr;Parent=Msa0709470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
