AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1125960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1125960 MtrunA17_Chr7g0266481 98.113 106 2 0 1 106 1 106 1.35e-74 216
Msa1125960 MtrunA17_Chr1g0210621 54.206 107 48 1 1 106 1 107 2.05e-38 124
Msa1125960 MtrunA17_Chr1g0210651 55.140 107 47 1 1 106 1 107 7.15e-38 123
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1125960 AT4G18590.1 58.491 106 44 0 1 106 1 106 2.75e-46 144
Msa1125960 AT3G52630.2 55.140 107 47 1 1 106 1 107 7.74e-42 133
Msa1125960 AT3G52630.1 55.140 107 47 1 1 106 1 107 7.74e-42 133

Find 42 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCCTTCTTCCGACATAAA+AGG 0.241109 7_3:-77435913 None:intergenic
TCTGTGAACTATCATCTAAA+AGG 0.263776 7_3:-77436716 None:intergenic
ACAAGGACTGCAGGGCTTAA+TGG 0.275580 7_3:-77435873 None:intergenic
GAGAAGCAGTTGATTGTAAA+AGG 0.288767 7_3:+77435996 Msa1125960:CDS
ATGCTGATCACTGCATTAAA+AGG 0.296057 7_3:-77436665 None:intergenic
ACCAACTTTGGTGATGAAAT+TGG 0.344480 7_3:+77436101 Msa1125960:CDS
TTGCAAGCTGACATAGCTTA+TGG 0.355631 7_3:-77436307 None:intergenic
GGTCCATAACTCAGCTTTGA+TGG 0.369681 7_3:-77436081 None:intergenic
AGGAGTACAGTAGAAGGTTC+TGG 0.374761 7_3:+77434901 Msa1125960:five_prime_UTR
ACAATCAACTGCTTCTCATC+TGG 0.376539 7_3:-77435990 None:intergenic
CTGTGAACTATCATCTAAAA+GGG 0.380041 7_3:-77436715 None:intergenic
GAAGGTTCTGGAAAGGAAAA+AGG 0.382096 7_3:+77434913 Msa1125960:five_prime_UTR
ATCTGCAAATTGAATCAATC+TGG 0.421426 7_3:+77435005 Msa1125960:five_prime_UTR
ACCAATTTCATCACCAAAGT+TGG 0.430140 7_3:-77436102 None:intergenic
ACAAAGACATCTCTATCATA+TGG 0.434457 7_3:+77436388 Msa1125960:three_prime_UTR
ATGTTGAGAAATAGATTTGT+TGG 0.434718 7_3:+77436612 Msa1125960:three_prime_UTR
ACAAAACTTGTAAGAGGAGC+AGG 0.439485 7_3:-77436026 None:intergenic
ACTTCTACAAAACTTGTAAG+AGG 0.459678 7_3:-77436032 None:intergenic
GCTGAGTTATGGACCAACTT+TGG 0.463853 7_3:+77436089 Msa1125960:CDS
TCTGCATTGACAAGGACTGC+AGG 0.468536 7_3:-77435882 None:intergenic
ACCCTTCTTCCGACATAAAA+GGG 0.468915 7_3:-77435912 None:intergenic
AAGCTATGTCAGCTTGCAAA+TGG 0.472567 7_3:+77436311 Msa1125960:CDS
TCTGACGCTCTAGCTGTCAT+TGG 0.479697 7_3:+77435960 Msa1125960:CDS
GACCAGAGGAGTACAGTAGA+AGG 0.493178 7_3:+77434895 Msa1125960:five_prime_UTR
AGTCCATCAAAGCTGAGTTA+TGG 0.498331 7_3:+77436078 Msa1125960:CDS
AACCTTCTACTGTACTCCTC+TGG 0.508205 7_3:-77434897 None:intergenic
AAGGGTTCGTACAGTGATGC+AGG 0.527340 7_3:+77435929 Msa1125960:CDS
AGGAGACATTACTGTTGTGT+TGG 0.530242 7_3:+77436420 Msa1125960:three_prime_UTR
CAAGCAGATATTATTTACCA+TGG 0.547450 7_3:-77436472 None:intergenic
CTGCATTGACAAGGACTGCA+GGG 0.550141 7_3:-77435881 None:intergenic
AAGCAGATATTATTTACCAT+GGG 0.598106 7_3:-77436471 None:intergenic
ATAAATAGAGGGAGGACCAG+AGG 0.608531 7_3:+77434881 None:intergenic
CAAAACTTGTAAGAGGAGCA+GGG 0.615820 7_3:-77436025 None:intergenic
TACAGTAGAAGGTTCTGGAA+AGG 0.618140 7_3:+77434906 Msa1125960:five_prime_UTR
CTATCATATGGAATAACTAG+AGG 0.627927 7_3:+77436400 Msa1125960:three_prime_UTR
GAGACGAGAGAGTAGAGCGA+GGG 0.635654 7_3:-77434942 None:intergenic
AAAACTTGTAAGAGGAGCAG+GGG 0.643901 7_3:-77436024 None:intergenic
CTTGCTGTAACTCAACTCAC+AGG 0.644780 7_3:-77436352 None:intergenic
TGTGAACTATCATCTAAAAG+GGG 0.646431 7_3:-77436714 None:intergenic
GCAACAGTTCTGCATTGACA+AGG 0.657999 7_3:-77435890 None:intergenic
CGAGACGAGAGAGTAGAGCG+AGG 0.669211 7_3:-77434943 None:intergenic
AAACTTGTAAGAGGAGCAGG+GGG 0.714728 7_3:-77436023 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTTAAACAATTTAAACA+AGG - chr7_3:77435315-77435334 None:intergenic 10.0%
!! ATTAAAATTTAAATGAAATG+TGG + chr7_3:77435331-77435350 Msa1125960:intron 10.0%
!!! TGAAATCTATAAAATTTTTT+CGG + chr7_3:77436504-77436523 Msa1125960:three_prime_UTR 10.0%
!! TAATTTAAACAATTTAAACA+AGG - chr7_3:77435315-77435334 None:intergenic 10.0%
!! ATTAAAATTTAAATGAAATG+TGG + chr7_3:77435331-77435350 Msa1125960:intron 10.0%
!!! TGAAATCTATAAAATTTTTT+CGG + chr7_3:77436504-77436523 Msa1125960:three_prime_UTR 10.0%
!!! GAAATCTATAAAATTTTTTC+GGG + chr7_3:77436505-77436524 Msa1125960:three_prime_UTR 15.0%
!!! AAATCTATAAAATTTTTTCG+GGG + chr7_3:77436506-77436525 Msa1125960:three_prime_UTR 15.0%
!!! GAAATCTATAAAATTTTTTC+GGG + chr7_3:77436505-77436524 Msa1125960:three_prime_UTR 15.0%
!!! AAATCTATAAAATTTTTTCG+GGG + chr7_3:77436506-77436525 Msa1125960:three_prime_UTR 15.0%
!!! CAATTTTCTCAAAATACTAT+CGG - chr7_3:77435423-77435442 None:intergenic 20.0%
!!! GTTAGTTCTTTTGTATATTT+TGG + chr7_3:77435570-77435589 Msa1125960:intron 20.0%
!!! AGTGTTTTCCTATAATTTTT+AGG - chr7_3:77435620-77435639 None:intergenic 20.0%
!! GTAATGATATTTATTCTCTA+TGG + chr7_3:77436194-77436213 Msa1125960:intron 20.0%
!! TTGAAATTTCACTTATAACA+AGG - chr7_3:77436221-77436240 None:intergenic 20.0%
!!! CAATTTTCTCAAAATACTAT+CGG - chr7_3:77435423-77435442 None:intergenic 20.0%
!!! GTTAGTTCTTTTGTATATTT+TGG + chr7_3:77435570-77435589 Msa1125960:intron 20.0%
!!! AGTGTTTTCCTATAATTTTT+AGG - chr7_3:77435620-77435639 None:intergenic 20.0%
!! GTAATGATATTTATTCTCTA+TGG + chr7_3:77436194-77436213 Msa1125960:intron 20.0%
!! TTGAAATTTCACTTATAACA+AGG - chr7_3:77436221-77436240 None:intergenic 20.0%
! CAATCATGAACACAAAATTA+GGG - chr7_3:77435167-77435186 None:intergenic 25.0%
! TCAATCATGAACACAAAATT+AGG - chr7_3:77435168-77435187 None:intergenic 25.0%
! TATTTGTAGATTTGACTGAA+GGG + chr7_3:77435253-77435272 Msa1125960:intron 25.0%
! ACTAACTAGATAGGTATAAA+TGG - chr7_3:77435556-77435575 None:intergenic 25.0%
! TACAAAAGAACTAACTAGAT+AGG - chr7_3:77435565-77435584 None:intergenic 25.0%
!!! TTTCCTATAATTTTTAGGAG+CGG - chr7_3:77435615-77435634 None:intergenic 25.0%
!! CTTAATTTGGAGTCAAAATA+AGG - chr7_3:77435819-77435838 None:intergenic 25.0%
!!! ACAAGTTTTGTAGAAGTTAT+TGG + chr7_3:77436038-77436057 Msa1125960:CDS 25.0%
!!! ATATTTTGTTTTTGTTCCCA+TGG + chr7_3:77436455-77436474 Msa1125960:three_prime_UTR 25.0%
! AAGCAGATATTATTTACCAT+GGG - chr7_3:77436474-77436493 None:intergenic 25.0%
! ATGTTGAGAAATAGATTTGT+TGG + chr7_3:77436612-77436631 Msa1125960:three_prime_UTR 25.0%
!! ATAGTTCACAGATTGATTTA+TGG + chr7_3:77436727-77436746 Msa1125960:three_prime_UTR 25.0%
!! TAGTTCACAGATTGATTTAT+GGG + chr7_3:77436728-77436747 Msa1125960:three_prime_UTR 25.0%
! CAATCATGAACACAAAATTA+GGG - chr7_3:77435167-77435186 None:intergenic 25.0%
! TCAATCATGAACACAAAATT+AGG - chr7_3:77435168-77435187 None:intergenic 25.0%
! TATTTGTAGATTTGACTGAA+GGG + chr7_3:77435253-77435272 Msa1125960:intron 25.0%
! ACTAACTAGATAGGTATAAA+TGG - chr7_3:77435556-77435575 None:intergenic 25.0%
! TACAAAAGAACTAACTAGAT+AGG - chr7_3:77435565-77435584 None:intergenic 25.0%
!!! TTTCCTATAATTTTTAGGAG+CGG - chr7_3:77435615-77435634 None:intergenic 25.0%
!! CTTAATTTGGAGTCAAAATA+AGG - chr7_3:77435819-77435838 None:intergenic 25.0%
!!! ACAAGTTTTGTAGAAGTTAT+TGG + chr7_3:77436038-77436057 Msa1125960:CDS 25.0%
!!! ATATTTTGTTTTTGTTCCCA+TGG + chr7_3:77436455-77436474 Msa1125960:three_prime_UTR 25.0%
! AAGCAGATATTATTTACCAT+GGG - chr7_3:77436474-77436493 None:intergenic 25.0%
! ATGTTGAGAAATAGATTTGT+TGG + chr7_3:77436612-77436631 Msa1125960:three_prime_UTR 25.0%
ATCTGCAAATTGAATCAATC+TGG + chr7_3:77435005-77435024 Msa1125960:five_prime_UTR 30.0%
AATGAAACGATGAATTGGAA+AGG - chr7_3:77435038-77435057 None:intergenic 30.0%
TAGAGAATGAAACGATGAAT+TGG - chr7_3:77435043-77435062 None:intergenic 30.0%
! GTGTAAAGAAGCATGAAAAA+TGG - chr7_3:77435071-77435090 None:intergenic 30.0%
ACAGAAAACACAAAAGAACA+CGG - chr7_3:77435132-77435151 None:intergenic 30.0%
GTATTTGTAGATTTGACTGA+AGG + chr7_3:77435252-77435271 Msa1125960:intron 30.0%
! AATTACAGTTTTACCGAATC+AGG + chr7_3:77435665-77435684 Msa1125960:intron 30.0%
ATTTCAAATGTCTCCTGATT+CGG - chr7_3:77435681-77435700 None:intergenic 30.0%
GATGCATTATTACATTAAGC+TGG + chr7_3:77435727-77435746 Msa1125960:intron 30.0%
!! TAAGGTGAAAAAGGTATTGA+TGG - chr7_3:77435801-77435820 None:intergenic 30.0%
GAGTCAAAATAAGGTGAAAA+AGG - chr7_3:77435810-77435829 None:intergenic 30.0%
CACAACAAGATGACTTAATT+TGG - chr7_3:77435832-77435851 None:intergenic 30.0%
! TGTGCATATTTTGCAGAATA+TGG + chr7_3:77435848-77435867 Msa1125960:intron 30.0%
ACTTCTACAAAACTTGTAAG+AGG - chr7_3:77436035-77436054 None:intergenic 30.0%
! TTTATTCCCTTTTCTCAAAC+TGG + chr7_3:77436132-77436151 Msa1125960:intron 30.0%
TTTCTAAGCATATTAAGCTG+TGG + chr7_3:77436242-77436261 Msa1125960:intron 30.0%
TTCTAAGCATATTAAGCTGT+GGG + chr7_3:77436243-77436262 Msa1125960:intron 30.0%
ACAAAGACATCTCTATCATA+TGG + chr7_3:77436388-77436407 Msa1125960:three_prime_UTR 30.0%
CTATCATATGGAATAACTAG+AGG + chr7_3:77436400-77436419 Msa1125960:three_prime_UTR 30.0%
CAAGCAGATATTATTTACCA+TGG - chr7_3:77436475-77436494 None:intergenic 30.0%
TGTGAACTATCATCTAAAAG+GGG - chr7_3:77436717-77436736 None:intergenic 30.0%
CTGTGAACTATCATCTAAAA+GGG - chr7_3:77436718-77436737 None:intergenic 30.0%
TCTGTGAACTATCATCTAAA+AGG - chr7_3:77436719-77436738 None:intergenic 30.0%
! AGTTCACAGATTGATTTATG+GGG + chr7_3:77436729-77436748 Msa1125960:three_prime_UTR 30.0%
ATCTGCAAATTGAATCAATC+TGG + chr7_3:77435005-77435024 Msa1125960:five_prime_UTR 30.0%
AATGAAACGATGAATTGGAA+AGG - chr7_3:77435038-77435057 None:intergenic 30.0%
TAGAGAATGAAACGATGAAT+TGG - chr7_3:77435043-77435062 None:intergenic 30.0%
! GTGTAAAGAAGCATGAAAAA+TGG - chr7_3:77435071-77435090 None:intergenic 30.0%
ACAGAAAACACAAAAGAACA+CGG - chr7_3:77435132-77435151 None:intergenic 30.0%
GTATTTGTAGATTTGACTGA+AGG + chr7_3:77435252-77435271 Msa1125960:intron 30.0%
! AATTACAGTTTTACCGAATC+AGG + chr7_3:77435665-77435684 Msa1125960:intron 30.0%
ATTTCAAATGTCTCCTGATT+CGG - chr7_3:77435681-77435700 None:intergenic 30.0%
GATGCATTATTACATTAAGC+TGG + chr7_3:77435727-77435746 Msa1125960:intron 30.0%
!! TAAGGTGAAAAAGGTATTGA+TGG - chr7_3:77435801-77435820 None:intergenic 30.0%
GAGTCAAAATAAGGTGAAAA+AGG - chr7_3:77435810-77435829 None:intergenic 30.0%
CACAACAAGATGACTTAATT+TGG - chr7_3:77435832-77435851 None:intergenic 30.0%
! TGTGCATATTTTGCAGAATA+TGG + chr7_3:77435848-77435867 Msa1125960:intron 30.0%
ACTTCTACAAAACTTGTAAG+AGG - chr7_3:77436035-77436054 None:intergenic 30.0%
! TTTATTCCCTTTTCTCAAAC+TGG + chr7_3:77436132-77436151 Msa1125960:intron 30.0%
TTTCTAAGCATATTAAGCTG+TGG + chr7_3:77436242-77436261 Msa1125960:intron 30.0%
TTCTAAGCATATTAAGCTGT+GGG + chr7_3:77436243-77436262 Msa1125960:intron 30.0%
ACAAAGACATCTCTATCATA+TGG + chr7_3:77436388-77436407 Msa1125960:three_prime_UTR 30.0%
CTATCATATGGAATAACTAG+AGG + chr7_3:77436400-77436419 Msa1125960:three_prime_UTR 30.0%
CAAGCAGATATTATTTACCA+TGG - chr7_3:77436475-77436494 None:intergenic 30.0%
TGTGAACTATCATCTAAAAG+GGG - chr7_3:77436717-77436736 None:intergenic 30.0%
CTGTGAACTATCATCTAAAA+GGG - chr7_3:77436718-77436737 None:intergenic 30.0%
TCTGTGAACTATCATCTAAA+AGG - chr7_3:77436719-77436738 None:intergenic 30.0%
AAATTGCTGAAAAACGAAGC+GGG - chr7_3:77434983-77435002 None:intergenic 35.0%
CAAATTGCTGAAAAACGAAG+CGG - chr7_3:77434984-77435003 None:intergenic 35.0%
TTCAAGATACTATCAGACAC+CGG + chr7_3:77435483-77435502 Msa1125960:intron 35.0%
!! CTATAATTTTTAGGAGCGGA+AGG - chr7_3:77435611-77435630 None:intergenic 35.0%
CTTCCGCTCCTAAAAATTAT+AGG + chr7_3:77435609-77435628 Msa1125960:intron 35.0%
! GAGACATTTGAAATCTGTAC+AGG + chr7_3:77435687-77435706 Msa1125960:intron 35.0%
GAGAAGCAGTTGATTGTAAA+AGG + chr7_3:77435996-77436015 Msa1125960:CDS 35.0%
!! ACCAACTTTGGTGATGAAAT+TGG + chr7_3:77436101-77436120 Msa1125960:CDS 35.0%
ACCAATTTCATCACCAAAGT+TGG - chr7_3:77436105-77436124 None:intergenic 35.0%
TGACAACCAGTTTGAGAAAA+GGG - chr7_3:77436141-77436160 None:intergenic 35.0%
ATGACAACCAGTTTGAGAAA+AGG - chr7_3:77436142-77436161 None:intergenic 35.0%
ATGCTGATCACTGCATTAAA+AGG - chr7_3:77436668-77436687 None:intergenic 35.0%
AAATTGCTGAAAAACGAAGC+GGG - chr7_3:77434983-77435002 None:intergenic 35.0%
CAAATTGCTGAAAAACGAAG+CGG - chr7_3:77434984-77435003 None:intergenic 35.0%
TTCAAGATACTATCAGACAC+CGG + chr7_3:77435483-77435502 Msa1125960:intron 35.0%
!! CTATAATTTTTAGGAGCGGA+AGG - chr7_3:77435611-77435630 None:intergenic 35.0%
CTTCCGCTCCTAAAAATTAT+AGG + chr7_3:77435609-77435628 Msa1125960:intron 35.0%
! GAGACATTTGAAATCTGTAC+AGG + chr7_3:77435687-77435706 Msa1125960:intron 35.0%
GAGAAGCAGTTGATTGTAAA+AGG + chr7_3:77435996-77436015 Msa1125960:CDS 35.0%
!! ACCAACTTTGGTGATGAAAT+TGG + chr7_3:77436101-77436120 Msa1125960:CDS 35.0%
ACCAATTTCATCACCAAAGT+TGG - chr7_3:77436105-77436124 None:intergenic 35.0%
TGACAACCAGTTTGAGAAAA+GGG - chr7_3:77436141-77436160 None:intergenic 35.0%
ATGACAACCAGTTTGAGAAA+AGG - chr7_3:77436142-77436161 None:intergenic 35.0%
ATGCTGATCACTGCATTAAA+AGG - chr7_3:77436668-77436687 None:intergenic 35.0%
!! TACAGTAGAAGGTTCTGGAA+AGG + chr7_3:77434906-77434925 Msa1125960:five_prime_UTR 40.0%
!! GAAGGTTCTGGAAAGGAAAA+AGG + chr7_3:77434913-77434932 Msa1125960:five_prime_UTR 40.0%
GGATAGAATACTACGTAGCA+CGG - chr7_3:77435535-77435554 None:intergenic 40.0%
! GAACTGTTGCCCTTTTATGT+CGG + chr7_3:77435903-77435922 Msa1125960:CDS 40.0%
ACCCTTCTTCCGACATAAAA+GGG - chr7_3:77435915-77435934 None:intergenic 40.0%
AACCCTTCTTCCGACATAAA+AGG - chr7_3:77435916-77435935 None:intergenic 40.0%
ACAATCAACTGCTTCTCATC+TGG - chr7_3:77435993-77436012 None:intergenic 40.0%
AAAACTTGTAAGAGGAGCAG+GGG - chr7_3:77436027-77436046 None:intergenic 40.0%
CAAAACTTGTAAGAGGAGCA+GGG - chr7_3:77436028-77436047 None:intergenic 40.0%
ACAAAACTTGTAAGAGGAGC+AGG - chr7_3:77436029-77436048 None:intergenic 40.0%
AGTCCATCAAAGCTGAGTTA+TGG + chr7_3:77436078-77436097 Msa1125960:CDS 40.0%
TTGCAAGCTGACATAGCTTA+TGG - chr7_3:77436310-77436329 None:intergenic 40.0%
AAGCTATGTCAGCTTGCAAA+TGG + chr7_3:77436311-77436330 Msa1125960:CDS 40.0%
AGGAGACATTACTGTTGTGT+TGG + chr7_3:77436420-77436439 Msa1125960:three_prime_UTR 40.0%
!! TACAGTAGAAGGTTCTGGAA+AGG + chr7_3:77434906-77434925 Msa1125960:five_prime_UTR 40.0%
!! GAAGGTTCTGGAAAGGAAAA+AGG + chr7_3:77434913-77434932 Msa1125960:five_prime_UTR 40.0%
GGATAGAATACTACGTAGCA+CGG - chr7_3:77435535-77435554 None:intergenic 40.0%
! GAACTGTTGCCCTTTTATGT+CGG + chr7_3:77435903-77435922 Msa1125960:CDS 40.0%
ACCCTTCTTCCGACATAAAA+GGG - chr7_3:77435915-77435934 None:intergenic 40.0%
AACCCTTCTTCCGACATAAA+AGG - chr7_3:77435916-77435935 None:intergenic 40.0%
ACAATCAACTGCTTCTCATC+TGG - chr7_3:77435993-77436012 None:intergenic 40.0%
AAAACTTGTAAGAGGAGCAG+GGG - chr7_3:77436027-77436046 None:intergenic 40.0%
CAAAACTTGTAAGAGGAGCA+GGG - chr7_3:77436028-77436047 None:intergenic 40.0%
ACAAAACTTGTAAGAGGAGC+AGG - chr7_3:77436029-77436048 None:intergenic 40.0%
AGTCCATCAAAGCTGAGTTA+TGG + chr7_3:77436078-77436097 Msa1125960:CDS 40.0%
TTGCAAGCTGACATAGCTTA+TGG - chr7_3:77436310-77436329 None:intergenic 40.0%
AAGCTATGTCAGCTTGCAAA+TGG + chr7_3:77436311-77436330 Msa1125960:CDS 40.0%
AGGAGACATTACTGTTGTGT+TGG + chr7_3:77436420-77436439 Msa1125960:three_prime_UTR 40.0%
AACCTTCTACTGTACTCCTC+TGG - chr7_3:77434900-77434919 None:intergenic 45.0%
! AGGAGTACAGTAGAAGGTTC+TGG + chr7_3:77434901-77434920 Msa1125960:five_prime_UTR 45.0%
TGAAAAACGAAGCGGGAGAT+TGG - chr7_3:77434976-77434995 None:intergenic 45.0%
ACACAAAAGAACACGGAGCA+AGG - chr7_3:77435125-77435144 None:intergenic 45.0%
ATGTGACATTGTCAGTGCTG+CGG - chr7_3:77435395-77435414 None:intergenic 45.0%
TAACATGACACTGATGCACG+TGG - chr7_3:77435462-77435481 None:intergenic 45.0%
CTTCAAATCGAAGGCTTGTC+CGG - chr7_3:77435509-77435528 None:intergenic 45.0%
GCACGGATACTTCAAATCGA+AGG - chr7_3:77435518-77435537 None:intergenic 45.0%
! GCAACAGTTCTGCATTGACA+AGG - chr7_3:77435893-77435912 None:intergenic 45.0%
! TGCCCTTTTATGTCGGAAGA+AGG + chr7_3:77435910-77435929 Msa1125960:CDS 45.0%
! GCCCTTTTATGTCGGAAGAA+GGG + chr7_3:77435911-77435930 Msa1125960:CDS 45.0%
AAACTTGTAAGAGGAGCAGG+GGG - chr7_3:77436026-77436045 None:intergenic 45.0%
! GGTCCATAACTCAGCTTTGA+TGG - chr7_3:77436084-77436103 None:intergenic 45.0%
GCTGAGTTATGGACCAACTT+TGG + chr7_3:77436089-77436108 Msa1125960:CDS 45.0%
! CTTGCTGTAACTCAACTCAC+AGG - chr7_3:77436355-77436374 None:intergenic 45.0%
AACCTTCTACTGTACTCCTC+TGG - chr7_3:77434900-77434919 None:intergenic 45.0%
! AGGAGTACAGTAGAAGGTTC+TGG + chr7_3:77434901-77434920 Msa1125960:five_prime_UTR 45.0%
TGAAAAACGAAGCGGGAGAT+TGG - chr7_3:77434976-77434995 None:intergenic 45.0%
ACACAAAAGAACACGGAGCA+AGG - chr7_3:77435125-77435144 None:intergenic 45.0%
ATGTGACATTGTCAGTGCTG+CGG - chr7_3:77435395-77435414 None:intergenic 45.0%
TAACATGACACTGATGCACG+TGG - chr7_3:77435462-77435481 None:intergenic 45.0%
CTTCAAATCGAAGGCTTGTC+CGG - chr7_3:77435509-77435528 None:intergenic 45.0%
GCACGGATACTTCAAATCGA+AGG - chr7_3:77435518-77435537 None:intergenic 45.0%
! GCAACAGTTCTGCATTGACA+AGG - chr7_3:77435893-77435912 None:intergenic 45.0%
! TGCCCTTTTATGTCGGAAGA+AGG + chr7_3:77435910-77435929 Msa1125960:CDS 45.0%
! GCCCTTTTATGTCGGAAGAA+GGG + chr7_3:77435911-77435930 Msa1125960:CDS 45.0%
AAACTTGTAAGAGGAGCAGG+GGG - chr7_3:77436026-77436045 None:intergenic 45.0%
! GGTCCATAACTCAGCTTTGA+TGG - chr7_3:77436084-77436103 None:intergenic 45.0%
GCTGAGTTATGGACCAACTT+TGG + chr7_3:77436089-77436108 Msa1125960:CDS 45.0%
! CTTGCTGTAACTCAACTCAC+AGG - chr7_3:77436355-77436374 None:intergenic 45.0%
! GACCAGAGGAGTACAGTAGA+AGG + chr7_3:77434895-77434914 Msa1125960:five_prime_UTR 50.0%
AACACGGAGCAAGGAGAAAC+TGG - chr7_3:77435116-77435135 None:intergenic 50.0%
TGTGACATTGTCAGTGCTGC+GGG - chr7_3:77435394-77435413 None:intergenic 50.0%
AGATACTATCAGACACCGGC+CGG + chr7_3:77435487-77435506 Msa1125960:intron 50.0%
ACAAGGACTGCAGGGCTTAA+TGG - chr7_3:77435876-77435895 None:intergenic 50.0%
! CTGCATTGACAAGGACTGCA+GGG - chr7_3:77435884-77435903 None:intergenic 50.0%
! TCTGCATTGACAAGGACTGC+AGG - chr7_3:77435885-77435904 None:intergenic 50.0%
AAGGGTTCGTACAGTGATGC+AGG + chr7_3:77435929-77435948 Msa1125960:CDS 50.0%
TCTGACGCTCTAGCTGTCAT+TGG + chr7_3:77435960-77435979 Msa1125960:CDS 50.0%
! GACCAGAGGAGTACAGTAGA+AGG + chr7_3:77434895-77434914 Msa1125960:five_prime_UTR 50.0%
AACACGGAGCAAGGAGAAAC+TGG - chr7_3:77435116-77435135 None:intergenic 50.0%
TGTGACATTGTCAGTGCTGC+GGG - chr7_3:77435394-77435413 None:intergenic 50.0%
AGATACTATCAGACACCGGC+CGG + chr7_3:77435487-77435506 Msa1125960:intron 50.0%
ACAAGGACTGCAGGGCTTAA+TGG - chr7_3:77435876-77435895 None:intergenic 50.0%
! CTGCATTGACAAGGACTGCA+GGG - chr7_3:77435884-77435903 None:intergenic 50.0%
! TCTGCATTGACAAGGACTGC+AGG - chr7_3:77435885-77435904 None:intergenic 50.0%
AAGGGTTCGTACAGTGATGC+AGG + chr7_3:77435929-77435948 Msa1125960:CDS 50.0%
TCTGACGCTCTAGCTGTCAT+TGG + chr7_3:77435960-77435979 Msa1125960:CDS 50.0%
GAGACGAGAGAGTAGAGCGA+GGG - chr7_3:77434945-77434964 None:intergenic 55.0%
AAATCGAAGGCTTGTCCGGC+CGG - chr7_3:77435505-77435524 None:intergenic 55.0%
GAGACGAGAGAGTAGAGCGA+GGG - chr7_3:77434945-77434964 None:intergenic 55.0%
AAATCGAAGGCTTGTCCGGC+CGG - chr7_3:77435505-77435524 None:intergenic 55.0%
CGAGACGAGAGAGTAGAGCG+AGG - chr7_3:77434946-77434965 None:intergenic 60.0%
CGAGACGAGAGAGTAGAGCG+AGG - chr7_3:77434946-77434965 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 77434890 77436748 77434890 ID=Msa1125960;Name=Msa1125960
chr7_3 mRNA 77434890 77436748 77434890 ID=Msa1125960-mRNA-1;Parent=Msa1125960;Name=Msa1125960-mRNA-1;_AED=0.03;_eAED=0.03;_QI=140|1|1|1|0.5|0.33|3|390|106
chr7_3 exon 77434890 77435026 77434890 ID=Msa1125960-mRNA-1:exon:21346;Parent=Msa1125960-mRNA-1
chr7_3 exon 77435864 77436122 77435864 ID=Msa1125960-mRNA-1:exon:21347;Parent=Msa1125960-mRNA-1
chr7_3 exon 77436294 77436748 77436294 ID=Msa1125960-mRNA-1:exon:21348;Parent=Msa1125960-mRNA-1
chr7_3 five_prime_UTR 77434890 77435026 77434890 ID=Msa1125960-mRNA-1:five_prime_utr;Parent=Msa1125960-mRNA-1
chr7_3 five_prime_UTR 77435864 77435866 77435864 ID=Msa1125960-mRNA-1:five_prime_utr;Parent=Msa1125960-mRNA-1
chr7_3 CDS 77435867 77436122 77435867 ID=Msa1125960-mRNA-1:cds;Parent=Msa1125960-mRNA-1
chr7_3 CDS 77436294 77436358 77436294 ID=Msa1125960-mRNA-1:cds;Parent=Msa1125960-mRNA-1
chr7_3 three_prime_UTR 77436359 77436748 77436359 ID=Msa1125960-mRNA-1:three_prime_utr;Parent=Msa1125960-mRNA-1
Gene Sequence

>Msa1125960

ATGGATCCATTAAGCCCTGCAGTCCTTGTCAATGCAGAACTGTTGCCCTTTTATGTCGGAAGAAGGGTTCGTACAGTGATGCAGGTTGTGCGATCTGACGCTCTAGCTGTCATTGGAAAATCACCAGATGAGAAGCAGTTGATTGTAAAAGGATCACCCCCTGCTCCTCTTACAAGTTTTGTAGAAGTTATTGGTATTGTTAACAGTGACAAGTCCATCAAAGCTGAGTTATGGACCAACTTTGGTGATGAAATTGATATGCTCAGCTACCATAAGCTATGTCAGCTTGCAAATGGAGAATTTAAACACTTGTTCCTGTGA
Protein sequence

>Msa1125960

MDPLSPAVLVNAELLPFYVGRRVRTVMQVVRSDALAVIGKSPDEKQLIVKGSPPAPLTSFVEVIGIVNSDKSIKAELWTNFGDEIDMLSYHKLCQLANGEFKHLFL*