AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0710940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0710940 MtrunA17_Chr5g0393641 97.980 99 2 0 130 228 125 223 9.38e-26 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 146 sgRNAs with CRISPR-Local

Find 381 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGATGGTTGGATTAGTATT+TGG 0.211086 5_1:-2835547 Msa0710940:CDS
GAGAATGGTGGAGGTGAGGC+AGG 0.243796 5_1:+2836310 None:intergenic
GGTGGTGCTGGAGATGAGTT+TGG 0.260123 5_1:+2836583 None:intergenic
CGTTTGTGACATTCCATTAT+CGG 0.278164 5_1:-2836986 Msa0710940:five_prime_UTR
GGAGGAGTGAGTGGGGTTGG+AGG 0.298635 5_1:+2836370 None:intergenic
CTCACTGTGATAACCGATAA+TGG 0.317247 5_1:+2836973 None:intergenic
GGGAGGTGGATGGAGCTTGT+TGG 0.323002 5_1:+2836605 None:intergenic
GTGGTGCTGGAGATGAGTTT+GGG 0.326325 5_1:+2836584 None:intergenic
TACATACATAATTACATATA+CGG 0.335636 5_1:-2836898 Msa0710940:five_prime_UTR
ATTCTTGAGACATTCATTTC+AGG 0.339733 5_1:-2835387 Msa0710940:three_prime_UTR
GTTGCTGGAGGTGGAGTTGC+GGG 0.342550 5_1:+2836265 None:intergenic
GGGGAGGCTTGAGGAGTGGT+TGG 0.345280 5_1:+2836538 None:intergenic
AGTGGACTGAGCTGGTGGAG+GGG 0.345641 5_1:+2836456 None:intergenic
GGAGGTGGATGGAGCTTGTT+GGG 0.351801 5_1:+2836606 None:intergenic
GTTGCGGGAGGTGGAGTAGC+AGG 0.362408 5_1:+2836280 None:intergenic
GGAGGTGGAGTTGCGGGAGG+TGG 0.365057 5_1:+2836271 None:intergenic
GGGCACACATCATATAGTTT+TGG 0.373727 5_1:-2836668 Msa0710940:CDS
TGGAGATGAGTTTGGGGAGG+TGG 0.375955 5_1:+2836591 None:intergenic
TGGCATGGGAGAGGTTAAAT+AGG 0.377498 5_1:+2836862 None:intergenic
GGTGGAGGAGTGAGTGGGGT+TGG 0.384797 5_1:+2836367 None:intergenic
GGAGTGGACTGAGCTGGTGG+AGG 0.388176 5_1:+2836454 None:intergenic
CTCTTAAGCTTGGCAGGAGC+GGG 0.396891 5_1:+2836184 None:intergenic
ATATAACCTGCGCATGCAAC+TGG 0.397299 5_1:+2836755 None:intergenic
GGAGGAGGAGATTGCTGAAC+TGG 0.403376 5_1:+2836388 None:intergenic
GAGATTAAGCTGGAAATGTT+TGG 0.403651 5_1:-2836953 Msa0710940:five_prime_UTR
GACTTAAGAGTTTGTTGGCA+TGG 0.408106 5_1:+2836847 None:intergenic
GGTGGAGGGGAGGACTGAAC+TGG 0.408526 5_1:+2836469 None:intergenic
AATGGTGGAGGTGAGGCAGG+GGG 0.411793 5_1:+2836313 None:intergenic
GGAGTGAGTGGGGTTGGAGG+AGG 0.412037 5_1:+2836373 None:intergenic
AGAGAAGAGAGTCCGGGAGC+GGG 0.413239 5_1:+2836118 None:intergenic
GAGTGGACTGAGCTGGTGGA+GGG 0.415952 5_1:+2836455 None:intergenic
GGTGTATTAGCAGGAGGAGT+GGG 0.419095 5_1:+2836562 None:intergenic
GCTTTACTCTTAAGCTTGGC+AGG 0.421108 5_1:+2836178 None:intergenic
GCAGGAGGAGTGGGTGGTGC+TGG 0.425989 5_1:+2836571 None:intergenic
TTGAAGACTTAAGAGTTTGT+TGG 0.426651 5_1:+2836842 None:intergenic
AGCTTGGCAGGAGCGGGAGC+TGG 0.429818 5_1:+2836190 None:intergenic
GAGGCTTGAGGAGTGGTTGG+AGG 0.431331 5_1:+2836541 None:intergenic
AGCTTGTTGGGCTCCTACGC+TGG 0.431825 5_1:+2836618 None:intergenic
GTGGTTGGAGGTGTATTAGC+AGG 0.434184 5_1:+2836553 None:intergenic
AGAAGATTGAACAGGTGGAG+GGG 0.439354 5_1:+2836519 None:intergenic
GAATGGTGGAGGTGAGGCAG+GGG 0.448327 5_1:+2836312 None:intergenic
ACTGGTGGTGGAGCGGATAC+AGG 0.448600 5_1:+2836406 None:intergenic
TTCTTGAGACATTCATTTCA+GGG 0.448618 5_1:-2835386 Msa0710940:three_prime_UTR
AGGAGAGAATGGTGGAGGTG+AGG 0.448761 5_1:+2836306 None:intergenic
GCGGGAGCTGGAGTAGTTGC+TGG 0.452629 5_1:+2836202 None:intergenic
GAGAAGATTGAACAGGTGGA+GGG 0.453077 5_1:+2836518 None:intergenic
ATAAACATGGTTGTGGTAAA+GGG 0.460444 5_1:+2835141 None:intergenic
GGAGGAGGAGTTGCTGGAGG+TGG 0.464095 5_1:+2836256 None:intergenic
CCATCAGATGCTCCCGCTCC+CGG 0.465627 5_1:-2836130 Msa0710940:CDS
AGTACCAGATGGAGAGATAG+AGG 0.465651 5_1:+2836090 None:intergenic
GGAGAAGATTGAACAGGTGG+AGG 0.466956 5_1:+2836517 None:intergenic
GATGAGTTTGGGGAGGTGGA+TGG 0.470184 5_1:+2836595 None:intergenic
AGAGTACAGGTGCCAATGTA+GGG 0.471479 5_1:+2836155 None:intergenic
AGAATGGTGGAGGTGAGGCA+GGG 0.471635 5_1:+2836311 None:intergenic
AGGTTAAATAGGCAGGATAT+AGG 0.475253 5_1:+2836873 None:intergenic
GGAGTAGGTGTGAGTGCCGG+AGG 0.481269 5_1:+2836238 None:intergenic
ATAAATCAAGACAATTAAGA+TGG 0.490920 5_1:-2836689 Msa0710940:exon
GCGGGAGGTGGAGTAGCAGG+GGG 0.491257 5_1:+2836283 None:intergenic
AGTGCCGGAGGAGGAGTTGC+TGG 0.491583 5_1:+2836250 None:intergenic
ACTTAAGAGTTTGTTGGCAT+GGG 0.492063 5_1:+2836848 None:intergenic
GAGAGTACAGGTGCCAATGT+AGG 0.499124 5_1:+2836154 None:intergenic
ACCTCCAGCAACTCCTCCTC+CGG 0.499715 5_1:-2836254 Msa0710940:CDS
GCATCTGATGGCGAGAGTAC+AGG 0.502597 5_1:+2836142 None:intergenic
GGAGAAGACTGAACGGGAGG+GGG 0.504581 5_1:+2836433 None:intergenic
GGGGAGAGAGAAGAGAGTCC+GGG 0.504838 5_1:+2836112 None:intergenic
GGGGAGGACTGAACTGGAGG+TGG 0.505376 5_1:+2836475 None:intergenic
AGTTGCTGGCGGAGATGAGA+GGG 0.506221 5_1:+2836216 None:intergenic
ACGTGGGGAGACTCTACAAC+AGG 0.507489 5_1:-2835200 Msa0710940:three_prime_UTR
GAAGTTGTGGTCACATAAGA+TGG 0.507746 5_1:-2835563 Msa0710940:CDS
GGAGAAGACTGCACGGGTGG+AGG 0.508426 5_1:+2836496 None:intergenic
TGCGGGAGGTGGAGTAGCAG+GGG 0.516905 5_1:+2836282 None:intergenic
CGATCTAGAACAGCAAGTAC+AGG 0.517402 5_1:+2835515 None:intergenic
GGACTGAGCTGGTGGAGGGG+AGG 0.519909 5_1:+2836459 None:intergenic
TGGAGGGGAGGCTTGAGGAG+TGG 0.522970 5_1:+2836534 None:intergenic
TTTACGTAGTTCTGTAACGT+GGG 0.527539 5_1:-2835216 Msa0710940:three_prime_UTR
AGAGTTTGTTGGCATGGGAG+AGG 0.528931 5_1:+2836853 None:intergenic
AACCTGCGCATGCAACTGGC+AGG 0.529095 5_1:+2836759 None:intergenic
GAGAGAAGAGAGTCCGGGAG+CGG 0.529145 5_1:+2836117 None:intergenic
GGAGGGGAGGACTGAACTGG+AGG 0.529701 5_1:+2836472 None:intergenic
TGGTGCTGGAGATGAGTTTG+GGG 0.531907 5_1:+2836585 None:intergenic
ATGGGAGAGGTTAAATAGGC+AGG 0.534071 5_1:+2836866 None:intergenic
GAGAAAATAATAATATATAG+AGG 0.534434 5_1:+2835451 None:intergenic
AGGAGAAGACTGAACGGGAG+GGG 0.536416 5_1:+2836432 None:intergenic
GGTGGAGAAGACTGCACGGG+TGG 0.537106 5_1:+2836493 None:intergenic
AAAAGAAAGCAACGAATGGA+TGG 0.538134 5_1:+2835304 None:intergenic
GGCGGAGATGAGAGGGGAGT+AGG 0.538476 5_1:+2836223 None:intergenic
GGAGGAGAAGATTGAACAGG+TGG 0.538673 5_1:+2836514 None:intergenic
GGAGGAGAAGACTGAACGGG+AGG 0.539000 5_1:+2836430 None:intergenic
GGTGGAGGAGAAGACTGAAC+GGG 0.540730 5_1:+2836427 None:intergenic
TTGTGGTCACATAAGATGGT+TGG 0.542769 5_1:-2835559 Msa0710940:CDS
ACTCTTAAGCTTGGCAGGAG+CGG 0.544295 5_1:+2836183 None:intergenic
TTGCGGGAGGTGGAGTAGCA+GGG 0.544392 5_1:+2836281 None:intergenic
GGTGGAGGAGAAGATTGAAC+AGG 0.545453 5_1:+2836511 None:intergenic
AGTTGCTGGAGGTGGAGTTG+CGG 0.545853 5_1:+2836264 None:intergenic
GGATCCACCAGGGGTGAAAG+AGG 0.546166 5_1:-2837031 None:intergenic
GTAGGTGTGAGTGCCGGAGG+AGG 0.548715 5_1:+2836241 None:intergenic
AGGTGTATTAGCAGGAGGAG+TGG 0.554875 5_1:+2836561 None:intergenic
GGTGGTGGAGTAGACTGAAC+AGG 0.557587 5_1:+2836346 None:intergenic
TGAACAGGTGGAGGAGTGAG+TGG 0.558370 5_1:+2836361 None:intergenic
GAGGAGAAGACTGAACGGGA+GGG 0.560092 5_1:+2836431 None:intergenic
TGCTGGAGATGAGTTTGGGG+AGG 0.562310 5_1:+2836588 None:intergenic
TTATCACAGTGAGATTAAGC+TGG 0.562741 5_1:-2836963 Msa0710940:five_prime_UTR
GTACCAGATGGAGAGATAGA+GGG 0.566886 5_1:+2836091 None:intergenic
TGAGACATTCATTTCAGGGG+AGG 0.568142 5_1:-2835382 Msa0710940:three_prime_UTR
ACAATGACCTCTTTCACCCC+TGG 0.570301 5_1:+2837024 None:intergenic
GCTGGAGGTGGAGTTGCGGG+AGG 0.571892 5_1:+2836268 None:intergenic
AGGGGCTTTACTCTTAAGCT+TGG 0.573619 5_1:+2836174 None:intergenic
AGGGGAGTAGGTGTGAGTGC+CGG 0.575858 5_1:+2836235 None:intergenic
CCGGGAGCGGGAGCATCTGA+TGG 0.577356 5_1:+2836130 None:intergenic
TACCAGATGGAGAGATAGAG+GGG 0.577669 5_1:+2836092 None:intergenic
GTTGGAGGTGTATTAGCAGG+AGG 0.581176 5_1:+2836556 None:intergenic
TAAATCAAGACAATTAAGAT+GGG 0.584084 5_1:-2836688 Msa0710940:exon
ACAGGTGGAGGGGAGGCTTG+AGG 0.584481 5_1:+2836529 None:intergenic
GGAGATTGCTGAACTGGTGG+TGG 0.584891 5_1:+2836394 None:intergenic
ATGACCTCTTTCACCCCTGG+TGG 0.588469 5_1:+2837027 None:intergenic
TAGTTGCTGGCGGAGATGAG+AGG 0.590762 5_1:+2836215 None:intergenic
ATTCAAAAGAAAGCAACGAA+TGG 0.591030 5_1:+2835300 None:intergenic
AGATTGAACAGGTGGAGGGG+AGG 0.591929 5_1:+2836522 None:intergenic
GAACAGGTGGAGGAGTGAGT+GGG 0.591944 5_1:+2836362 None:intergenic
GGTGGAGCGGATACAGGTGG+AGG 0.597066 5_1:+2836412 None:intergenic
GGAGTAGACTGAACAGGTGG+AGG 0.602159 5_1:+2836352 None:intergenic
TAAGAGTAAAGCCCCTACAT+TGG 0.608658 5_1:-2836167 Msa0710940:CDS
GGTGGTGGAGCGGATACAGG+TGG 0.611309 5_1:+2836409 None:intergenic
TCTTGAGACATTCATTTCAG+GGG 0.612581 5_1:-2835385 Msa0710940:three_prime_UTR
CTTACATCATCAGTACCAGA+TGG 0.612844 5_1:+2836079 None:intergenic
GCCGGAGGAGGAGTTGCTGG+AGG 0.626597 5_1:+2836253 None:intergenic
AGGTGGAGGAGAAGACTGAA+CGG 0.627967 5_1:+2836426 None:intergenic
GTATTAGCAGGAGGAGTGGG+TGG 0.629272 5_1:+2836565 None:intergenic
ATTTACGTAGTTCTGTAACG+TGG 0.629666 5_1:-2835217 Msa0710940:three_prime_UTR
GACCTGCCAGTTGCATGCGC+AGG 0.636482 5_1:-2836761 Msa0710940:five_prime_UTR
TGAGGCAGTGGGATCCACCA+GGG 0.639800 5_1:-2837041 None:intergenic
TGGAGGTGGAGAAGACTGCA+CGG 0.644717 5_1:+2836489 None:intergenic
GGAGGTGGAGAAGACTGCAC+GGG 0.646719 5_1:+2836490 None:intergenic
AGAGTGGGGCAGAGAAGTTG+TGG 0.650807 5_1:-2835576 Msa0710940:CDS
GAGTACAGGTGCCAATGTAG+GGG 0.651058 5_1:+2836156 None:intergenic
GGAGGAGATTGCTGAACTGG+TGG 0.653228 5_1:+2836391 None:intergenic
ATGTATATATCATGATCATG+AGG 0.655894 5_1:+2836916 None:intergenic
GAGTTCTGAAGAGAAGACAG+AGG 0.658474 5_1:+2835489 None:intergenic
GAGGCAGTGGGATCCACCAG+GGG 0.660048 5_1:-2837040 None:intergenic
AACAGGTGGAGGAGTGAGTG+GGG 0.663660 5_1:+2836363 None:intergenic
GGAGCTGGAGTAGTTGCTGG+CGG 0.665527 5_1:+2836205 None:intergenic
ACCAGATGGAGAGATAGAGG+GGG 0.666744 5_1:+2836093 None:intergenic
TTGCTGAACTGGTGGTGGAG+CGG 0.669656 5_1:+2836399 None:intergenic
GGTGGAGTAGACTGAACAGG+TGG 0.681346 5_1:+2836349 None:intergenic
GTTGCTGGCGGAGATGAGAG+GGG 0.685759 5_1:+2836217 None:intergenic
TTACGTAGTTCTGTAACGTG+GGG 0.688815 5_1:-2835215 Msa0710940:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAATATTAATATGACA+TGG + chr5_1:2836234-2836253 None:intergenic 10.0%
!!! TTAAACATGTTTTTTTAATT+AGG + chr5_1:2836449-2836468 None:intergenic 10.0%
!! TAAAAAATATTAATATGACA+TGG + chr5_1:2836234-2836253 None:intergenic 10.0%
!!! TTAAACATGTTTTTTTAATT+AGG + chr5_1:2836449-2836468 None:intergenic 10.0%
!! TACATACATAATTACATATA+CGG - chr5_1:2835284-2835303 Msa0710940:three_prime_UTR 15.0%
!! AAAATCAAATTGTAAAGTAA+CGG - chr5_1:2836205-2836224 Msa0710940:CDS 15.0%
!! GAGAAAATAATAATATATAG+AGG + chr5_1:2836734-2836753 None:intergenic 15.0%
!! TACATACATAATTACATATA+CGG - chr5_1:2835284-2835303 Msa0710940:three_prime_UTR 15.0%
!! AAAATCAAATTGTAAAGTAA+CGG - chr5_1:2836205-2836224 Msa0710940:CDS 15.0%
!! GAGAAAATAATAATATATAG+AGG + chr5_1:2836734-2836753 None:intergenic 15.0%
!! ATAAATCAAGACAATTAAGA+TGG - chr5_1:2835493-2835512 Msa0710940:three_prime_UTR 20.0%
!! TAAATCAAGACAATTAAGAT+GGG - chr5_1:2835494-2835513 Msa0710940:three_prime_UTR 20.0%
!!! ACTAACTAGGTTTTTAATAT+TGG - chr5_1:2836165-2836184 Msa0710940:CDS 20.0%
!!! CTTTACAATTTGATTTTGTA+AGG + chr5_1:2836202-2836221 None:intergenic 20.0%
!! AAATCAAATTGTAAAGTAAC+GGG - chr5_1:2836206-2836225 Msa0710940:CDS 20.0%
!!! TGGTATTTTCAATACTAATA+AGG - chr5_1:2836323-2836342 Msa0710940:CDS 20.0%
!! TTTGGAGATCAAATATATTT+CGG - chr5_1:2836399-2836418 Msa0710940:CDS 20.0%
!!! CATGTTTTTTTAATTAGGAA+AGG + chr5_1:2836444-2836463 None:intergenic 20.0%
!! AATAGATAAAGTAGAAGAAA+AGG + chr5_1:2836490-2836509 None:intergenic 20.0%
!!! TTAGACTAATTAAGTTTTGT+GGG - chr5_1:2836565-2836584 Msa0710940:CDS 20.0%
!!! ACAACTTAGTTTTAATCTAA+TGG + chr5_1:2837010-2837029 None:intergenic 20.0%
!! ATAAATCAAGACAATTAAGA+TGG - chr5_1:2835493-2835512 Msa0710940:three_prime_UTR 20.0%
!! TAAATCAAGACAATTAAGAT+GGG - chr5_1:2835494-2835513 Msa0710940:three_prime_UTR 20.0%
!!! ACTAACTAGGTTTTTAATAT+TGG - chr5_1:2836165-2836184 Msa0710940:CDS 20.0%
!!! CTTTACAATTTGATTTTGTA+AGG + chr5_1:2836202-2836221 None:intergenic 20.0%
!! AAATCAAATTGTAAAGTAAC+GGG - chr5_1:2836206-2836225 Msa0710940:CDS 20.0%
!!! TGGTATTTTCAATACTAATA+AGG - chr5_1:2836323-2836342 Msa0710940:CDS 20.0%
!! TTTGGAGATCAAATATATTT+CGG - chr5_1:2836399-2836418 Msa0710940:CDS 20.0%
!!! CATGTTTTTTTAATTAGGAA+AGG + chr5_1:2836444-2836463 None:intergenic 20.0%
!! AATAGATAAAGTAGAAGAAA+AGG + chr5_1:2836490-2836509 None:intergenic 20.0%
!!! TTAGACTAATTAAGTTTTGT+GGG - chr5_1:2836565-2836584 Msa0710940:CDS 20.0%
!!! ACAACTTAGTTTTAATCTAA+TGG + chr5_1:2837010-2837029 None:intergenic 20.0%
! ATGTATATATCATGATCATG+AGG + chr5_1:2835269-2835288 None:intergenic 25.0%
! ATCACTACTAATTACTAACT+AGG - chr5_1:2836152-2836171 Msa0710940:CDS 25.0%
! TTGATATGAGTCAAACTAAA+GGG + chr5_1:2836372-2836391 None:intergenic 25.0%
! TTTGATATGAGTCAAACTAA+AGG + chr5_1:2836373-2836392 None:intergenic 25.0%
!!! ACTCATATCAAAGCTTTATT+TGG - chr5_1:2836381-2836400 Msa0710940:CDS 25.0%
! AGATCAAATATATTTCGGTT+CGG - chr5_1:2836404-2836423 Msa0710940:CDS 25.0%
!! GTTAGACTAATTAAGTTTTG+TGG - chr5_1:2836564-2836583 Msa0710940:CDS 25.0%
!! ATTATTTTCTCGATGTGATA+TGG - chr5_1:2836743-2836762 Msa0710940:five_prime_UTR 25.0%
!! TTATTTTCTCGATGTGATAT+GGG - chr5_1:2836744-2836763 Msa0710940:five_prime_UTR 25.0%
! ATGTATATATCATGATCATG+AGG + chr5_1:2835269-2835288 None:intergenic 25.0%
! ATCACTACTAATTACTAACT+AGG - chr5_1:2836152-2836171 Msa0710940:CDS 25.0%
! TTGATATGAGTCAAACTAAA+GGG + chr5_1:2836372-2836391 None:intergenic 25.0%
! TTTGATATGAGTCAAACTAA+AGG + chr5_1:2836373-2836392 None:intergenic 25.0%
!!! ACTCATATCAAAGCTTTATT+TGG - chr5_1:2836381-2836400 Msa0710940:CDS 25.0%
! AGATCAAATATATTTCGGTT+CGG - chr5_1:2836404-2836423 Msa0710940:CDS 25.0%
!! GTTAGACTAATTAAGTTTTG+TGG - chr5_1:2836564-2836583 Msa0710940:CDS 25.0%
!! ATTATTTTCTCGATGTGATA+TGG - chr5_1:2836743-2836762 Msa0710940:five_prime_UTR 25.0%
!! TTATTTTCTCGATGTGATAT+GGG - chr5_1:2836744-2836763 Msa0710940:five_prime_UTR 25.0%
TTGAAGACTTAAGAGTTTGT+TGG + chr5_1:2835343-2835362 None:intergenic 30.0%
TGATATGAGTCAAACTAAAG+GGG + chr5_1:2836371-2836390 None:intergenic 30.0%
TATTATATTGCATTGCAGAG+TGG - chr5_1:2836590-2836609 Msa0710940:CDS 30.0%
ATTATATTGCATTGCAGAGT+GGG - chr5_1:2836591-2836610 Msa0710940:CDS 30.0%
!! AAGATGGTTGGATTAGTATT+TGG - chr5_1:2836635-2836654 Msa0710940:CDS 30.0%
ATTCTTGAGACATTCATTTC+AGG - chr5_1:2836795-2836814 Msa0710940:five_prime_UTR 30.0%
TTCTTGAGACATTCATTTCA+GGG - chr5_1:2836796-2836815 Msa0710940:five_prime_UTR 30.0%
ATTCAAAAGAAAGCAACGAA+TGG + chr5_1:2836885-2836904 None:intergenic 30.0%
TTGAAGACTTAAGAGTTTGT+TGG + chr5_1:2835343-2835362 None:intergenic 30.0%
TGATATGAGTCAAACTAAAG+GGG + chr5_1:2836371-2836390 None:intergenic 30.0%
TATTATATTGCATTGCAGAG+TGG - chr5_1:2836590-2836609 Msa0710940:CDS 30.0%
ATTATATTGCATTGCAGAGT+GGG - chr5_1:2836591-2836610 Msa0710940:CDS 30.0%
!! AAGATGGTTGGATTAGTATT+TGG - chr5_1:2836635-2836654 Msa0710940:CDS 30.0%
ATTCTTGAGACATTCATTTC+AGG - chr5_1:2836795-2836814 Msa0710940:five_prime_UTR 30.0%
TTCTTGAGACATTCATTTCA+GGG - chr5_1:2836796-2836815 Msa0710940:five_prime_UTR 30.0%
ATTCAAAAGAAAGCAACGAA+TGG + chr5_1:2836885-2836904 None:intergenic 30.0%
CGTTTGTGACATTCCATTAT+CGG - chr5_1:2835196-2835215 Msa0710940:three_prime_UTR 35.0%
TTATCACAGTGAGATTAAGC+TGG - chr5_1:2835219-2835238 Msa0710940:three_prime_UTR 35.0%
GAGATTAAGCTGGAAATGTT+TGG - chr5_1:2835229-2835248 Msa0710940:three_prime_UTR 35.0%
AGGTTAAATAGGCAGGATAT+AGG + chr5_1:2835312-2835331 None:intergenic 35.0%
!! ACTTAAGAGTTTGTTGGCAT+GGG + chr5_1:2835337-2835356 None:intergenic 35.0%
!!! CACACATCATATAGTTTTGG+TGG - chr5_1:2835517-2835536 Msa0710940:exon 35.0%
!!! CATCATATAGTTTTGGTGGT+TGG - chr5_1:2835521-2835540 Msa0710940:CDS 35.0%
! TGATTTTGTAAGGACGTGTT+AGG + chr5_1:2836192-2836211 None:intergenic 35.0%
AAAGGGGTTGTGTATGATAT+GGG + chr5_1:2836355-2836374 None:intergenic 35.0%
TAAAGGGGTTGTGTATGATA+TGG + chr5_1:2836356-2836375 None:intergenic 35.0%
TTATATTGCATTGCAGAGTG+GGG - chr5_1:2836592-2836611 Msa0710940:CDS 35.0%
TCTTGAGACATTCATTTCAG+GGG - chr5_1:2836797-2836816 Msa0710940:five_prime_UTR 35.0%
!! GGGAGGTTTTGTATTAATTG+AGG - chr5_1:2836817-2836836 Msa0710940:five_prime_UTR 35.0%
AAAAGAAAGCAACGAATGGA+TGG + chr5_1:2836881-2836900 None:intergenic 35.0%
! ATTTACGTAGTTCTGTAACG+TGG - chr5_1:2836965-2836984 Msa0710940:five_prime_UTR 35.0%
! TTTACGTAGTTCTGTAACGT+GGG - chr5_1:2836966-2836985 Msa0710940:five_prime_UTR 35.0%
CGTTTGTGACATTCCATTAT+CGG - chr5_1:2835196-2835215 Msa0710940:three_prime_UTR 35.0%
TTATCACAGTGAGATTAAGC+TGG - chr5_1:2835219-2835238 Msa0710940:three_prime_UTR 35.0%
GAGATTAAGCTGGAAATGTT+TGG - chr5_1:2835229-2835248 Msa0710940:three_prime_UTR 35.0%
AGGTTAAATAGGCAGGATAT+AGG + chr5_1:2835312-2835331 None:intergenic 35.0%
!! ACTTAAGAGTTTGTTGGCAT+GGG + chr5_1:2835337-2835356 None:intergenic 35.0%
!!! CACACATCATATAGTTTTGG+TGG - chr5_1:2835517-2835536 Msa0710940:exon 35.0%
!!! CATCATATAGTTTTGGTGGT+TGG - chr5_1:2835521-2835540 Msa0710940:CDS 35.0%
! TGATTTTGTAAGGACGTGTT+AGG + chr5_1:2836192-2836211 None:intergenic 35.0%
AAAGGGGTTGTGTATGATAT+GGG + chr5_1:2836355-2836374 None:intergenic 35.0%
TAAAGGGGTTGTGTATGATA+TGG + chr5_1:2836356-2836375 None:intergenic 35.0%
TTATATTGCATTGCAGAGTG+GGG - chr5_1:2836592-2836611 Msa0710940:CDS 35.0%
TCTTGAGACATTCATTTCAG+GGG - chr5_1:2836797-2836816 Msa0710940:five_prime_UTR 35.0%
!! GGGAGGTTTTGTATTAATTG+AGG - chr5_1:2836817-2836836 Msa0710940:five_prime_UTR 35.0%
AAAAGAAAGCAACGAATGGA+TGG + chr5_1:2836881-2836900 None:intergenic 35.0%
! ATTTACGTAGTTCTGTAACG+TGG - chr5_1:2836965-2836984 Msa0710940:five_prime_UTR 35.0%
! TTTACGTAGTTCTGTAACGT+GGG - chr5_1:2836966-2836985 Msa0710940:five_prime_UTR 35.0%
CTCACTGTGATAACCGATAA+TGG + chr5_1:2835212-2835231 None:intergenic 40.0%
!! GACTTAAGAGTTTGTTGGCA+TGG + chr5_1:2835338-2835357 None:intergenic 40.0%
! GGGCACACATCATATAGTTT+TGG - chr5_1:2835514-2835533 Msa0710940:exon 40.0%
TAAGAGTAAAGCCCCTACAT+TGG - chr5_1:2836015-2836034 Msa0710940:intron 40.0%
CTTACATCATCAGTACCAGA+TGG + chr5_1:2836106-2836125 None:intergenic 40.0%
ATGCGTGCATCTCTCTATAA+AGG - chr5_1:2836297-2836316 Msa0710940:CDS 40.0%
GCATCTCTCTATAAAGGTCT+TGG - chr5_1:2836303-2836322 Msa0710940:CDS 40.0%
AAGGGGTTGTGTATGATATG+GGG + chr5_1:2836354-2836373 None:intergenic 40.0%
GAAGTTGTGGTCACATAAGA+TGG - chr5_1:2836619-2836638 Msa0710940:CDS 40.0%
TTGTGGTCACATAAGATGGT+TGG - chr5_1:2836623-2836642 Msa0710940:CDS 40.0%
! TTACGTAGTTCTGTAACGTG+GGG - chr5_1:2836967-2836986 Msa0710940:five_prime_UTR 40.0%
CTCACTGTGATAACCGATAA+TGG + chr5_1:2835212-2835231 None:intergenic 40.0%
!! GACTTAAGAGTTTGTTGGCA+TGG + chr5_1:2835338-2835357 None:intergenic 40.0%
! GGGCACACATCATATAGTTT+TGG - chr5_1:2835514-2835533 Msa0710940:exon 40.0%
TAAGAGTAAAGCCCCTACAT+TGG - chr5_1:2836015-2836034 Msa0710940:intron 40.0%
CTTACATCATCAGTACCAGA+TGG + chr5_1:2836106-2836125 None:intergenic 40.0%
ATGCGTGCATCTCTCTATAA+AGG - chr5_1:2836297-2836316 Msa0710940:CDS 40.0%
GCATCTCTCTATAAAGGTCT+TGG - chr5_1:2836303-2836322 Msa0710940:CDS 40.0%
AAGGGGTTGTGTATGATATG+GGG + chr5_1:2836354-2836373 None:intergenic 40.0%
GAAGTTGTGGTCACATAAGA+TGG - chr5_1:2836619-2836638 Msa0710940:CDS 40.0%
TTGTGGTCACATAAGATGGT+TGG - chr5_1:2836623-2836642 Msa0710940:CDS 40.0%
! TTACGTAGTTCTGTAACGTG+GGG - chr5_1:2836967-2836986 Msa0710940:five_prime_UTR 40.0%
ATGGGAGAGGTTAAATAGGC+AGG + chr5_1:2835319-2835338 None:intergenic 45.0%
TGGCATGGGAGAGGTTAAAT+AGG + chr5_1:2835323-2835342 None:intergenic 45.0%
ATATAACCTGCGCATGCAAC+TGG + chr5_1:2835430-2835449 None:intergenic 45.0%
AGAAGATTGAACAGGTGGAG+GGG + chr5_1:2835666-2835685 None:intergenic 45.0%
GAGAAGATTGAACAGGTGGA+GGG + chr5_1:2835667-2835686 None:intergenic 45.0%
GCTTTACTCTTAAGCTTGGC+AGG + chr5_1:2836007-2836026 None:intergenic 45.0%
AGGGGCTTTACTCTTAAGCT+TGG + chr5_1:2836011-2836030 None:intergenic 45.0%
AGAGTACAGGTGCCAATGTA+GGG + chr5_1:2836030-2836049 None:intergenic 45.0%
TACCAGATGGAGAGATAGAG+GGG + chr5_1:2836093-2836112 None:intergenic 45.0%
GTACCAGATGGAGAGATAGA+GGG + chr5_1:2836094-2836113 None:intergenic 45.0%
AGTACCAGATGGAGAGATAG+AGG + chr5_1:2836095-2836114 None:intergenic 45.0%
! CGATCTAGAACAGCAAGTAC+AGG + chr5_1:2836670-2836689 None:intergenic 45.0%
!! GAGTTCTGAAGAGAAGACAG+AGG + chr5_1:2836696-2836715 None:intergenic 45.0%
TGAGACATTCATTTCAGGGG+AGG - chr5_1:2836800-2836819 Msa0710940:five_prime_UTR 45.0%
ATGGGAGAGGTTAAATAGGC+AGG + chr5_1:2835319-2835338 None:intergenic 45.0%
TGGCATGGGAGAGGTTAAAT+AGG + chr5_1:2835323-2835342 None:intergenic 45.0%
ATATAACCTGCGCATGCAAC+TGG + chr5_1:2835430-2835449 None:intergenic 45.0%
AGAAGATTGAACAGGTGGAG+GGG + chr5_1:2835666-2835685 None:intergenic 45.0%
GAGAAGATTGAACAGGTGGA+GGG + chr5_1:2835667-2835686 None:intergenic 45.0%
GCTTTACTCTTAAGCTTGGC+AGG + chr5_1:2836007-2836026 None:intergenic 45.0%
AGGGGCTTTACTCTTAAGCT+TGG + chr5_1:2836011-2836030 None:intergenic 45.0%
AGAGTACAGGTGCCAATGTA+GGG + chr5_1:2836030-2836049 None:intergenic 45.0%
TACCAGATGGAGAGATAGAG+GGG + chr5_1:2836093-2836112 None:intergenic 45.0%
GTACCAGATGGAGAGATAGA+GGG + chr5_1:2836094-2836113 None:intergenic 45.0%
AGTACCAGATGGAGAGATAG+AGG + chr5_1:2836095-2836114 None:intergenic 45.0%
! CGATCTAGAACAGCAAGTAC+AGG + chr5_1:2836670-2836689 None:intergenic 45.0%
!! GAGTTCTGAAGAGAAGACAG+AGG + chr5_1:2836696-2836715 None:intergenic 45.0%
TGAGACATTCATTTCAGGGG+AGG - chr5_1:2836800-2836819 Msa0710940:five_prime_UTR 45.0%
ACAATGACCTCTTTCACCCC+TGG + chr5_1:2835161-2835180 None:intergenic 50.0%
!! AGAGTTTGTTGGCATGGGAG+AGG + chr5_1:2835332-2835351 None:intergenic 50.0%
! TGGTGCTGGAGATGAGTTTG+GGG + chr5_1:2835600-2835619 None:intergenic 50.0%
! GTGGTGCTGGAGATGAGTTT+GGG + chr5_1:2835601-2835620 None:intergenic 50.0%
GGTGTATTAGCAGGAGGAGT+GGG + chr5_1:2835623-2835642 None:intergenic 50.0%
AGGTGTATTAGCAGGAGGAG+TGG + chr5_1:2835624-2835643 None:intergenic 50.0%
! GTTGGAGGTGTATTAGCAGG+AGG + chr5_1:2835629-2835648 None:intergenic 50.0%
! GTGGTTGGAGGTGTATTAGC+AGG + chr5_1:2835632-2835651 None:intergenic 50.0%
GGAGAAGATTGAACAGGTGG+AGG + chr5_1:2835668-2835687 None:intergenic 50.0%
GGAGGAGAAGATTGAACAGG+TGG + chr5_1:2835671-2835690 None:intergenic 50.0%
GGTGGAGGAGAAGATTGAAC+AGG + chr5_1:2835674-2835693 None:intergenic 50.0%
AGGTGGAGGAGAAGACTGAA+CGG + chr5_1:2835759-2835778 None:intergenic 50.0%
ACTCTTAAGCTTGGCAGGAG+CGG + chr5_1:2836002-2836021 None:intergenic 50.0%
GAGTACAGGTGCCAATGTAG+GGG + chr5_1:2836029-2836048 None:intergenic 50.0%
! GAGAGTACAGGTGCCAATGT+AGG + chr5_1:2836031-2836050 None:intergenic 50.0%
ACCAGATGGAGAGATAGAGG+GGG + chr5_1:2836092-2836111 None:intergenic 50.0%
CCATGCGCGCACACAAAATT+TGG + chr5_1:2836519-2836538 None:intergenic 50.0%
! CCAAATTTTGTGTGCGCGCA+TGG - chr5_1:2836516-2836535 Msa0710940:CDS 50.0%
ACAATGACCTCTTTCACCCC+TGG + chr5_1:2835161-2835180 None:intergenic 50.0%
!! AGAGTTTGTTGGCATGGGAG+AGG + chr5_1:2835332-2835351 None:intergenic 50.0%
! TGGTGCTGGAGATGAGTTTG+GGG + chr5_1:2835600-2835619 None:intergenic 50.0%
! GTGGTGCTGGAGATGAGTTT+GGG + chr5_1:2835601-2835620 None:intergenic 50.0%
GGTGTATTAGCAGGAGGAGT+GGG + chr5_1:2835623-2835642 None:intergenic 50.0%
AGGTGTATTAGCAGGAGGAG+TGG + chr5_1:2835624-2835643 None:intergenic 50.0%
! GTTGGAGGTGTATTAGCAGG+AGG + chr5_1:2835629-2835648 None:intergenic 50.0%
! GTGGTTGGAGGTGTATTAGC+AGG + chr5_1:2835632-2835651 None:intergenic 50.0%
GGAGAAGATTGAACAGGTGG+AGG + chr5_1:2835668-2835687 None:intergenic 50.0%
GGAGGAGAAGATTGAACAGG+TGG + chr5_1:2835671-2835690 None:intergenic 50.0%
GGTGGAGGAGAAGATTGAAC+AGG + chr5_1:2835674-2835693 None:intergenic 50.0%
AGGTGGAGGAGAAGACTGAA+CGG + chr5_1:2835759-2835778 None:intergenic 50.0%
ACTCTTAAGCTTGGCAGGAG+CGG + chr5_1:2836002-2836021 None:intergenic 50.0%
GAGTACAGGTGCCAATGTAG+GGG + chr5_1:2836029-2836048 None:intergenic 50.0%
! GAGAGTACAGGTGCCAATGT+AGG + chr5_1:2836031-2836050 None:intergenic 50.0%
ACCAGATGGAGAGATAGAGG+GGG + chr5_1:2836092-2836111 None:intergenic 50.0%
CCATGCGCGCACACAAAATT+TGG + chr5_1:2836519-2836538 None:intergenic 50.0%
! CCAAATTTTGTGTGCGCGCA+TGG - chr5_1:2836516-2836535 Msa0710940:CDS 50.0%
! TGCGCTGTGTTTTCCAGCGT+AGG - chr5_1:2835551-2835570 Msa0710940:CDS 55.0%
! GGAGGTGGATGGAGCTTGTT+GGG + chr5_1:2835579-2835598 None:intergenic 55.0%
GATGAGTTTGGGGAGGTGGA+TGG + chr5_1:2835590-2835609 None:intergenic 55.0%
TGGAGATGAGTTTGGGGAGG+TGG + chr5_1:2835594-2835613 None:intergenic 55.0%
TGCTGGAGATGAGTTTGGGG+AGG + chr5_1:2835597-2835616 None:intergenic 55.0%
! GGTGGTGCTGGAGATGAGTT+TGG + chr5_1:2835602-2835621 None:intergenic 55.0%
GTATTAGCAGGAGGAGTGGG+TGG + chr5_1:2835620-2835639 None:intergenic 55.0%
AGATTGAACAGGTGGAGGGG+AGG + chr5_1:2835663-2835682 None:intergenic 55.0%
TGGAGGTGGAGAAGACTGCA+CGG + chr5_1:2835696-2835715 None:intergenic 55.0%
AGGAGAAGACTGAACGGGAG+GGG + chr5_1:2835753-2835772 None:intergenic 55.0%
GAGGAGAAGACTGAACGGGA+GGG + chr5_1:2835754-2835773 None:intergenic 55.0%
GGTGGAGGAGAAGACTGAAC+GGG + chr5_1:2835758-2835777 None:intergenic 55.0%
!! TTGCTGAACTGGTGGTGGAG+CGG + chr5_1:2835786-2835805 None:intergenic 55.0%
GGAGATTGCTGAACTGGTGG+TGG + chr5_1:2835791-2835810 None:intergenic 55.0%
GGAGGAGATTGCTGAACTGG+TGG + chr5_1:2835794-2835813 None:intergenic 55.0%
GGAGGAGGAGATTGCTGAAC+TGG + chr5_1:2835797-2835816 None:intergenic 55.0%
AACAGGTGGAGGAGTGAGTG+GGG + chr5_1:2835822-2835841 None:intergenic 55.0%
GAACAGGTGGAGGAGTGAGT+GGG + chr5_1:2835823-2835842 None:intergenic 55.0%
TGAACAGGTGGAGGAGTGAG+TGG + chr5_1:2835824-2835843 None:intergenic 55.0%
GGAGTAGACTGAACAGGTGG+AGG + chr5_1:2835833-2835852 None:intergenic 55.0%
GGTGGAGTAGACTGAACAGG+TGG + chr5_1:2835836-2835855 None:intergenic 55.0%
!! GGTGGTGGAGTAGACTGAAC+AGG + chr5_1:2835839-2835858 None:intergenic 55.0%
! AGAATGGTGGAGGTGAGGCA+GGG + chr5_1:2835874-2835893 None:intergenic 55.0%
! AGGAGAGAATGGTGGAGGTG+AGG + chr5_1:2835879-2835898 None:intergenic 55.0%
AGTTGCTGGAGGTGGAGTTG+CGG + chr5_1:2835921-2835940 None:intergenic 55.0%
AGTTGCTGGCGGAGATGAGA+GGG + chr5_1:2835969-2835988 None:intergenic 55.0%
TAGTTGCTGGCGGAGATGAG+AGG + chr5_1:2835970-2835989 None:intergenic 55.0%
CTCTTAAGCTTGGCAGGAGC+GGG + chr5_1:2836001-2836020 None:intergenic 55.0%
! GCATCTGATGGCGAGAGTAC+AGG + chr5_1:2836043-2836062 None:intergenic 55.0%
TCCCCCTCTATCTCTCCATC+TGG - chr5_1:2836088-2836107 Msa0710940:CDS 55.0%
AGAGTGGGGCAGAGAAGTTG+TGG - chr5_1:2836606-2836625 Msa0710940:CDS 55.0%
ACGTGGGGAGACTCTACAAC+AGG - chr5_1:2836982-2837001 Msa0710940:five_prime_UTR 55.0%
ATGACCTCTTTCACCCCTGG+TGG + chr5_1:2835158-2835177 None:intergenic 55.0%
! TGCGCTGTGTTTTCCAGCGT+AGG - chr5_1:2835551-2835570 Msa0710940:CDS 55.0%
! GGAGGTGGATGGAGCTTGTT+GGG + chr5_1:2835579-2835598 None:intergenic 55.0%
GATGAGTTTGGGGAGGTGGA+TGG + chr5_1:2835590-2835609 None:intergenic 55.0%
TGGAGATGAGTTTGGGGAGG+TGG + chr5_1:2835594-2835613 None:intergenic 55.0%
TGCTGGAGATGAGTTTGGGG+AGG + chr5_1:2835597-2835616 None:intergenic 55.0%
! GGTGGTGCTGGAGATGAGTT+TGG + chr5_1:2835602-2835621 None:intergenic 55.0%
GTATTAGCAGGAGGAGTGGG+TGG + chr5_1:2835620-2835639 None:intergenic 55.0%
AGATTGAACAGGTGGAGGGG+AGG + chr5_1:2835663-2835682 None:intergenic 55.0%
TGGAGGTGGAGAAGACTGCA+CGG + chr5_1:2835696-2835715 None:intergenic 55.0%
AGGAGAAGACTGAACGGGAG+GGG + chr5_1:2835753-2835772 None:intergenic 55.0%
GAGGAGAAGACTGAACGGGA+GGG + chr5_1:2835754-2835773 None:intergenic 55.0%
GGTGGAGGAGAAGACTGAAC+GGG + chr5_1:2835758-2835777 None:intergenic 55.0%
!! TTGCTGAACTGGTGGTGGAG+CGG + chr5_1:2835786-2835805 None:intergenic 55.0%
GGAGATTGCTGAACTGGTGG+TGG + chr5_1:2835791-2835810 None:intergenic 55.0%
GGAGGAGATTGCTGAACTGG+TGG + chr5_1:2835794-2835813 None:intergenic 55.0%
GGAGGAGGAGATTGCTGAAC+TGG + chr5_1:2835797-2835816 None:intergenic 55.0%
AACAGGTGGAGGAGTGAGTG+GGG + chr5_1:2835822-2835841 None:intergenic 55.0%
GAACAGGTGGAGGAGTGAGT+GGG + chr5_1:2835823-2835842 None:intergenic 55.0%
TGAACAGGTGGAGGAGTGAG+TGG + chr5_1:2835824-2835843 None:intergenic 55.0%
GGAGTAGACTGAACAGGTGG+AGG + chr5_1:2835833-2835852 None:intergenic 55.0%
GGTGGAGTAGACTGAACAGG+TGG + chr5_1:2835836-2835855 None:intergenic 55.0%
!! GGTGGTGGAGTAGACTGAAC+AGG + chr5_1:2835839-2835858 None:intergenic 55.0%
! AGAATGGTGGAGGTGAGGCA+GGG + chr5_1:2835874-2835893 None:intergenic 55.0%
! AGGAGAGAATGGTGGAGGTG+AGG + chr5_1:2835879-2835898 None:intergenic 55.0%
AGTTGCTGGAGGTGGAGTTG+CGG + chr5_1:2835921-2835940 None:intergenic 55.0%
AGTTGCTGGCGGAGATGAGA+GGG + chr5_1:2835969-2835988 None:intergenic 55.0%
TAGTTGCTGGCGGAGATGAG+AGG + chr5_1:2835970-2835989 None:intergenic 55.0%
CTCTTAAGCTTGGCAGGAGC+GGG + chr5_1:2836001-2836020 None:intergenic 55.0%
! GCATCTGATGGCGAGAGTAC+AGG + chr5_1:2836043-2836062 None:intergenic 55.0%
TCCCCCTCTATCTCTCCATC+TGG - chr5_1:2836088-2836107 Msa0710940:CDS 55.0%
AGAGTGGGGCAGAGAAGTTG+TGG - chr5_1:2836606-2836625 Msa0710940:CDS 55.0%
ACGTGGGGAGACTCTACAAC+AGG - chr5_1:2836982-2837001 Msa0710940:five_prime_UTR 55.0%
AACCTGCGCATGCAACTGGC+AGG + chr5_1:2835426-2835445 None:intergenic 60.0%
!! AGCTTGTTGGGCTCCTACGC+TGG + chr5_1:2835567-2835586 None:intergenic 60.0%
GGGAGGTGGATGGAGCTTGT+TGG + chr5_1:2835580-2835599 None:intergenic 60.0%
GAGGCTTGAGGAGTGGTTGG+AGG + chr5_1:2835644-2835663 None:intergenic 60.0%
GGAGGTGGAGAAGACTGCAC+GGG + chr5_1:2835695-2835714 None:intergenic 60.0%
!! AGTGGACTGAGCTGGTGGAG+GGG + chr5_1:2835729-2835748 None:intergenic 60.0%
!! GAGTGGACTGAGCTGGTGGA+GGG + chr5_1:2835730-2835749 None:intergenic 60.0%
GGAGAAGACTGAACGGGAGG+GGG + chr5_1:2835752-2835771 None:intergenic 60.0%
GGAGGAGAAGACTGAACGGG+AGG + chr5_1:2835755-2835774 None:intergenic 60.0%
!! ACTGGTGGTGGAGCGGATAC+AGG + chr5_1:2835779-2835798 None:intergenic 60.0%
! AATGGTGGAGGTGAGGCAGG+GGG + chr5_1:2835872-2835891 None:intergenic 60.0%
! GAATGGTGGAGGTGAGGCAG+GGG + chr5_1:2835873-2835892 None:intergenic 60.0%
! GAGAATGGTGGAGGTGAGGC+AGG + chr5_1:2835875-2835894 None:intergenic 60.0%
GTAGCAGGGGGAGGAGAGAA+TGG + chr5_1:2835890-2835909 None:intergenic 60.0%
TTGCGGGAGGTGGAGTAGCA+GGG + chr5_1:2835904-2835923 None:intergenic 60.0%
GTTGCTGGAGGTGGAGTTGC+GGG + chr5_1:2835920-2835939 None:intergenic 60.0%
ACCTCCAGCAACTCCTCCTC+CGG - chr5_1:2835928-2835947 Msa0710940:intron 60.0%
AGGGGAGTAGGTGTGAGTGC+CGG + chr5_1:2835950-2835969 None:intergenic 60.0%
GTTGCTGGCGGAGATGAGAG+GGG + chr5_1:2835968-2835987 None:intergenic 60.0%
GGAGCTGGAGTAGTTGCTGG+CGG + chr5_1:2835980-2835999 None:intergenic 60.0%
AGAGAAGAGAGTCCGGGAGC+GGG + chr5_1:2836067-2836086 None:intergenic 60.0%
GAGAGAAGAGAGTCCGGGAG+CGG + chr5_1:2836068-2836087 None:intergenic 60.0%
GGGGAGAGAGAAGAGAGTCC+GGG + chr5_1:2836073-2836092 None:intergenic 60.0%
GGGGGAGAGAGAAGAGAGTC+CGG + chr5_1:2836074-2836093 None:intergenic 60.0%
AACCTGCGCATGCAACTGGC+AGG + chr5_1:2835426-2835445 None:intergenic 60.0%
!! AGCTTGTTGGGCTCCTACGC+TGG + chr5_1:2835567-2835586 None:intergenic 60.0%
GGGAGGTGGATGGAGCTTGT+TGG + chr5_1:2835580-2835599 None:intergenic 60.0%
GAGGCTTGAGGAGTGGTTGG+AGG + chr5_1:2835644-2835663 None:intergenic 60.0%
GGAGGTGGAGAAGACTGCAC+GGG + chr5_1:2835695-2835714 None:intergenic 60.0%
!! AGTGGACTGAGCTGGTGGAG+GGG + chr5_1:2835729-2835748 None:intergenic 60.0%
!! GAGTGGACTGAGCTGGTGGA+GGG + chr5_1:2835730-2835749 None:intergenic 60.0%
GGAGAAGACTGAACGGGAGG+GGG + chr5_1:2835752-2835771 None:intergenic 60.0%
GGAGGAGAAGACTGAACGGG+AGG + chr5_1:2835755-2835774 None:intergenic 60.0%
!! ACTGGTGGTGGAGCGGATAC+AGG + chr5_1:2835779-2835798 None:intergenic 60.0%
! AATGGTGGAGGTGAGGCAGG+GGG + chr5_1:2835872-2835891 None:intergenic 60.0%
! GAATGGTGGAGGTGAGGCAG+GGG + chr5_1:2835873-2835892 None:intergenic 60.0%
! GAGAATGGTGGAGGTGAGGC+AGG + chr5_1:2835875-2835894 None:intergenic 60.0%
GTAGCAGGGGGAGGAGAGAA+TGG + chr5_1:2835890-2835909 None:intergenic 60.0%
TTGCGGGAGGTGGAGTAGCA+GGG + chr5_1:2835904-2835923 None:intergenic 60.0%
GTTGCTGGAGGTGGAGTTGC+GGG + chr5_1:2835920-2835939 None:intergenic 60.0%
ACCTCCAGCAACTCCTCCTC+CGG - chr5_1:2835928-2835947 Msa0710940:intron 60.0%
AGGGGAGTAGGTGTGAGTGC+CGG + chr5_1:2835950-2835969 None:intergenic 60.0%
GTTGCTGGCGGAGATGAGAG+GGG + chr5_1:2835968-2835987 None:intergenic 60.0%
GGAGCTGGAGTAGTTGCTGG+CGG + chr5_1:2835980-2835999 None:intergenic 60.0%
AGAGAAGAGAGTCCGGGAGC+GGG + chr5_1:2836067-2836086 None:intergenic 60.0%
GAGAGAAGAGAGTCCGGGAG+CGG + chr5_1:2836068-2836087 None:intergenic 60.0%
GGGGAGAGAGAAGAGAGTCC+GGG + chr5_1:2836073-2836092 None:intergenic 60.0%
GGGGGAGAGAGAAGAGAGTC+CGG + chr5_1:2836074-2836093 None:intergenic 60.0%
GACCTGCCAGTTGCATGCGC+AGG - chr5_1:2835421-2835440 Msa0710940:three_prime_UTR 65.0%
GGGGAGGCTTGAGGAGTGGT+TGG + chr5_1:2835647-2835666 None:intergenic 65.0%
TGGAGGGGAGGCTTGAGGAG+TGG + chr5_1:2835651-2835670 None:intergenic 65.0%
ACAGGTGGAGGGGAGGCTTG+AGG + chr5_1:2835656-2835675 None:intergenic 65.0%
GGAGAAGACTGCACGGGTGG+AGG + chr5_1:2835689-2835708 None:intergenic 65.0%
GGTGGAGAAGACTGCACGGG+TGG + chr5_1:2835692-2835711 None:intergenic 65.0%
GGGGAGGACTGAACTGGAGG+TGG + chr5_1:2835710-2835729 None:intergenic 65.0%
GGAGGGGAGGACTGAACTGG+AGG + chr5_1:2835713-2835732 None:intergenic 65.0%
GGTGGAGGGGAGGACTGAAC+TGG + chr5_1:2835716-2835735 None:intergenic 65.0%
!! GGAGTGGACTGAGCTGGTGG+AGG + chr5_1:2835731-2835750 None:intergenic 65.0%
AGACTGAACGGGAGGGGGAG+TGG + chr5_1:2835747-2835766 None:intergenic 65.0%
GGTGGAGCGGATACAGGTGG+AGG + chr5_1:2835773-2835792 None:intergenic 65.0%
!! GGTGGTGGAGCGGATACAGG+TGG + chr5_1:2835776-2835795 None:intergenic 65.0%
GGAGTGAGTGGGGTTGGAGG+AGG + chr5_1:2835812-2835831 None:intergenic 65.0%
GGAGGAGTGAGTGGGGTTGG+AGG + chr5_1:2835815-2835834 None:intergenic 65.0%
GGTGGAGGAGTGAGTGGGGT+TGG + chr5_1:2835818-2835837 None:intergenic 65.0%
GGGGGAGGAGAGAATGGTGG+AGG + chr5_1:2835884-2835903 None:intergenic 65.0%
GCAGGGGGAGGAGAGAATGG+TGG + chr5_1:2835887-2835906 None:intergenic 65.0%
TGCGGGAGGTGGAGTAGCAG+GGG + chr5_1:2835903-2835922 None:intergenic 65.0%
GTTGCGGGAGGTGGAGTAGC+AGG + chr5_1:2835905-2835924 None:intergenic 65.0%
GGAGGAGGAGTTGCTGGAGG+TGG + chr5_1:2835929-2835948 None:intergenic 65.0%
! AGTGCCGGAGGAGGAGTTGC+TGG + chr5_1:2835935-2835954 None:intergenic 65.0%
!! GTAGGTGTGAGTGCCGGAGG+AGG + chr5_1:2835944-2835963 None:intergenic 65.0%
!! GGAGTAGGTGTGAGTGCCGG+AGG + chr5_1:2835947-2835966 None:intergenic 65.0%
GGCGGAGATGAGAGGGGAGT+AGG + chr5_1:2835962-2835981 None:intergenic 65.0%
GCGGGAGCTGGAGTAGTTGC+TGG + chr5_1:2835983-2836002 None:intergenic 65.0%
CCATCAGATGCTCCCGCTCC+CGG - chr5_1:2836052-2836071 Msa0710940:intron 65.0%
GACCTGCCAGTTGCATGCGC+AGG - chr5_1:2835421-2835440 Msa0710940:three_prime_UTR 65.0%
GGGGAGGCTTGAGGAGTGGT+TGG + chr5_1:2835647-2835666 None:intergenic 65.0%
TGGAGGGGAGGCTTGAGGAG+TGG + chr5_1:2835651-2835670 None:intergenic 65.0%
ACAGGTGGAGGGGAGGCTTG+AGG + chr5_1:2835656-2835675 None:intergenic 65.0%
GGAGAAGACTGCACGGGTGG+AGG + chr5_1:2835689-2835708 None:intergenic 65.0%
GGTGGAGAAGACTGCACGGG+TGG + chr5_1:2835692-2835711 None:intergenic 65.0%
GGGGAGGACTGAACTGGAGG+TGG + chr5_1:2835710-2835729 None:intergenic 65.0%
GGAGGGGAGGACTGAACTGG+AGG + chr5_1:2835713-2835732 None:intergenic 65.0%
GGTGGAGGGGAGGACTGAAC+TGG + chr5_1:2835716-2835735 None:intergenic 65.0%
!! GGAGTGGACTGAGCTGGTGG+AGG + chr5_1:2835731-2835750 None:intergenic 65.0%
AGACTGAACGGGAGGGGGAG+TGG + chr5_1:2835747-2835766 None:intergenic 65.0%
GGTGGAGCGGATACAGGTGG+AGG + chr5_1:2835773-2835792 None:intergenic 65.0%
!! GGTGGTGGAGCGGATACAGG+TGG + chr5_1:2835776-2835795 None:intergenic 65.0%
GGAGTGAGTGGGGTTGGAGG+AGG + chr5_1:2835812-2835831 None:intergenic 65.0%
GGAGGAGTGAGTGGGGTTGG+AGG + chr5_1:2835815-2835834 None:intergenic 65.0%
GGTGGAGGAGTGAGTGGGGT+TGG + chr5_1:2835818-2835837 None:intergenic 65.0%
GGGGGAGGAGAGAATGGTGG+AGG + chr5_1:2835884-2835903 None:intergenic 65.0%
GCAGGGGGAGGAGAGAATGG+TGG + chr5_1:2835887-2835906 None:intergenic 65.0%
TGCGGGAGGTGGAGTAGCAG+GGG + chr5_1:2835903-2835922 None:intergenic 65.0%
GTTGCGGGAGGTGGAGTAGC+AGG + chr5_1:2835905-2835924 None:intergenic 65.0%
GGAGGAGGAGTTGCTGGAGG+TGG + chr5_1:2835929-2835948 None:intergenic 65.0%
! AGTGCCGGAGGAGGAGTTGC+TGG + chr5_1:2835935-2835954 None:intergenic 65.0%
!! GTAGGTGTGAGTGCCGGAGG+AGG + chr5_1:2835944-2835963 None:intergenic 65.0%
!! GGAGTAGGTGTGAGTGCCGG+AGG + chr5_1:2835947-2835966 None:intergenic 65.0%
GGCGGAGATGAGAGGGGAGT+AGG + chr5_1:2835962-2835981 None:intergenic 65.0%
GCGGGAGCTGGAGTAGTTGC+TGG + chr5_1:2835983-2836002 None:intergenic 65.0%
CCATCAGATGCTCCCGCTCC+CGG - chr5_1:2836052-2836071 Msa0710940:intron 65.0%
GCAGGAGGAGTGGGTGGTGC+TGG + chr5_1:2835614-2835633 None:intergenic 70.0%
GGACTGAGCTGGTGGAGGGG+AGG + chr5_1:2835726-2835745 None:intergenic 70.0%
!! GGGGGAGTGGACTGAGCTGG+TGG + chr5_1:2835734-2835753 None:intergenic 70.0%
!! GGAGGGGGAGTGGACTGAGC+TGG + chr5_1:2835737-2835756 None:intergenic 70.0%
! GGGGGTGGTGATGCAGGTGG+TGG + chr5_1:2835854-2835873 None:intergenic 70.0%
! GCAGGGGGTGGTGATGCAGG+TGG + chr5_1:2835857-2835876 None:intergenic 70.0%
! GAGGCAGGGGGTGGTGATGC+AGG + chr5_1:2835860-2835879 None:intergenic 70.0%
GGAGGTGGAGTAGCAGGGGG+AGG + chr5_1:2835899-2835918 None:intergenic 70.0%
GCGGGAGGTGGAGTAGCAGG+GGG + chr5_1:2835902-2835921 None:intergenic 70.0%
GGAGGTGGAGTTGCGGGAGG+TGG + chr5_1:2835914-2835933 None:intergenic 70.0%
GCTGGAGGTGGAGTTGCGGG+AGG + chr5_1:2835917-2835936 None:intergenic 70.0%
GCCGGAGGAGGAGTTGCTGG+AGG + chr5_1:2835932-2835951 None:intergenic 70.0%
AGCTTGGCAGGAGCGGGAGC+TGG + chr5_1:2835995-2836014 None:intergenic 70.0%
!! CCGGGAGCGGGAGCATCTGA+TGG + chr5_1:2836055-2836074 None:intergenic 70.0%
GCAGGAGGAGTGGGTGGTGC+TGG + chr5_1:2835614-2835633 None:intergenic 70.0%
GGACTGAGCTGGTGGAGGGG+AGG + chr5_1:2835726-2835745 None:intergenic 70.0%
!! GGGGGAGTGGACTGAGCTGG+TGG + chr5_1:2835734-2835753 None:intergenic 70.0%
!! GGAGGGGGAGTGGACTGAGC+TGG + chr5_1:2835737-2835756 None:intergenic 70.0%
! GGGGGTGGTGATGCAGGTGG+TGG + chr5_1:2835854-2835873 None:intergenic 70.0%
! GCAGGGGGTGGTGATGCAGG+TGG + chr5_1:2835857-2835876 None:intergenic 70.0%
! GAGGCAGGGGGTGGTGATGC+AGG + chr5_1:2835860-2835879 None:intergenic 70.0%
GGAGGTGGAGTAGCAGGGGG+AGG + chr5_1:2835899-2835918 None:intergenic 70.0%
GCGGGAGGTGGAGTAGCAGG+GGG + chr5_1:2835902-2835921 None:intergenic 70.0%
GGAGGTGGAGTTGCGGGAGG+TGG + chr5_1:2835914-2835933 None:intergenic 70.0%
GCTGGAGGTGGAGTTGCGGG+AGG + chr5_1:2835917-2835936 None:intergenic 70.0%
GCCGGAGGAGGAGTTGCTGG+AGG + chr5_1:2835932-2835951 None:intergenic 70.0%
AGCTTGGCAGGAGCGGGAGC+TGG + chr5_1:2835995-2836014 None:intergenic 70.0%
!! CCGGGAGCGGGAGCATCTGA+TGG + chr5_1:2836055-2836074 None:intergenic 70.0%
GGTGGAGGTGAGGCAGGGGG+TGG + chr5_1:2835869-2835888 None:intergenic 75.0%
GGTGGAGGTGAGGCAGGGGG+TGG + chr5_1:2835869-2835888 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 2835156 2837048 2835156 ID=Msa0710940;Name=Msa0710940
chr5_1 mRNA 2835156 2837048 2835156 ID=Msa0710940-mRNA-1;Parent=Msa0710940;Name=Msa0710940-mRNA-1;_AED=0.00;_eAED=0.00;_QI=356|1|1|1|1|1|2|363|228
chr5_1 exon 2835156 2835596 2835156 ID=Msa0710940-mRNA-1:exon:921;Parent=Msa0710940-mRNA-1
chr5_1 exon 2836084 2837048 2836084 ID=Msa0710940-mRNA-1:exon:920;Parent=Msa0710940-mRNA-1
chr5_1 five_prime_UTR 2836693 2837048 2836693 ID=Msa0710940-mRNA-1:five_prime_utr;Parent=Msa0710940-mRNA-1
chr5_1 CDS 2836084 2836692 2836084 ID=Msa0710940-mRNA-1:cds;Parent=Msa0710940-mRNA-1
chr5_1 CDS 2835519 2835596 2835519 ID=Msa0710940-mRNA-1:cds;Parent=Msa0710940-mRNA-1
chr5_1 three_prime_UTR 2835156 2835518 2835156 ID=Msa0710940-mRNA-1:three_prime_utr;Parent=Msa0710940-mRNA-1
Gene Sequence

>Msa0710940

ATGGGCACACATCATATAGTTTTGGTGGTTGGTTTGATCTGCGCTGTGTTTTCCAGCGTAGGAGCCCAACAAGCTCCATCCACCTCCCCAAACTCATCTCCAGCACCACCCACTCCTCCTGCTAATACACCTCCAACCACTCCTCAAGCCTCCCCTCCACCTGTTCAATCTTCTCCTCCACCCGTGCAGTCTTCTCCACCTCCAGTTCAGTCCTCCCCTCCACCAGCTCAGTCCACTCCCCCTCCCGTTCAGTCTTCTCCTCCACCTGTATCCGCTCCACCACCAGTTCAGCAATCTCCTCCTCCAACCCCACTCACTCCTCCACCTGTTCAGTCTACTCCACCACCTGCATCACCACCCCCTGCCTCACCTCCACCATTCTCTCCTCCCCCTGCTACTCCACCTCCCGCAACTCCACCTCCAGCAACTCCTCCTCCGGCACTCACACCTACTCCCCTCTCATCTCCGCCAGCAACTACTCCAGCTCCCGCTCCTGCCAAGCTTAAGAGTAAAGCCCCTACATTGGCACCTGTACTCTCGCCATCAGATGCTCCCGCTCCCGGACTCTCTTCTCTCTCCCCCTCTATCTCTCCATCTGGTACTGATGATAGTGGGGCAGAGAAGTTGTGGTCACATAAGATGGTTGGATTAGTATTTGGATGTGCTTTCCTGTACTTGCTGTTCTAG
Protein sequence

>Msa0710940

MGTHHIVLVVGLICAVFSSVGAQQAPSTSPNSSPAPPTPPANTPPTTPQASPPPVQSSPPPVQSSPPPVQSSPPPAQSTPPPVQSSPPPVSAPPPVQQSPPPTPLTPPPVQSTPPPASPPPASPPPFSPPPATPPPATPPPATPPPALTPTPLSSPPATTPAPAPAKLKSKAPTLAPVLSPSDAPAPGLSSLSPSISPSGTDDSGAEKLWSHKMVGLVFGCAFLYLLF*